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Castro H, Ogram A, Reddy KR. Phylogenetic characterization of methanogenic assemblages in eutrophic and oligotrophic areas of the Florida Everglades. Appl Environ Microbiol 2004; 70:6559-68. [PMID: 15528519 PMCID: PMC525246 DOI: 10.1128/aem.70.11.6559-6568.2004] [Citation(s) in RCA: 71] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2004] [Accepted: 07/09/2004] [Indexed: 11/20/2022] Open
Abstract
Agricultural activities have produced well-documented changes in the Florida Everglades, including establishment of a gradient in phosphorus concentrations in Water Conservation Area 2A (WCA-2A) of the northern Everglades. An effect of increased phosphorus concentrations is increased methanogenesis in the eutrophic regions compared to the oligotrophic regions of WCA-2A. The goal of this study was to identify relationships between eutrophication and composition and activity of methanogenic assemblages in WCA-2A soils. Distributions of two genes associated with methanogens were characterized in soils taken from WCA-2A: the archaeal 16S rRNA gene and the methyl coenzyme M reductase gene. The richness of methanogen phylotypes was greater in eutrophic than in oligotrophic sites, and sequences related to previously cultivated and uncultivated methanogens were found. A preferential selection for the order Methanomicrobiales was observed in mcrA clone libraries, suggesting primer bias for this group. A greater diversity within the Methanomicrobiales was observed in mcrA clone libraries than in 16S rRNA gene libraries. 16S rRNA phylogenetic analyses revealed a dominance of clones related to Methanosaeta spp., an acetoclastic methanogen dominant in environments with low acetate concentrations. A significant number of clones were related to Methanomicrobiales, an order characterized by species utilizing hydrogen and formate as methanogenic substrates. No representatives of the orders Methanobacteriales and Methanococcales were found in any 16S rRNA clone library, although some Methanobacteriales were found in mcrA libraries. Hydrogenotrophs are the dominant methanogens in WCA-2A, and acetoclastic methanogen genotypes that proliferate in low acetate concentrations outnumber those that typically dominate in higher acetate concentrations.
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Chauhan A, Ogram A, Reddy KR. Syntrophic-methanogenic associations along a nutrient gradient in the Florida Everglades. Appl Environ Microbiol 2004; 70:3475-84. [PMID: 15184146 PMCID: PMC427755 DOI: 10.1128/aem.70.6.3475-3484.2004] [Citation(s) in RCA: 47] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Nutrient runoff from the Everglades Agricultural Area resulted in a well-documented gradient of phosphorus concentrations in soil and water, with concomitant ecosystem-level changes, in the northern Florida Everglades. It was recently reported that sulfate-reducing prokaryote assemblage composition, numbers, and activities are dependent on position along the gradient (H. Castro, K. R. Reddy, and A. Ogram, Appl. Environ. Microbiol. 68:6129-6137, 2002). The present study utilized a combination of culture- and non-culture-based approaches to study differences in composition of assemblages of syntrophic and methanogenic microbial communities in eutrophic, transition, and oligotrophic areas along the phosphorus gradient. Methanogenesis rates were much higher in eutrophic and transition regions, and sequence analysis of 16S rRNA gene clone libraries constructed from samples taken from these regions revealed differences in composition and activities of syntroph-methanogen consortia. Methanogens from eutrophic and transition regions were almost exclusively composed of hydrogenotrophic methanogens, with approximately 10,000-fold-greater most probable numbers of hydrogenotrophs than of acetotrophs. Most cultivable strains from eutrophic and transition regions clustered within novel lineages. In non-culture-based studies to enrich syntrophs, most bacterial and archaeal clones were either members of novel lineages or closely related to uncultivated environmental clones. Novel cultivable Methanosaeta sp. and fatty acid-oxidizing bacteria related to the genera Syntrophomonas and Syntrophobacter were observed in microcosms containing soil from eutrophic regions, and different lines of evidence indicated the existence of novel syntrophic association in eutrophic regions.
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Erion MD, Reddy KR, Boyer SH, Matelich MC, Gomez-Galeno J, Lemus RH, Ugarkar BG, Colby TJ, Schanzer J, Van Poelje PD. Design, synthesis, and characterization of a series of cytochrome P(450) 3A-activated prodrugs (HepDirect prodrugs) useful for targeting phosph(on)ate-based drugs to the liver. J Am Chem Soc 2004; 126:5154-63. [PMID: 15099098 DOI: 10.1021/ja031818y] [Citation(s) in RCA: 116] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
A new class of phosphate and phosphonate prodrugs, called HepDirect prodrugs, is described that combines properties of rapid liver cleavage with high plasma and tissue stability to achieve increased drug levels in the liver. The prodrugs are substituted cyclic 1,3-propanyl esters designed to undergo an oxidative cleavage reaction catalyzed by a cytochrome P(450) (CYP) expressed predominantly in the liver. Reported herein is the discovery of a prodrug series containing an aryl substituent at C4 and its use for the delivery of nucleoside-based drugs to the liver. Prodrugs of 5'-monophosphates of vidarabine, lamivudine (3TC), and cytarabine as well as the phosphonic acid adefovir were shown to cleave following exposure to liver homogenates and exhibit good stability in blood and other tissues. Prodrug cleavage required the presence of the aryl group in the cis-configuration, but was relatively independent of the nucleoside and absolute stereochemistry at C4. Mechanistic studies suggested that prodrug cleavage proceeded via an initial CYP3A-catalyzed oxidation to an intermediate ring-opened monoacid, which subsequently was converted to the phosph(on)ate and an aryl vinyl ketone by a beta-elimination reaction. Studies in primary rat hepatocytes and normal rats comparing 3TC and the corresponding HepDirect prodrug demonstrated the ability of these prodrugs to effectively bypass the rate-limiting nucleoside kinase step and produce higher levels of the biologically active nucleoside triphosphate.
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Abstract
Liver biopsy is traditionally the 'gold standard' for the evaluation of liver diseases. There are several situations in which its role is being challenged. In hepatitis C, liver biopsy helps assess prognosis and treatment candidacy. An important exception is genotype 2 or 3 because treatment is more likely to succeed and therapy is relatively short in duration. For hepatitis B, liver biopsy gives some prognostic information, but serologic tests and hepatic biochemical tests are the primary determinants of treatment candidacy. Non-alcoholic fatty liver disease can be accurately diagnosed without a liver biopsy and, furthermore, there are no specific therapies available. The role of liver biopsy to assess methotrexate-associated hepatotoxicity remains controversial. Finally, patients with focal liver lesions usually do not require biopsy and, in the case of hepatocellular carcinoma, biopsy carries a risk of needle-track seeding. In short, the need for liver biopsy depends on the specific situation and should be performed when there is sufficient uncertainty about diagnosis, severity of disease, prognosis, and treatment decisions.
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105
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Zhao D, Reddy KR, Kakani VG, Mohammed AR, Read JJ, Gao W. Leaf and canopy photosynthetic characteristics of cotton (Gossypium hirsutum) under elevated CO2 concentration and UV-B radiation. JOURNAL OF PLANT PHYSIOLOGY 2004; 161:581-590. [PMID: 15202715 DOI: 10.1078/0176-1617-01229] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
Increases in both atmospheric CO2 concentration ([CO2]) and ultraviolet-B (UV-B) radiation on the Earth's surface are features of current climate change patterns. An experiment was conducted in sunlit, controlled environment chambers known as Soil-Plant-Atmosphere-Research (SPAR) units to determine interactive effects of elevated [CO2] and UV-B radiation on leaf and canopy photosynthetic characteristics of cotton. Six treatments were comprised of two CO2 levels of 360 (ambient) and 720 (elevated) microL L(-1) and three levels of 0 (control), 8, and 16 kJ m(-2) d(-1) biologically effective UV-B radiation. Treatments were imposed for 66 days from crop emergence through three weeks after the first flower stage. Plants grown in elevated [CO2] had significantly greater leaf area, higher leaf and canopy net photosynthetic rates (PN), lower dark respiration rate (Rd), and lower light compensation point (LCP) than plants grown in ambient [CO2]. There was no difference in CO2 compensation point (gamma), maximum rate of Rubisco activity (Vcmax), or light-saturated rate of electron transport (Jmax) between ambient and elevated CO2 treatments. When plants were grown in 8 kJ m(-2) d(-1) UV-B radiation, most of the measured photosynthetic parameters did not differ from control plants. High UV-B (16 kJ) radiation, however, caused 47-50% smaller leaf area, 38-44% lower leaf PN, 72-74% lower Vcmax, and 61-66% lower Jmax compared to the control. There were no interactive effects of [CO2] and UV-B radiation on most of the photosynthetic parameters measured. From the results, it is concluded that decreased canopy photosynthesis due to enhanced UV-B radiation in cotton is associated with both smaller leaf area and lower leaf PN, and loss of Rubisco activity and electron transport are two major factors in UV-B inhibition of leaf PN.
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Abstract
Since the early part of the 20th century, diagnostic laparoscopy has become an important tool in the armamentarium of surgeons and gastroenterologists alike. Its indications have expanded from initial attempts at tamponading internal hemorrhage to avoidance of unnecessary laparotomies with accurate staging of malignancies, treatment of a multitude of intra-abdominal pathologies, and even as a resource for evaluating blunt abdominal trauma and chronic abdominal pain. Its accuracy has been demonstrated in the evaluation of chronic liver diseases, in comparison with other diagnostic modalities. Many further technical advances have been introduced in recent years. Gastroenterology training programs should include formal diagnostic laparoscopy training as part of their curriculum.
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Malecki LM, White JR, Reddy KR. Nitrogen and Phosphorus Flux Rates from Sediment in the Lower St. Johns River Estuary. ACTA ACUST UNITED AC 2004; 33:1545-55. [PMID: 15254137 DOI: 10.2134/jeq2004.1545] [Citation(s) in RCA: 72] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Abstract
Internal cycling of nutrients from the sediment and water column can be an important contribution to the total nutrient load of an aquatic ecosystem. Our objective was to estimate the internal nutrient loading of the Lower St. Johns River (LSJR). Dissolved reactive phosphorus (DRP) and ammonium (NH(4)-N) flux from sediments were measured under aerobic and anaerobic water column conditions using intact cores, to estimate the overall contribution of the sediments to P and N loading to the LSJR. The DRP flux under aerobic water column conditions averaged 0.13 mg m(-2) d(-1), approximately 37 times lower than that under anaerobic conditions (4.77 mg m(-2) d(-1)). The average NH(4)-N released from the anaerobic cores (18.03 mg m(-2) d(-1)) was also significantly greater than in the aerobic cores for all sites and seasons, indicating the strong relationship between nutrient fluxes and oxygen availability in the water column. The mean annual internal DRP load was estimated to be 330 metric tons (Mg) yr(-1), 21% of the total P load to the river, while the mean annual internal load of NH(4)-N was determined to be 2066 Mg yr(-1), 28% of the total N load to the LSJR estuary. As water resource managers reduce external loading to the LSJR the frequency of anaerobic events should decline, thereby reducing nutrient fluxes from the sediment to the water column, reducing the internal loading of DRP and NH(4)-N. Results from this study demonstrate that the internal flux of nutrients from sediments may be a significant portion of the total load and should be accounted for in the total nutrient budget of the river for successful restoration.
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Reddy KR, Kakani VG, Zhao D, Koti S, Gao W. Interactive Effects of Ultraviolet-B Radiation and Temperature on Cotton Physiology, Growth, Development and Hyperspectral Reflectance¶. Photochem Photobiol 2004; 79:416-27. [PMID: 15191050 DOI: 10.1562/2003-11-19-ra.1] [Citation(s) in RCA: 63] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
Abstract
Current conditions of 2-11 kJ m(-2) day(-1) of UV-B radiation and temperatures of >30 degrees C during flowering in cotton cultivated regions are projected to increase in the future. A controlled environment study was conducted in sunlit growth chambers to determine the effects of UV-B radiation and temperature on physiology, growth, development and leaf hyperspectral reflectance of cotton. Plants were grown in the growth chambers at three day/night temperatures (24/16 degrees C, 30/22 degrees C and 36/28 degrees C) and three levels of UV-B radiation (0, 7 and 14 kJ m(-2) day(-1)) at each temperature from emergence to 79 days under optimum nutrient and water conditions. Increases in main stem node number and the node of first fruiting branch and decrease in duration to first flower bud (square) and flower were recorded with increase in temperature. Main effects of temperature and UV-B radiation were significant for net photosynthetic rates, stomatal conductance, total chlorophyll and carotenoid concentrations of uppermost, fully expanded leaves during squaring and flowering. A significant interaction between temperature and UV-B radiation was detected for total biomass and its components. The UV-B radiation of 7 kJ m(-2) day(-1) reduced boll yield by 68% and 97% at 30/22 degrees C and 36/28 degrees C, respectively, compared with yield at 0 kJ m(-2) day(-1) and 30/22 degrees C. No bolls were produced in the three temperature treatments under 14 kJ m(-2) day(-1) UV-B radiation. The first-order interactions between temperature, UV-B radiation and leaf age were significant for leaf reflectance. This study suggests a growth- and process-related temperature dependence of sensitivity to UV-B radiation.
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White JR, Reddy KR. Nitrification and denitrification rates of Everglades wetland soils along a phosphorus-impacted gradient. JOURNAL OF ENVIRONMENTAL QUALITY 2003; 32:2436-2443. [PMID: 14674571 DOI: 10.2134/jeq2003.2436] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
Little information is available on the effect of phosphorus (P) enrichment on nitrogen (N) biogeochemical cycling in wetland soil. Of particular importance are the coupled nitrification-denitrification reactions that regulate the microbially mediated loss of N from wetland systems. Soils from the northern Florida Everglades have been affected by P loading from surface waters over the past 40 years. Elevated P levels have been show to have an effect on the size and activity of the microbial pool and a decrease in the N to P ratio of the microbial biomass. The objective of the study was to determine if P enrichment in soils affected microbial activities related to nitrification and denitrification in these flooded, peat soils. Potential nitrification rates of soil and detritus were determined using constantly stirred reactors under aerobic conditions while denitrification rates were determined from anaerobic incubations of slurry. Nitrification rates showed two distinct linear phases, a slower initial rate, signifying activity of nitrifiers present, followed by a sharp increase in the NH4+ conversion rate indicative of maximum potential rates. Initial rates of nitrification were highest in the surficial detrital layer decreasing with soil depth and did not correlate to soil total P. The potential rates of nitrification were 13 times greater than the initial rates. Potential denitrification rates were highest in the detritus and 0- to 10-cm soil interval with significantly lower values in the 10- to 30-cm soil interval, significantly correlated to total P of the soil. A significant (P < 0.01) relationship was seen between potential denitrification rates and soil total P suggesting an increased rate of N removal from P-enriched regions of the northern Everglades.
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Kakani VG, Reddy KR, Zhao D, Mohammed AR. Effects of ultraviolet-B radiation on cotton (Gossypium hirsutum L.) morphology and anatomy. ANNALS OF BOTANY 2003; 91:817-26. [PMID: 12770842 PMCID: PMC4242390 DOI: 10.1093/aob/mcg086] [Citation(s) in RCA: 64] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/18/2023]
Abstract
Cotton (Gossypium hirsutum L.) crop, cultivated between 40 degrees N and 40 degrees S, is currently experiencing 2-11 kJ m-2 d-1 of UV-B radiation. This is predicted to increase in the near future. An experiment was conducted to study the effect of enhanced UV-B radiation on vegetative and reproductive morphology and leaf anatomy of cotton in sunlit, controlled environment chambers. From emergence to harvest, cotton plants were exposed to 0, 8 or 16 kJ m-2 d-1 of UV-B in a square wave approach for 8 h from 0800 to 1600 h. Changes in plant height, internode and branch length, mainstem node number, leaf area, length and area of petals and bracts, and anther number per flower were recorded. Epidermal cell and stomatal density, stomatal index, leaf thickness, and epidermal, palisade and mesophyll tissue thickness were also measured. Initial chlorotic symptoms on leaves turned into necrotic patches on continued exposure to enhanced UV-B. Exposure to high UV-B reduced both vegetative and reproductive parameters and resulted in a smaller canopy indicating sensitivity of cotton to UV-B radiation. Enhanced UV-B radiation increased epicuticular wax content on adaxial leaf surfaces, and stomatal index on both adaxial and abaxial leaf surfaces. Leaf thickness was reduced following exposure to UV-B owing to a decrease in thickness of both the palisade and mesophyll tissue, while the epidermal thickness remained unchanged. The vegetative parameters studied were affected only by high levels of UV-B (16 kJ m-2 d-1), whereas the reproductive parameters were reduced at both ambient (8 kJ m-2 d-1) and high UV-B levels. The study shows that cotton plants are sensitive to UV-B at both the whole plant and anatomical level.
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111
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Saichek RE, Reddy KR. Effects of system variables on surfactant enhanced electrokinetic removal of polycyclic aromatic hydrocarbons from clayey soils. ENVIRONMENTAL TECHNOLOGY 2003; 24:503-515. [PMID: 12755451 DOI: 10.1080/09593330309385585] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
Numerous polycyclic aromatic hydrocarbon (PAH)-contaminated sites threaten public health and the environment because PAHs are commonly toxins, mutagens, and/or carcinogens. PAHs are hydrophobic and resistant to degradation; therefore, conventional remediation methods are often costly or inefficient, especially when the PAHs are present in low permeability clayey soils. Electrokinetically enhanced in-situ oil flushing is an innovative technology that has the potential to greatly increase soil-solution-contaminant interaction and remedial efficiency, even under low permeability soil conditions. Although this technique is promising, many system variables may affect remedial efficiency, such as the surfactant concentration, pH control and voltage gradient. The objective of this investigation was to evaluate the effects of these system variables. Bench-scale electrokinetic experiments were conducted using various operating conditions, which included deionized water or a 3% or a 5% surfactant concentration flushing solution. Additional tests were also conducted using the 5% surfactant concentration along with a higher pH solution or a larger voltage gradient. The experiments employing the surfactant flushing solution had a lower electroosmotic flow but exhibited greater contaminant desorption, solubilization and migration. The benefits of using a higher pH solution or a larger voltage gradient were difficult to discern because changing these process variables did not significantly improve remedial efficiency. Overall, the results indicated that the surfactant flushing solution was advantageous for treating the soil near the anode region, but contaminant migration was limited by changes in the soil and/or solution chemistry that occurred with time and/or distance from the anode.
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112
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Pant HK, Reddy KR. Potential internal loading of phosphorus in a wetland constructed in agricultural land. WATER RESEARCH 2003; 37:965-972. [PMID: 12553971 DOI: 10.1016/s0043-1354(02)00474-8] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
Wetland construction on agricultural or dairy lands could result in solubilization of phosphorus (P) stored in soils and release to the water column. To study the extent of P flux during the start-up period of a constructed wetland, intact soil-cores from areas used for dairy operations, in Okeechobee, Florida, USA were obtained and flooded with adjacent creek water. In the first 28-day hydraulic-retention period, P concentration in the water column increased several fold due to rapid P flux from impacted soils. A continuous decrease in P flux to the water column until the third hydraulic retention cycle (initial influent P concentration 0.2 mgL(-1)), and constant thereafter suggest that the effect of initial influent P upon long-term P flux from soils could be limited. The initial release maybe due to high concentration of labile P in impacted soils; however, slow dissolution of relatively stable P pools could maintain a steady flux, well above of that observed from non-impacted soils. Water soluble P along with double acid-extractable magnesium explained 76% of the variability in cumulative P flux to the water column. Apparently, co-occurrence of active adsorption-desorption phenomena due to independent maintenance of equilibrium by individual P compounds regulates P dynamics of the water column. The results indicated that equilibrium P concentration of the water column of the wetland would be above 1.3 mgL(-1), which is well above the targeted P level in the water column of the Lake Okeechobee, one of the main water bodies in the area (0.04 mg PL(-1)). This suggests construction of wetlands in agricultural lands could result to substantial internal P loading. However, preventative measures including chemical amendments, establishment of vegetative communities or flushing the initially released P may potentially stabilize the system, and maintain P removal efficiency.
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DeBusk WF, Reddy KR. Nutrient and hydrology effects on soil respiration in a northern Everglades marsh. JOURNAL OF ENVIRONMENTAL QUALITY 2003; 32:702-710. [PMID: 12708696 DOI: 10.2134/jeq2003.7020] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
Microbial respiration in peat and overlying plant litter, as influenced by water level and phosphorus enrichment, was evaluated for an Everglades (Florida, USA) marsh ecosystem by measuring CO2 and CH4 release from soil-water microcosms. Intact cores of peat, overlying plant litter, and surface water were collected at seven locations in cattail (Typha domingensis Pers.) and sawgrass (Cladium jamaicense Crantz) stands along a phosphorus (P) enrichment gradient in Water Conservation Area 2A (WCA-2A). Each soil-water microcosm was outfitted with a controlled air circulation system whereby outflow gas from the headspace could be analyzed for CO2 and CH4 to determine flux of C from the soil-water column to the atmosphere. Gaseous C flux was determined for flooded conditions (10-cm water depth) and for water levels of 0, 5, 10, and 15 cm below the peat surface. Overall, decreasing water level resulted in significantly increased C flux, although rates were significantly higher under flooded conditions than under nonflooded, saturated-soil conditions, presumably due to O2 availability associated with algal photosynthesis within the litter layer in the water column. Carbon flux decreased significantly for sites increasingly distant from the primary hydrologic and nutrient inflows to WCA-2A. The microcosm study demonstrated that the C turnover rate was significantly increased by accelerated nutrient loading to the marsh, and was further enhanced by decreasing water level under drained conditions. Our results also demonstrated that photosynthesis within the water column is a potentially important regulator of C mineralization rate in the litter layer of the marsh system.
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Castro H, Reddy KR, Ogram A. Composition and function of sulfate-reducing prokaryotes in eutrophic and pristine areas of the Florida Everglades. Appl Environ Microbiol 2002; 68:6129-37. [PMID: 12450837 PMCID: PMC134442 DOI: 10.1128/aem.68.12.6129-6137.2002] [Citation(s) in RCA: 98] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
As a result of agricultural activities in regions adjacent to the northern boundary of the Florida Everglades, a nutrient gradient developed that resulted in physicochemical and ecological changes from the original system. Sulfate input from agricultural runoff and groundwater is present in soils of the Northern Everglades, and sulfate-reducing prokaryotes (SRP) may play an important role in biogeochemical processes such as carbon cycling. The goal of this project was to utilize culture-based and non-culture-based approaches to study differences between the composition of assemblages of SRP in eutrophic and pristine areas of the Everglades. Sulfate reduction rates and most-probable-number enumerations revealed SRP populations and activities to be greater in eutrophic zones than in more pristine soils. In eutrophic regions, methanogenesis rates were higher, the addition of acetate stimulated methanogenesis, and SRP able to utilize acetate competed to a limited degree with acetoclastic methanogens. A surprising amount of diversity within clone libraries of PCR-amplified dissimilatory sulfite reductase (DSR) genes was observed, and the majority of DSR sequences were associated with gram-positive spore-forming Desulfotomaculum and uncultured microorganisms. Sequences associated with Desulfotomaculum fall into two categories: in the eutrophic regions, 94.7% of the sequences related to Desulfotomaculum were associated with those able to completely oxidize substrates, and in samples from pristine regions, all Desulfotomaculum-like sequences were related to incomplete oxidizers. This metabolic selection may be linked to the types of substrates that Desulfotomaculum spp. utilize; it may be that complete oxidizers are more versatile and likelier to proliferate in nutrient-rich zones of the Everglades. Desulfotomaculum incomplete oxidizers may outcompete complete oxidizers for substrates such as hydrogen in pristine zones where diverse carbon sources are less available.
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Read JJ, Tarpley L, McKinion JM, Reddy KR. Narrow-waveband reflectance ratios for remote estimation of nitrogen status in cotton. JOURNAL OF ENVIRONMENTAL QUALITY 2002; 31:1442-1452. [PMID: 12371160 DOI: 10.2134/jeq2002.1442] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
Abstract
Tailoring nitrogen (N) fertilizer applications to cotton (Gossypium hirsutum L.) in response to leaf N status may optimize N use efficiency and reduce off-site effects of excessive fertilizer use. This study compared leaf and canopy reflectance within the 350 to 950 nm range in order to identify reflectance ratios sensitive to leaf chlorophyll (Chl), and hence N status, in cotton. Plants were grown outdoors in large pots using half-strength Hoagland's (control) solution until some three-row plots received a restricted supply of N. Treatments comprised control, 20% of control N at first flower bud (square) onward; 0 and 20% of control N at first flower onward; and 0% of control N at fruit-filling onward. Despite leaf N values ranging from 51 to 19 g kg-1 across treatments and sampling dates, a weak correlation was obtained between Chl and N (r2 = 0.32, df = 70). In general, N stress led to increased reflectance at 695 +/- 2.5 nm (R695) and decreased reflectance at R410, and changes in leaf N were best correlated with either R695 or R755 in leaves and either R410 or R700 in canopies. The strongest associations between leaf constituent and canopy reflectance ratio were Chl vs. R415/R695 (r2 = 0.72), carotenoids vs. R415/R685 (r2 = 0.79), and N vs. R415/R710 (r2 = 0.70). The R415 measure appears to be a more stable spectral feature under N stress, as compared with more pronounced changes along the reflectance red edge (690-730 nm). Multiple regression identified a three-waveband canopy reflectance model that explained 80% of the variability in leaf N. Results indicate that remote sensing of N status in cotton is feasible using narrow-waveband reflectance ratios that involve the violet or blue region of the spectrum (400 to 450 nm) and the more commonly featured red-edge region.
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Pant HK, Reddy KR, Dierberg FE. Bioavailability of organic phosphorus in a submerged aquatic vegetation-dominated treatment wetland. JOURNAL OF ENVIRONMENTAL QUALITY 2002; 31:1748-1756. [PMID: 12371195 DOI: 10.2134/jeq2002.1748] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
Abstract
Enzymatic hydrolysis and mineralization of organic phosphorus (P) were determined in surface water samples collected from inflow and outflow of a submerged aquatic vegetation (SAV)-dominated treatment wetland of the Florida Everglades. Water samples were fractionated into three size fractions (> 0.4 micron, < 0.4 to > 0.05 micron, and < 0.05 micron) with a sequential flow filtration technique. The fractionated water samples were incubated to hydrolyze with alkaline phosphatase (APase) and phosphodiesterase (PDEase), and to mineralize at different redox and pH. Unlike APase, which hydrolyzed < or = 10% of organic P, PDEase hydrolyzed > or = 71% of organic P in unfiltered water from both inflow and outflow waters, suggesting the domination of bioavailable diester P in the water. Phosphodiesterase completely hydrolyzed organic P in the < 0.4- to > 0.05-micron and < 0.05-micron fractions, as compared with < or = 35% in the > 0.4-micron fraction. However, the P mineralization in inflow and outflow waters at different redox and pH showed that P associated with particulate > 0.4 micron had been mineralized the most. Phosphorus-31 nuclear magnetic resonance (NMR) spectroscopy showed that surficial sediments from the inflow region contained a high proportion of polynucleotides, nucleoside monophosphates, and previously unreported glycerophosphoethanolamine and phosphoenolpyruvates. However, at the outflow, the relative proportion of polynucleotides and nucleoside monophosphates was reduced substantially. This suggests that the SAV wetland may sequester P via accretion of organic matter.
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Pant HK, Nair VD, Reddy KR, Graetz DA, Villapando RR. Influence of flooding on phosphorus mobility in manure-impacted soil. JOURNAL OF ENVIRONMENTAL QUALITY 2002; 31:1399-1405. [PMID: 12175061 DOI: 10.2134/jeq2002.1399] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
Abstract
Agricultural lands are often used for constructing stormwater treatment areas (STAs) to abate nutrient loading to adjacent aquatic systems. Flooding agricultural lands to create STAs could stimulate a significant release of phosphorus (P) from soil to the water column. To assess the suitability of agricultural lands, specifically those impacted by animal operations, for the construction of STAs, soils from different components of the New Palm-Newcomer dairies (Nubbin Slough Basin, Okeechobee, Florida, USA) were collected by horizon and their P retention and release capacities estimated. In general, P released from A-horizon soil under flooded (anaerobic) conditions was greater than under drained (aerobic) conditions due to redox effect on iron (Fe) and consequent P releases. However, the P released from Bh-horizon soil was greater under aerobic conditions than under anaerobic conditions, possibly due to excessive aluminum (Al) content in the horizon. Double acid-extractable calcium (Ca), magnesium (Mg), Al, and P explained 87% of the variability in P release under aerobic conditions, and 80% of that under anaerobic conditions. The P release maxima indicated a high solubility of P in A-horizon soil from both active and abandoned dairies (13 and 8% of the total P, respectively), suggesting that these soils could function as potential sources of P to the overlying water column when used in STA construction. Preestablishment of vegetative communities or chemical amendment, however, could ameliorate high P flux from soil to the water column.
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Sobhonslidsuk A, Neff GW, Molina EG, Yamashiki N, Nishida S, Reddy KR, Tzakis AG, Schiff ER. Prediction of survival outcome of ICU patients awaiting orthotopic liver transplantation. Transplant Proc 2002; 34:1223-5. [PMID: 12072322 DOI: 10.1016/s0041-1345(02)02814-2] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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119
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Nicolaou KC, Reddy KR, Skokotas G, Sato F, Xiao XY, Hwang CK. Total synthesis of hemibrevetoxin B and (7a.alpha.)-epi-hemibrevetoxin B. J Am Chem Soc 2002. [DOI: 10.1021/ja00062a021] [Citation(s) in RCA: 96] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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120
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Nicolaou KC, Reddy KR, Skokotas G, Sato F, Xiao XY. Total synthesis of hemibrevetoxin B. J Am Chem Soc 2002. [DOI: 10.1021/ja00046a063] [Citation(s) in RCA: 61] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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121
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Mehta G, Reddy KR, Gleiter R, Lalitha S, Chandrasekhar J. Roofed polyquinanes: synthesis and electronic structure. J Org Chem 2002. [DOI: 10.1021/jo00025a019] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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123
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Mehta G, Srikrishna A, Rao KS, Reddy KR, Acharya KA, Puranik VG, Tavale SS, Guru Row TN. Novel polyquinanes from a caged hexacyclic [4.4.2]propellane system. J Org Chem 2002. [DOI: 10.1021/jo00379a031] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Abstract
Diagnostic laparoscopy has been in use since the last century. Advances in technology, coupled with increasing evidence of enhanced outcomes following its use, have renewed interest in this modality. Diagnostic laparoscopy guides surgeons in preventing unnecessary laparotomies in settings of acute abdomen, oncologists for accurate staging of malignancies from the esophagus to the colon, and hepatologists in the evaluation of acute as well as chronic liver diseases. Prospective clinical studies are awaited that will allow experimental technological advances, refining the methods of diagnostic laparoscopy, to be translated into more widespread use.
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Cotler SJ, Reddy KR, McCone J, Wolfe DL, Liu A, Craft TR, Ferris MW, Conrad AJ, Albrecht J, Morrissey M, Ganger DR, Rosenblate H, Blatt LM, Jensen DM, Taylor MW. An analysis of acute changes in interleukin-6 levels after treatment of hepatitis C with consensus interferon. J Interferon Cytokine Res 2001; 21:1011-9. [PMID: 11798458 DOI: 10.1089/107999001317205132] [Citation(s) in RCA: 20] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Cytokine production has been implicated in the antiviral response to interferon-alpha (IFN-alpha) in hepatitis C and in the development of IFN-alpha-related side effects. We characterized acute changes in serum cytokine levels following administration of a single dose of consensus IFN (IFN-con1) and during continuous treatment of chronic hepatitis C patients. Serum samples were collected at baseline, at multiple times early after IFN administration, and weekly thereafter. Viral RNA titers were assessed by RT-PCR, and viral kinetics were followed. ELISA assays were used to measure IFN-gamma, tumor necrosis factor-alpha (TNF-alpha), interleukin-2 (IL-2), IL-4, IL-6, and IL-16. Serum cytokine levels were low at baseline. IL-6 was detected in patients with hepatitis C but not in healthy control subjects by either ELISA or RT-PCR, indicating that low levels of circulating IL-6 were associated with hepatitis C infection. None of the cytokines measured increased significantly after IFN administration except for IL-6. IL-6 levels rose rapidly, peaked at 6-15 h in a dose-dependent manner, and returned to baseline by 48 h in both patients receiving a single dose of IFN and those receiving continuous treatment. This was confirmed by RT-PCR. Pretreatment IL-6 levels were directly correlated with area under the curve (AUC) for IL-6 during the 24 h after IFN dosing (r = 0.611, p = 0.007). Viral titers decreased within 24-48 h after a single dose of IFN-con1. Changes in hepatitis C RNA titers were not significantly associated with pretreatment IL-6 levels or with changes in IL-6 levels. In conclusion, (1) baseline serum cytokine levels, except for IL-6, were low or within the normal range in patients with hepatitis C, (2) IL-6 levels were detected in some patients with hepatitis C before treatment but not in healthy controls, (3) IL-6 levels increased acutely after a single dose of IFN-alpha, and IL-6 induction was related to baseline IL-6 level, and (4) changes in IL-6 levels did not correlate with the early virologic response to IFN.
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