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Qiu X, Guo S, Wu H, Chen J, Zhou Q. Identification of Wnt pathway, uPA, PAI-1, MT1-MMP, S100A4 and CXCR4 associated with enhanced metastasis of human large cell lung cancer by DNA microarray. Minerva Med 2012; 103:151-164. [PMID: 22653095] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
Abstract
AIM The aim of this paper was to investigate the differentially expressed genes in large cell lung cancer cell lines with different metastatic potential, and to screen out new candidate genes related to metastasis of lung cancer. METHODS The total RNAs of low and high metastatic large cell lung cancer cell lines (NL9980 and L9981) were extracted and processed, then hybridized to Affymetrix HG U133 Plus 2.0 array. The hybridization signals were scanned and compared to find out the differentially expressed genes. Chosen genes were verified by Western Blot. Bioinformatics were used to analyze the functions and related pathways of the genes. RESULTS There were 933 differentially expressed genes between NL9980 and L9981 cell lines. In the high metastatic cell line L9981, 672 genes were up-regulated and 260 genes were down-regulated compared with the low metastatic cell line NL9980. The differentially expressed genes were mainly associated with binding, catalytic activity, signal transducer activity and transporter activity, and mainly involved in pathways including, pathways in cancer, focal adhesion, regulation of actin cytoskeleton, ECM-receptor interaction. CONCLUSION Differentially expressed genes with the functions including binding, catalytic activity, signal transducer activity and transporter activity may promote metastasis of lung cancer cells through complicated networks including Wnt pathway and metastasis-related genes such as uPA, PAI-1, MT1-MMP, S100A4 and CXCR4.
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Adamson P, Ayres DS, Backhouse C, Barr G, Bishai M, Blake A, Bock GJ, Boehnlein DJ, Bogert D, Cao SV, Childress S, Coelho JAB, Corwin L, Cronin-Hennessy D, Danko IZ, de Jong JK, Devenish NE, Diwan MV, Escobar CO, Evans JJ, Falk E, Feldman GJ, Frohne MV, Gallagher HR, Gomes RA, Goodman MC, Gouffon P, Graf N, Gran R, Grzelak K, Habig A, Hartnell J, Hatcher R, Himmel A, Holin A, Huang X, Hylen J, Irwin GM, Isvan Z, Jaffe DE, James C, Jensen D, Kafka T, Kasahara SMS, Koizumi G, Kopp S, Kordosky M, Kreymer A, Lang K, Ling J, Litchfield PJ, Loiacono L, Lucas P, Mann WA, Marshak ML, Mathis M, Mayer N, Mehdiyev R, Meier JR, Messier MD, Michael DG, Miller WH, Mishra SR, Mitchell J, Moore CD, Mualem L, Mufson S, Musser J, Naples D, Nelson JK, Newman HB, Nichol RJ, Nowak JA, Oliver WP, Orchanian M, Pahlka RB, Paley J, Patterson RB, Pawloski G, Phan-Budd S, Plunkett RK, Qiu X, Radovic A, Ratchford J, Rebel B, Rosenfeld C, Rubin HA, Sanchez MC, Schneps J, Schreckenberger A, Schreiner P, Sharma R, Sousa A, Strait M, Tagg N, Talaga RL, Thomas J, Thomson MA, Tinti G, Toner R, Torretta D, Tzanakos G, Urheim J, Vahle P, Viren B, Walding JJ, Weber A, Webb RC, White C, Whitehead L, Wojcicki SG, Zwaska R. Improved measurement of muon antineutrino disappearance in MINOS. PHYSICAL REVIEW LETTERS 2012; 108:191801. [PMID: 23003026 DOI: 10.1103/physrevlett.108.191801] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/13/2012] [Indexed: 06/01/2023]
Abstract
We report an improved measurement of ν(μ) disappearance over a distance of 735 km using the MINOS detectors and the Fermilab Main Injector neutrino beam in a ν(μ)-enhanced configuration. From a total exposure of 2.95×10(20) protons on target, of which 42% have not been previously analyzed, we make the most precise measurement of Δm2=[2.62(-0.28)(+0.31)(stat)±0.09(syst)]×10(-3) eV2 and constrain the ν(μ) mixing angle sin2(2θ)>0.75 (90% C.L.). These values are in agreement with Δm2 and sin2(2θ) measured for ν(μ), removing the tension reported in [P. Adamson et al. (MINOS), Phys. Rev. Lett. 107, 021801 (2011).].
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Fan H, Chen L, Zhang F, Quan Y, Su X, Qiu X, Zhao Z, Kong KL, Dong S, Song Y, Chan THM, Guan XY. MTSS1, a novel target of DNA methyltransferase 3B, functions as a tumor suppressor in hepatocellular carcinoma. Oncogene 2012; 31:2298-308. [PMID: 21909138 DOI: 10.1038/onc.2011.411] [Citation(s) in RCA: 44] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2011] [Revised: 07/13/2011] [Accepted: 07/20/2011] [Indexed: 01/16/2023]
Abstract
DNA methyltransferase 3B (DNMT3B) mediates gene silencing via epigenetic mechanisms during hepatocellular carcinoma (HCC) progression. We aimed to identify novel targets of DNMT3B and their potential regulatory mechanisms in HCC. Metastasis suppressor 1 (MTSS1) was one of the DNMT3B targets and selected for further study. DNMT3B overexpression was detected in 81.25% of clinical HCC specimens and was negatively associated with MTSS1 in HCC cells and clinical samples. The underlying mechanism by which DNMT3B silences MTSS1 was studied using a combination of methylation-specific polymerase chain reaction (PCR) and bisulfite genome sequencing, chromatin immunoprecipitation-PCR and luciferase reporter assays. We found that the MTSS1 promoter region was sparsely methylated, and the methylation inhibitors failed to abolish DNMT3B-mediated MTSS1 silencing. DNMT3B protein bound directly to the 5'-flanking region (-865/-645) of the MTSS1 gene to inhibit its transcription. The functional role of MTSS1 was investigated using in vitro and in vivo tumorigenicity assays. As a result, MTSS1 exerted tumor suppressor effects and arrested cells in the G2/M phase, but not the G1/S phase of the cell cycle when it was depleted or overexpressed in HCC cells. Taken together, MTSS1, a novel target of DNMT3B, is repressed by DNMT3B via a DNA methylation-independent mechanism. MTSS1 was further characterized as a novel tumor suppressor gene in HCC. These findings highlight how DNMT3B regulates MTSS1, and such data may be useful for the development of new treatment options for HCC.
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Sun C, Lin H, Yu W, Li X, Chen Y, Qiu X, Wang R, Dai Y. Neurotrophic effect of bone marrow mesenchymal stem cells for erectile dysfunction in diabetic rats. ACTA ACUST UNITED AC 2012; 35:601-7. [PMID: 22428616 DOI: 10.1111/j.1365-2605.2012.01250.x] [Citation(s) in RCA: 55] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
It has been demonstrated that intracavernous injection of bone marrow-derived mesenchymal stem cells (BM-MSCs) had beneficial effects on improving erectile function in type-1 diabetic rats. This study was designed to investigate the neurotrophic effect of BM-MSCs for type-1 diabetic rats. Streptozocin-induced type-1 diabetic rats were randomly divided into three groups: diabetic group, BM-MSCs-treated group and BM-MSCs-conditioned medium-treated group. At the 3d, 1 and 2w time points after BM-MSCs injection, three randomly selected rats in MSCs group were sacrificed and penile samples were harvested to detect BM-MSCs in penile tissue. Four weeks after intracavernous injection of BM-MSCs or BM-MSCs-conditioned medium, intracavernous pressure (ICP) was assessed to evaluate the erectile function. Immunohistochemistry was used to track labelled BM-MSCs in penile tissue and to detect neuronal nitric oxide synthase (nNOS) and neurofilament (NF) positive fibres in penile dorsal nerve. Enzyme lined immunosorbent assay (ELISA) was used to measure the concentrations of vascular endothelial growth factor (VEGF), nerve growth factor (NGF) and brain-derived neurotrophic factor (BDNF) in BM-MSCs-conditioned medium. BM- MSCs secreted detectable levels of VEGF, BDNF and NGF. Intracavernous injection of BM-MSCs improved erectile function in diabetic rats. The functional improvement was accompanied by promoted nNOS and NF positive nerve fibres within penile dorsal nerve in type-1 diabetic rats. Histological data revealed a time-dependent decrease in the number of BM-MSCs in the corpus cavernosum following injection. Furthermore, the beneficial effect of BM-MSCs was partially repeated by BM-MSCs-conditioned medium. Intracavernous injection of BM-MSCs is effective in improving nerve regeneration in diabetic rats. Paracrine effects of BM-MSCs are probably involved in the improvement.
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Qiu X, Liu ZP. Recent developments of peptidomimetic HIV-1 protease inhibitors. Curr Med Chem 2012; 18:4513-37. [PMID: 21864279 DOI: 10.2174/092986711797287566] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2011] [Revised: 08/05/2011] [Accepted: 08/07/2011] [Indexed: 01/05/2023]
Abstract
HIV protease plays a crucial role in the viral life cycle by processing the viral Gag and Gag-Pol polyproteins into structural and functional proteins essential for viral maturation. Inhibition of HIV-1 protease leads to the production of noninfectious virus particles and hence is an important therapeutic target for antiviral therapy in AIDS patients. Among many strategies to combat this disease, highly active antiretroviral therapy (HAART) with HIV protease inhibitors (PIs) in combination with reverse transcriptase inhibitors and fusion inhibitor continues to be the first line treatment for control of HIV infection. However, the rapid emergence of drug-resistant HIV-1 strains and the appearance of cross-resistance are severely limiting the long-term treatment options. Thus, numerous efforts have been made in the design and synthesis of novel protease inhibitors with broad-spectrum activity against multidrug-resistant HIV-1 variants by medicinal chemists. This review will focus on the substrate-based drug design of novel peptidomimetic PIs in recent years since 2006.
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Hart RW, Mauk MG, Liu C, Qiu X, Thompson JA, Chen D, Malamud D, Abrams WR, Bau HH. Point-of-care oral-based diagnostics. Oral Dis 2011; 17:745-52. [PMID: 21521419 PMCID: PMC4273652 DOI: 10.1111/j.1601-0825.2011.01808.x] [Citation(s) in RCA: 44] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Abstract
Many of the target molecules that reside in blood are also present in oral fluids, albeit at lower concentrations. Oral fluids are, however, relatively easy and safe to collect without the need for specialized equipment and training. Thus, oral fluids provide convenient samples for medical diagnostics. Recent advances in lab-on-a-chip technologies have made minute, fully integrated diagnostic systems practical for an assortment of point-of-care tests. Such systems can perform either immunoassays or molecular diagnostics outside centralized laboratories within time periods ranging from minutes to an hour. The article briefly reviews recent advances in devices for point-of-care testing with a focus on work that has been carried out by the authors as part of a NIH program.
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Adamson P, Auty DJ, Ayres DS, Backhouse C, Barr G, Betancourt M, Bishai M, Blake A, Bock GJ, Boehnlein DJ, Bogert D, Cao SV, Cavanaugh S, Cherdack D, Childress S, Coelho JAB, Corwin L, Cronin-Hennessy D, Danko IZ, de Jong JK, Devenish NE, Diwan MV, Dorman M, Escobar CO, Evans JJ, Falk E, Feldman GJ, Frohne MV, Gallagher HR, Gomes RA, Goodman MC, Gouffon P, Graf N, Gran R, Grzelak K, Habig A, Hartnell J, Hatcher R, Himmel A, Holin A, Huang X, Hylen J, Irwin GM, Isvan Z, Jaffe DE, James C, Jensen D, Kafka T, Kasahara SMS, Koizumi G, Kopp S, Kordosky M, Kreymer A, Lang K, Lefeuvre G, Ling J, Litchfield PJ, Loiacono L, Lucas P, Mann WA, Marshak ML, Mathis M, Mayer N, McGowan AM, Mehdiyev R, Meier JR, Messier MD, Michael DG, Miller WH, Mishra SR, Mitchell J, Moore CD, Mualem L, Mufson S, Musser J, Naples D, Nelson JK, Newman HB, Nichol RJ, Nowak JA, Ochoa-Ricoux JP, Oliver WP, Orchanian M, Paley J, Patterson RB, Pawloski G, Pearce GF, Phan-Budd S, Plunkett RK, Qiu X, Ratchford J, Rebel B, Rosenfeld C, Rubin HA, Sanchez MC, Schneps J, Schreckenberger A, Schreiner P, Shanahan P, Sharma R, Sousa A, Tagg N, Talaga RL, Thomas J, Thomson MA, Toner R, Torretta D, Tzanakos G, Urheim J, Vahle P, Viren B, Walding JJ, Weber A, Webb RC, White C, Whitehead L, Wojcicki SG, Yang T, Zwaska R. Improved search for Muon-neutrino to electron-neutrino oscillations in MINOS. PHYSICAL REVIEW LETTERS 2011; 107:181802. [PMID: 22107623 DOI: 10.1103/physrevlett.107.181802] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/29/2011] [Indexed: 05/31/2023]
Abstract
We report the results of a search for ν(e) appearance in a ν(μ) beam in the MINOS long-baseline neutrino experiment. With an improved analysis and an increased exposure of 8.2 × 10(20) protons on the NuMI target at Fermilab, we find that 2 sin(2) (θ(23))sin(2)(2θ(13))<0.12(0.20) at 90% confidence level for δ = 0 and the normal (inverted) neutrino mass hierarchy, with a best-fit of 2sin(2) (θ(23))sin(2)(2θ(13)) = 0.041(-0.031)(+0.047) (0.079(-0.053) (+0.071)). The θ(13) = 0 hypothesis is disfavored by the MINOS data at the 89% confidence level.
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Adamson P, Auty DJ, Ayres DS, Backhouse C, Barr G, Bishai M, Blake A, Bock GJ, Boehnlein DJ, Bogert D, Cao SV, Cavanaugh S, Cherdack D, Childress S, Choudhary BC, Coelho JAB, Coleman SJ, Corwin L, Cronin-Hennessy D, Danko IZ, de Jong JK, Devenish NE, Diwan MV, Dorman M, Escobar CO, Evans JJ, Falk E, Feldman GJ, Frohne MV, Gallagher HR, Gomes RA, Goodman MC, Gouffon P, Graf N, Gran R, Grant N, Grzelak K, Habig A, Hartnell J, Hatcher R, Himmel A, Holin A, Howcroft C, Huang X, Hylen J, Irwin GM, Isvan Z, Jaffe DE, James C, Jensen D, Kafka T, Kasahara SMS, Koizumi G, Kopp S, Kordosky M, Kreymer A, Lang K, Lefeuvre G, Ling J, Litchfield PJ, Loiacono L, Lucas P, Mann WA, Marshak ML, Mathis M, Mayer N, Mehdiyev R, Meier JR, Messier MD, Michael DG, Miller WH, Mishra SR, Mitchell J, Moore CD, Mualem L, Mufson S, Musser J, Naples D, Nelson JK, Newman HB, Nichol RJ, Nowak JA, Ochoa-Ricoux JP, Oliver WP, Orchanian M, Pahlka R, Paley J, Patterson RB, Pawloski G, Pearce GF, Phan-Budd S, Plunkett RK, Qiu X, Ratchford J, Rebel B, Rosenfeld C, Rubin HA, Sanchez MC, Schneps J, Schreckenberger A, Schreiner P, Sharma R, Sousa A, Strait M, Tagg N, Talaga RL, Tavera MA, Thomas J, Thomson MA, Tinti G, Toner R, Torretta D, Tzanakos G, Urheim J, Vahle P, Viren B, Walding JJ, Weber A, Webb RC, White C, Whitehead L, Wojcicki SG, Yang T, Zwaska R. Search for the disappearance of muon antineutrinos in the NuMI neutrino beam. Int J Clin Exp Med 2011. [DOI: 10.1103/physrevd.84.071103] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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Zhou Y, Qiu X, Luo Y, Yuan J, Li Y, Zhong Q, Zhao M, Lu Q. Histone modifications and methyl-CpG-binding domain protein levels at the TNFSF7 (CD70) promoter in SLE CD4+ T cells. Lupus 2011; 20:1365-71. [PMID: 21865261 DOI: 10.1177/0961203311413412] [Citation(s) in RCA: 59] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
Abstract: In systemic lupus erythematosus (SLE), T lymphocytes overexpress CD70 ( TNFSF7 gene), leading to the synthesis of autoreactive IgGs. CD70 upregulation in SLE CD4+ T cells is associated with hypomethylation of TNFSF7 promoter. In this study, we explored histone modifications in the TNFSF7 promoter region in SLE CD4+ T cells, and characterized the effects of a DNA methyltransferase inhibitor (5-azaC) and a histone deacetylase inhibitor (TSA) on CD70 expression. We found that CD70 mRNA was significantly increased in active lupus CD4+ T cells, and in control cells treated with 5-azaC, TSA, or both. Histone H3 acetylation and dimethylated H3 lysine 4 (H3K4me2) levels were significantly elevated in patients with lupus, and both factors correlated positively with disease activity. MeCP2 protein levels within the TNFSF7 promoter decreased in patients with active lupus. Treatment of CD4+ T cells with 5-azaC alone significantly raised H3K4 dimethyl levels at the TNFSF7 locus. TSA treatment significantly increased H3 and H4 acetylation levels, as well as levels of H3K4 dimethylation at the TNFSF7 locus. Treatment with 5-azaC plus TSA enhanced H3 acetylation levels. These findings indicate that aberrant histone modifications within the TNFSF7 promoter may contribute to the development of lupus by increasing CD70 expression in CD4+ T cells.
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Lin G, Qiu X, Fandel T, Banie L, Wang G, Lue TF, Lin CS. Tracking intracavernously injected adipose-derived stem cells to bone marrow. Int J Impot Res 2011; 23:268-75. [PMID: 21796145 PMCID: PMC3516363 DOI: 10.1038/ijir.2011.38] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
Abstract
Intracavernous (IC) injection of stem cells (SCs) has been shown to improve erectile function in various erectile dysfunction (ED) animal models. However, the tissue distribution of the injected cells remains unknown. In this study we tracked IC injected adipose-derived stem cells (ADSCs) in various tissues. Rat paratesticular fat was processed for ADSC isolation and culture. The animals were then subject to cavernous nerve (CN) crush injury or sham operation, followed by IC injection of one million autologous or allogeneic ADSCs that were labeled with 5-ethynyl-2-deoxyuridine (EdU). Another group of rats received IC injection of EdU-labeled allogeneic penile smooth muscle cells (PSMCs). At 2 and 7 days post-injection, penises and femoral bone marrow were processed for histological analyses. Whole femoral bone marrows were also analyzed for EdU-positive cells by flow cytometry. The results show that ADSCs exited the penis within days of IC injection and migrated preferentially to bone marrow. Allogenicity did not affect ADSC's bone marrow appearance either at 2 or 7 days, while CN injury reduced the number of ADSCs in bone marrow significantly at 7 but not 2 days. The significance of these results in relation to SC therapy for ED is discussed.
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Adamson P, Andreopoulos C, Auty DJ, Ayres DS, Backhouse C, Barr G, Bishai M, Blake A, Bock GJ, Boehnlein DJ, Bogert D, Cavanaugh S, Cherdack D, Childress S, Choudhary BC, Coelho JAB, Coleman SJ, Corwin L, Cronin-Hennessy D, Danko IZ, de Jong JK, Devenish NE, Diwan MV, Dorman M, Escobar CO, Evans JJ, Falk E, Feldman GJ, Frohne MV, Gallagher HR, Gomes RA, Goodman MC, Gouffon P, Graf N, Gran R, Grant N, Grzelak K, Habig A, Harris D, Hartnell J, Hatcher R, Himmel A, Holin A, Howcroft C, Huang X, Hylen J, Ilic J, Irwin GM, Isvan Z, Jaffe DE, James C, Jensen D, Kafka T, Kasahara SMS, Koizumi G, Kopp S, Kordosky M, Kreymer A, Lang K, Lefeuvre G, Ling J, Litchfield PJ, Loiacono L, Lucas P, Mann WA, Marshak ML, Mayer N, McGowan AM, Mehdiyev R, Meier JR, Messier MD, Miller WH, Mishra SR, Mitchell J, Moore CD, Morfín J, Mualem L, Mufson S, Musser J, Naples D, Nelson JK, Newman HB, Nichol RJ, Nicholls TC, Nowak JA, Ochoa-Ricoux JP, Oliver WP, Orchanian M, Ospanov R, Paley J, Patterson RB, Pawloski G, Pearce GF, Petyt DA, Phan-Budd S, Plunkett RK, Qiu X, Ratchford J, Raufer TM, Rebel B, Rodrigues PA, Rosenfeld C, Rubin HA, Sanchez MC, Schneps J, Schreiner P, Shanahan P, Sousa A, Stamoulis P, Strait M, Tagg N, Talaga RL, Tetteh-Lartey E, Thomas J, Thomson MA, Tinti G, Toner R, Tzanakos G, Urheim J, Vahle P, Viren B, Weber A, Webb RC, White C, Whitehead L, Wojcicki SG, Yang T, Zwaska R. First direct observation of muon antineutrino disappearance. PHYSICAL REVIEW LETTERS 2011; 107:021801. [PMID: 21797594 DOI: 10.1103/physrevlett.107.021801] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/02/2011] [Indexed: 05/31/2023]
Abstract
This Letter reports the first direct observation of muon antineutrino disappearance. The MINOS experiment has taken data with an accelerator beam optimized for ν(μ) production, accumulating an exposure of 1.71 × 10²⁰ protons on target. In the Far Detector, 97 charged current ν(μ) events are observed. The no-oscillation hypothesis predicts 156 events and is excluded at 6.3σ. The best fit to oscillation yields |Δm²| = [3.36(-0.40)(+0.46)(stat) ± 0.06(syst)] × 10⁻³ eV², sin²(2θ) = 0.86(-0.12)(+0.11)(stat) ± 0.01(syst). The MINOS ν(μ) and ν(μ) measurements are consistent at the 2.0% confidence level, assuming identical underlying oscillation parameters.
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Adamson P, Auty DJ, Ayres DS, Backhouse C, Barr G, Bishai M, Blake A, Bock GJ, Boehnlein DJ, Bogert D, Cavanaugh S, Cherdack D, Childress S, Coelho JAB, Coleman SJ, Corwin L, Cronin-Hennessy D, Danko IZ, de Jong JK, Devenish NE, Diwan MV, Dorman M, Escobar CO, Evans JJ, Falk E, Feldman GJ, Frohne MV, Gallagher HR, Gomes RA, Goodman MC, Gouffon P, Graf N, Gran R, Grant N, Grzelak K, Habig A, Harris D, Hartnell J, Hatcher R, Himmel A, Holin A, Huang X, Hylen J, Ilic J, Irwin GM, Isvan Z, Jaffe DE, James C, Jensen D, Kafka T, Kasahara SMS, Koizumi G, Kopp S, Kordosky M, Kreymer A, Lang K, Lefeuvre G, Ling J, Litchfield PJ, Loiacono L, Lucas P, Mann WA, Marshak ML, Mayer N, McGowan AM, Mehdiyev R, Meier JR, Messier MD, Miller WH, Mishra SR, Mitchell J, Moore CD, Morfín J, Mualem L, Mufson S, Musser J, Naples D, Nelson JK, Newman HB, Nichol RJ, Nicholls TC, Nowak JA, Oliver WP, Orchanian M, Paley J, Patterson RB, Pawloski G, Pearce GF, Petyt DA, Phan-Budd S, Pittam R, Plunkett RK, Qiu X, Ratchford J, Raufer TM, Rebel B, Rodrigues PA, Rosenfeld C, Rubin HA, Sanchez MC, Schneps J, Schreiner P, Sharma R, Shanahan P, Sousa A, Stamoulis P, Strait M, Tagg N, Talaga RL, Tetteh-Lartey E, Thomas J, Thomson MA, Tinti G, Toner R, Torretta D, Tzanakos G, Urheim J, Vahle P, Viren B, Walding JJ, Weber A, Webb RC, White C, Whitehead L, Wojcicki SG, Zwaska R. Active to sterile neutrino mixing limits from neutral-current interactions in MINOS. PHYSICAL REVIEW LETTERS 2011; 107:011802. [PMID: 21797535 DOI: 10.1103/physrevlett.107.011802] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/19/2011] [Indexed: 05/31/2023]
Abstract
Results are reported from a search for active to sterile neutrino oscillations in the MINOS long-baseline experiment, based on the observation of neutral-current neutrino interactions, from an exposure to the NuMI neutrino beam of 7.07×10(20) protons on target. A total of 802 neutral-current event candidates is observed in the Far Detector, compared to an expected number of 754 ± 28(stat) ± 37(syst) for oscillations among three active flavors. The fraction f(s) of disappearing ν(μ) that may transition to ν(s) is found to be less than 22% at the 90% C.L.
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Adamson P, Andreopoulos C, Armstrong R, Auty DJ, Ayres DS, Backhouse C, Barr G, Bishai M, Blake A, Bock GJ, Boehnlein DJ, Bogert D, Cavanaugh S, Cherdack D, Childress S, Choudhary BC, Coelho JAB, Coleman SJ, Corwin L, Cronin-Hennessy D, Danko IZ, de Jong JK, Devenish NE, Diwan MV, Dorman M, Escobar CO, Evans JJ, Falk E, Feldman GJ, Frohne MV, Gallagher HR, Gomes RA, Goodman MC, Gouffon P, Graf N, Gran R, Grant N, Grzelak K, Habig A, Harris D, Hartnell J, Hatcher R, Himmel A, Holin A, Huang X, Hylen J, Ilic J, Irwin GM, Isvan Z, Jaffe DE, James C, Jensen D, Kafka T, Kasahara SMS, Koizumi G, Kopp S, Kordosky M, Kreymer A, Lang K, Lefeuvre G, Ling J, Litchfield PJ, Litchfield RP, Loiacono L, Lucas P, Mann WA, Marshak ML, Mayer N, McGowan AM, Mehdiyev R, Meier JR, Messier MD, Michael DG, Miller WH, Mishra SR, Mitchell J, Moore CD, Morfín J, Mualem L, Mufson S, Musser J, Naples D, Nelson JK, Newman HB, Nichol RJ, Nowak JA, Oliver WP, Orchanian M, Ospanov R, Paley J, Patterson RB, Pawloski G, Pearce GF, Petyt DA, Phan-Budd S, Plunkett RK, Qiu X, Ratchford J, Raufer TM, Rebel B, Rodrigues PA, Rosenfeld C, Rubin HA, Sanchez MC, Schneps J, Schreiner P, Shanahan P, Smith C, Sousa A, Stamoulis P, Strait M, Tagg N, Talaga RL, Thomas J, Thomson MA, Tinti G, Toner R, Tzanakos G, Urheim J, Vahle P, Viren B, Weber A, Webb RC, White C, Whitehead L, Wojcicki SG, Yang T, Zwaska R. Measurement of the neutrino mass splitting and flavor mixing by MINOS. PHYSICAL REVIEW LETTERS 2011; 106:181801. [PMID: 21635083 DOI: 10.1103/physrevlett.106.181801] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/02/2011] [Indexed: 05/30/2023]
Abstract
Measurements of neutrino oscillations using the disappearance of muon neutrinos from the Fermilab NuMI neutrino beam as observed by the two MINOS detectors are reported. New analysis methods have been applied to an enlarged data sample from an exposure of 7.25×10(20) protons on target. A fit to neutrino oscillations yields values of |Δm(2)|=(2.32(-0.08)(+0.12))×10(-3) eV(2) for the atmospheric mass splitting and sin(2)(2θ)>0.90 (90% C.L.) for the mixing angle. Pure neutrino decay and quantum decoherence hypotheses are excluded at 7 and 9 standard deviations, respectively.
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Ahmed Z, Akerib DS, Arrenberg S, Bailey CN, Balakishiyeva D, Baudis L, Bauer DA, Brink PL, Bruch T, Bunker R, Cabrera B, Caldwell DO, Cooley J, do Couto e Silva E, Cushman P, Daal M, DeJongh F, Di Stefano P, Dragowsky MR, Duong L, Fallows S, Figueroa-Feliciano E, Filippini J, Fox J, Fritts M, Golwala SR, Hall J, Hennings-Yeomans R, Hertel SA, Holmgren D, Hsu L, Huber ME, Kamaev O, Kiveni M, Kos M, Leman SW, Liu S, Mahapatra R, Mandic V, McCarthy KA, Mirabolfathi N, Moore D, Nelson H, Ogburn RW, Phipps A, Pyle M, Qiu X, Ramberg E, Rau W, Reisetter A, Resch R, Saab T, Sadoulet B, Sander J, Schnee RW, Seitz DN, Serfass B, Sundqvist KM, Tarka M, Wikus P, Yellin S, Yoo J, Young BA, Zhang J. Results from a low-energy analysis of the CDMS II germanium data. PHYSICAL REVIEW LETTERS 2011; 106:131302. [PMID: 21517371 DOI: 10.1103/physrevlett.106.131302] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/24/2010] [Indexed: 05/30/2023]
Abstract
We report results from a reanalysis of data from the Cryogenic Dark Matter Search (CDMS II) experiment at the Soudan Underground Laboratory. Data taken between October 2006 and September 2008 using eight germanium detectors are reanalyzed with a lowered, 2 keV recoil-energy threshold, to give increased sensitivity to interactions from weakly interacting massive particles (WIMPs) with masses below ∼10 GeV/c(2). This analysis provides stronger constraints than previous CDMS II results for WIMP masses below 9 GeV/c(2) and excludes parameter space associated with possible low-mass WIMP signals from the DAMA/LIBRA and CoGeNT experiments.
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140
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Adamson P, Andreopoulos C, Auty DJ, Ayres DS, Backhouse C, Barr G, Barrett WL, Bhattarai P, Bishai M, Blake A, Bock GJ, Boehnlein DJ, Bogert D, Budd S, Cavanaugh S, Cherdack D, Childress S, Choudhary BC, Coelho JAB, Coleman SJ, Corwin L, Cronin-Hennessy D, Damiani D, Danko IZ, de Jong JK, Devenish NE, Diwan MV, Dorman M, Escobar CO, Evans JJ, Falk E, Feldman GJ, Fields TH, Frohne MV, Gallagher HR, Gomes RA, Goodman MC, Gouffon P, Graf N, Gran R, Grant N, Grzelak K, Habig A, Harris D, Harris PG, Hartnell J, Hatcher R, Himmel A, Holin A, Huang X, Hylen J, Ilic J, Irwin GM, Isvan Z, Jaffe DE, James C, Jensen D, Kafka T, Kasahara SMS, Koizumi G, Kopp S, Kordosky M, Krahn Z, Kreymer A, Lang K, Lefeuvre G, Ling J, Litchfield PJ, Loiacono L, Lucas P, Mann WA, Marshak ML, Mayer N, McGowan AM, Mehdiyev R, Meier JR, Messier MD, Michael DG, Miller WH, Mishra SR, Mitchell J, Moore CD, Morfín J, Mualem L, Mufson S, Musser J, Naples D, Nelson JK, Newman HB, Nichol RJ, Nowak JA, Oliver WP, Orchanian M, Paley J, Patterson RB, Pawloski G, Pearce GF, Pittam R, Plunkett RK, Qiu X, Ratchford J, Raufer TM, Rebel B, Reichenbacher J, Rodrigues PA, Rosenfeld C, Rubin HA, Ryabov VA, Sanchez MC, Saoulidou N, Schneps J, Schreiner P, Shanahan P, Sousa A, Strait M, Tagg N, Talaga RL, Thomas J, Thomson MA, Tinti G, Toner R, Tzanakos G, Urheim J, Vahle P, Viren B, Weber A, Webb RC, White C, Whitehead L, Wojcicki SG, Wright DM, Yang T, Zwaska R. Measurement of the underground atmospheric muon charge ratio using the MINOS Near Detector. Int J Clin Exp Med 2011. [DOI: 10.1103/physrevd.83.032011] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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141
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Qiu X, Sun C, Yu W, Lin H, Sun Z, Chen Y, Wang R, Dai Y. Combined Strategy of Mesenchymal Stem Cell Injection With Vascular Endothelial Growth Factor Gene Therapy for the Treatment of Diabetes-Associated Erectile Dysfunction. ACTA ACUST UNITED AC 2011; 33:37-44. [DOI: 10.2164/jandrol.110.012666] [Citation(s) in RCA: 66] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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142
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White AB, Galbiati F, Givogri MI, Lopez Rosas A, Qiu X, van Breemen R, Bongarzone ER. Persistence of psychosine in brain lipid rafts is a limiting factor in the therapeutic recovery of a mouse model for Krabbe disease. J Neurosci Res 2010; 89:352-64. [PMID: 21259322 DOI: 10.1002/jnr.22564] [Citation(s) in RCA: 49] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2010] [Revised: 10/18/2010] [Accepted: 10/30/2010] [Indexed: 11/10/2022]
Abstract
Sphingolipids are intrinsic components of membrane lipid rafts. The abnormal accumulation of these molecules may introduce architectural and functional changes in these domains, leading to cellular dysfunction. Galactosylsphingosine (psychosine) is a pathogenic lipid raft-associated molecule whose accumulation leads to brain deterioration and irreversible neurological handicap in the incurable leukodystrophy Krabbe disease (KD). The relevance of clearing excessive levels of pathogenic psychosine from lipid rafts in therapy for KD has not been investigated. The work presented here demonstrates that psychosine inhibits raft-mediated endocytosis in neural cells. In addition, although in vitro enzyme reconstitution is sufficient for the reversal of related endocytic defects in affected neural cells, traditional in vivo enzyme therapies in the mouse model of KD appear to be insufficient for complete removal of pathogenic levels of raft-associated psychosine. This work describes a mechanism that may contribute to limiting the in vivo efficacy of traditional therapies for KD.
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143
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Pan G, Yan G, Song X, Qiu X. BP neural network classification for bleeding detection in wireless capsule endoscopy. J Med Eng Technol 2010; 33:575-81. [PMID: 19639509 DOI: 10.1080/03091900903111974] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
Abstract
Bleeding in the digestive tract is one of the most common gastrointestinal tract (GI) diseases, as well as the complication of some fatal diseases. Wireless capsule endoscopy (WCE) allows physicians to noninvasively examine the entire GI tract. However it is very laborious and time-consuming to inspect large numbers of WCE images, which limits the wider application of WCE. It is therefore important to develop an automatic and intelligent computer-aided bleeding detection technique. In this paper, a new method aimed at bleeding detection in WCE images is proposed. Colour texture features distinguishing the bleeding regions from non-bleeding regions are extracted in RGB and HSI colour spaces; then a neural network using the colour texture features as the feature vector inputs is designed to recognize the bleeding regions. The experiments demonstrate that the bleeding regions can be correctly recognized and clearly marked out. The sensitivity of the algorithm is 93% and the specificity is 96%.
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144
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Guo G, Qiu X, Wang S, Chen Y, Rothman PB, Wang Z, Chen Y, Wang G, Chen JL. Oncogenic E17K mutation in the pleckstrin homology domain of AKT1 promotes v-Abl-mediated pre-B-cell transformation and survival of Pim-deficient cells. Oncogene 2010; 29:3845-53. [PMID: 20440266 DOI: 10.1038/onc.2010.149] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Abstract
Abl-mediated transformation requires the activation of multiple pathways involved in the cellular proliferation and survival, including PI3K/AKT and JAK/STAT-dependent Pim kinases. Recently, the E17K mutation in the AKT1 has been associated with multiple human malignancies and leukemia in mice. However, this mutation has not been identified in Abl-transformed cells. We investigated the presence of the AKT1(E17K) mutation in v-Abl-transformed cell clones. AKT1(E17K) was detected in 3 (2.6%) of 116 specimens examined. To show the involvement of AKT1(E17K) directly in v-Abl-mediated tumorigenesis, we infected bone marrow cells from mice with bicistronic retroviruses encoding v-Abl and either wild-type or the mutant AKT1. Interestingly, we found that E17K mutant greatly increased the v-Abl transformation efficiency as compared with wild-type AKT1. Ectopic expression of E17K mutant increased the expression levels of antiapoptotic protein BCL2 and phosphorylation levels of proapoptotic protein BAD. This correlated with an increased protection from imatinib-induced apoptosis in Abl transformants. Furthermore, AKT1(E17K) promotes survival of the Pim-deficient cells, indicating a functional link between AKT and Pim in v-Abl transformation. In addition, AKT1(E17K) delays loss of Pim-1 and Pim-2 protein levels on v-Abl inactivation, which suggests that there exists reciprocal signaling between AKT and Pim in v-Abl transformants.
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145
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Aziz K, Ma X, Singhal N, McMillan D, Lockyer J, Qiu X, Du L, Lee SK. The Acute Care Of At-Risk Newborns (Acorn) Program Improves Learner Outcomes In Rural China. Paediatr Child Health 2010. [DOI: 10.1093/pch/15.suppl_a.15aa] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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146
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Qiu X, Jefferies A, Chiu A, Macartney J, Osiovich H, Simmons B, Lee S. Trainees' Perspectives On An in ternational Training Program in Neonatal-Perinatal Medicine in Shanghai. Paediatr Child Health 2010. [DOI: 10.1093/pch/15.suppl_a.60a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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147
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Dong JK, Zhou SY, Guan TY, Zhang H, Dai YF, Qiu X, Wang XF, He Y, Chen XH, Li SY. Quantum criticality and nodal superconductivity in the FeAs-based superconductor KFe2As2. PHYSICAL REVIEW LETTERS 2010; 104:087005. [PMID: 20366962 DOI: 10.1103/physrevlett.104.087005] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/04/2010] [Indexed: 05/29/2023]
Abstract
The in-plane resistivity rho and thermal conductivity kappa of the FeAs-based superconductor KFe2As2 single crystal were measured down to 50 mK. We observe non-Fermi-liquid behavior rho(T) approximately T{1.5} at H{c{2}}=5 T, and the development of a Fermi liquid state with rho(T) approximately T{2} when further increasing the field. This suggests a field-induced quantum critical point, occurring at the superconducting upper critical field H{c{2}}. In zero field, there is a large residual linear term kappa{0}/T, and the field dependence of kappa_{0}/T mimics that in d-wave cuprate superconductors. This indicates that the superconducting gaps in KFe2As2 have nodes, likely d-wave symmetry. Such a nodal superconductivity is attributed to the antiferromagnetic spin fluctuations near the quantum critical point.
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148
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Qiu J, Zhang Y, Guo X, Zeng F, Zhao C, Qiu X, Wu X. Quantitation of thyroid-stimulating hormone receptor mRNA with real-time PCR for early diagnosis of papillary thyroid microcarcinoma. Neoplasma 2010; 57:360-364. [PMID: 20429628] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/29/2023]
Abstract
UNLABELLED Recently, the value of thyroid-stimulating hormone receptor(TSHR) mRNA as a molecular marker in diagnosis of thyroid cancer has been greatly explored. However, its role in detecting thyroid microcarcinoma has never been reported. In this study, we aim to investigate the value of TSHR mRNA in diagnosis of papillary thyroid microcarcinoma(PTMC). To do that, TSHR mRNA levels were measured by real time PCR in 30 healthy subjects and 72 patients (benign thyroid nodules, n=38; PTMC, n=34). TSHR mRNA levels were then compared with cancer volume in surgical specimen. We found that TSHR mRNA levels in PTMC were significantly higher than benign thyroid nodules(P<0.01). At a cutoff value of 0.71 ng/microg total RNA, the TSHR mRNA correctly classified 77.8% of patients preoperatively (sensitivity= 76.5%; specificity= 79.4%). Comparatively, it performed better in larger PTMC of 0.5-1.0 cm than <0.5 cm(sensitivity, 83.4% vs 72.4%; specificity, 88.5% vs 74.1%). Combining TSHR mRNA and ultra sound examination correctly detect 97.1% of PTMC and could spared surgery in 86.8% of patients with benign thyroid nodules. Thus, TSHR mRNA measured with real time PCR enhances the preoperative detection of PTMC in patients with thyroid nodules, which dramatically reduces unnecessary surgeries. KEYWORDS thyroid-stimulating hormone receptor, papillary thyroid microcarcinoma, diagnosis.
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149
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Van Gelder RN, Lamprecht T, Mawad K, Sexton T, Qiu X. Mechanisms of murine melanopsin-mediated photoreception. J Vis 2009. [DOI: 10.1167/9.14.25] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022] Open
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150
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Lei W, Luo Y, Lei W, Luo Y, Yan K, Zhao S, Li Y, Qiu X, Zhou Y, Long H, Zhao M, Liang Y, Su Y, Lu Q. Abnormal DNA methylation in CD4+ T cells from patients with systemic lupus erythematosus, systemic sclerosis, and dermatomyositis. Scand J Rheumatol 2009; 38:369-74. [DOI: 10.1080/03009740902758875] [Citation(s) in RCA: 149] [Impact Index Per Article: 9.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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