Rigid Calix[4]arene as a Building Block for the Synthesis of New Quaternary Ammonium Cation Receptors

Long Range Electronic Effects on the Host-Guest Complexation within the Oxygen Depleted 5,5'-Bicalixarene Cavities

We report the synthesis of a series of the oxygen-depleted conjugated 5,5'-Bicalix[4]arene compounds bearing various substituents at the terminal positions of the conjugated chain and their fluorescence response to the presence of a cationic N-methylpyridinium guest. The complexation of this cation within the bicalixarene cavity results in the fluorescence quenching, with the host molecules bearing electron-donating groups demonstrating a stronger fluorescence response. These results show the importance of the electronic effects on the host-guest complexation within the hydrophobic calixarene scaffolds.

Electronic Tuning of Host-Guest Interactions within the Cavities of Fluorophore-Appended Calix[4]arenes

A series of fluorescent calix[4]arene scaffolds bearing electron-rich carbazole moiety conjugated at the lower rim have been prepared. Studies of the fluorescence quenching in the presence of the N-methyl pyridinium guest revealed that the electronic properties of the distal phenolic ring play a major role in the host–guest complexation. In particular, placing an electron-donating piperidine fragment at that ring significantly increased the host–guest interactions, while introducing the same fragment into the proximal phenolic ring weakened the fluorescence response. These results suggest that the dominant interactions between the guest and calixarene cavity involve the oxygen-depleted fluorophore-bearing aromatic ring and not the more electron-rich unsubstituted phenolic fragments.

Fluorophore-Appendant 5,5'-Bicalixarene Scaffolds for Host-Guest Sensing of Nitric Oxide

Conjugated 5,5′-Bicalixarene scaffolds having fluorophores at the chain termini have been prepared and tested in the supramolecular detection of nitric oxide. Scaffolds bearing electron-rich fluorophores demonstrated a stronger turn-off response to the presence of NO than the fluorophore-free analogue in both organic and aqueous media, while no fluorescence quenching happened when the electron-deficient fluorophores were employed. Unprecedented ratiometric supramolecular sensing was observed when fluorophores of the opposite electronic demands were placed at the scaffold’s termini.

Azo group(s) in selected macrocyclic compounds

Azobenzene derivatives due to their photo- and electroactive properties are an important group of compounds finding applications in diverse fields. Due to the possibility of controlling the trans-cis isomerization, azo-bearing structures are ideal building blocks for development of e.g. nanomaterials, smart polymers, molecular containers, photoswitches, and sensors. Important role play also macrocyclic compounds well known for their interesting binding properties. In this article selected macrocyclic compounds bearing azo group(s) are comprehensively described. Here, the relationship between compounds' structure and their properties (as e.g. ability to guest complexation, supramolecular structure formation, switching and motion) is reviewed.

Selective recognition of the di/trimethylammonium motif by an artificial carboxycalixarene receptor

Chemical tools that recognise post-translational modifications have promising applications in biochemistry and in therapy. We report a simple carboxycalixarene that selectively binds molecules containing di/trimethylammonium moieties in isolation, in cell lysates and when incorporated in histone peptides. Our findings reveal the potential of using carboxycalixarene-based receptors to study epigenetic regulation.

Light-responsive molecular containers

This review highlights relevant studies of light-controlled molecular containers able to catch and release small molecules.

Solution vs. gas phase relative stability of the choline/acetylcholine cavitand complexes

How the information obtained from the gas phase experiments can reflect the processes in solution is a crucial question for analytical chemistry, and particularly the selective host-guest recognition mechanisms which are fundamental in biology. Here we combine ElectroSpray Ionization mass spectrometry (ESI-MS) and the Collision Induced Dissociation (CID) experiments to the density functional theory to investigate the interaction of acetylcholine and the choline cation with a triphosphonate cavitand. While the relative abundance of the cation complexes in the ESI mass spectrum reflects the preferential capture of the acetylcholine ion over the choline ion by the cavitand in the solution, the gas phase CID measurements indicate that after desolvation the choline cation is the most strongly bound to the host. The experimental results are interpreted by theory that underlines the role of the counterion in the stabilization of the complexes in solution and therefore in the selective recognition of substrates of biological interest.

Dimeric calixarenes: a new family of major-groove binders

A new class of potent DNA binding agents is presented. Dimeric calix[4]arenes with cationic groups at their upper rims and flexible alkyl bridges can be synthesized from triply acyl-protected calix[4]arene tetramines in relatively short synthetic sequences (3-5 steps). The compounds attach themselves to double-stranded nucleic acids in a noncovalent fashion, with micro- to nanomolar affinities. Guanidinium headgroups with their extended hydrogen-bonding "fingers" are more powerful than ammonium groups, and the benzylamine series is superior to the anilinium series (see below). The new ligands easily distinguish between RNA and various DNA types, and produce characteristic changes in UV/Vis, fluorescence, CD, as well as NMR spectra. Especially extended oligonucleotides of more than 100 base pairs are bound with affinities increasing from RNA (10 μM K(d))<AT-rich (1 μM)<GC-rich DNA double strands (100-10 nM). Ethidium bromide displacement studies confirm this order. CE(50) values are remarkably low (1-4 μM), and are more than 300 times lower than that of spermine, which is a typical backbone binder. Stoichiometries are rather high (one calixarene dimer per two BP), suggesting a potential aggregation of bound ligands inside the major groove. Most UV/Vis melting curves display an inverted shape, and start from drastically enhanced absorption intensities for the DNA complexes. DAPI displacement studies prove that up to one equivalent of calixarene dimer can be accommodated in the dye-loaded DNA. RNA complexation by calixarene dimers is accompanied by a drastic CD spectral transition from the typical A-form to a perfect B-signature, providing further experimental evidence for major-groove binding. The orientation of the ligands can be deduced from NMR titrations and is reproduced in Monte-Carlo simulations on 1:1 complexes in water.

Geometric effects in olefinic cation-π interactions with alkali metals: a computational study

Although cation-π interactions commonly involve aromatic or heteroaromatic rings as the source of π-electrons, isolated and nonconjugated olefins are equally effective donors of π-electron density. Previous comparisons of these π-electron sources have indicated that the net energy of the binding interactions is not a simple additive function of the number of π-bonds involved. For instance, the enthalpy of binding (ΔH°) of Li(+), Na(+), or K(+) cations to two ethylene molecules or to one benzene molecule is approximately the same, despite the 4:6 ratio of π-electrons involved. This present density functional theory study indicates that geometric factors can partially account for the proportionally greater interaction energies of olefins, but whether they are symmetrically placed around the cation or grouped on one hemisphere has little effect on the binding energy. Instead, flexible ligands that permit olefinic π-electrons to be oriented more favorably toward the metal than those in rigid aromatic rings can be correlated with greater bonding. For Li(+) complexes, this appears to be an appreciable factor, although it is less significant with Na(+) and K(+) complexes. For all three cations, stronger polarization interactions with olefins compared to arenes contribute to the strength of cation-π interactions involving olefinic π-bonds.

Molecular recognition of organic ammonium ions in solution using synthetic receptors

Ammonium ions are ubiquitous in chemistry and molecular biology. Considerable efforts have been undertaken to develop synthetic receptors for their selective molecular recognition. The type of host compounds for organic ammonium ion binding span a wide range from crown ethers to calixarenes to metal complexes. Typical intermolecular interactions are hydrogen bonds, electrostatic and cation-π interactions, hydrophobic interactions or reversible covalent bond formation. In this review we discuss the different classes of synthetic receptors for organic ammonium ion recognition and illustrate the scope and limitations of each class with selected examples from the recent literature. The molecular recognition of ammonium ions in amino acids is included and the enantioselective binding of chiral ammonium ions by synthetic receptors is also covered. In our conclusion we compare the strengths and weaknesses of the different types of ammonium ion receptors which may help to select the best approach for specific applications.

Calix[4]arene daisychains

Generic calix[4]arenes became readily accessible in the late 70s. With their potential eight anchoring points, their utility for the production of sophisticated, highly functionalised macrocyclic molecules was rapidly recognised. While most studies in calixarene chemistry have focused on monocalixarene derivatives, there is now an increasing interest in developing multicalixarene compounds, especially those made of several linearly-arranged calix[4]arene units, the first examples of which were reported in 1989. This critical review will present the most important synthetic routes to such molecules together with an analysis of the properties that such cavity combinations may induce. In particular it will be shown that the nature of the links between the calixarene units plays a determinant role in the product properties and that singly-linked calixarenes can be exploited in varied applications, including those as efficient receptors of large molecules, as electrochemical and luminescent sensors in ion detection, or as new materials allowing capsule formation suitable for the storage of small guests (82 references).

Control of self-aggregation of fullerenes by connection with calix[4]arene: solvent- and guest-effects to particle size

A new molecular design of fullerene derivatives exhibiting trigger-responsive self-aggregation in organic solvents has been established. Calix[4]arene was covalently connected with fullerene in order to apply host-guest interaction to the aggregation control. The self-assembly behaviour was studied in organic solvents by UV-vis absorption spectroscopy, dynamic light scattering and transmission electron microscopy. Results show that the bisfullerene formed self-aggregations with a low polydispersity index due to the fullerenes' tendency to aggregate in polar organic solvents. Furthermore, the aggregate sizes can be changed readily by solvent composition and the addition of guest cations. Especially, disaggregation of the bisfullerene was induced by addition of LiClO4 or NaClO4.

Methyl Ether Derivatives of p-tert-Butyl[3.1.3.1]homooxacalixarene. Formation, Structure, and Complexes with Quaternary Ammonium Ions

[structure: see text] The whole set (five compounds) of partially O-methylated products of p-tert-butyl[3.1.3.1]homooxacalixarene, currently named p-tert-butyltetrahomodioxacalix[4]arene, have been prepared. Their structure has been investigated in solution through NMR techniques and in the solid state by single-crystal X-ray diffraction. A systematic investigation, extended to the parent tetraphenol and to the tetramethyl ether derivative, has been carried out on the complexation of tetramethylammonium, acetylcholine, N-methylpyridinium, and tetraethylammonium picrate in CDCl3. The observed trends in the binding and in the selectivity of the strictly related hosts could be analyzed on the basis of the varying importance of intramolecular hydrogen bonding and its effects on the conformation of the free and of the complexed ligands. On increasing the number of methyl ether functions, the cone conformation appears to be relatively less stable but deeper, so small organic cations can be more effectively encircled.

Towards the stereoselective synthesis of inherently chiral pseudorotaxanes

Herein is reported an investigation towards the stereoselective synthesis of inherently chiral pseudorotaxanes. Chiral ammonium threads were readily prepared in five steps from racemic or enantiopure (M or P) salts of di-n-propyl-1,13-dimethoxyquinacridinium cation. Their self-assembly with DB24C8 or disymmetrically oriented DB24C8F6 rings formed pseudorotaxanes as shown by 1H and 19F NMR spectroscopy as well as MS measurements. A determination of the association constants (Ka) was afforded. The crucial role played by the ammonium counter-ion in the threading process was further demonstrated as salts of TRISPHAT (tris(tetrachlorobenzenediolato)phosphate(V)) anion were quite more effective than their PF6- analogues (x 7.3). A general lack of diastereoselectivity (de <or= 8%) was unfortunately observed.

Metal directed assembly of ditopic containers and their complexes with alkylammonium salts

A new self-folding cavitand has been assembled through metal coordination to give a thermodynamically stable ditopic receptor of nanosize dimensions which has been used in the reversible binding of di-alkylammonium and n-alkylammonium salts.

Interaction between quaternary ammonium ions and dipeptides: positive anion allosteric effect

The binding properties of dipeptides possessing aromatic residues towards quaternary ammonium ions have been investigated by 1H-NMR spectroscopy. The intermolecular hydrogen bonding between exchangeable protons (OH and NH) of aromatic residues of dipeptides and the counter anion of ammonium ion is the primary force. After the formation of the intermolecular hydrogen bonding, two aromatic residues of dipeptides can provide pi-base cavity to interact with the quaternary ammonium moiety.

Design and Self-Assembly of Ditopic and Tetratopic Cavitand Complexes

The self-assembly of open ditopic and tetratopic cavitand complexes has been investigated by using monofunctionalized cavitand ligands and suitable metal precursors. In the case of ditopic complexes, self-assembly protocols, leading exclusively to the formation of both thermodynamically stable cis-Pt square-planar complexes 8 and 9 and the kinetically inert fac-Re octahedral complex 14, have been elaborated. The use of cis-[Pt(CH3)CN)2Cl2] as metal precursor led to the formation of monotopic trans-10 and ditopic trans-11 cavitand complexes, while cis-[Pt(dmso)2Cl2] afforded both cis-13 and trans-11 isomers. The self-assembly of tetratopic cavitand complexes has been achieved by using mononuclear [Pd(CH3CN)4(BF4)2] and dinuclear [M2(tppb)(OTf)4] (19: M = Pt; 20: M = Pd) metal precursors. Only the tetratopic dinuclear complexes 21 and 22 were stable. The ligand configuration with two phosphorus and two cavitand ligands at the metal centers is the most appropriate to build tetratopic cavitand complexes with sufficient kinetic stability.

Binding of acetylcholine and tetramethylammonium to a cyclophane receptor: anion's contribution to the cation-pi interaction

The interaction of the lipophilic cyclophane 1 with several acetylcholine (ACh) and tetramethylammonium (TMA) salts has been investigated in deuteriochloroform to ascertain the influence of the counterion on the cation-pi interaction. Reliable association constants have been measured for 17 salts of commonly used anions; corresponding binding free energies -DeltaG degrees ranged from over 8 kJ mol(-1) down to the limit of detection. The dramatic dependence of the binding energy on the anion showed that the latter takes part in the process with a passive and adverse contribution, which inhibits cation binding even to complete suppression in unfavorable cases. Thermodynamic parameters for the association of 1 with TMA picrate demonstrate that binding is enthalpic in origin, showing a substantial enthalpy gain (DeltaH degrees = -16.7 kJ mol(-1)) and an adverse entropic contribution (DeltaS degrees = -27.9 J mol(-1) K(-1)). A correlation has been found between the "goodness" of anions as binding partners and the solubility of their salts. Conversion of the anion into a more charge-dispersed species, for example, conversion of chloride into dialkyltrichlorostannate, improves cation binding substantially, indicating that charge dispersion is a main factor determining the influence of the anion on the cation-pi interaction. DFT computational studies show that the variation of the binding free energy of TMA with the counterion is closely accounted for by the electrostatic potential (EP) of the ion pair: guest binding appears to respond to the cation's charge density exposed to the receptor, which is determined by the anion's charge density through a polarization mechanism. A value of -DeltaG degrees = 38.6 kJ mol(-1) has been extrapolated for the free energy of binding of TMA to 1 in chloroform but in the absence of a counterion. The transmission of electrostatic effects from the ion pair to the cation-pi interaction demonstrates that host-guest association is governed by Coulombic attraction, as long as factors (steric, entropic, solvation, etc.) other than pure electrostatics are not prevalent.

[Interaction between acyclic phenol--formaldehyde oligomers and quaternary ammonium ions]

The interaction between acyclic phenol-formaldehyde oligomers (1) and quaternary ammonium ions (5) was investigated by 1H-NMR spectroscopy. From the induced chemical shift change of 5 in the presence of 1, the cation-pi interaction between the N(+)-(CH3)3 moiety of 5 and the pi-base of 1 occurs during the formation of the complex. Another important observation is that the OH proton signals of 1 are considerably broadened upon addition of 5, indicating that hydrogen bonding occurs between exchangeable protons of 1 and iodide anion of 5. These interactions play an important role in the binding of 5.