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Guo Y, Cupp‐Sutton KA, Zhao Z, Anjum S, Wu S. Multidimensional Separations in Top-Down Proteomics. ANALYTICAL SCIENCE ADVANCES 2023; 4:181-203. [PMID: 38188188 PMCID: PMC10769458 DOI: 10.1002/ansa.202300016] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/13/2023] [Revised: 04/21/2023] [Accepted: 05/01/2023] [Indexed: 01/09/2024]
Abstract
Top-down proteomics (TDP) identifies, quantifies, and characterizes proteins at the intact proteoform level in complex biological samples to understand proteoform function and cellular mechanisms. However, analyzing complex biological samples using TDP is still challenging due to high sample complexity and wide dynamic range. High-resolution separation methods are often applied prior to mass spectrometry (MS) analysis to decrease sample complexity and increase proteomics throughput. These separation methods, however, may not be efficient enough to characterize low abundance intact proteins in complex samples. As such, multidimensional separation techniques (combination of two or more separation methods with high orthogonality) have been developed and applied that demonstrate improved separation resolution and more comprehensive identification in TDP. A suite of multidimensional separation methods that couple various types of liquid chromatography (LC), capillary electrophoresis (CE), and/or gel electrophoresis-based separation approaches have been developed and applied in TDP to analyze complex biological samples. Here, we reviewed multidimensional separation strategies employed for TDP, summarized current applications, and discussed the gaps that may be addressed in the future.
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Affiliation(s)
- Yanting Guo
- Department of Chemistry and BiochemistryUniversity of OklahomaOklahomaNormanUSA
| | | | - Zhitao Zhao
- Department of Chemistry and BiochemistryUniversity of OklahomaOklahomaNormanUSA
| | - Samin Anjum
- Department of Chemistry and BiochemistryUniversity of OklahomaOklahomaNormanUSA
| | - Si Wu
- Department of Chemistry and BiochemistryUniversity of OklahomaOklahomaNormanUSA
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2
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Lee D, Kazakevich YV. Indexation of mixed mode adsorbents using low temperature nitrogen adsorption and Silica-C18 surface energy scale. J LIQ CHROMATOGR R T 2022. [DOI: 10.1080/10826076.2022.2110117] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/15/2022]
Affiliation(s)
- Dinah Lee
- Department of Chemistry and Biochemistry, Seton Hall University, South Orange, New Jersey, USA
| | - Yuri V. Kazakevich
- Department of Chemistry and Biochemistry, Seton Hall University, South Orange, New Jersey, USA
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3
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Erckes V, Steuer C. A story of peptides, lipophilicity and chromatography - back and forth in time. RSC Med Chem 2022; 13:676-687. [PMID: 35800203 PMCID: PMC9215158 DOI: 10.1039/d2md00027j] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2022] [Accepted: 03/18/2022] [Indexed: 11/25/2022] Open
Abstract
Peptides, as part of the beyond the rule of 5 (bRo5) chemical space, represent a unique class of pharmaceutical compounds. Because of their exceptional position in the chemical space between traditional small molecules (molecular weight (MW) < 500 Da) and large therapeutic proteins (MW > 5000 Da), peptides became promising candidates for targeting challenging binding sites, including even targets traditionally considered as undruggable - e.g. intracellular protein-protein interactions. However, basic knowledge about physicochemical properties that are important for a drug to be membrane permeable is missing but would enhance the drug discovery process of bRo5 molecules. Consequently, there is a demand for quick and simple lipophilicity determination methods for peptides. In comparison to the traditional lipophilicity determination methods via shake flask and in silico prediction, chromatography-based methods could have multiple benefits such as the requirement of low analyte amount, insensitivity to impurities and high throughput. Herein we elucidate the role of peptide lipophilicity and different lipophilicity values. Further, we summarize peptide analysis via common chromatographic techniques, in specific reversed phase liquid chromatography, hydrophilic interaction liquid chromatography and supercritical fluid chromatography and their role in drug discovery and development process.
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Affiliation(s)
- Vanessa Erckes
- Pharmaceutical Analytics, Institute of Pharmaceutical Sciences, Federal Institute of Technology Zurich 8093 Zurich Switzerland
| | - Christian Steuer
- Pharmaceutical Analytics, Institute of Pharmaceutical Sciences, Federal Institute of Technology Zurich 8093 Zurich Switzerland
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4
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Berlinck RGS, Crnkovic CM, Gubiani JR, Bernardi DI, Ióca LP, Quintana-Bulla JI. The isolation of water-soluble natural products - challenges, strategies and perspectives. Nat Prod Rep 2021; 39:596-669. [PMID: 34647117 DOI: 10.1039/d1np00037c] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Abstract
Covering period: up to 2019Water-soluble natural products constitute a relevant group of secondary metabolites notably known for presenting potent biological activities. Examples are aminoglycosides, β-lactam antibiotics, saponins of both terrestrial and marine origin, and marine toxins. Although extensively investigated in the past, particularly during the golden age of antibiotics, hydrophilic fractions have been less scrutinized during the last few decades. This review addresses the possible reasons on why water-soluble metabolites are now under investigated and describes approaches and strategies for the isolation of these natural compounds. It presents examples of several classes of hydrosoluble natural products and how they have been isolated. Novel stationary phases and chromatography techniques are also reviewed, providing a perspective towards a renaissance in the investigation of water-soluble natural products.
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Affiliation(s)
- Roberto G S Berlinck
- Instituto de Química de São Carlos, Universidade de São Paulo, CP 780, CEP 13560-970, São Carlos, SP, Brazil.
| | - Camila M Crnkovic
- Faculdade de Ciências Farmacêuticas, Universidade de São Paulo, CEP 05508-000, São Paulo, SP, Brazil
| | - Juliana R Gubiani
- Instituto de Química de São Carlos, Universidade de São Paulo, CP 780, CEP 13560-970, São Carlos, SP, Brazil.
| | - Darlon I Bernardi
- Instituto de Química de São Carlos, Universidade de São Paulo, CP 780, CEP 13560-970, São Carlos, SP, Brazil.
| | - Laura P Ióca
- Instituto de Química de São Carlos, Universidade de São Paulo, CP 780, CEP 13560-970, São Carlos, SP, Brazil.
| | - Jairo I Quintana-Bulla
- Instituto de Química de São Carlos, Universidade de São Paulo, CP 780, CEP 13560-970, São Carlos, SP, Brazil.
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Lui KW, Ngai SM. PrSM-Level Side-by-Side Comparison of Online LC-MS Methods with Intact Histone H3 and H4 Proteoforms. J Proteome Res 2021; 20:4331-4345. [PMID: 34327993 DOI: 10.1021/acs.jproteome.1c00308] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The heterogeneity of histone H3 proteoforms makes histone H3 top-down analysis challenging. To enhance the detection coverage of the proteoforms, performing liquid chromatography (LC) front-end to mass spectrometry (MS) detection is recommended. Here, using optimized electron-transfer/high-energy collision dissociation (EThcD) parameters, we have conducted a proteoform-spectrum match (PrSM)-level side-by-side comparison of reversed-phase LC-MS (RPLC-MS), "dual-gradient" weak cation-exchange/hydrophilic interaction LC-MS (dual-gradient WCX/HILIC-MS), and "organic-rich" WCX/HILIC-MS on the top-down analyses of H3.1, H3.2, and H4 proteins extracted from a HeLa cell culture. While both dual-gradient WCX/HILIC and organic-rich WCX/HILIC could resolve intact H3 and H4 proteoforms by the number of acetylations, the organic-rich method could enhance the separations of different trimethyl/acetyl near-isobaric H3 proteoforms. In comparison with RPLC-MS, both of the WCX/HILIC-MS methods enhanced the qualities of the H3 PrSMs and remarkably improved the range, reproducibility, and confidence in the identifications of H3 proteoforms.
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Affiliation(s)
- Kin-Wing Lui
- School of Life Sciences, The Chinese University of Hong Kong, Sha Tin, Hong Kong 999077, P. R. China
| | - Sai-Ming Ngai
- School of Life Sciences, The Chinese University of Hong Kong, Sha Tin, Hong Kong 999077, P. R. China.,State Key Laboratory of Agrobiotechnology and School of Life Sciences, The Chinese University of Hong Kong, Shatin, Hong Kong 999077, P. R. China
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pH-dependent selective separation of acidic and basic proteins using quaternary ammoniation functionalized cysteine-zwitterionic stationary phase with RPLC/IEC mixed-mode chromatography. Talanta 2021; 225:122084. [PMID: 33592796 DOI: 10.1016/j.talanta.2021.122084] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/23/2020] [Revised: 12/29/2020] [Accepted: 01/03/2021] [Indexed: 11/22/2022]
Abstract
In this paper, a cysteine-functionalized zwitterionic stationary phase (Cys-silica) was prepared based on the "thiol-ene" click chemistry between cysteine and vinyl-functionalized silica, and was further modified with bromoethane, 1-bromooctane and 1-bromooctadecane, respectively, to obtain a series of quaternary ammoniation-functionalized stationary phases (Cys-silica-Cn, n = 2, 8 and 18). These zwitterionic stationary phases were regarded as reversed-phase/ion-exchange (RP/IEC) mixed-mode chromatography (MMC) stationary phases for protein separation. The retention behaviors of proteins on these zwitterionic stationary phases were carefully investigated. The results indicated that the retentions of acidic and basic proteins on these zwitterinonic stationary phases were significantly influenced by the acetonitrile and salt concentrations, pH of mobile phase as well as the hydrophobicity of the ligand. The separation selectivity of proteins on these zwitterionic stationary phases strongly depended on the pH value of mobile phase. The baseline separation of 6 kinds of basic proteins can be achieved at pH 8.0 using Cys-silica-C2 or Cys-silica-C8 column, and 5 kinds of acidic proteins can also be separated completely at pH 4.0 with Cys-silica-C2 column. Moreover, owing to the quaternary ammoniation-functionalization on Cys-silica by using appropriately hydrophobic bromoalkanes, the selectivity and separation efficiency of proteins can be enhanced greatly. As a result, the acidic and basic proteins can be separated completely step by step from the complex sample by adjusting pH of mobile phase using a single Cys-silica-C2 column, which illustrates that the cysteine-functionalized zwitterionic stationary phase has a great potential for protein separation.
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7
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Ali F, Cheong WJ, Rafique A, AlOthman ZA, Sadia M, Muhammad M. Particle packed mixed-mode chromatographic stationary phase for the separation of peptide in liquid chromatography. J Sep Sci 2021; 44:1430-1439. [PMID: 33492780 DOI: 10.1002/jssc.202100001] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/01/2021] [Revised: 01/20/2021] [Accepted: 01/21/2021] [Indexed: 11/09/2022]
Abstract
A particle-based stationary phase has been prepared for the separation of five synthetic peptides and a mixture containing tryptic digest of cytochrome C in liquid chromatography. Particles originating from silica monolith were differentially sedimented to obtain 1-2 μm particles. A stationary phase was achieved by the coating of poly(styrene-methacrylic acid-N-phenylacrylamide) copolymer onto the particles via reversible addition-fragmentation chain transfer polymerization reaction. Stainless steel column (30 cm long and 1 mm internal diameter) was packed with stationary phase. Very high separation efficiency (ca. 351 000 plates/m) was achieved for five commercial peptides with a percent relative standard deviation of less than 1%. Protocol for the synthesis and modification of silica monolith particles has been well optimized with a good reproducibility both in particle and pore size. The column resolved about 21 peptide components from a mixture containing tryptic digest of cytochrome C, under the elution conditions of acetonitrile/15 mM ammonium format (65/35 v/v%) with a flow rate of 28 μL/min.
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Affiliation(s)
- Faiz Ali
- Department of Chemistry, University of Malakand, Khyber Pakhtunkhwa, Pakistan.,Department of Chemistry, Inha University, Incheon, South Korea
| | - Won Jo Cheong
- Department of Chemistry, Inha University, Incheon, South Korea
| | - Aamra Rafique
- Department of Chemistry, Faculty of Basic and Applied Sciences, University of The Poonch, Rawalakot, Pakistan
| | - Zeid A AlOthman
- Advanced Materials Research Chair, Chemistry Department, College of Science, King Saud University, Riyadh, Saudi Arabia
| | - Maria Sadia
- Department of Chemistry, University of Malakand, Khyber Pakhtunkhwa, Pakistan
| | - Mian Muhammad
- Department of Chemistry, University of Malakand, Khyber Pakhtunkhwa, Pakistan
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Wolrab D, Frühauf P, Kolderová N, Kohout M. Strong cation- and zwitterion-exchange-type mixed-mode stationary phases for separation of pharmaceuticals and biogenic amines in different chromatographic modes. J Chromatogr A 2020; 1635:461751. [PMID: 33285414 DOI: 10.1016/j.chroma.2020.461751] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2020] [Revised: 11/21/2020] [Accepted: 11/22/2020] [Indexed: 11/18/2022]
Abstract
A set of new mixed-mode ion-exchange stationary phases is presented. The backbone of organic selectors is formed by a linear hydrocarbon chain, which is divided into two parts of various lengths by a heteroatom (oxygen or nitrogen). In all studied cases, there is a sulfonic acid moiety as the terminal group. Therefore, selectors bearing oxygen gave rise to strong cation ion-exchange stationary phases, while selectors with an embedded nitrogen atom (inducing a weak anion exchange capacity) were used to create zwitterion ion-exchange stationary phases. The new mixed-mode stationary phases were chromatographically evaluated in high performance liquid chromatography (HPLC) and supercritical fluid chromatography (SFC) using isocratic elution conditions to disclose their chromatographic potential. In HPLC mode, aqueous-rich reversed phase chromatography, acetonitrile-rich hydrophilic interaction liquid chromatography and methanolic ion-exchange chromatography mobile phases were employed. In these chromatographic modes, retention factors and selectivity values for a test set of basic and zwitterionic analytes were determined. The results were compared and principal component analysis for each chromatographic mode was performed. For all chromatographic modes, the component 1 in the principal component analysis reflected the elution order. The application of different mobile phases on a particular column resulted not only in variation in retention, but also in modified selectivity, and different elution order of the analytes. The orthogonality of the elution order depending on the employed mobile phase conditions was especially reflected for structurally closely related analytes, such as melatonin and N-acetyl-serotonin, tryptamine and serotonin or noradrenalin and octopamine. However, ion-exchange interactions remain the main driving force for retention. From all investigated stationary phases, the SCX 2 (C5-linker and C4-spacer) seems to be the best choice for the separation of basic analytes using different mobile phase conditions.
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Affiliation(s)
- Denise Wolrab
- Department of Analytical Chemistry, University of Pardubice, Studentská 95, 532 10 Pardubice 2, Czech Republic; Department of Analytical Chemistry, University of Vienna, Währinger Strasse 38, A-1090 Vienna, Austria.
| | - Peter Frühauf
- Department of Analytical Chemistry, University of Vienna, Währinger Strasse 38, A-1090 Vienna, Austria
| | - Natalie Kolderová
- Department of Organic Chemistry, University of Chemistry and Technology Prague, Technická 5, CZ-166 28, Prague 6, Czech Republic; Department of Chemistry of Natural Compounds, University of Chemistry and Technology Prague, Technická 5, CZ-166 28, Prague 6, Czech Republic
| | - Michal Kohout
- Department of Organic Chemistry, University of Chemistry and Technology Prague, Technická 5, CZ-166 28, Prague 6, Czech Republic
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9
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Ferri M, Bäurer S, Carotti A, Wolter M, Alshaar B, Theiner J, Ikegami T, West C, Lämmerhofer M. Fragment-based Design of Zwitterionic, Strong Cation- and Weak Anion-Exchange Type Mixed-mode Liquid Chromatography Ligands and their Chromatographic Exploration. J Chromatogr A 2020; 1621:461075. [DOI: 10.1016/j.chroma.2020.461075] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2019] [Revised: 03/20/2020] [Accepted: 03/23/2020] [Indexed: 12/20/2022]
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10
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Sun G, Ali A, Kim YS, Kim JS, An HJ, Cheong WJ. An optimized mixed‐mode stationary phase based on silica monolith particles for the separation of peptides and proteins in high‐performance liquid chromatography. J Sep Sci 2019; 42:3621-3630. [DOI: 10.1002/jssc.201900914] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2019] [Revised: 10/02/2019] [Accepted: 10/02/2019] [Indexed: 12/22/2022]
Affiliation(s)
- Genlin Sun
- Department of ChemistryInha University Incheon South Korea
| | - Ashraf Ali
- Department of ChemistryInha University Incheon South Korea
| | - Yune Sung Kim
- Department of ChemistryInha University Incheon South Korea
| | - Jeong Soo Kim
- Department of ChemistryInha University Incheon South Korea
| | - Hyun Joo An
- Graduate School of Analytical Science and TechnologyChungnam National University Daejeon South Korea
| | - Won Jo Cheong
- Department of ChemistryInha University Incheon South Korea
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Kozlov O, Kadlecová Z, Gilar M, Gondová T, Kalíková K, Tesařová E. Systematic evaluation of selected supercritical fluid chromatography diol‐ and diethylamine‐based columns for application in hydrophilic interaction liquid chromatography. SEPARATION SCIENCE PLUS 2019. [DOI: 10.1002/sscp.201900023] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Affiliation(s)
- Oleksandr Kozlov
- Department of Analytical ChemistryFaculty of ScienceP. J. Šafárik University Košice Slovak Republic
| | - Zuzana Kadlecová
- Department of Physical and Macromolecular ChemistryFaculty of ScienceCharles University Prague Czech Republic
| | | | - Taťána Gondová
- Department of Analytical ChemistryFaculty of ScienceP. J. Šafárik University Košice Slovak Republic
| | - Květa Kalíková
- Department of Physical and Macromolecular ChemistryFaculty of ScienceCharles University Prague Czech Republic
| | - Eva Tesařová
- Department of Physical and Macromolecular ChemistryFaculty of ScienceCharles University Prague Czech Republic
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12
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Yang F, Wang F, Zhang L. Performance and preparation of cation-exchange chromatographic stationary phases without negatively charged groups for protein separation. SEPARATION SCIENCE PLUS 2018. [DOI: 10.1002/sscp.201700020] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Fan Yang
- College of Resources and Environment; Ningxia University; Yinchuan China
| | - Fei Wang
- Institute of Industrial Hygiene of Ordnance Industry; Xi' an China
| | - Lian Zhang
- Yinchuan Experimental Middle School; Yinchuan China
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13
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Gong L. Analysis of oligonucleotides by ion-pairing hydrophilic interaction liquid chromatography/electrospray ionization mass spectrometry. RAPID COMMUNICATIONS IN MASS SPECTROMETRY : RCM 2017; 31:2125-2134. [PMID: 28972295 DOI: 10.1002/rcm.8004] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/20/2017] [Revised: 09/18/2017] [Accepted: 09/25/2017] [Indexed: 06/07/2023]
Abstract
RATIONALE Hydrophilic interaction liquid chromatography/electrospray ionization mass spectrometry (HILIC-LC/ESI-MS) has been proved to be useful for the quality control of oligonucleotides. However, the lack of separation for some oligonucleotides using HILIC-LC/MS has proved problematic. This study aimed to improve the resolving ability of HILIC-LC/MS. METHODS The study was performed on a Waters UPLC® system coupled to a Waters LCT premier XE ESI-TOF mass spectrometer using a Zorbax® RRHD HILIC column (2.1 mm × 100 mm, 1.8 μm). Buffer systems contained triethylammonium acetate (TEAA) and acetonitrile. The effects of the concentration of TEAA and the type of organic modifiers on the separation of oligonucleotides were investigated. RESULTS The results showed that the optimum concentration of TEAA is 10 mM and acetonitrile is a better organic solvent than methanol. The addition of TEAA in the HILIC mobile phase improved the separation of N from N + A significantly compared to the HILIC method buffered with ammonium acetate. The IP-HILIC chromatography has demonstrated that the separation of oligonucleotides is sequence dependent. In addition, the IP-HILIC method produces a much simpler mass spectrum of an oligonucleotide with very efficient desalting. CONCLUSIONS The HILIC-LC/MS method with the addition of TEAA at a MS-compatible concentration has improved the separation of oligonucleotides. The IP-HILIC-LC/MS method also produces very simple mass spectra with high desalting efficiency.
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Affiliation(s)
- Lingzhi Gong
- Chemistry Research Laboratory, University of Oxford, 12 Mansfield Road, Oxford, OX1 3TA, UK
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14
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Liu J, Li J, Zheng J, Wang C. Quantitative analysis of acid-catalyzed levulinic acid product mixture from cellulose by mixed-mode liquid chromatography. Carbohydr Polym 2017; 173:150-156. [PMID: 28732853 DOI: 10.1016/j.carbpol.2017.05.095] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2017] [Revised: 05/24/2017] [Accepted: 05/30/2017] [Indexed: 10/19/2022]
Abstract
A mixed-mode weak anion-exchange/reversed-phase liquid chromatography (LC) column was successfully applied for the analysis of levulinic acid (4-oxopentanoic acid, LA) product mixture derived from cellulose. Due to the existence of ionic and neutral byproducts, the analysis of the product mixture usually requires ion chromatography, LC and gas chromatography simultaneously. The new method enables accomplishment of the analysis in one LC run within 6min. LC mobile phase of 10mM phosphate buffer containing 5% acetonitrile with pH=5.5 was used. The linear regression coefficients for the UV signal of standard compounds with the corresponding mass concentrations were greater than 0.999. The method recoveries were between 98.57-103.48%. The limits of quantification were 5, 10,1000, 1500 and 3000ng/mL for 5-hydroxymethylfurfural, furfural, acetic acid, formic acid and LA respectively. The mixed-mode column exhibits comprehensive separation mechanism of both reversed-phase and ion-exchange interactions. The mobile phase with different pH, organic modifier solvent and buffer concentration provided flexible LC method for the sample with different complexity.
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Affiliation(s)
- Junyan Liu
- Sinopec Shanghai Research Institute of Petrochemical Technology, 1658 Pudong Beilu, Shanghai 201208, China.
| | - Jiwen Li
- Sinopec Shanghai Research Institute of Petrochemical Technology, 1658 Pudong Beilu, Shanghai 201208, China
| | - Junlin Zheng
- Sinopec Shanghai Research Institute of Petrochemical Technology, 1658 Pudong Beilu, Shanghai 201208, China
| | - Chuan Wang
- Sinopec Shanghai Research Institute of Petrochemical Technology, 1658 Pudong Beilu, Shanghai 201208, China
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15
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Abbood A, Smadja C, Taverna M, Herrenknecht C. Hydrophilic interaction liquid chromatography for dalargin separation from its structural analogues and side products. J Chromatogr A 2017; 1498:155-162. [DOI: 10.1016/j.chroma.2017.01.085] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2016] [Revised: 01/23/2017] [Accepted: 01/29/2017] [Indexed: 12/21/2022]
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16
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Preparation and characterization of hydrophilic hybrid monoliths via thiol-ene click polymerization and their applications in chromatographic analysis and glycopeptides enrichment. J Chromatogr A 2017; 1498:37-45. [DOI: 10.1016/j.chroma.2016.12.031] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2016] [Revised: 12/12/2016] [Accepted: 12/13/2016] [Indexed: 12/11/2022]
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17
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Bo C, Wang X, Wang C, Wei Y. Preparation of hydrophilic interaction/ion-exchange mixed-mode chromatographic stationary phase with adjustable selectivity by controlling different ratios of the co-monomers. J Chromatogr A 2017; 1487:201-210. [DOI: 10.1016/j.chroma.2017.01.061] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2016] [Revised: 01/22/2017] [Accepted: 01/23/2017] [Indexed: 01/26/2023]
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18
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Improving Proteome Coverage by Reducing Sample Complexity via Chromatography. ADVANCES IN EXPERIMENTAL MEDICINE AND BIOLOGY 2016; 919:83-143. [DOI: 10.1007/978-3-319-41448-5_5] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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19
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Wang H, Zhang L, Ma T, Zhang L, Qiao X. Imidazolium‐embedded iodoacetamide‐functionalized silica‐based stationary phase for hydrophilic interaction/reversed‐phase mixed‐mode chromatography. J Sep Sci 2016; 39:3498-504. [DOI: 10.1002/jssc.201600448] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2016] [Revised: 07/12/2016] [Accepted: 07/12/2016] [Indexed: 11/06/2022]
Affiliation(s)
- Huizhen Wang
- Electrical and Information Engineering Department of Hebei Jiaotong Vocational & Technical College Shijiazhuang China
| | - Lu Zhang
- Key Laboratory of Medicinal Chemistry and Molecular Diagnosis, Ministry of Education, College of Pharmaceutical SciencesHebei University Baoding China
| | - Teng Ma
- Key Laboratory of Medicinal Chemistry and Molecular Diagnosis, Ministry of Education, College of Pharmaceutical SciencesHebei University Baoding China
| | - Liyuan Zhang
- Liaoning Provincial Key Laboratory for ProteomicsDalian Medical University Dalian China
| | - Xiaoqiang Qiao
- Key Laboratory of Medicinal Chemistry and Molecular Diagnosis, Ministry of Education, College of Pharmaceutical SciencesHebei University Baoding China
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Xu Q, Xu F, Liu L, Chen Y. Compositional Analysis of Asymmetric and Symmetric Dimethylated H3R2 Using Liquid Chromatography–Tandem Mass Spectrometry-Based Targeted Proteomics. Anal Chem 2016; 88:8441-9. [DOI: 10.1021/acs.analchem.6b00076] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
Affiliation(s)
- Qingqing Xu
- School of Pharmacy, Nanjing Medical University, 818
Tian Yuan East Road, Nanjing, 211166, China
| | - Feifei Xu
- School of Pharmacy, Nanjing Medical University, 818
Tian Yuan East Road, Nanjing, 211166, China
| | - Liang Liu
- School of Pharmacy, Nanjing Medical University, 818
Tian Yuan East Road, Nanjing, 211166, China
| | - Yun Chen
- School of Pharmacy, Nanjing Medical University, 818
Tian Yuan East Road, Nanjing, 211166, China
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21
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Mant CT, Hodges RS. Separation of Peptides on HALO 2‐Micron Particles. ACTA ACUST UNITED AC 2016; 85:11.6.1-11.6.16. [DOI: 10.1002/cpps.12] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Affiliation(s)
- Colin T. Mant
- Department of Biochemistry and Molecular Genetics, University of Colorado, School of Medicine Aurora Colorado
| | - Robert S. Hodges
- Department of Biochemistry and Molecular Genetics, University of Colorado, School of Medicine Aurora Colorado
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Önder Ö, Sidoli S, Carroll M, Garcia BA. Progress in epigenetic histone modification analysis by mass spectrometry for clinical investigations. Expert Rev Proteomics 2016; 12:499-517. [PMID: 26400466 DOI: 10.1586/14789450.2015.1084231] [Citation(s) in RCA: 40] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
Chromatin biology and epigenetics are scientific fields that are rapid expanding due to their fundamental role in understanding cell development, heritable characters and progression of diseases. Histone post-translational modifications (PTMs) are major regulators of the epigenetic machinery due to their ability to modulate gene expression, DNA repair and chromosome condensation. Large-scale strategies based on mass spectrometry have been impressively improved in the last decade, so that global changes of histone PTM abundances are quantifiable with nearly routine proteomics analyses and it is now possible to determine combinatorial patterns of modifications. Presented here is an overview of the most utilized and newly developed proteomics strategies for histone PTM characterization and a number of case studies where epigenetic mechanisms have been comprehensively characterized. Moreover, a number of current epigenetic therapies are illustrated, with an emphasis on cancer.
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Affiliation(s)
- Özlem Önder
- a 1 Division of Hematology and Oncology, Philadelphia, 19104, USA.,b 2 Epigenetics Program, Department of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, 19104, USA
| | - Simone Sidoli
- b 2 Epigenetics Program, Department of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, 19104, USA
| | - Martin Carroll
- a 1 Division of Hematology and Oncology, Philadelphia, 19104, USA
| | - Benjamin A Garcia
- b 2 Epigenetics Program, Department of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, 19104, USA
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Recent advances in materials for stationary phases of mixed-mode high-performance liquid chromatography. Trends Analyt Chem 2016. [DOI: 10.1016/j.trac.2016.04.001] [Citation(s) in RCA: 74] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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Silica-based polypeptide-monolithic stationary phase for hydrophilic chromatography and chiral separation. J Chromatogr A 2016; 1446:125-33. [PMID: 27083263 DOI: 10.1016/j.chroma.2016.04.014] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2015] [Revised: 03/16/2016] [Accepted: 04/04/2016] [Indexed: 11/22/2022]
Abstract
Glutathione (GSH)-, somatostatin acetate (ST)- and ovomucoid (OV)-functionalized silica-monolithic stationary phases were designed and synthesized for HILIC and chiral separation using capillary electrochromatography (CEC). GSH, ST and OV were covalently incorporated into the silica skeleton via the epoxy ring-opening reaction between their amino groups and the glycidyl moiety in γ-glycidoxypropyltrimethoxysilane (GPTMS) together with polycondensation and copolymerization of tetramethyloxysilane and GPTMS. Not only could the direction and electroosmotic flow magnitude on the prepared GSH-, ST- and OV-silica hybrid monolithic stationary phases be controlled by the pH of the mobile phase, but also a typical HILIC behavior was observed so that the nucleotides and HPLC peptide standard mixture could be baseline separated using an aqueous mobile phase without any acetonitrile during CEC. Moreover, the prepared monolithic columns had a chiral separation ability to separate dl-amino acids. The OV-silica hybrid monolithic column was most effective in chiral separation and could separate dl-glutamic acid (Glu) (the resolution R=1.07), dl-tyrosine (Tyr) (1.57) and dl-histidine (His) (1.06). Importantly, the chiral separation ability of the GSH-silica hybrid monolithic column could be remarkably enhanced when using gold nanoparticles (AuNPs) to fabricate an AuNP-mediated GSH-AuNP-GSH-silica hybrid monolithic column. The R of dl-Glu, dl-Tyr and dl-His reached 1.19, 1.60 and 2.03. This monolithic column was thus applied to separate drug enantiomers, and quantitative separation of all four R/S drug enantiomers were achieved with R ranging from 4.36 to 5.64. These peptide- and protein-silica monolithic stationary phases with typical HILIC separation behavior and chiral separation ability implied their promise for the analysis of not only the future metabolic studies, but also drug enantiomers recognition.
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Zimmermann A, Horak J, Sievers-Engler A, Sanwald C, Lindner W, Kramer M, Lämmerhofer M. Surface-crosslinked poly(3-mercaptopropyl)methylsiloxane-coatings on silica as new platform for low-bleed mass spectrometry-compatible functionalized stationary phases synthesized via thiol-ene click reaction. J Chromatogr A 2016; 1436:73-83. [DOI: 10.1016/j.chroma.2016.01.058] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2015] [Revised: 01/22/2016] [Accepted: 01/26/2016] [Indexed: 10/22/2022]
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26
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Preparation, characterization and application of a reversed phase liquid chromatography/hydrophilic interaction chromatography mixed-mode C18-DTT stationary phase. Talanta 2016; 146:442-51. [DOI: 10.1016/j.talanta.2015.09.009] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2015] [Revised: 09/02/2015] [Accepted: 09/06/2015] [Indexed: 11/24/2022]
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27
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Wang Q, Ye M, Xu L, Shi ZG. A reversed-phase/hydrophilic interaction mixed-mode C18-Diol stationary phase for multiple applications. Anal Chim Acta 2015; 888:182-90. [DOI: 10.1016/j.aca.2015.06.058] [Citation(s) in RCA: 38] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2015] [Revised: 06/24/2015] [Accepted: 06/26/2015] [Indexed: 01/25/2023]
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28
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Zimmermann A, Horak J, Sánchez-Muñoz OL, Lämmerhofer M. Surface charge fine tuning of reversed-phase/weak anion-exchange type mixed-mode stationary phases for milder elution conditions. J Chromatogr A 2015. [DOI: 10.1016/j.chroma.2015.07.036] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
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Zhao K, Yang F, Xia H, Wang F, Song Q, Bai Q. Preparation of a weak anion exchange/hydrophobic interaction dual-function mixed-mode chromatography stationary phase for protein separation using click chemistry. J Sep Sci 2015; 38:703-10. [DOI: 10.1002/jssc.201401020] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2014] [Revised: 12/08/2014] [Accepted: 12/08/2014] [Indexed: 01/19/2023]
Affiliation(s)
- Kailou Zhao
- Key Laboratory of Synthetic and Natural Functional Molecule Chemistry of Ministry of Education; Institute of Modern Separation Science; Northwest University; Xi'an China
- Department of Applied Chemistry; He Nan Vocational College of Chemical Technology; Zheng Zhou China
| | - Fan Yang
- Key Laboratory of Synthetic and Natural Functional Molecule Chemistry of Ministry of Education; Institute of Modern Separation Science; Northwest University; Xi'an China
| | - Hongjun Xia
- Key Laboratory of Synthetic and Natural Functional Molecule Chemistry of Ministry of Education; Institute of Modern Separation Science; Northwest University; Xi'an China
| | - Fei Wang
- Key Laboratory of Synthetic and Natural Functional Molecule Chemistry of Ministry of Education; Institute of Modern Separation Science; Northwest University; Xi'an China
| | - Qingguo Song
- Key Laboratory of Synthetic and Natural Functional Molecule Chemistry of Ministry of Education; Institute of Modern Separation Science; Northwest University; Xi'an China
| | - Quan Bai
- Key Laboratory of Synthetic and Natural Functional Molecule Chemistry of Ministry of Education; Institute of Modern Separation Science; Northwest University; Xi'an China
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31
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Periat A, Krull IS, Guillarme D. Applications of hydrophilic interaction chromatography to amino acids, peptides, and proteins. J Sep Sci 2015; 38:357-67. [PMID: 25413716 DOI: 10.1002/jssc.201400969] [Citation(s) in RCA: 57] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2014] [Revised: 11/10/2014] [Accepted: 11/12/2014] [Indexed: 12/25/2022]
Abstract
This review summarizes the recent advances in the analysis of amino acids, peptides, and proteins using hydrophilic interaction chromatography. Various reports demonstrate the successful analysis of amino acids under such conditions. However, a baseline resolution of the 20 natural amino acids has not yet been published and for this reason, there is often a need to use mass spectrometry for detection to further improve selectivity. Hydrophilic interaction chromatography is also recognized as a powerful technique for peptide analysis, and there are a lot of papers showing its applicability for proteomic applications (peptide mapping). It is expected that its use for peptide mapping will continue to grow in the future, particularly because this analytical strategy can be combined with reversed-phase liquid chromatography, in a two-dimensional setup, to reach very high resolving power. Finally, the interest in hydrophilic interaction chromatography for intact proteins analysis is less evident due to possible solubility issues and a lack of suitable hydrophilic interaction chromatography stationary phases. To date, it has been successfully employed only for the characterization of membrane proteins, histones, and the separation of glycosylated isoforms of an intact glycoprotein. From our point of view, the number of hydrophilic interaction chromatography columns compatible with intact proteins (higher upper temperature limit, large pore size, etc.) is still too limited.
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Affiliation(s)
- Aurélie Periat
- School of Pharmaceutical Sciences, University of Geneva, University of Lausanne, Geneva, Switzerland
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32
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Chen B, Xu J, Fu Q, Dong X, Guo Z, Jin Y, Liang X. Evaluation of separation properties of a modified strong cation exchange material named MEX and its application in 2D-MEX × C18 system to separate peptides from scorpion venom. Analyst 2015; 140:4676-86. [DOI: 10.1039/c5an00271k] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Peptides from scorpion venom represent one of the most promising sources for drug discovery in some specific disease.
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Affiliation(s)
- Bo Chen
- School of Pharmacy
- East China University of Science and Technology
- Shanghai 200237
- China
| | - Junyan Xu
- Dalian Institute of Chemical Physics
- Chinese Academy of Sciences
- Dalian 116023
- China
| | - Qing Fu
- School of Pharmacy
- East China University of Science and Technology
- Shanghai 200237
- China
| | - Xuefang Dong
- Dalian Institute of Chemical Physics
- Chinese Academy of Sciences
- Dalian 116023
- China
| | - Zhimou Guo
- Dalian Institute of Chemical Physics
- Chinese Academy of Sciences
- Dalian 116023
- China
| | - Yu Jin
- School of Pharmacy
- East China University of Science and Technology
- Shanghai 200237
- China
| | - Xinmiao Liang
- School of Pharmacy
- East China University of Science and Technology
- Shanghai 200237
- China
- Dalian Institute of Chemical Physics
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33
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Ding L, Guo Z, Xiao Y, Xue X, Zhang X, Liang X. Evaluation and comparison ofn-alkyl chain and polar ligand bonded stationary phases for protein separation in reversed-phase liquid chromatography. J Sep Sci 2014; 37:2467-73. [DOI: 10.1002/jssc.201400238] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2014] [Revised: 05/21/2014] [Accepted: 06/21/2014] [Indexed: 11/06/2022]
Affiliation(s)
- Ling Ding
- Key Laboratory of Separation Science for Analytical Chemistry; Dalian Institute of Chemical Physics, Chinese Academy of Sciences; Dalian China
| | - Zhimou Guo
- Key Laboratory of Separation Science for Analytical Chemistry; Dalian Institute of Chemical Physics, Chinese Academy of Sciences; Dalian China
| | - Yuansheng Xiao
- Key Laboratory of Separation Science for Analytical Chemistry; Dalian Institute of Chemical Physics, Chinese Academy of Sciences; Dalian China
| | - Xingya Xue
- Key Laboratory of Separation Science for Analytical Chemistry; Dalian Institute of Chemical Physics, Chinese Academy of Sciences; Dalian China
| | - Xiuli Zhang
- Key Laboratory of Separation Science for Analytical Chemistry; Dalian Institute of Chemical Physics, Chinese Academy of Sciences; Dalian China
| | - Xinmiao Liang
- Key Laboratory of Separation Science for Analytical Chemistry; Dalian Institute of Chemical Physics, Chinese Academy of Sciences; Dalian China
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34
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Heaton JC, Russell JJ, Underwood T, Boughtflower R, McCalley DV. Comparison of peak shape in hydrophilic interaction chromatography using acidic salt buffers and simple acid solutions. J Chromatogr A 2014; 1347:39-48. [PMID: 24813934 DOI: 10.1016/j.chroma.2014.04.026] [Citation(s) in RCA: 44] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2014] [Revised: 04/07/2014] [Accepted: 04/09/2014] [Indexed: 11/25/2022]
Abstract
The retention and peak shape of neutral, basic and acidic solutes was studied on hydrophilic interaction chromatography (HILIC) stationary phases that showed both strong and weak ionic retention characteristics, using aqueous-acetonitrile mobile phases containing either formic acid (FA), ammonium formate (AF) or phosphoric acid (PA). The effect of organic solvent concentration on the results was also studied. Peak shape was good for neutrals under most mobile phase conditions. However, peak shapes for ionised solutes, particularly for basic compounds, were considerably worse in FA than AF. Even neutral compounds showed deterioration in performance with FA when the mobile phase water concentration was reduced. The poor performance in FA cannot be entirely attributed to the negative impact of ionic retention on ionised silanols on the underlying silica base materials, as results using PA at lower pH (where their ionisation is suppressed) were inferior to those in AF. Besides the moderating influence of the salt cation on ionic retention, it is likely that salt buffers improve peak shape due to the increased ionic strength of the mobile phase and its impact on the formation of the water layer on the column surface.
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Affiliation(s)
- James C Heaton
- Centre for Research in Biosciences, University of the West of England, Frenchay, Bristol BS16 1QY, UK
| | - Joseph J Russell
- Centre for Research in Biosciences, University of the West of England, Frenchay, Bristol BS16 1QY, UK
| | - Tim Underwood
- Analytical Chemistry, GlaxoSmithKline, Gunnels Wood Road, Stevenage, UK
| | | | - David V McCalley
- Centre for Research in Biosciences, University of the West of England, Frenchay, Bristol BS16 1QY, UK.
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35
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Kawai T, Watanabe M, Uetani K, Fukushima Y, Sueyoshi K, Kubo T, Kitagawa F, Yano H, Otsuka K. Hydrophilic interaction electrokinetic chromatography using bio-based nanofillers. Electrophoresis 2014; 35:2229-36. [PMID: 24737590 DOI: 10.1002/elps.201300558] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2013] [Revised: 03/26/2014] [Accepted: 04/04/2014] [Indexed: 11/11/2022]
Abstract
Hydrophilic interaction (HI)-based separation like HILIC is effective for analyzing hydrophilic biological samples such as carbohydrates, peptides, and metabolites. To overcome the drawbacks of conventional HILIC such as large consumption of organic solvents and easy deterioration of the separation column, we developed HI electrokinetic chromatography (EKC) by employing bio-based nanomaterials as the hydrophilic pseudostationary phase. By mechanical/chemical treatments, cellulose, chitin, and chitosan were processed to 10-nm wide nanofibers/nanowhiskers (NFs/NWs), which are longer/shorter than 1000/200 nm, respectively. In HI-EKC of oligosaccharides using 0.001% uncharged cellulose NFs, strong interaction was observed for the large-size oligosaccharides with the retention factors (k) of up to 1.56, indicating a HILIC-mode interaction. In HI-EKC with 0.1% positively charged chitosan NFs, benzenedisulfonic acid, benzenesulfonic acid (BS), and p-hydroxy BS (HBS) had k values of 0.036, 0.018, and 0.018, respectively, suggesting that the ion-exchange interaction mainly occurred via sulfonate groups. Finally, HI-EKC was demonstrated using 0.05% chitin or chitosan NWs. In both cases using chitin and chitosan NWs, HBS showed much stronger interaction with k > 0.192 compared with BS with k < 0.070. It indicated structural difference between NFs and NWs affected the HI behavior in terms of both the ion-exchange and HILIC modes.
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Affiliation(s)
- Takayuki Kawai
- Health Research Institute, National Institute of Advanced Industrial Science and Technology, Midorigaoka, Ikeda, Osaka, Japan
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36
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Pina AS, Lowe CR, Roque ACA. Challenges and opportunities in the purification of recombinant tagged proteins. Biotechnol Adv 2014; 32:366-81. [PMID: 24334194 PMCID: PMC7125906 DOI: 10.1016/j.biotechadv.2013.12.001] [Citation(s) in RCA: 85] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2013] [Revised: 12/04/2013] [Accepted: 12/08/2013] [Indexed: 01/05/2023]
Abstract
The purification of recombinant proteins by affinity chromatography is one of the most efficient strategies due to the high recovery yields and purity achieved. However, this is dependent on the availability of specific affinity adsorbents for each particular target protein. The diversity of proteins to be purified augments the complexity and number of specific affinity adsorbents needed, and therefore generic platforms for the purification of recombinant proteins are appealing strategies. This justifies why genetically encoded affinity tags became so popular for recombinant protein purification, as these systems only require specific ligands for the capture of the fusion protein through a pre-defined affinity tag tail. There is a wide range of available affinity pairs "tag-ligand" combining biological or structural affinity ligands with the respective binding tags. This review gives a general overview of the well-established "tag-ligand" systems available for fusion protein purification and also explores current unconventional strategies under development.
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Affiliation(s)
- Ana Sofia Pina
- REQUIMTE, Departamento de Química, Faculdade de Ciências e Tecnologia, Universidade Nova de Lisboa, 2829-516 Caparica, Portugal; IBET-Instituto de Biologia Experimental Tecnológica, Oeiras, Portugal
| | - Christopher R Lowe
- Institute of Biotechnology, Department of Chemical Engineering and Biotechnology, University of Cambridge, Tennis Court Road, CB2 1QT Cambridge, UK
| | - Ana Cecília A Roque
- REQUIMTE, Departamento de Química, Faculdade de Ciências e Tecnologia, Universidade Nova de Lisboa, 2829-516 Caparica, Portugal.
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37
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Gao M, Qi D, Zhang P, Deng C, Zhang X. Development of multidimensional liquid chromatography and application in proteomic analysis. Expert Rev Proteomics 2014; 7:665-78. [DOI: 10.1586/epr.10.49] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
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38
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Two-dimensional high-performance thin-layer chromatography of tryptic bovine albumin digest using normal- and reverse-phase systems with silanized silica stationary phase. J Chromatogr A 2013; 1312:152-4. [DOI: 10.1016/j.chroma.2013.08.082] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2013] [Revised: 08/20/2013] [Accepted: 08/21/2013] [Indexed: 01/11/2023]
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39
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Song C, Wang J, Zhao K, Bai Q. Preparation and characterization of a novel dual-retention mechanism mixed-mode stationary phase with PEG 400 and succinic anhydride as ligand for protein separation in WCX and HIC modes. Biomed Chromatogr 2013; 27:1741-53. [DOI: 10.1002/bmc.2988] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2013] [Revised: 05/27/2013] [Accepted: 05/28/2013] [Indexed: 12/21/2022]
Affiliation(s)
- Chao Song
- Key Laboratory of Synthetic and Natural Functional Molecule Chemistry of Ministry of Education, Institute of Modern Separation Science, Key Lab of Modern Separation Science in Shaanxi Province; Northwest University; Xi'an 710069 China
| | - Jianshan Wang
- Key Laboratory of Synthetic and Natural Functional Molecule Chemistry of Ministry of Education, Institute of Modern Separation Science, Key Lab of Modern Separation Science in Shaanxi Province; Northwest University; Xi'an 710069 China
| | - Kailou Zhao
- Key Laboratory of Synthetic and Natural Functional Molecule Chemistry of Ministry of Education, Institute of Modern Separation Science, Key Lab of Modern Separation Science in Shaanxi Province; Northwest University; Xi'an 710069 China
| | - Quan Bai
- Key Laboratory of Synthetic and Natural Functional Molecule Chemistry of Ministry of Education, Institute of Modern Separation Science, Key Lab of Modern Separation Science in Shaanxi Province; Northwest University; Xi'an 710069 China
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40
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Mant CT, Jiang Z, Boyes BE, Hodges RS. An improved approach to hydrophilic interaction chromatography of peptides: salt gradients in the presence of high isocratic acetonitrile concentrations. J Chromatogr A 2013; 1277:15-25. [PMID: 23332786 PMCID: PMC3639484 DOI: 10.1016/j.chroma.2012.12.044] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2012] [Revised: 12/17/2012] [Accepted: 12/20/2012] [Indexed: 12/31/2022]
Abstract
Hydrophilic interaction chromatography (HILIC) for separations of peptides has been employed infrequently, particularly considering that this technique was introduced over 20 years ago. The present manuscript describes a radical departure from the traditional HILIC elution approach, where separations are achieved via increasing salt (sodium perchlorate) gradients in the presence of high isocratic concentrations (>80%) of acetonitrile, denoted HILIC/SALT. This initial study compared to reversed-phase chromatography (RPC), HILIC and HILIC/SALT for the separation of mixtures of synthetic peptide standards varying in structure (amphipathic α-helix, random coil), length (10-26 residues), number of positively charged residues (+1 to +11) and hydrophilicity/hydrophobicity. Results showed a marked superiority of the HILIC/SALT approach compared to traditional HILIC and excellent complementarity to RPC for peptide separations. We believe these initial results offer a new dimension to HILIC, enabling it to transform from an occasional HPLC approach for peptide separations to a more generally applicable method.
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Affiliation(s)
- Colin T. Mant
- Department of Biochemistry and Molecular Genetics, University of Colorado Denver, School of Medicine, Aurora, CO 80045, USA
| | - Ziqing Jiang
- Department of Biochemistry and Molecular Genetics, University of Colorado Denver, School of Medicine, Aurora, CO 80045, USA
| | - Barry E. Boyes
- Advanced Materials Technology, Inc., Wilmington, DE 19810, USA
- CCRC, Department of Chemistry, University of Georgia, Athens, GA 30602, USA
| | - Robert S. Hodges
- Department of Biochemistry and Molecular Genetics, University of Colorado Denver, School of Medicine, Aurora, CO 80045, USA
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41
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Schuster G, Lindner W. Comparative characterization of hydrophilic interaction liquid chromatography columns by linear solvation energy relationships. J Chromatogr A 2013; 1273:73-94. [DOI: 10.1016/j.chroma.2012.11.075] [Citation(s) in RCA: 73] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2012] [Revised: 11/23/2012] [Accepted: 11/26/2012] [Indexed: 11/30/2022]
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42
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Lin X, Jia W, Feng S, Lin J, Xie Z. A polymer monolith for hydrophilic and dynamically surfactant-modified reversed-phase capillary electrochromatography. RSC Adv 2013. [DOI: 10.1039/c3ra43377c] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
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43
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Lin X, Lin J, Sun Y, Li Y, Xie Z. A facile versatile polymeric monolith for multiple separations. Analyst 2012; 138:771-4. [PMID: 23223379 DOI: 10.1039/c2an36582k] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A hydrophilic versatile polymeric monolith with multiple retention mechanisms including hydrogen-bonding, π-π and electrostatic interactions, was developed by a simple one-step in situ polymerization. High mechanical stability and excellent separation capabilities of various nonpolar and polar analytes were successfully achieved and employed for multiple separations in mixed-mode chromatography.
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Affiliation(s)
- Xucong Lin
- Institute of food safety and environmental monitoring, Fuzhou University, 350108, China.
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44
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Dong X, Shen A, Gou Z, Chen D, Liang X. Hydrophilic interaction/weak cation-exchange mixed-mode chromatography for chitooligosaccharides separation. Carbohydr Res 2012; 361:195-9. [DOI: 10.1016/j.carres.2012.08.022] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2012] [Revised: 08/30/2012] [Accepted: 08/30/2012] [Indexed: 10/27/2022]
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45
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Chiu CW, Chang CL, Chen SF. Evaluation of peptide fractionation strategies used in proteome analysis. J Sep Sci 2012; 35:3293-301. [DOI: 10.1002/jssc.201200631] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2012] [Revised: 08/13/2012] [Accepted: 08/13/2012] [Indexed: 12/12/2022]
Affiliation(s)
- Chih-Wei Chiu
- Department of Chemistry; National Taiwan Normal University; Taipei; Taiwan
| | - Chun-Lun Chang
- Department of Chemistry; National Taiwan Normal University; Taipei; Taiwan
| | - Sung-Fang Chen
- Department of Chemistry; National Taiwan Normal University; Taipei; Taiwan
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46
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Tian Z, Tolić N, Zhao R, Moore RJ, Hengel SM, Robinson EW, Stenoien DL, Wu S, Smith RD, Paša-Tolić L. Enhanced top-down characterization of histone post-translational modifications. Genome Biol 2012; 13:R86. [PMID: 23034525 PMCID: PMC3491414 DOI: 10.1186/gb-2012-13-10-r86] [Citation(s) in RCA: 102] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2012] [Accepted: 10/03/2012] [Indexed: 02/08/2023] Open
Abstract
Post-translational modifications (PTMs) of core histones work synergistically to fine tune chromatin structure and function, generating a so-called histone code that can be interpreted by a variety of chromatin interacting proteins. We report a novel online two-dimensional liquid chromatography-tandem mass spectrometry (2D LC-MS/MS) platform for high-throughput and sensitive characterization of histone PTMs at the intact protein level. The platform enables unambiguous identification of 708 histone isoforms from a single 2D LC-MS/MS analysis of 7.5 µg purified core histones. The throughput and sensitivity of comprehensive histone modification characterization is dramatically improved compared with more traditional platforms.
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Zhao K, Yang L, Wang X, Bai Q, Yang F, Wang F. Preparation of a novel dual-function strong cation exchange/hydrophobic interaction chromatography stationary phase for protein separation. Talanta 2012; 98:86-94. [PMID: 22939132 DOI: 10.1016/j.talanta.2012.06.050] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/29/2012] [Revised: 06/19/2012] [Accepted: 06/20/2012] [Indexed: 12/20/2022]
Abstract
We have explored a novel dual-function stationary phase which combines both strong cation exchange (SCX) and hydrophobic interaction chromatography (HIC) characteristics. The novel dual-function stationary phase is based on porous and spherical silica gel functionalized with ligand containing sulfonic and benzyl groups capable of electrostatic and hydrophobic interaction functionalities, which displays HIC character in a high salt concentration, and IEC character in a low salt concentration in mobile phase employed. As a result, it can be employed to separate proteins with SCX and HIC modes, respectively. The resolution and selectivity of the dual-function stationary phase were evaluated under both HIC and SCX modes with standard proteins and can be comparable to that of conventional IEC and HIC columns. More than 96% of mass and bioactivity recoveries of proteins can be achieved in both HIC and SCX modes, respectively. The results indicated that the novel dual-function column could replace two individual SCX and HIC columns for protein separation. Mixed retention mechanism of proteins on this dual-function column based on stoichiometric displacement theory (SDT) in LC was investigated to find the optimal balance of the magnitude of electrostatic and hydrophobic interactions between protein and the ligand on the silica surface in order to obtain high resolution and selectivity for protein separation. In addition, the effects of the hydrophobicity of the ligand of the dual-function packings and pH of the mobile phase used on protein separation were also investigated in detail. The results show that the ligand with suitable hydrophobicity to match the electrostatic interaction is very important to prepare the dual-function stationary phase, and a better resolution and selectivity can be obtained at pH 6.5 in SCX mode. Therefore, the dual-function column can replace two individual SCX and HIC columns for protein separation and be used to set up two-dimensional liquid chromatography with a single column (2DLC-1C), which can also be employed to separate three kinds of active proteins completely, such as lysozyme, ovotransferrin and ovalbumin from egg white. The result is very important not only to the development of new 2DLC technology with a single column for proteomics, but also to recombinant protein drug production for saving column expense and simplifying the process in biotechnology.
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Affiliation(s)
- Kailou Zhao
- Key Laboratory of Synthetic and Natural Functional Molecule Chemistry of Ministry of Education, Institute of Modern Separation Science, Northwest University, Xi'an 710069, China
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Sidoli S, Cheng L, Jensen ON. Proteomics in chromatin biology and epigenetics: Elucidation of post-translational modifications of histone proteins by mass spectrometry. J Proteomics 2012; 75:3419-33. [PMID: 22234360 DOI: 10.1016/j.jprot.2011.12.029] [Citation(s) in RCA: 106] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2011] [Revised: 12/18/2011] [Accepted: 12/20/2011] [Indexed: 12/11/2022]
Affiliation(s)
- Simone Sidoli
- Department of Biochemistry and Molecular Biology, University of Southern Denmark, Campusvej 55, DK-5230 Odense M, Denmark
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Hydrophilic properties as a new contribution for computer-aided identification of short peptides in complex mixtures. Anal Bioanal Chem 2012; 403:1939-49. [DOI: 10.1007/s00216-012-5987-6] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2012] [Revised: 03/20/2012] [Accepted: 03/27/2012] [Indexed: 12/28/2022]
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Wang X, Zheng Y, Zhang C, Yang Y, Lin X, Huang G, Xie Z. Preparation and characterization of hybrid-silica monolithic column with mixed-mode of hydrophilic and strong anion-exchange interactions for pressurized capillary electrochromatography. J Chromatogr A 2012; 1239:56-63. [PMID: 22503622 DOI: 10.1016/j.chroma.2012.03.071] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2011] [Revised: 03/19/2012] [Accepted: 03/22/2012] [Indexed: 11/27/2022]
Abstract
A novel organic-silica hybrid monolithic stationary phase with a mixed-mode of hydrophilic and strong anion-exchange interactions (HI-SAX) was prepared with a modified "one-pot" process of functional monomers and alkoxysilanes. Using a hydrosoluble initiator 2,2'-azobis(2-methylpropionamidine) dihydrochloride (AIBA), the homogeneous prepolymerization system of this hybrid monolith was successfully obtained by a simple operation. The polycondensation of alkoxysilanes (tetramethoxysilane (TMOS) and vinyl-trimethoxysilane (VTMS)) and the in situ copolymerization of a quaternary ammonium group-containing acrylic monomer ([2-(acryloyloxy)ethyl] trimethyl ammonium methyl sulfate (AETA)) on the precondensed siloxanes were achieved. The morphologies of the hybrid-silica monolithic matrixes were observed by SEM, and the performances of the organic-silica hybrid monolithic columns were investigated by pressurized capillary electrochromatography. The mechanical stability and reproducibility of the obtained hybrid monolithic column preformed acceptable. Both hydrophilic interaction chromatography mechanism and strong anion-exchanged interaction were investigated. A mixed mode of HI-SAX was obtained for the analysis of nucleotides with a good resolution, and the separation of polar and basic nucleic acid bases and nucleosides was also achieved without peak tailing.
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Affiliation(s)
- Xiao Wang
- Institute of Food Safety and Environmental Monitoring, Fuzhou University, Fuzhou, 350108, China
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