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Hassane AMA, Eldiehy KSH, Saha D, Mohamed H, Mosa MA, Abouelela ME, Abo-Dahab NF, El-Shanawany ARA. Oleaginous fungi: a promising source of biofuels and nutraceuticals with enhanced lipid production strategies. Arch Microbiol 2024; 206:338. [PMID: 38955856 DOI: 10.1007/s00203-024-04054-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2024] [Revised: 06/13/2024] [Accepted: 06/14/2024] [Indexed: 07/04/2024]
Abstract
Oleaginous fungi have attracted a great deal of interest for their potency to accumulate high amounts of lipids (more than 20% of biomass dry weight) and polyunsaturated fatty acids (PUFAs), which have a variety of industrial and biological applications. Lipids of plant and animal origin are related to some restrictions and thus lead to attention towards oleaginous microorganisms as reliable substitute resources. Lipids are traditionally biosynthesized intra-cellularly and involved in the building structure of a variety of cellular compartments. In oleaginous fungi, under certain conditions of elevated carbon ratio and decreased nitrogen in the growth medium, a change in metabolic pathway occurred by switching the whole central carbon metabolism to fatty acid anabolism, which subsequently resulted in high lipid accumulation. The present review illustrates the bio-lipid structure, fatty acid classes and biosynthesis within oleaginous fungi with certain key enzymes, and the advantages of oleaginous fungi over other lipid bio-sources. Qualitative and quantitative techniques for detecting the lipid accumulation capability of oleaginous microbes including visual, and analytical (convenient and non-convenient) were debated. Factors affecting lipid production, and different approaches followed to enhance the lipid content in oleaginous yeasts and fungi, including optimization, utilization of cost-effective wastes, co-culturing, as well as metabolic and genetic engineering, were discussed. A better understanding of the oleaginous fungi regarding screening, detection, and maximization of lipid content using different strategies could help to discover new potent oleaginous isolates, exploit and recycle low-cost wastes, and improve the efficiency of bio-lipids cumulation with biotechnological significance.
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Affiliation(s)
- Abdallah M A Hassane
- Department of Botany and Microbiology, Faculty of Science, Al-Azhar University, P.O. Box 71524, Assiut, Egypt.
| | - Khalifa S H Eldiehy
- Department of Botany and Microbiology, Faculty of Science, Al-Azhar University, P.O. Box 71524, Assiut, Egypt
| | - Debanjan Saha
- Department of Molecular Biology and Biotechnology, Tezpur University, P.O. Box 784028, Assam, India
| | - Hassan Mohamed
- Department of Botany and Microbiology, Faculty of Science, Al-Azhar University, P.O. Box 71524, Assiut, Egypt
- Colin Ratledge Center for Microbial Lipids, School of Agricultural Engineering and Food Science, Shandong University of Technology, P.O. Box 255000, Zibo, China
| | - Mohamed A Mosa
- Nanotechnology and Advanced Nano-Materials Laboratory (NANML), Plant Pathology Research Institute, Agricultural Research Center, P.O. Box 12619, Giza, Egypt
| | - Mohamed E Abouelela
- Department of Pharmacognosy, Faculty of Pharmacy, Al-Azhar University, P.O. Box 11884, Cairo, Egypt
| | - Nageh F Abo-Dahab
- Department of Botany and Microbiology, Faculty of Science, Al-Azhar University, P.O. Box 71524, Assiut, Egypt
| | - Abdel-Rehim A El-Shanawany
- Department of Botany and Microbiology, Faculty of Science, Al-Azhar University, P.O. Box 71524, Assiut, Egypt
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2
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Ma W, Liu M, Zhang Z, Xu Y, Huang P, Guo D, Sun X, Huang H. Efficient co-production of EPA and DHA by Schizochytrium sp. via regulation of the polyketide synthase pathway. Commun Biol 2022; 5:1356. [PMID: 36494568 PMCID: PMC9734096 DOI: 10.1038/s42003-022-04334-4] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2022] [Accepted: 12/01/2022] [Indexed: 12/13/2022] Open
Abstract
Presently, the supply of eicosapentaenoic acid (EPA) and docosahexaenoic acid (DHA) traditionally produced by marine fisheries will be insufficient to meet their market demand in food industry. Thus a sustainable alternative source is urgently required. Schizochytrium sp. is an ideal producer of DHA; however, its ability to co-produce DHA and EPA has not yet been proved. Herein, we first described a cobalamin-independent methionine synthase-like (MetE-like) complex, which contains independent acyltransferase and 3-ketoacyl synthase domains, independent of the traditional polyketide synthase (PKS) system. When the MetE-like complex was activated, the EPA content was increased from 1.26% to 7.63%, which is 6.06-folds higher than that in the inactivated condition. Through lipidomics, we find that EPA is more inclined to be stored as triglyceride. Finally, the EPA production was enhanced from 4.19 to 29.83 (mg/g cell dry weight) using mixed carbon sources, and the final yield reached 2.25 g/L EPA and 9.59 g/L DHA, which means that Schizochytrium sp. has great market potential for co-production of EPA and DHA.
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Affiliation(s)
- Wang Ma
- grid.260474.30000 0001 0089 5711School of Food Science and Pharmaceutical Engineering, Nanjing Normal University, 2 Xuelin Road, Qixia District, Nanjing, China ,grid.260474.30000 0001 0089 5711College of Life Sciences, Nanjing Normal University, 2 Xuelin Road, Qixia District, Nanjing, China
| | - Mengzhen Liu
- grid.260474.30000 0001 0089 5711School of Food Science and Pharmaceutical Engineering, Nanjing Normal University, 2 Xuelin Road, Qixia District, Nanjing, China
| | - Zixu Zhang
- grid.260474.30000 0001 0089 5711School of Food Science and Pharmaceutical Engineering, Nanjing Normal University, 2 Xuelin Road, Qixia District, Nanjing, China
| | - Yingshuang Xu
- grid.260474.30000 0001 0089 5711School of Food Science and Pharmaceutical Engineering, Nanjing Normal University, 2 Xuelin Road, Qixia District, Nanjing, China
| | - Pengwei Huang
- grid.260474.30000 0001 0089 5711School of Food Science and Pharmaceutical Engineering, Nanjing Normal University, 2 Xuelin Road, Qixia District, Nanjing, China ,grid.260474.30000 0001 0089 5711College of Life Sciences, Nanjing Normal University, 2 Xuelin Road, Qixia District, Nanjing, China
| | - Dongsheng Guo
- grid.260474.30000 0001 0089 5711School of Food Science and Pharmaceutical Engineering, Nanjing Normal University, 2 Xuelin Road, Qixia District, Nanjing, China
| | - Xiaoman Sun
- grid.260474.30000 0001 0089 5711School of Food Science and Pharmaceutical Engineering, Nanjing Normal University, 2 Xuelin Road, Qixia District, Nanjing, China
| | - He Huang
- grid.260474.30000 0001 0089 5711School of Food Science and Pharmaceutical Engineering, Nanjing Normal University, 2 Xuelin Road, Qixia District, Nanjing, China ,grid.412022.70000 0000 9389 5210College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University, No. 30 South Puzhu Road, Nanjing, China
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3
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Li YW, Guo Q, Peng QQ, Shen Q, Nie ZK, Ye C, Shi TQ. Recent Development of Advanced Biotechnology in the Oleaginous Fungi for Arachidonic Acid Production. ACS Synth Biol 2022; 11:3163-3173. [PMID: 36221956 DOI: 10.1021/acssynbio.2c00483] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
Abstract
Arachidonic acid is an essential ω-6 polyunsaturated fatty acid, which plays a significant role in cardiovascular health and neurological development, leading to its wide use in the food and pharmaceutical industries. Traditionally, ARA is obtained from deep-sea fish oil. However, this source is limited by season and is depleting the already threatened global fish stocks. With the rapid development of synthetic biology in recent years, oleaginous fungi have gradually attracted increasing attention as promising microbial sources for large-scale ARA production. Numerous advanced technologies including metabolic engineering, dynamic regulation of fermentation conditions, and multiomics analysis were successfully adapted to increase ARA synthesis. This review summarizes recent advances in the bioengineering of oleaginous fungi for ARA production. Finally, perspectives for future engineering approaches are proposed to further improve the titer yield and productivity of ARA.
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Affiliation(s)
- Ya-Wen Li
- School of Food Science and Pharmaceutical Engineering, Nanjing Normal University, 2 Xuelin Road, Qixia District, Nanjing 210046, People's Republic of China
| | - Qi Guo
- School of Food Science and Pharmaceutical Engineering, Nanjing Normal University, 2 Xuelin Road, Qixia District, Nanjing 210046, People's Republic of China.,College of Pharmaceutical Sciences, Nanjing Tech University, No. 30 South Puzhu Road, Nanjing 211816, People's Republic of China
| | - Qian-Qian Peng
- School of Food Science and Pharmaceutical Engineering, Nanjing Normal University, 2 Xuelin Road, Qixia District, Nanjing 210046, People's Republic of China
| | - Qi Shen
- School of Food Science and Pharmaceutical Engineering, Nanjing Normal University, 2 Xuelin Road, Qixia District, Nanjing 210046, People's Republic of China
| | - Zhi-Kui Nie
- School of Food Science and Pharmaceutical Engineering, Nanjing Normal University, 2 Xuelin Road, Qixia District, Nanjing 210046, People's Republic of China.,Jiangxi New Reyphon Biochemical Co., Ltd, Salt & Chemical Industry, Xingan, Jiangxi 331399, People's Republic of China
| | - Chao Ye
- School of Food Science and Pharmaceutical Engineering, Nanjing Normal University, 2 Xuelin Road, Qixia District, Nanjing 210046, People's Republic of China
| | - Tian-Qiong Shi
- School of Food Science and Pharmaceutical Engineering, Nanjing Normal University, 2 Xuelin Road, Qixia District, Nanjing 210046, People's Republic of China.,College of Food Science and Technology, Nanchang University, No. 999 Xuefu Road, Nanchang 330031, People's Republic of China
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4
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Shah AM, Yang W, Mohamed H, Zhang Y, Song Y. Microbes: A Hidden Treasure of Polyunsaturated Fatty Acids. Front Nutr 2022; 9:827837. [PMID: 35369055 PMCID: PMC8968027 DOI: 10.3389/fnut.2022.827837] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2021] [Accepted: 02/21/2022] [Indexed: 12/26/2022] Open
Abstract
Microbes have gained a lot of attention for their potential in producing polyunsaturated fatty acids (PUFAs). PUFAs are gaining scientific interest due to their important health-promoting effects on higher organisms including humans. The current sources of PUFAs (animal and plant) have associated limitations that have led to increased interest in microbial PUFAs as most reliable alternative source. The focus is on increasing the product value of existing oleaginous microbes or discovering new microbes by implementing new biotechnological strategies in order to compete with other sources. The multidisciplinary approaches, including metabolic engineering, high-throughput screening, tapping new microbial sources, genome-mining as well as co-culturing and elicitation for the production of PUFAs, have been considered and discussed in this review. The usage of agro-industrial wastes as alternative low-cost substrates in fermentation for high-value single-cell oil production has also been discussed. Multidisciplinary approaches combined with new technologies may help to uncover new microbial PUFA sources that may have nutraceutical and biotechnological importance.
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Affiliation(s)
- Aabid Manzoor Shah
- Colin Ratledge Center of Microbial Lipids, School of Agriculture Engineering and Food Sciences, Shandong University of Technology, Zibo, China
| | - Wu Yang
- Colin Ratledge Center of Microbial Lipids, School of Agriculture Engineering and Food Sciences, Shandong University of Technology, Zibo, China
| | - Hassan Mohamed
- Colin Ratledge Center of Microbial Lipids, School of Agriculture Engineering and Food Sciences, Shandong University of Technology, Zibo, China
- Department of Botany and Microbiology, Faculty of Science, Al-Azhar University, Assiut, Egypt
| | - Yingtong Zhang
- Institute of Agricultural Facilities and Equipment, Jiangsu Academy of Agricultural Sciences, Nanjing, China
| | - Yuanda Song
- Colin Ratledge Center of Microbial Lipids, School of Agriculture Engineering and Food Sciences, Shandong University of Technology, Zibo, China
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5
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Soccol CR, Colonia BSO, de Melo Pereira GV, Mamani LDG, Karp SG, Thomaz Soccol V, Penha RDO, Dalmas Neto CJ, César de Carvalho J. Bioprospecting lipid-producing microorganisms: From metagenomic-assisted isolation techniques to industrial application and innovations. BIORESOURCE TECHNOLOGY 2022; 346:126455. [PMID: 34863851 DOI: 10.1016/j.biortech.2021.126455] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/26/2021] [Revised: 11/24/2021] [Accepted: 11/26/2021] [Indexed: 06/13/2023]
Abstract
Traditionally, lipid-producing microorganisms have been obtained via conventional bioprospecting based on isolation and screening techniques, demanding time and effort. Thus, high-throughput sequencing combined with conventional microbiological approaches has emerged as an advanced and rapid strategy for recovering novel oleaginous microorganisms from target environments. This review highlights recent developments in lipid-producing microorganism bioprospecting, following (i) from traditional cultivation techniques to state-of-the-art metagenomics approaches; (ii) related topics on workflow, next-generation sequencing platforms, and knowledge bioinformatics; and (iii) biotechnological potential of the production of docosahexaenoic acid (DHA) by Aurantiochytrium limacinum, arachidonic acid (ARA) by Mortierella alpina and biodiesel by Rhodosporidium toruloides. These three species have been shown to be highly promising and studied in research articles, patents and commercialized products. Trends, innovations and future perspectives of these microorganisms are also addressed. Thus, these microbial lipids allow the development of food, feed and biofuels as alternative solutions to animal and vegetable oils.
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Affiliation(s)
- Carlos Ricardo Soccol
- Department of Bioprocess Engineering and Biotechnology, Federal University of Paraná (UFPR), 81531-970 Curitiba, PR, Brazil.
| | | | | | - Luis Daniel Goyzueta Mamani
- Department of Bioprocess Engineering and Biotechnology, Federal University of Paraná (UFPR), 81531-970 Curitiba, PR, Brazil
| | - Susan Grace Karp
- Department of Bioprocess Engineering and Biotechnology, Federal University of Paraná (UFPR), 81531-970 Curitiba, PR, Brazil
| | - Vanete Thomaz Soccol
- Department of Bioprocess Engineering and Biotechnology, Federal University of Paraná (UFPR), 81531-970 Curitiba, PR, Brazil
| | - Rafaela de Oliveira Penha
- Department of Bioprocess Engineering and Biotechnology, Federal University of Paraná (UFPR), 81531-970 Curitiba, PR, Brazil
| | - Carlos José Dalmas Neto
- Department of Bioprocess Engineering and Biotechnology, Federal University of Paraná (UFPR), 81531-970 Curitiba, PR, Brazil
| | - Júlio César de Carvalho
- Department of Bioprocess Engineering and Biotechnology, Federal University of Paraná (UFPR), 81531-970 Curitiba, PR, Brazil
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6
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Chi G, Xu Y, Cao X, Li Z, Cao M, Chisti Y, He N. Production of polyunsaturated fatty acids by Schizochytrium (Aurantiochytrium) spp. Biotechnol Adv 2021; 55:107897. [PMID: 34974158 DOI: 10.1016/j.biotechadv.2021.107897] [Citation(s) in RCA: 32] [Impact Index Per Article: 10.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2021] [Revised: 12/05/2021] [Accepted: 12/20/2021] [Indexed: 12/28/2022]
Abstract
Diverse health benefits are associated with dietary consumption of omega-3 long-chain polyunsaturated fatty acids (ω-3 LC-PUFA), particularly docosahexaenoic acid (DHA) and eicosapentaenoic acid (EPA). Traditionally, these fatty acids have been obtained from fish oil, but limited supply, variably quality, and an inability to sustainably increase production for a rapidly growing market, are driving the quest for alternative sources. DHA derived from certain marine protists (heterotrophic thraustochytrids) already has an established history of commercial production for high-value dietary use, but is too expensive for use in aquaculture feeds, a much larger potential market for ω-3 LC-PUFA. Sustainable expansion of aquaculture is prevented by its current dependence on wild-caught fish oil as the source of ω-3 LC-PUFA nutrients required in the diet of aquacultured animals. Although several thraustochytrids have been shown to produce DHA and EPA, there is a particular interest in Schizochytrium spp. (now Aurantiochytrium spp.), as some of the better producers. The need for larger scale production has resulted in development of many strategies for improving productivity and production economics of ω-3 PUFA in Schizochytrium spp. Developments in fermentation technology and metabolic engineering for enhancing LC-PUFA production in Schizochytrium spp. are reviewed.
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Affiliation(s)
- Guoxiang Chi
- Department of Chemical and Biochemical Engineering, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, China; The Key Laboratory for Synthetic Biotechnology of Xiamen City, Xiamen University, Xiamen 361005, China
| | - Yiyuan Xu
- Department of Chemical and Biochemical Engineering, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, China; The Key Laboratory for Synthetic Biotechnology of Xiamen City, Xiamen University, Xiamen 361005, China
| | - Xingyu Cao
- Department of Chemical and Biochemical Engineering, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, China; The Key Laboratory for Synthetic Biotechnology of Xiamen City, Xiamen University, Xiamen 361005, China
| | - Zhipeng Li
- College of Food and Biological Engineering, Jimei University, Xiamen 361000, China
| | - Mingfeng Cao
- Department of Chemical and Biochemical Engineering, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, China; The Key Laboratory for Synthetic Biotechnology of Xiamen City, Xiamen University, Xiamen 361005, China.
| | - Yusuf Chisti
- School of Engineering, Massey University, Private Bag 11 222, Palmerston North, New Zealand.
| | - Ning He
- Department of Chemical and Biochemical Engineering, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, China; The Key Laboratory for Synthetic Biotechnology of Xiamen City, Xiamen University, Xiamen 361005, China.
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7
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Ishibashi Y, Goda H, Hamaguchi R, Sakaguchi K, Sekiguchi T, Ishiwata Y, Okita Y, Mochinaga S, Ikeuchi S, Mizobuchi T, Takao Y, Mori K, Tashiro K, Okino N, Honda D, Hayashi M, Ito M. PUFA synthase-independent DHA synthesis pathway in Parietichytrium sp. and its modification to produce EPA and n-3DPA. Commun Biol 2021; 4:1378. [PMID: 34887503 PMCID: PMC8660808 DOI: 10.1038/s42003-021-02857-w] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2021] [Accepted: 10/26/2021] [Indexed: 01/09/2023] Open
Abstract
The demand for n-3 long-chain polyunsaturated fatty acids (n-3LC-PUFAs), such as docosahexaenoic acid (DHA) and eicosapentaenoic acid (EPA), will exceed their supply in the near future, and a sustainable source of n-3LC-PUFAs is needed. Thraustochytrids are marine protists characterized by anaerobic biosynthesis of DHA via polyunsaturated fatty acid synthase (PUFA-S). Analysis of a homemade draft genome database suggested that Parietichytrium sp. lacks PUFA-S but possesses all fatty acid elongase (ELO) and desaturase (DES) genes required for DHA synthesis. The reverse genetic approach and a tracing experiment using stable isotope-labeled fatty acids revealed that the ELO/DES pathway is the only DHA synthesis pathway in Parietichytrium sp. Disruption of the C20 fatty acid ELO (C20ELO) and ∆4 fatty acid DES (∆4DES) genes with expression of ω3 fatty acid DES in this thraustochytrid allowed the production of EPA and n-3docosapentaenoic acid (n-3DPA), respectively, at the highest level among known microbial sources using fed-batch culture.
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Affiliation(s)
- Yohei Ishibashi
- grid.177174.30000 0001 2242 4849Department of Bioscience and Biotechnology, Faculty of Agriculture, Kyushu University, Fukuoka, 819-0395 Japan
| | - Hatsumi Goda
- grid.177174.30000 0001 2242 4849Department of Bioscience and Biotechnology, Faculty of Agriculture, Kyushu University, Fukuoka, 819-0395 Japan
| | - Rie Hamaguchi
- grid.177174.30000 0001 2242 4849Department of Bioscience and Biotechnology, Faculty of Agriculture, Kyushu University, Fukuoka, 819-0395 Japan
| | - Keishi Sakaguchi
- grid.177174.30000 0001 2242 4849Department of Bioscience and Biotechnology, Faculty of Agriculture, Kyushu University, Fukuoka, 819-0395 Japan
| | - Takayoshi Sekiguchi
- grid.509816.30000 0001 2161 8131Central Research Laboratory, Nippon Suisan Kaisha, Ltd., Tokyo, 192-0991 Japan
| | - Yuko Ishiwata
- grid.509816.30000 0001 2161 8131Central Research Laboratory, Nippon Suisan Kaisha, Ltd., Tokyo, 192-0991 Japan
| | - Yuji Okita
- grid.509816.30000 0001 2161 8131Central Research Laboratory, Nippon Suisan Kaisha, Ltd., Tokyo, 192-0991 Japan
| | - Seiya Mochinaga
- grid.177174.30000 0001 2242 4849Department of Bioscience and Biotechnology, Faculty of Agriculture, Kyushu University, Fukuoka, 819-0395 Japan
| | - Shingo Ikeuchi
- grid.177174.30000 0001 2242 4849Department of Bioscience and Biotechnology, Faculty of Agriculture, Kyushu University, Fukuoka, 819-0395 Japan
| | - Takahiro Mizobuchi
- grid.177174.30000 0001 2242 4849Department of Bioscience and Biotechnology, Faculty of Agriculture, Kyushu University, Fukuoka, 819-0395 Japan
| | - Yoshitake Takao
- Department of Marine Science and Technology, Faculty of Marine Science and Technology, Fukui Prefecture University, Fukui, 917-0003 Japan
| | - Kazuki Mori
- grid.177174.30000 0001 2242 4849Department of Bioscience and Biotechnology, Faculty of Agriculture, Kyushu University, Fukuoka, 819-0395 Japan
| | - Kosuke Tashiro
- grid.177174.30000 0001 2242 4849Department of Bioscience and Biotechnology, Faculty of Agriculture, Kyushu University, Fukuoka, 819-0395 Japan
| | - Nozomu Okino
- grid.177174.30000 0001 2242 4849Department of Bioscience and Biotechnology, Faculty of Agriculture, Kyushu University, Fukuoka, 819-0395 Japan
| | - Daiske Honda
- grid.258669.60000 0000 8565 5938Department of Biology, Faculty of Science and Engineering, Konan University, Hyogo, 658-8501 Japan ,grid.258669.60000 0000 8565 5938Institute for Integrative Neurobiology, Konan University, Hyogo, 658-8501 Japan
| | - Masahiro Hayashi
- grid.410849.00000 0001 0657 3887Department of Marine Biology and Environmental Sciences, Faculty of Agriculture, University of Miyazaki, Miyazaki, 889-2192 Japan
| | - Makoto Ito
- Department of Bioscience and Biotechnology, Faculty of Agriculture, Kyushu University, Fukuoka, 819-0395, Japan. .,Innovative Bio-architecture Center, Faculty of Agriculture, Kyushu University, Fukuoka, 819-0395, Japan.
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8
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Jia YL, Geng SS, Du F, Xu YS, Wang LR, Sun XM, Wang QZ, Li Q. Progress of metabolic engineering for the production of eicosapentaenoic acid. Crit Rev Biotechnol 2021; 42:838-855. [PMID: 34779326 DOI: 10.1080/07388551.2021.1971621] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
Abstract
Eicosapentaenoic Acid (EPA) is an essential ω-3 polyunsaturated fatty acid for human health. Currently, high-quality EPA production is largely dependent on the extraction of fish oil, but this unsustainable approach cannot meet its rising market demand. Biotechnological approaches for EPA production from microorganisms have received increasing attention due to their suitability for large-scale production and independence of the seasonal or climate restrictions. This review summarizes recent research on different microorganisms capable of producing EPA, such as microalgae, bacteria, and fungi, and introduces the different EPA biosynthesis pathways. Notably, some novel engineering strategies have been applied to endow and improve the abilities of microorganisms to synthesize EPA, including the construction and optimization of the EPA biosynthesis pathway, an increase in the acetyl-CoA pool supply, the increase of NADPH and the inhibition of competing pathways. This review aims to provide an updated summary of EPA production.
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Affiliation(s)
- Yu-Lei Jia
- School of Food Science and Pharmaceutical Engineering, Nanjing Normal University, Nanjing, People's Republic of China
| | - Shan-Shan Geng
- School of Food Science and Pharmaceutical Engineering, Nanjing Normal University, Nanjing, People's Republic of China
| | - Fei Du
- School of Food Science and Pharmaceutical Engineering, Nanjing Normal University, Nanjing, People's Republic of China
| | - Ying-Shuang Xu
- School of Food Science and Pharmaceutical Engineering, Nanjing Normal University, Nanjing, People's Republic of China
| | - Ling-Ru Wang
- School of Food Science and Pharmaceutical Engineering, Nanjing Normal University, Nanjing, People's Republic of China
| | - Xiao-Man Sun
- School of Food Science and Pharmaceutical Engineering, Nanjing Normal University, Nanjing, People's Republic of China
| | - Qing-Zhuo Wang
- School of Food Science and Pharmaceutical Engineering, Nanjing Normal University, Nanjing, People's Republic of China
| | - Qi Li
- College of Life Sciences, Sichuan Normal University, Chengdu, People's Republic of China
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9
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Chang L, Chen H, Tang X, Zhao J, Zhang H, Chen YQ, Chen W. Advances in improving the biotechnological application of oleaginous fungus Mortierella alpina. Appl Microbiol Biotechnol 2021; 105:6275-6289. [PMID: 34424385 DOI: 10.1007/s00253-021-11480-y] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2021] [Revised: 07/22/2021] [Accepted: 07/23/2021] [Indexed: 12/20/2022]
Abstract
Mortierella alpina is an oleaginous filamentous fungus with considerable lipid productivity, and it has been widely used for industrial production of arachidonic acid. The fermentation process of M. alpina is complicated and can be affected by various factors; therefore, a comprehensive knowledge of its metabolic characteristics and key factors governing lipid biosynthesis is required to further improve its industrial performance. In this review, we discuss the metabolic features and extracellular factors that affect lipid biosynthesis in M. alpina. The current progress in fermentation optimisation and metabolic engineering to improve lipid yield are also summarised. Moreover, we review the applications of M. alpina in the food industry and propose fermentation strategies for better utilisation of this genus in the future. In our opinion, the economic performance of M. alpina should be enhanced from multiple levels, including strains with ideal traits, efficient fermentation strategies, controllable fermentation costs, and competitive products of both high value and productivity. By reviewing the peculiarities of M. alpina and current progress to improve its suitability for biotechnological production, we wish to provide more efficient strategies for future development of M. alpina as a high-value lipid cell factory. KEY POINTS: • Understanding M. alpina metabolism is helpful for rational design of its fermentation processes. • Nitrogen source is a key point that affects PUFA's component and fermentation cost in M. alpina. • Dynamic fermentation strategy combined with breeding is needed to increase lipid yield in M. alpina.
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Affiliation(s)
- Lulu Chang
- State Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi, Jiangsu, 214122, People's Republic of China
- School of Food Science and Technology, Jiangnan University, 1800 Lihu Avenue, Wuxi, Jiangsu, 214122, People's Republic of China
| | - Haiqin Chen
- State Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi, Jiangsu, 214122, People's Republic of China.
- School of Food Science and Technology, Jiangnan University, 1800 Lihu Avenue, Wuxi, Jiangsu, 214122, People's Republic of China.
| | - Xin Tang
- State Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi, Jiangsu, 214122, People's Republic of China
- School of Food Science and Technology, Jiangnan University, 1800 Lihu Avenue, Wuxi, Jiangsu, 214122, People's Republic of China
| | - Jianxin Zhao
- State Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi, Jiangsu, 214122, People's Republic of China
- School of Food Science and Technology, Jiangnan University, 1800 Lihu Avenue, Wuxi, Jiangsu, 214122, People's Republic of China
| | - Hao Zhang
- State Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi, Jiangsu, 214122, People's Republic of China
- School of Food Science and Technology, Jiangnan University, 1800 Lihu Avenue, Wuxi, Jiangsu, 214122, People's Republic of China
| | - Yong Q Chen
- State Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi, Jiangsu, 214122, People's Republic of China
- School of Food Science and Technology, Jiangnan University, 1800 Lihu Avenue, Wuxi, Jiangsu, 214122, People's Republic of China
- Wuxi School of Medicine, Jiangnan University, Wuxi, Jiangsu, 214122, People's Republic of China
- National Engineering Research Center for Functional Food, Jiangnan University, Wuxi, Jiangsu, 214122, People's Republic of China
- Department of Cancer Biology, Wake Forest University School of Medicine, Winston-Salem, NC, 27157, USA
| | - Wei Chen
- State Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi, Jiangsu, 214122, People's Republic of China
- School of Food Science and Technology, Jiangnan University, 1800 Lihu Avenue, Wuxi, Jiangsu, 214122, People's Republic of China
- National Engineering Research Center for Functional Food, Jiangnan University, Wuxi, Jiangsu, 214122, People's Republic of China
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10
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Clostridium butyricum MIYAIRI 588 Modifies Bacterial Composition under Antibiotic-Induced Dysbiosis for the Activation of Interactions via Lipid Metabolism between the Gut Microbiome and the Host. Biomedicines 2021; 9:biomedicines9081065. [PMID: 34440269 PMCID: PMC8391242 DOI: 10.3390/biomedicines9081065] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2021] [Revised: 08/16/2021] [Accepted: 08/17/2021] [Indexed: 12/13/2022] Open
Abstract
The gut microbiome is closely related to gut metabolic functions, and the gut microbiome and host metabolic functions affect each other. Clostridium butyricum MIYAIRI 588 (CBM 588) upregulates protectin D1 production in host colon tissue following G protein-coupled receptor (GPR) 120 activation to protect gut epithelial cells under antibiotic-induced dysbiosis. However, how CBM 588 enhances polyunsaturated fatty acid (PUFA) metabolites remains unclear. Therefore, we focused on the metabolic function alterations of the gut microbiome after CBM 588 and protectin D1 administration to reveal the interaction between the host and gut microbiome through lipid metabolism during antibiotic-induced dysbiosis. Consequently, CBM 588 modified gut microbiome and increased the butyric acid and oleic acid content. These lipid metabolic modifications induced GPR activation, which is a trigger of ERK 1/2 signaling and directed differentiation of downstream immune cells in the host colon tissue. Moreover, endogenous protectin D1 modified the gut microbiome, similar to CBM 588. This is the first study to report that CBM 588 influences the interrelationship between colon tissue and the gut microbiome through lipid metabolism. These findings provide insights into the mechanisms of prevention and recovery from inflammation and the improvement of host metabolism by CBM 588.
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11
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Jia YL, Wang LR, Zhang ZX, Gu Y, Sun XM. Recent advances in biotechnological production of polyunsaturated fatty acids by Yarrowia lipolytica. Crit Rev Food Sci Nutr 2021; 62:8920-8934. [PMID: 34120537 DOI: 10.1080/10408398.2021.1937041] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Abstract
Owing to the important physiological functions, polyunsaturated fatty acids (PUFAs) play a vital role in protecting human health, such as preventing cancer, cardiovascular disease, and diabetes. Specifically, Yarrowia lipolytica has been identified as the most popular non-conventional oleaginous yeast, which can accumulate the abundant intracellular lipids, indicating that has great potential as an industrial host for production of PUFAs. Notably, some novel engineering strategies have been applied to endow and improve the abilities of Y. lipolytica to synthesize PUFAs, including construction and optimization of PUFAs biosynthetic pathways, improvement of preucrsors acetyl-coA and NADPH supply, inhibition of competing pathways, knockout of β-oxidation pathways, regulation of oxidative stress defense pathways, and regulation of genes involved in upstream lipid metabolism. Besides, some bypass approaches, such as strain mating, evolutionary engineering, and computational model based on omics, also have been proposed to improve the performance of engineering strains. Generally, in this review, we summarized the recent advances in engineering strategies and bypass approaches for improving PUFAs production by Y. lipolytica. In addition, we further summarized the latest efforts of CRISPR/Cas genome editing technology in Y. lipolytica, which is aimed to provide its potential applications in PUFAs production.
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Affiliation(s)
- Yu-Lei Jia
- School of Food Science and Pharmaceutical Engineering, Nanjing Normal University, Nanjing, People's Republic of China
| | - Ling-Ru Wang
- School of Food Science and Pharmaceutical Engineering, Nanjing Normal University, Nanjing, People's Republic of China
| | - Zi-Xu Zhang
- School of Food Science and Pharmaceutical Engineering, Nanjing Normal University, Nanjing, People's Republic of China
| | - Yang Gu
- School of Food Science and Pharmaceutical Engineering, Nanjing Normal University, Nanjing, People's Republic of China
| | - Xiao-Man Sun
- School of Food Science and Pharmaceutical Engineering, Nanjing Normal University, Nanjing, People's Republic of China
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12
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A Futile Metabolic Cycle of Fatty Acyl-CoA Hydrolysis and Resynthesis in Corynebacterium glutamicum and Its Disruption Leading to Fatty Acid Production. Appl Environ Microbiol 2021; 87:AEM.02469-20. [PMID: 33310719 PMCID: PMC7851686 DOI: 10.1128/aem.02469-20] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022] Open
Abstract
Fatty acyl-CoA thioesterase (Tes) and acyl-CoA synthetase (FadD) catalyze opposing reactions between acyl-CoAs and free fatty acids. Within the genome of Corynebacterium glutamicum, several candidate genes for each enzyme are present, although their functions remain unknown. Modified expressions of the candidate genes in the fatty acid producer WTΔfasR led to identification of one tes gene (tesA) and two fadD genes (fadD5 and fadD15), which functioned positively and negatively in fatty acid production, respectively. Genetic analysis showed that fadD5 and fadD15 are responsible for utilization of exogenous fatty acids and that tesA plays a role in supplying fatty acids for synthesis of the outer layer components mycolic acids. Enzyme assays and expression analysis revealed that tesA, fadD5, and fadD15 were co-expressed to create a cyclic route between acyl-CoAs and fatty acids. When fadD5 or fadD15 was disrupted in wild-type C. glutamicum, both disruptants excreted fatty acids during growth. Double disruptions of them resulted in a synergistic increase in production. Additional disruption of tesA revealed a canceling effect on production. These results indicate that the FadDs normally shunt the surplus of TesA-generated fatty acids back to acyl-CoAs for lipid biosynthesis and that interception of this shunt provokes cells to overproduce fatty acids. When this strategy was applied to a fatty acid high-producer, the resulting fadDs-disrupted and tesA-amplified strain exhibited a 72% yield increase relative to its parent and produced fatty acids, which consisted mainly of oleic acid, palmitic acid, and stearic acid, on the gram scale per liter from 1% glucose.IMPORTANCE The industrial amino acid producer Corynebacterium glutamicum has currently evolved into a potential workhorse for fatty acid production. In this organism, we obtained evidence showing the presence of a unique mechanism of lipid homeostasis, namely, a formation of a futile cycle of acyl-CoA hydrolysis and resynthesis mediated by acyl-CoA thioesterase (Tes) and acyl-CoA synthetase (FadD), respectively. The biological role of the coupling of Tes and FadD would be to supply free fatty acids for synthesis of the outer layer components mycolic acids and to recycle their surplusage to acyl-CoAs for membrane lipid synthesis. We further demonstrated that engineering of the cycle in a fatty acid high-producer led to dramatically improved production, which provides a useful engineering strategy for fatty acid production in this industrially important microorganism.
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13
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Kothri M, Mavrommati M, Elazzazy AM, Baeshen MN, Moussa TAA, Aggelis G. Microbial sources of polyunsaturated fatty acids (PUFAs) and the prospect of organic residues and wastes as growth media for PUFA-producing microorganisms. FEMS Microbiol Lett 2020; 367:5735438. [PMID: 32053204 DOI: 10.1093/femsle/fnaa028] [Citation(s) in RCA: 42] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2019] [Accepted: 02/11/2020] [Indexed: 12/17/2022] Open
Abstract
The discovery of non-fish sources of polyunsaturated fatty acids (PUFAs) is of great biotechnological importance. Although various oleaginous microalgae and fungi are able of accumulating storage lipids (single cell oils - SCOs) containing PUFAs, the industrial applications utilizing these organisms are rather limited due to the high-fermentation cost. However, combining SCO production with other biotechnological applications, including waste and by-product valorization, can overcome this difficulty. In the current review, we present the major sources of fungi (i.e. members of Mucoromycota, fungoid-like Thraustochytrids and genetically modified strains of Yarrowia lipolytica) and microalgae (e.g. Isochrysis, NannochloropsisandTetraselmis) that have come recently to the forefront due to their ability to produce PUFAs. Approaches adopted in order to increase PUFA productivity and the potential of using various residues, such as agro-industrial, food and aquaculture wastes as fermentation substrates for SCO production have been considered and discussed. We concluded that several organic residues can be utilized as feedstock in the SCO production increasing the competitiveness of oleaginous organisms against conventional PUFA producers.
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Affiliation(s)
- Maria Kothri
- Unit of Microbiology, Division of Genetics, Cell and Developmental Biology, Department of Biology, University of Patras, 26504 Patras, Greece
| | - Maria Mavrommati
- Unit of Microbiology, Division of Genetics, Cell and Developmental Biology, Department of Biology, University of Patras, 26504 Patras, Greece
| | - Ahmed M Elazzazy
- Department of Biology, Faculty of Science, University of Jeddah, 23218 Jeddah, Saudi Arabi.,Department of Chemistry of Natural and Microbial Products, Division of Pharmaceutical and Drug Industries, National Research Centre, 12622 Dokki, Giza, Egypt
| | - Mohamed N Baeshen
- Department of Biology, Faculty of Science, University of Jeddah, 23218 Jeddah, Saudi Arabi
| | - Tarek A A Moussa
- Department of Biology, Faculty of Science, University of Jeddah, 23218 Jeddah, Saudi Arabi.,Botany and Microbiology Department, Faculty of Science, Cairo University, 12613 Giza, Egypt
| | - George Aggelis
- Unit of Microbiology, Division of Genetics, Cell and Developmental Biology, Department of Biology, University of Patras, 26504 Patras, Greece.,Department of Biology, Faculty of Science, University of Jeddah, 23218 Jeddah, Saudi Arabi
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14
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Recent advances in functional analysis of polyunsaturated fatty acid synthases. Curr Opin Chem Biol 2020; 59:30-36. [PMID: 32442859 DOI: 10.1016/j.cbpa.2020.04.015] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2020] [Revised: 04/12/2020] [Accepted: 04/16/2020] [Indexed: 01/23/2023]
Abstract
Polyunsaturated fatty acids (PUFAs) such as docosahexaenoic acid, eicosapentaenoic acid, and arachidonic acid are essential fatty acids for humans. PUFAs are biosynthesized by either desaturases/elongases from oleic acid or PUFA synthases from acetyl units. PUFA synthases are composed of three or four subunits, and each creates a specific PUFA even though the multiple catalytic domains in each subunit are very similar. We recently dissected these PUFA synthases by in vivo and in vitro experiments and elucidated how the enzymes control PUFA profiles. Moreover, for the first time, we converted a practical microalgal docosahexaenoic acid synthase into an eicosapentaenoic acid synthase based on the results.
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15
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Naka M, Ikeuchi K, Hayashi S, Satoh Y, Ogasawara Y, Dairi T. Subtle Control of Carbon Chain Length in Polyunsaturated Fatty Acid Synthases. ACS Chem Biol 2019; 14:2553-2556. [PMID: 31724849 DOI: 10.1021/acschembio.9b00803] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Some marine bacteria synthesize docosahexaenoic acid (DHA; C22) and eicosapentaenoic acid (EPA; C20) by enzyme complexes composed of four subunits (A-D). We recently revealed that β-ketoacyl synthase (KSC)/chain length factor (CLF)-like domains in the "C" subunit of DHA synthase catalyzed the last elongation step (C20 to C22) even though their amino acid sequences are very similar to those of EPA synthase. To investigate the amino acid residues controlling the product chain length, conserved residues in the KSC/CLF-like domains in DHA synthase were replaced with corresponding EPA synthase residues. Among 12 mutants, two CLF-like domain-mutated genes completely lost DHA productivity and produced trace amounts of EPA when coexpressed with dha-ABD in Escherichia coli, whereas when coexpressed with epa-ABD, they produced the same amounts of EPA as epa-ABCD. These results suggest that the product profiles were subtly controlled by several amino acid residues.
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Affiliation(s)
- Mai Naka
- Graduate School of Chemical Sciences and Engineering, Hokkaido University, N13−W8, Kita-ku, Sapporo 060-8628, Japan
| | - Kenshin Ikeuchi
- Graduate School of Chemical Sciences and Engineering, Hokkaido University, N13−W8, Kita-ku, Sapporo 060-8628, Japan
| | - Shohei Hayashi
- Graduate School of Chemical Sciences and Engineering, Hokkaido University, N13−W8, Kita-ku, Sapporo 060-8628, Japan
| | - Yasuharu Satoh
- Graduate School of Engineering, Hokkaido University, N13−W8, Kita-ku, Sapporo 060-8628, Japan
| | - Yasushi Ogasawara
- Graduate School of Engineering, Hokkaido University, N13−W8, Kita-ku, Sapporo 060-8628, Japan
| | - Tohru Dairi
- Graduate School of Engineering, Hokkaido University, N13−W8, Kita-ku, Sapporo 060-8628, Japan
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16
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Hayashi S, Naka M, Ikeuchi K, Ohtsuka M, Kobayashi K, Satoh Y, Ogasawara Y, Maruyama C, Hamano Y, Ujihara T, Dairi T. Control Mechanism for Carbon‐Chain Length in Polyunsaturated Fatty‐Acid Synthases. Angew Chem Int Ed Engl 2019; 58:6605-6610. [DOI: 10.1002/anie.201900771] [Citation(s) in RCA: 25] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2019] [Revised: 02/19/2019] [Indexed: 11/10/2022]
Affiliation(s)
- Shohei Hayashi
- Graduate School of Chemical Sciences and EngineeringHokkaido University Sapporo 060-8628 Japan
| | - Mai Naka
- Graduate School of Chemical Sciences and EngineeringHokkaido University Sapporo 060-8628 Japan
| | - Kenshin Ikeuchi
- Graduate School of Chemical Sciences and EngineeringHokkaido University Sapporo 060-8628 Japan
| | - Makoto Ohtsuka
- Graduate School of Chemical Sciences and EngineeringHokkaido University Sapporo 060-8628 Japan
| | - Kota Kobayashi
- Graduate School of Chemical Sciences and EngineeringHokkaido University Sapporo 060-8628 Japan
| | - Yasuharu Satoh
- Graduate School of EngineeringHokkaido University N13-W8, Kita-ku Sapporo 060-8628 Japan
| | - Yasushi Ogasawara
- Graduate School of EngineeringHokkaido University N13-W8, Kita-ku Sapporo 060-8628 Japan
| | - Chitose Maruyama
- Department of BioscienceFukui Prefectural University Fukui 910-1195 Japan
| | - Yoshimitsu Hamano
- Department of BioscienceFukui Prefectural University Fukui 910-1195 Japan
| | - Tetsuro Ujihara
- Kyowa Hakko Bio Co. Ltd. 1-6-1, Ohtemachi, Chiyoda-ku Tokyo 100-8185 Japan
| | - Tohru Dairi
- Graduate School of EngineeringHokkaido University N13-W8, Kita-ku Sapporo 060-8628 Japan
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17
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Hayashi S, Naka M, Ikeuchi K, Ohtsuka M, Kobayashi K, Satoh Y, Ogasawara Y, Maruyama C, Hamano Y, Ujihara T, Dairi T. Control Mechanism for Carbon‐Chain Length in Polyunsaturated Fatty‐Acid Synthases. Angew Chem Int Ed Engl 2019. [DOI: 10.1002/ange.201900771] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Shohei Hayashi
- Graduate School of Chemical Sciences and EngineeringHokkaido University Sapporo 060-8628 Japan
| | - Mai Naka
- Graduate School of Chemical Sciences and EngineeringHokkaido University Sapporo 060-8628 Japan
| | - Kenshin Ikeuchi
- Graduate School of Chemical Sciences and EngineeringHokkaido University Sapporo 060-8628 Japan
| | - Makoto Ohtsuka
- Graduate School of Chemical Sciences and EngineeringHokkaido University Sapporo 060-8628 Japan
| | - Kota Kobayashi
- Graduate School of Chemical Sciences and EngineeringHokkaido University Sapporo 060-8628 Japan
| | - Yasuharu Satoh
- Graduate School of EngineeringHokkaido University N13-W8, Kita-ku Sapporo 060-8628 Japan
| | - Yasushi Ogasawara
- Graduate School of EngineeringHokkaido University N13-W8, Kita-ku Sapporo 060-8628 Japan
| | - Chitose Maruyama
- Department of BioscienceFukui Prefectural University Fukui 910-1195 Japan
| | - Yoshimitsu Hamano
- Department of BioscienceFukui Prefectural University Fukui 910-1195 Japan
| | - Tetsuro Ujihara
- Kyowa Hakko Bio Co. Ltd. 1-6-1, Ohtemachi, Chiyoda-ku Tokyo 100-8185 Japan
| | - Tohru Dairi
- Graduate School of EngineeringHokkaido University N13-W8, Kita-ku Sapporo 060-8628 Japan
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18
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Wei W, Jin Q, Wang X. Human milk fat substitutes: Past achievements and current trends. Prog Lipid Res 2019; 74:69-86. [DOI: 10.1016/j.plipres.2019.02.001] [Citation(s) in RCA: 76] [Impact Index Per Article: 15.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2018] [Revised: 02/01/2019] [Accepted: 02/19/2019] [Indexed: 01/16/2023]
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19
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Johnson JM, Ludwig A, Furch ACU, Mithöfer A, Scholz S, Reichelt M, Oelmüller R. The Beneficial Root-Colonizing Fungus Mortierella hyalina Promotes the Aerial Growth of Arabidopsis and Activates Calcium-Dependent Responses That Restrict Alternaria brassicae-Induced Disease Development in Roots. MOLECULAR PLANT-MICROBE INTERACTIONS : MPMI 2019; 32:351-363. [PMID: 30252617 DOI: 10.1094/mpmi-05-18-0115-r] [Citation(s) in RCA: 32] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/21/2023]
Abstract
The endophytic fungus Mortierella hyalina colonizes the roots of Arabidopsis thaliana and stimulates growth and biomass production of the aerial parts but not of roots. An exudate fraction from the fungus induces rapid and transient cytoplasmic Ca2+elevation in the roots. The Ca2+ response does not require the well-characterized (co)receptors BAK1, CERK1, and FLS2 for pathogen-associated molecular patterns, and the Ca2+ channels GLR-2.4, GLR-2.5, and GLR-3.3 or the vacuolar TWO PORE CHANNEL1, which might be involved in cytoplasmic Ca2+ elevation. We isolated an ethyl-methane-sulfonate-induced Arabidopsis mutant that is impaired in this Ca2+ response. The roots of the mutant are impaired in M. hyalina-mediated suppression of immune responses after Alternaria brassicae infection, i.e., jasmonate accumulation, generation of reactive oxygen species, as well as the activation of jasmonate-related defense genes. Furthermore, they are more colonized by M. hyalina than wild-type roots. We propose that the mutant gene product is involved in a Ca2+-dependent signaling pathway activated by M. hyalina to suppress immune responses in Arabidopsis roots.
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Affiliation(s)
- Joy Michal Johnson
- 1 Matthias-Schleiden-Institute for Bioinformatics, Genetics and Molecular Botany, Department of Plant Physiology, Friedrich-Schiller-University, Dornburger Str. 159, 07743 Jena, Germany
| | - Anatoli Ludwig
- 1 Matthias-Schleiden-Institute for Bioinformatics, Genetics and Molecular Botany, Department of Plant Physiology, Friedrich-Schiller-University, Dornburger Str. 159, 07743 Jena, Germany
| | - Alexandra C U Furch
- 1 Matthias-Schleiden-Institute for Bioinformatics, Genetics and Molecular Botany, Department of Plant Physiology, Friedrich-Schiller-University, Dornburger Str. 159, 07743 Jena, Germany
| | - Axel Mithöfer
- 2 Department of Bioorganic Chemistry, Max Planck Institute for Chemical Ecology
- 3 Research Group Plant Defense Physiology, Max Planck Institute for Chemical Ecology
| | - Sandra Scholz
- 1 Matthias-Schleiden-Institute for Bioinformatics, Genetics and Molecular Botany, Department of Plant Physiology, Friedrich-Schiller-University, Dornburger Str. 159, 07743 Jena, Germany
| | - Michael Reichelt
- 4 Department of Bioorganic Chemistry, Max Planck Institute for Chemical Ecology, Hans-Knöll-Straße 8, 07745 Jena, Germany
| | - Ralf Oelmüller
- 1 Matthias-Schleiden-Institute for Bioinformatics, Genetics and Molecular Botany, Department of Plant Physiology, Friedrich-Schiller-University, Dornburger Str. 159, 07743 Jena, Germany
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20
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Hayashi S, Satoh Y, Ogasawara Y, Maruyama C, Hamano Y, Ujihara T, Dairi T. Control Mechanism for cis
Double-Bond Formation by Polyunsaturated Fatty-Acid Synthases. Angew Chem Int Ed Engl 2019. [DOI: 10.1002/ange.201812623] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Shohei Hayashi
- Graduate School of Chemical Sciences and Engineering; Hokkaido University; N13-W8, Kita-ku Sapporo 060-8628 Japan
| | - Yasuharu Satoh
- Graduate School of Engineering; Hokkaido University; N13-W8, Kita-ku Sapporo 060-8628 Japan
| | - Yasushi Ogasawara
- Graduate School of Engineering; Hokkaido University; N13-W8, Kita-ku Sapporo 060-8628 Japan
| | - Chitose Maruyama
- Department of Bioscience; Fukui Prefectural University; Fukui 910-1195 Japan
| | - Yoshimitsu Hamano
- Department of Bioscience; Fukui Prefectural University; Fukui 910-1195 Japan
| | - Tetsuro Ujihara
- Kyowa Hakko Bio Co. Ltd.; 1-6-1, Ohtemachi, Chiyoda-ku Tokyo 100-8185 Japan
| | - Tohru Dairi
- Graduate School of Engineering; Hokkaido University; N13-W8, Kita-ku Sapporo 060-8628 Japan
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21
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Hayashi S, Satoh Y, Ogasawara Y, Maruyama C, Hamano Y, Ujihara T, Dairi T. Control Mechanism for cis Double-Bond Formation by Polyunsaturated Fatty-Acid Synthases. Angew Chem Int Ed Engl 2019; 58:2326-2330. [PMID: 30623559 DOI: 10.1002/anie.201812623] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2018] [Revised: 11/30/2018] [Indexed: 11/06/2022]
Abstract
Polyunsaturated fatty acids (PUFAs) such as docosahexaenoic acid (DHA), eicosapentaenoic acid (EPA), and arachidonic acid (ARA) are essential fatty acids for humans. Some microorganisms biosynthesize these PUFAs through PUFA synthases composed of four subunits with multiple catalytic domains. These PUFA synthases each create a specific PUFA without undesirable byproducts, even though the multiple catalytic domains in each large subunit are very similar. However, the detailed biosynthetic pathways and mechanisms for controlling final-product profiles are still obscure. In this study, the FabA-type dehydratase domain (DHFabA ) in the C-subunit and the polyketide synthase-type dehydratase domain (DHPKS ) in the B-subunit of ARA synthase were revealed to be essential for ARA biosynthesis by in vivo gene exchange assays. Furthermore, in vitro analysis with truncated recombinant enzymes and C4 - to C8 -acyl ACP substrates showed that ARA and EPA synthases utilized two types of DH domains, DHPKS and DHFabA , depending on the carbon-chain length, to introduce either saturation or cis double bonds to growing acyl chains.
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Affiliation(s)
- Shohei Hayashi
- Graduate School of Chemical Sciences and Engineering, Hokkaido University, N13-W8, Kita-ku, Sapporo, 060-8628, Japan
| | - Yasuharu Satoh
- Graduate School of Engineering, Hokkaido University, N13-W8, Kita-ku, Sapporo, 060-8628, Japan
| | - Yasushi Ogasawara
- Graduate School of Engineering, Hokkaido University, N13-W8, Kita-ku, Sapporo, 060-8628, Japan
| | - Chitose Maruyama
- Department of Bioscience, Fukui Prefectural University, Fukui, 910-1195, Japan
| | - Yoshimitsu Hamano
- Department of Bioscience, Fukui Prefectural University, Fukui, 910-1195, Japan
| | - Tetsuro Ujihara
- Kyowa Hakko Bio Co. Ltd., 1-6-1, Ohtemachi, Chiyoda-ku, Tokyo, 100-8185, Japan
| | - Tohru Dairi
- Graduate School of Engineering, Hokkaido University, N13-W8, Kita-ku, Sapporo, 060-8628, Japan
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22
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Mamani LDG, Magalhães AI, Ruan Z, Carvalho JCD, Soccol CR. Industrial production, patent landscape, and market trends of arachidonic acid-rich oil of Mortierella alpina. ACTA ACUST UNITED AC 2019. [DOI: 10.1016/j.biori.2019.02.002] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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23
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Rong C, Chen H, Tang X, Gu Z, Zhao J, Zhang H, Chen W, Chen YQ. Characterization and molecular docking of new Δ17 fatty acid desaturase genes from Rhizophagus irregularis and Octopus bimaculoides. RSC Adv 2019; 9:6871-6880. [PMID: 35518462 PMCID: PMC9061052 DOI: 10.1039/c9ra00535h] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2019] [Accepted: 02/19/2019] [Indexed: 01/19/2023] Open
Abstract
Fatty acid desaturases are key enzymes in the biosynthesis of n-3 polyunsaturated fatty acids (PUFAs) via conversion of n-6 polyunsaturates to their n-3 counterparts.
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Affiliation(s)
- Chunchi Rong
- State Key Laboratory of Food Science and Technology
- Jiangnan University
- Wuxi
- P. R. China
- School of Food Science and Technology
| | - Haiqin Chen
- State Key Laboratory of Food Science and Technology
- Jiangnan University
- Wuxi
- P. R. China
- School of Food Science and Technology
| | - Xin Tang
- State Key Laboratory of Food Science and Technology
- Jiangnan University
- Wuxi
- P. R. China
- School of Food Science and Technology
| | - Zhennan Gu
- State Key Laboratory of Food Science and Technology
- Jiangnan University
- Wuxi
- P. R. China
- School of Food Science and Technology
| | - Jianxin Zhao
- State Key Laboratory of Food Science and Technology
- Jiangnan University
- Wuxi
- P. R. China
- School of Food Science and Technology
| | - Hao Zhang
- State Key Laboratory of Food Science and Technology
- Jiangnan University
- Wuxi
- P. R. China
- School of Food Science and Technology
| | - Wei Chen
- State Key Laboratory of Food Science and Technology
- Jiangnan University
- Wuxi
- P. R. China
- School of Food Science and Technology
| | - Yong Q. Chen
- State Key Laboratory of Food Science and Technology
- Jiangnan University
- Wuxi
- P. R. China
- School of Food Science and Technology
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24
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Recent advances in metabolic engineering of Corynebacterium glutamicum for bioproduction of value-added aromatic chemicals and natural products. Appl Microbiol Biotechnol 2018; 102:8685-8705. [DOI: 10.1007/s00253-018-9289-6] [Citation(s) in RCA: 38] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2018] [Revised: 07/30/2018] [Accepted: 07/31/2018] [Indexed: 02/06/2023]
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25
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Tang X, Chen H, Mei T, Ge C, Gu Z, Zhang H, Chen YQ, Chen W. Characterization of an Omega-3 Desaturase From Phytophthora parasitica and Application for Eicosapentaenoic Acid Production in Mortierella alpina. Front Microbiol 2018; 9:1878. [PMID: 30154780 PMCID: PMC6102326 DOI: 10.3389/fmicb.2018.01878] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2018] [Accepted: 07/26/2018] [Indexed: 11/13/2022] Open
Abstract
Omega-3 long-chain polyunsaturated fatty acids (LC-PUFAs) have important therapeutic and nutritional benefits in humans. In the biosynthesis pathways of these LC-PUFAs, omega-3 desaturase plays a critical role. In this study, we report a new omega-3 desaturase (PPD17) from Phytophthora parasitica. This desaturase shares high similarities with the known omega-3 desaturases and was expressed in Saccharomyces cerevisiae for the activity and substrate specificity research. The desaturase has a wide omega-6 fatty acid substrate, containing both 18C and 20C fatty acids, and exhibits a strong activity of delta-17 desaturase but a weak activity of delta-15 desaturase. The new desaturase converted the omega-6 arachidonic acid (AA, C20:4) to EPA (an omega-3 LC-PUFA, C20:5) with a substrate conversion rate of 70%. To obtain a high EPA-producing strain, we transformed PPD17 into Mortierella alpina, an AA-producing filamentous fungus. The EPA content of the total fatty acids in reconstruction strains reached 31.5% and was followed by the fermentation optimization of the EPA yield of up to 1.9 g/L. This research characterized a new omega-3 desaturase and provides a possibility of industrially producing EPA using M. alpina.
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Affiliation(s)
- Xin Tang
- State Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi, China.,School of Food Science and Technology, Jiangnan University, Wuxi, China
| | - Haiqin Chen
- State Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi, China.,School of Food Science and Technology, Jiangnan University, Wuxi, China
| | - Tiantian Mei
- State Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi, China.,School of Food Science and Technology, Jiangnan University, Wuxi, China
| | - Chengfeng Ge
- State Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi, China.,School of Food Science and Technology, Jiangnan University, Wuxi, China
| | - Zhennan Gu
- State Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi, China.,School of Food Science and Technology, Jiangnan University, Wuxi, China
| | - Hao Zhang
- State Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi, China.,School of Food Science and Technology, Jiangnan University, Wuxi, China
| | - Yong Q Chen
- State Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi, China.,School of Food Science and Technology, Jiangnan University, Wuxi, China.,National Engineering Research Center for Functional Food, Jiangnan University, Wuxi, China.,Department of Cancer Biology, Wake Forest School of Medicine, Winston-Salem, NC, United States
| | - Wei Chen
- State Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi, China.,School of Food Science and Technology, Jiangnan University, Wuxi, China.,National Engineering Research Center for Functional Food, Jiangnan University, Wuxi, China.,Beijing Innovation Centre of Food Nutrition and Human Health, Beijing Technology and Business University, Beijing, China
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26
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Polyunsaturated fatty acids in marine bacteria and strategies to enhance their production. Appl Microbiol Biotechnol 2018; 102:5811-5826. [PMID: 29749565 DOI: 10.1007/s00253-018-9063-9] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2018] [Revised: 04/26/2018] [Accepted: 04/30/2018] [Indexed: 10/16/2022]
Abstract
Polyunsaturated fatty acids (PUFAs) play an important role in human diet. Despite the wide-ranging importance and benefits from heart health to brain functions, humans and mammals cannot synthesize PUFAs de novo. The primary sources of PUFA are fish and plants. Due to the increasing concerns associated with food security as well as issues of environmental contaminants in fish oil, there has been considerable interest in the production of polyunsaturated fatty acids from alternative resources which are more sustainable, safer, and economical. For instance, marine bacteria, particularly the genus of Shewanella, Photobacterium, Colwellia, Moritella, Psychromonas, Vibrio, and Alteromonas, are found to be one among the major microbial producers of polyunsaturated fatty acids. Recent developments in the area with a focus on the production of polyunsaturated fatty acids from marine bacteria as well as the metabolic engineering strategies for the improvement of PUFA production are discussed.
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27
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Ge C, Chen H, Mei T, Tang X, Chang L, Gu Z, Zhang H, Chen W, Chen YQ. Application of a ω-3 Desaturase with an Arachidonic Acid Preference to Eicosapentaenoic Acid Production in Mortierella alpina. Front Bioeng Biotechnol 2018; 5:89. [PMID: 29404322 PMCID: PMC5786553 DOI: 10.3389/fbioe.2017.00089] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2017] [Accepted: 12/29/2017] [Indexed: 11/22/2022] Open
Abstract
In the industrial oleaginous fungus Mortierella alpina, the arachidonic acid (AA; C20:4; ω-6) fraction can reach 50% of the total fatty acids (TFAs) in vivo. However, the eicosapentaenoic acid (EPA; C20:5; ω-3) fraction is less than 3% when this fungus is cultivated at a low temperature (12°C). Omega-3 fatty acid desaturase is a key enzyme in ω-3 long-chain polyunsaturated fatty acids biosynthesis pathways. To enhance EPA production, we transformed the ω-3 fatty acid desaturase (PaD17), which exhibits strong Δ-17 desaturase activity, into M. alpina, thus increasing the AA to EPA conversion rate to 49.8%. This PaD17-harboring M. alpina reconstruction strain produced 617 mg L−1 of EPA at room temperature in broth medium, this yield was increased to 1.73 g L−1 after culture medium optimization (i.e., about threefold higher than that under original culture conditions), with concomitant respective increases in dry cell weight and TFA content to 16.55 and 6.46 g L−1. These findings suggest a new platform for the future industrial production of EPA.
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Affiliation(s)
- Chengfeng Ge
- State Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi, China.,School of Food Science and Technology, Jiangnan University, Wuxi, China
| | - Haiqin Chen
- State Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi, China.,School of Food Science and Technology, Jiangnan University, Wuxi, China
| | - Tiantian Mei
- State Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi, China.,School of Food Science and Technology, Jiangnan University, Wuxi, China
| | - Xin Tang
- State Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi, China.,School of Food Science and Technology, Jiangnan University, Wuxi, China
| | - Lulu Chang
- State Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi, China.,School of Food Science and Technology, Jiangnan University, Wuxi, China
| | - Zhennan Gu
- State Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi, China.,School of Food Science and Technology, Jiangnan University, Wuxi, China
| | - Hao Zhang
- State Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi, China.,School of Food Science and Technology, Jiangnan University, Wuxi, China
| | - Wei Chen
- State Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi, China.,School of Food Science and Technology, Jiangnan University, Wuxi, China.,National Engineering Research Center for Functional Food, Jiangnan University, Wuxi, China.,Beijing Innovation Centre of Food Nutrition and Human Health, Beijing Technology and Business University (BTBU), Beijing, China
| | - Yong Q Chen
- State Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi, China.,School of Food Science and Technology, Jiangnan University, Wuxi, China.,Beijing Innovation Centre of Food Nutrition and Human Health, Beijing Technology and Business University (BTBU), Beijing, China.,Department of Cancer Biology, Wake Forest School of Medicine, Winston-Salem, NC, United States
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28
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Tang X, Chen H, Ge C, Dong S, Si S, Liu J, Gu Z, Zhang H, Chen YQ, Chen W. Application of high EPA-producing Mortierella alpina in laying hen feed for egg DHA accumulation. RSC Adv 2018; 8:39005-39012. [PMID: 35558321 PMCID: PMC9090661 DOI: 10.1039/c8ra06525j] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2018] [Accepted: 11/08/2018] [Indexed: 11/24/2022] Open
Abstract
Polyunsaturated fatty acids (PUFAs), especially eicosapentaenoic acid (EPA, C20:5) and docosahexaenoic acid (DHA, C22:6), are beneficial for human health. In this study, we selected a high EPA content (30% in total fatty acids) strain of Mortierella alpina CCFM 698 that overexpressed an ω-3 fatty acid desaturase from Phytophthora parasitica, and investigated the cell growth and lipid accumulation of this strain in a 65 L airlift fermenter with glucose batch feeding. The maximum cell dry weight was 28.7 g L−1 and the highest total fatty acid content was 33.0% (w/w) in cell dry weight. The highest EPA yield was 1.8 g L−1. Both low and high dose supplementation of this strain into the feed of laying hens increased DHA accumulation in the yolk. The highest DHA content of 7.61 mg g−1 yolk was achieved in Fengda-1 laying hens with 4% supplementation and the DHA production per egg was 118.46 mg. However, Hy-Line Brown laying hens displayed a higher DHA production per egg and the value was 131.50, 131.72, 131.95 mg with 1.5%, 2%, 4% supplementation, respectively. The lowest ratio of ω-6/ω-3 PUFAs (3.53) was obtained in Hy-Line Brown laying hens with 4% supplementation. These results suggest that M. alpina CCFM 698 can be used as an alternative source of ω-3 PUFAs in feed to produce nutritious eggs with high DHA content. A high EPA-producing M. alpina was fermented and added to laying hen feed for egg yolk DHA accumulation.![]()
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Affiliation(s)
- Xin Tang
- State Key Laboratory of Food Science and Technology
- Jiangnan University
- Wuxi
- P. R. China
- School of Food Science and Technology
| | - Haiqin Chen
- State Key Laboratory of Food Science and Technology
- Jiangnan University
- Wuxi
- P. R. China
- School of Food Science and Technology
| | - Chengfeng Ge
- State Key Laboratory of Food Science and Technology
- Jiangnan University
- Wuxi
- P. R. China
- School of Food Science and Technology
| | | | | | | | - Zhennan Gu
- State Key Laboratory of Food Science and Technology
- Jiangnan University
- Wuxi
- P. R. China
- School of Food Science and Technology
| | - Hao Zhang
- State Key Laboratory of Food Science and Technology
- Jiangnan University
- Wuxi
- P. R. China
- School of Food Science and Technology
| | - Yong Q. Chen
- State Key Laboratory of Food Science and Technology
- Jiangnan University
- Wuxi
- P. R. China
- School of Food Science and Technology
| | - Wei Chen
- State Key Laboratory of Food Science and Technology
- Jiangnan University
- Wuxi
- P. R. China
- School of Food Science and Technology
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29
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Wakai S, Arazoe T, Ogino C, Kondo A. Future insights in fungal metabolic engineering. BIORESOURCE TECHNOLOGY 2017; 245:1314-1326. [PMID: 28483354 DOI: 10.1016/j.biortech.2017.04.095] [Citation(s) in RCA: 38] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/31/2017] [Accepted: 04/24/2017] [Indexed: 06/07/2023]
Abstract
Filamentous fungi exhibit versatile abilities, including organic acid fermentation, protein production, and secondary metabolism, amongst others, and thus have applications in the medical and food industries. Previous genomic analyses of several filamentous fungi revealed their further potential as host microorganisms for bioproduction. Recent advancements in molecular genetics, marker recycling, and genome editing could be used to alter transformation and metabolism, based on optimized design carbolated with computer science. In this review, we detail the current applications of filamentous fungi and describe modern molecular genetic tools that could be used to expand the role of these microorganisms in bioproduction. The present review shed light on the possibility of filamentous fungi as host microorganisms in the field of bioproduction in the future.
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Affiliation(s)
- Satoshi Wakai
- Graduate School of Science, Technology, and Innovation, Kobe University, 1-1 Rokkodai-cho, Nada-ku, Kobe, Hyogo 657-8501, Japan
| | - Takayoshi Arazoe
- Graduate School of Science, Technology, and Innovation, Kobe University, 1-1 Rokkodai-cho, Nada-ku, Kobe, Hyogo 657-8501, Japan
| | - Chiaki Ogino
- Department of Chemical Science and Engineering, Graduate School of Engineering, Kobe University, 1-1 Rokkodai-cho, Nada-ku, Kobe, Hyogo 657-8501, Japan
| | - Akihiko Kondo
- Graduate School of Science, Technology, and Innovation, Kobe University, 1-1 Rokkodai-cho, Nada-ku, Kobe, Hyogo 657-8501, Japan; Department of Chemical Science and Engineering, Graduate School of Engineering, Kobe University, 1-1 Rokkodai-cho, Nada-ku, Kobe, Hyogo 657-8501, Japan.
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30
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Sakamoto T, Sakuradani E, Okuda T, Kikukawa H, Ando A, Kishino S, Izumi Y, Bamba T, Shima J, Ogawa J. Metabolic engineering of oleaginous fungus Mortierella alpina for high production of oleic and linoleic acids. BIORESOURCE TECHNOLOGY 2017; 245:1610-1615. [PMID: 28673516 DOI: 10.1016/j.biortech.2017.06.089] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/23/2017] [Revised: 06/15/2017] [Accepted: 06/16/2017] [Indexed: 06/07/2023]
Abstract
The aim of this work was to study the molecular breeding of oleaginous filamentous Mortierella alpina for high production of linoleic (LA) or oleic acid (OA). Heterologous expression of the Δ12-desaturase (DS) gene derived from Coprinopsis cinerea in the Δ6DS activity-defective mutant of M. alpina increased the LA production rate as to total fatty acid to 5 times that in the wild strain. By suppressing the endogenous Δ6I gene expression by RNAi in the Δ12DS activity-defective mutant of M. alpina, the OA accumulation rate as to total fatty acid reached 68.0%. The production of LA and OA in these transformants reached 1.44 and 2.76g/L, respectively, on the 5th day. The Δ6I transcriptional levels of the RNAi-treated strains were suppressed to 1/10th that in the parent strain. The amount of Δ6II RNA in the Δ6I RNAi-treated strain increased to 8 times that in the wild strain.
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Affiliation(s)
- Takaiku Sakamoto
- Graduate School of Bioscience and Bioindustry, Tokushima University, 2-1 Minamijosanjima-cho, Tokushima 770-8513, Japan
| | - Eiji Sakuradani
- Graduate School of Bioscience and Bioindustry, Tokushima University, 2-1 Minamijosanjima-cho, Tokushima 770-8513, Japan.
| | - Tomoyo Okuda
- Graduate School of Agriculture, Kyoto University, Kitashirakawa Oiwake-cho, Sakyo-ku, Kyoto 606-8502, Japan
| | - Hiroshi Kikukawa
- Faculty of Engineering, Gifu University, 1-1 Yanagido, Gifu 501-1193, Japan
| | - Akinori Ando
- Graduate School of Agriculture, Kyoto University, Kitashirakawa Oiwake-cho, Sakyo-ku, Kyoto 606-8502, Japan
| | - Shigenobu Kishino
- Graduate School of Agriculture, Kyoto University, Kitashirakawa Oiwake-cho, Sakyo-ku, Kyoto 606-8502, Japan
| | - Yoshihiro Izumi
- Medical Institute of Bioregulation, Kyushu University, 3-1-1 Maidashi, Higashi-ku, Fukuoka 812-8582, Japan
| | - Takeshi Bamba
- Medical Institute of Bioregulation, Kyushu University, 3-1-1 Maidashi, Higashi-ku, Fukuoka 812-8582, Japan
| | - Jun Shima
- Faculty of Agriculture, Ryukoku University, 67 Tsukamoto-cho, Fukakusa Fushimi-ku, Kyoto 612-8577, Japan
| | - Jun Ogawa
- Graduate School of Agriculture, Kyoto University, Kitashirakawa Oiwake-cho, Sakyo-ku, Kyoto 606-8502, Japan
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31
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Jeennor S, Veerana M, Anantayanon J, Panchanawaporn S, Chutrakul C, Laoteng K. Diacylglycerol acyltransferase 2 of Mortierella alpina with specificity on long-chain polyunsaturated fatty acids: A potential tool for reconstituting lipids with nutritional value. J Biotechnol 2017; 263:45-51. [DOI: 10.1016/j.jbiotec.2017.10.011] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2017] [Revised: 09/23/2017] [Accepted: 10/16/2017] [Indexed: 01/18/2023]
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32
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Seo MJ, Oh DK. Prostaglandin synthases: Molecular characterization and involvement in prostaglandin biosynthesis. Prog Lipid Res 2017; 66:50-68. [DOI: 10.1016/j.plipres.2017.04.003] [Citation(s) in RCA: 59] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/26/2016] [Revised: 03/30/2017] [Accepted: 04/01/2017] [Indexed: 01/30/2023]
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33
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High-efficiency extracellular release of free fatty acids from Aspergillus oryzae using non-ionic surfactants. J Biotechnol 2017; 248:9-14. [PMID: 28300661 DOI: 10.1016/j.jbiotec.2017.03.002] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2016] [Revised: 02/13/2017] [Accepted: 03/04/2017] [Indexed: 11/21/2022]
Abstract
Free fatty acids (FFAs) are useful for generating biofuel compounds and functional lipids. Microbes are increasingly exploited to produce FFAs via metabolic engineering. However, in many microorganisms, FFAs accumulate in the cytosol, and disrupting cells to extract them is energy intensive. Thus, a simple cost-effective extraction technique must be developed to remove this drawback. We found that FFAs were released from cells of the filamentous fungus Aspergillus oryzae with high efficiency when they were cultured or incubated with non-ionic surfactants such as Triton X-100. The surfactants did not reduce hyphal growth, even at 5% (w/v). When the faaA disruptant was cultured with 1% Triton X-100, more than 80% of the FFAs synthesized de novo were released. When the disruptant cells grown without surfactants were incubated for 1h in 1% Triton X-100 solution, more than 50% of the FFAs synthesized de novo were also released. Other non-ionic surfactants in the same ether series, such as Brij 58, IGEPAL CA-630, and Tergitol NP-40, elicited a similar FFA release. The dry cell weight of total hyphae decreased when grown with 1% Triton X-100. The decrement was 4.9-fold greater than the weight of the released FFAs, implying release of other intracellular compounds. Analysis of the culture supernatant showed that intracellular lactate dehydrogenase was also released, suggesting that FFAs are not released by a specific transporter. Therefore, ether-type non-ionic surfactants probably cause non-specific release of FFAs and other intracellular compounds by increasing cell membrane permeability.
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34
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Balamurugan S, Wang X, Wang HL, An CJ, Li H, Li DW, Yang WD, Liu JS, Li HY. Occurrence of plastidial triacylglycerol synthesis and the potential regulatory role of AGPAT in the model diatom Phaeodactylum tricornutum. BIOTECHNOLOGY FOR BIOFUELS 2017; 10:97. [PMID: 28435443 PMCID: PMC5397801 DOI: 10.1186/s13068-017-0786-0] [Citation(s) in RCA: 39] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/21/2016] [Accepted: 04/11/2017] [Indexed: 05/02/2023]
Abstract
BACKGROUND Microalgae have emerged as a potential feedstock for biofuels and bioactive components. However, lack of microalgal strains with promising triacylglycerol (TAG) content and desirable fatty acid composition have hindered its commercial feasibility. Attempts on lipid overproduction by metabolic engineering remain largely challenging in microalgae. RESULTS In this study, a microalgal 1-acyl-sn-glycerol-3-phosphate acyltransferase designated AGPAT1 was identified in the model diatom Phaeodactylum tricornutum. AGPAT1 contained four conserved acyltransferase motifs I-IV. Subcellular localization prediction and thereafter immuno-electron microscopy revealed the localization of AGPAT1 to plastid membranes. AGPAT1 overexpression significantly altered the primary metabolism, with increased total lipid content but decreased content of total carbohydrates and soluble proteins. Intriguingly, AGPAT1 overexpression coordinated the expression of other key genes such as DGAT2 and GPAT involved in TAG synthesis, and consequently increased TAG content by 1.81-fold with a significant increase in polyunsaturated fatty acids, particularly EPA and DHA. Moreover, besides increased lipid droplets in the cytosol, ultrastructural observation showed a number of TAG-rich plastoglobuli formed in plastids. CONCLUSION The results suggested that AGPAT1 overexpression could elevate TAG biosynthesis and, moreover, revealed the occurrence of plastidial TAG synthesis in the diatom. Overall, our data provide a new insight into microalgal lipid metabolism and candidate target for metabolic engineering.
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Affiliation(s)
- Srinivasan Balamurugan
- Key Laboratory of Eutrophication and Red Tide Prevention of Guangdong Higher Education Institute, College of Life Science and Technology, Jinan University, Guangzhou, 510632 China
| | - Xiang Wang
- Key Laboratory of Eutrophication and Red Tide Prevention of Guangdong Higher Education Institute, College of Life Science and Technology, Jinan University, Guangzhou, 510632 China
| | - Hong-Lei Wang
- Key Laboratory of Eutrophication and Red Tide Prevention of Guangdong Higher Education Institute, College of Life Science and Technology, Jinan University, Guangzhou, 510632 China
| | - Chun-Jing An
- Key Laboratory of Eutrophication and Red Tide Prevention of Guangdong Higher Education Institute, College of Life Science and Technology, Jinan University, Guangzhou, 510632 China
| | - Hui Li
- Key Laboratory of Eutrophication and Red Tide Prevention of Guangdong Higher Education Institute, College of Life Science and Technology, Jinan University, Guangzhou, 510632 China
| | - Da-Wei Li
- Key Laboratory of Eutrophication and Red Tide Prevention of Guangdong Higher Education Institute, College of Life Science and Technology, Jinan University, Guangzhou, 510632 China
| | - Wei-Dong Yang
- Key Laboratory of Eutrophication and Red Tide Prevention of Guangdong Higher Education Institute, College of Life Science and Technology, Jinan University, Guangzhou, 510632 China
| | - Jie-Sheng Liu
- Key Laboratory of Eutrophication and Red Tide Prevention of Guangdong Higher Education Institute, College of Life Science and Technology, Jinan University, Guangzhou, 510632 China
| | - Hong-Ye Li
- Key Laboratory of Eutrophication and Red Tide Prevention of Guangdong Higher Education Institute, College of Life Science and Technology, Jinan University, Guangzhou, 510632 China
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35
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Fu J, Chen T, Lu H, Lin Y, Xie X, Tian H, Zheng C, He D. Enhancement of docosahexaenoic acid production by low-energy ion implantation coupled with screening method based on Sudan black B staining in Schizochytrium sp. BIORESOURCE TECHNOLOGY 2016; 221:405-411. [PMID: 27660991 DOI: 10.1016/j.biortech.2016.09.058] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/26/2016] [Revised: 09/10/2016] [Accepted: 09/12/2016] [Indexed: 05/22/2023]
Abstract
Schizochytrium sp. is a hopeful docosahexaenoic acid (DHA) producing candidate due to its rapid growth rate and high DHA proportion in total lipid content. In this study, low-energy ion implantation was applied to Schizochytrium sp. to induce high DHA-producing mutants. Screening these mutants by Sudan black B staining, a mutant strain S1 which showed a 61% improvement in DHA production than that of the parent strain was successfully selected. Subsequently, parameters of DHA production of mutant strain S1 were optimized in a 500-mL Erlenmeyer flask. Under the optimum fermentation conditions, the production of DHA and the percentage of DHA in total lipid of mutant strain S1 were 6.52g/L and 46.2%, respectively. This study provides an effective breeding strategy for improved DHA production of Schizochytrium sp. through combination of the novel mutagenesis technology, the effective screening method and fermentation optimization.
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Affiliation(s)
- Jie Fu
- College of Food Science and Engineering, Wuhan Polytechnic University, 68 Xuefu South Road, Wuhan, Hubei 430023, PR China
| | - Tao Chen
- Wuhan Institute of Virology, Chinese Academy of Sciences, 44 Xiaohongshan, Wuhan, Hubei 430071, PR China
| | - Hao Lu
- College of Food Science and Engineering, Wuhan Polytechnic University, 68 Xuefu South Road, Wuhan, Hubei 430023, PR China
| | - Yuanfeng Lin
- College of Food Science and Engineering, Wuhan Polytechnic University, 68 Xuefu South Road, Wuhan, Hubei 430023, PR China
| | - Xinlei Xie
- College of Food Science and Engineering, Wuhan Polytechnic University, 68 Xuefu South Road, Wuhan, Hubei 430023, PR China
| | - Hua Tian
- College of Food Science and Engineering, Wuhan Polytechnic University, 68 Xuefu South Road, Wuhan, Hubei 430023, PR China
| | - Cao Zheng
- College of Food Science and Engineering, Wuhan Polytechnic University, 68 Xuefu South Road, Wuhan, Hubei 430023, PR China.
| | - Dongping He
- College of Food Science and Engineering, Wuhan Polytechnic University, 68 Xuefu South Road, Wuhan, Hubei 430023, PR China
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36
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Enhanced production of polyunsaturated fatty acids by enzyme engineering of tandem acyl carrier proteins. Sci Rep 2016; 6:35441. [PMID: 27752094 PMCID: PMC5067506 DOI: 10.1038/srep35441] [Citation(s) in RCA: 44] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2016] [Accepted: 09/29/2016] [Indexed: 11/25/2022] Open
Abstract
In some microorganisms, polyunsaturated fatty acids (PUFAs) are biosynthesized by PUFA synthases characterized by tandem acyl carrier proteins (ACPs) in subunit A. These ACPs were previously shown to be important for PUFA productivity. In this study, we examined their function in more detail. PUFA productivities increased depending on the number of ACPs without profile changes in each subunit A of eukaryotic and prokaryotic PUFA synthases. We also constructed derivative enzymes from subunit A with 5 × ACPs. Enzymes possessing one inactive ACP at any position produced ~30% PUFAs compared with the parental enzyme but unexpectedly had ~250% productivity compared with subunit A with 4 × ACPs. Enzymes constructed by replacing the 3rd ACP with an inactive ACP from another subunit A or ACP-unrelated sequences produced ~100% and ~3% PUFAs compared with the parental 3rd ACP-inactive enzyme, respectively. These results suggest that both the structure and number of ACP domains are important for PUFA productivity.
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Yang S, Zhang H. Enhanced polyunsaturated fatty acids production in Mortierella alpina by SSF and the enrichment in chicken breasts. Food Nutr Res 2016; 60:30842. [PMID: 27745585 PMCID: PMC5065997 DOI: 10.3402/fnr.v60.30842] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/27/2015] [Revised: 08/28/2016] [Accepted: 09/11/2016] [Indexed: 12/14/2022] Open
Abstract
BACKGROUND Distiller's dried grains with solubles (DDGS) and soybean meal were used as the substrates for the production of polyunsaturated fatty acids (PUFA) in solid-state fermentation (SSF) by Mortierella alpine. These fermented products were fed to laying hens. PUFA enrichment from chicken breasts was studied. METHODS The maximum productivity of PUFA was achieved under optimized process condition, including 1% w/w yeast extract as additive, an incubation period of 5 days at 12°C, 10% v/w inoculum level, 75% moisture content, and pH 6.0. The hens were then fed with ration containing soybean DDGS, rapeseed oil, soybean oil, and peanut oil. The control group was fed with basal ration. RESULTS Under the optimal condition, M. alpine produced total fatty acids (TFA) of 182.34 mg/g dry substrate. It has better mycelial growth when soybean meal was added to DDGS (SDDGS). PUFA in fermentation product increased with higher soybean meal content. The addition of 70% soybean meal to DDGS substrate yielded 175.16 mg of TFA, including 2.49 mg eicosapentaenoic acid (EPA) and 5.26 mg docosahexaenoic acid (DHA). The ratios of ω-6/ω-3 found in chicken breasts fat were all lower than that found in control by 36.98, 31.51, 18.15, and 12.63% for SDDGS, rapeseed oil, soybean oil, and peanut oil, respectively. CONCLUSIONS This study identified an optimized SSF process to maximize PUFA productivity by M. alpine as the strain. This PUFA-enriched feed increased the PUFA contents as well as the proportions of ω-6 and ω-3 in chicken breasts and liver.
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Affiliation(s)
- Shengli Yang
- The College of Pharmaceutical Science, Zhejiang University of Technology, Hangzhou, People's Republic of China;
| | - Hui Zhang
- Physical and Chemical Test Center, Zhejiang Institute of Quality Inspection Science, Hangzhou, China;
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Fujita T, Kawashima H, Sakuradani E, Sakamoto T, Ando A, Ogawa J, Shimizu S. Essential fatty acids for oleaginous fungus Mortierella alpina. BIOCATALYSIS AND AGRICULTURAL BIOTECHNOLOGY 2016. [DOI: 10.1016/j.bcab.2016.08.011] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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Tamano K, Miura A. Further increased production of free fatty acids by overexpressing a predicted transketolase gene of the pentose phosphate pathway in Aspergillus oryzae faaA disruptant. Biosci Biotechnol Biochem 2016; 80:1829-35. [DOI: 10.1080/09168451.2016.1162086] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
Abstract
Abstract
Free fatty acids are useful as source materials for the production of biodiesel fuel and various chemicals such as pharmaceuticals and dietary supplements. Previously, we attained a 9.2-fold increase in free fatty acid productivity by disrupting a predicted acyl-CoA synthetase gene (faaA, AO090011000642) in Aspergillus oryzae. In this study, we achieved further increase in the productivity by overexpressing a predicted transketolase gene of the pentose phosphate pathway in the faaA disruptant. The A. oryzae genome is predicted to have three transketolase genes and overexpression of AO090023000345, one of the three genes, resulted in phenotypic change and further increase (corresponding to an increased production of 0.38 mmol/g dry cell weight) in free fatty acids at 1.4-fold compared to the faaA disruptant. Additionally, the biomass of hyphae increased at 1.2-fold by the overexpression. As a result, free fatty acid production yield per liter of liquid culture increased at 1.7-fold by the overexpression.
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Affiliation(s)
- Koichi Tamano
- Bioproduction Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Sapporo, Japan
| | - Ai Miura
- Bioproduction Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Sapporo, Japan
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Kikukawa H, Sakuradani E, Ando A, Okuda T, Shimizu S, Ogawa J. Microbial production of dihomo-γ-linolenic acid by Δ5-desaturase gene-disruptants of Mortierella alpina 1S-4. J Biosci Bioeng 2016; 122:22-6. [DOI: 10.1016/j.jbiosc.2015.12.007] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2015] [Revised: 11/10/2015] [Accepted: 12/09/2015] [Indexed: 11/27/2022]
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Application of a delta-6 desaturase with α-linolenic acid preference on eicosapentaenoic acid production in Mortierella alpina. Microb Cell Fact 2016; 15:117. [PMID: 27364006 PMCID: PMC4929779 DOI: 10.1186/s12934-016-0516-5] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2016] [Accepted: 06/21/2016] [Indexed: 01/17/2023] Open
Abstract
Background Delta-6 desaturase (FADS6) is a key bifunctional enzyme desaturating linoleic acid (LA) or α-linolenic acid (ALA) in the biosynthesis of polyunsaturated fatty acids (PUFAs). In previous work, we analyzed the substrate specificity of two FADS6 enzymes from Mortierella alpina ATCC 32222 (MaFADS6) and Micromonas pusilla CCMP1545 (MpFADS6), which showed preference for LA and ALA, respectively. We also clarified the PUFA profiles in M. alpina, where these lipids were synthesized mainly via the ω6 pathway and rarely via the ω3 pathway and as a result contained low ALA and eicosapentaenoic acid (EPA) levels. Result To enhance EPA production in M. alpina by favoring the ω3 pathway, a plasmid harboring the MpFADS6 gene was constructed and overexpressed in a uracil-auxotrophic strain of M. alpina using the Agrobacterium tumefaciens-mediated transformation (ATMT) method. Our results revealed that the EPA production reached 80.0 ± 15.0 and 90.4 ± 9.7 mg/L in MpFADS6 transformants grown at 28 and at 12 °C, respectively. To raise the level of ALA, free form fatty acid was used as exogenous substrate, which increased the EPA production up to 114.5 ± 12.4 mg/L. To reduce the cost of EPA production in M. alpina, peony seed oil (PSO) and peony seed meal (PSM) were used as source of ALA, and EPA production was improved to 149.3 ± 7.8 and 515.29 ± 32.66 mg/L by supplementing with 0.1 % PSO and 50 g/L PSM, respectively. The EPA yield was further increased to 588.5 ± 29.6 mg/L in a 5-L bioreactor, which resulted in a 26.2-fold increase compared to EPA production in wild-type M. alpina. In this work, we have significantly enhanced EPA production through overexpression of a FADS6 desaturase with preference for ALA, combined with supplementation of its substrate. Conclusion An ALA-preferring FADS6 from M. pusilla CCMP1545 was applied to enhance EPA production in M. alpina. By exogenous addition of peony seed oil or peony seed meal, EPA production was further increased in flasks and fermenters. This research also highlights the value of peony seed meal which can be converted to a high value-added product containing EPA, and as a way to increase the EPA/AA ratio in M. alpina. Electronic supplementary material The online version of this article (doi:10.1186/s12934-016-0516-5) contains supplementary material, which is available to authorized users.
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Yoshida K, Hashimoto M, Hori R, Adachi T, Okuyama H, Orikasa Y, Nagamine T, Shimizu S, Ueno A, Morita N. Bacterial Long-Chain Polyunsaturated Fatty Acids: Their Biosynthetic Genes, Functions, and Practical Use. Mar Drugs 2016; 14:E94. [PMID: 27187420 PMCID: PMC4882568 DOI: 10.3390/md14050094] [Citation(s) in RCA: 63] [Impact Index Per Article: 7.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2016] [Revised: 04/23/2016] [Accepted: 04/29/2016] [Indexed: 02/06/2023] Open
Abstract
The nutritional and pharmaceutical values of long-chain polyunsaturated fatty acids (LC-PUFAs) such as arachidonic, eicosapentaenoic and docosahexaenoic acids have been well recognized. These LC-PUFAs are physiologically important compounds in bacteria and eukaryotes. Although little is known about the biosynthetic mechanisms and functions of LC-PUFAs in bacteria compared to those in higher organisms, a combination of genetic, bioinformatic, and molecular biological approaches to LC-PUFA-producing bacteria and some eukaryotes have revealed the notably diverse organization of the pfa genes encoding a polyunsaturated fatty acid synthase complex (PUFA synthase), the LC-PUFA biosynthetic processes, and tertiary structures of the domains of this enzyme. In bacteria, LC-PUFAs appear to take part in specific functions facilitating individual membrane proteins rather than in the adjustment of the physical fluidity of the whole cell membrane. Very long chain polyunsaturated hydrocarbons (LC-HCs) such as hentriacontanonaene are considered to be closely related to LC-PUFAs in their biosynthesis and function. The possible role of LC-HCs in strictly anaerobic bacteria under aerobic and anaerobic environments and the evolutionary relationships of anaerobic and aerobic bacteria carrying pfa-like genes are also discussed.
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Affiliation(s)
- Kiyohito Yoshida
- Laboratory of Ecological Genetics, Section of Environmental Biology, Faculty of Environmental Earth Science, Hokkaido University, Kita-ku, Sapporo, Hokkaido 060-0810, Japan.
| | - Mikako Hashimoto
- Course in Ecological Genetics, Division of Biosphere Science, Graduate School of Environmental Science, Hokkaido University, Kita-ku, Sapporo, Hokkaido 060-0810, Japan.
| | - Ryuji Hori
- Technical Solution Center First Group, J-OIL MILLS, Inc., Chuo-ku, Tokyo 104-0044, Japan.
| | - Takumi Adachi
- Laboratory of Environmental Microbiology, Division of Applied Bioscience, Graduate School of Agriculture, Hokkaido University, Kita-ku, Sapporo, Hokkaido 060-8589, Japan.
- Bioproduction Research Institute, Department of Life Science and Biotechnology, National Institute of Advanced Industrial Science and Technology (AIST), Toyohira-ku, Sapporo, Hokkaido 062-8517, Japan.
| | - Hidetoshi Okuyama
- Laboratory of Environmental Molecular Biology, Section of Environmental Biology, Faculty of Environmental Earth Science, Hokkaido University, Kita-ku, Sapporo, Hokkaido 060-0810, Japan.
| | - Yoshitake Orikasa
- Department Food Science, Obihiro University Agriculture Veterinary Medicine, Inada-cho, Obihiro, Hokkaido 080-8555, Japan.
| | - Tadashi Nagamine
- ROM Co. Ltd., Togashi Bld., Chuo-ku, Sapporo, Hokkaido 060-0062, Japan.
| | - Satoru Shimizu
- Horonobe Research Institute for the Subsurface Environment, Northern Advancement Centre for Science and Technology, 5-3, Sakae-machi, Horonobe, Teshio-gun, Hokkaido 098-3221, Japan.
| | - Akio Ueno
- Horonobe Research Institute for the Subsurface Environment, Northern Advancement Centre for Science and Technology, 5-3, Sakae-machi, Horonobe, Teshio-gun, Hokkaido 098-3221, Japan.
| | - Naoki Morita
- Laboratory of Environmental Microbiology, Division of Applied Bioscience, Graduate School of Agriculture, Hokkaido University, Kita-ku, Sapporo, Hokkaido 060-8589, Japan.
- Bioproduction Research Institute, Department of Life Science and Biotechnology, National Institute of Advanced Industrial Science and Technology (AIST), Toyohira-ku, Sapporo, Hokkaido 062-8517, Japan.
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Arachidonic Acid Synthesis in Mortierella alpina: Origin, Evolution and Advancements. ACTA ACUST UNITED AC 2016. [DOI: 10.1007/s40011-016-0714-2] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
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44
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Microbial oils as food additives: recent approaches for improving microbial oil production and its polyunsaturated fatty acid content. Curr Opin Biotechnol 2016; 37:24-35. [DOI: 10.1016/j.copbio.2015.09.005] [Citation(s) in RCA: 211] [Impact Index Per Article: 26.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2015] [Revised: 09/07/2015] [Accepted: 09/11/2015] [Indexed: 12/13/2022]
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Papp T, Nyilasi I, Csernetics Á, Nagy G, Takó M, Vágvölgyi C. Improvement of Industrially Relevant Biological Activities in Mucoromycotina Fungi. Fungal Biol 2016. [DOI: 10.1007/978-3-319-27951-0_4] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
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46
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Ledesma-Amaro R, Nicaud JM. Yarrowia lipolytica as a biotechnological chassis to produce usual and unusual fatty acids. Prog Lipid Res 2016; 61:40-50. [DOI: 10.1016/j.plipres.2015.12.001] [Citation(s) in RCA: 165] [Impact Index Per Article: 20.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2015] [Revised: 12/02/2015] [Accepted: 12/08/2015] [Indexed: 10/22/2022]
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Metabolic engineering Corynebacterium glutamicum to produce triacylglycerols. Metab Eng 2015; 33:86-97. [PMID: 26645801 DOI: 10.1016/j.ymben.2015.11.002] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2015] [Revised: 10/04/2015] [Accepted: 11/17/2015] [Indexed: 01/09/2023]
Abstract
In this study, we metabolically engineered Corynebacterium glutamicum to produce triacylglycerols (TAGs) by completing and constraining a de novo TAG biosynthesis pathway. First, the plasmid pZ8_TAG4 was constructed which allows the heterologous expression of four genes: three (atf1 and atf2, encoding the diacylglycerol acyltransferase; pgpB, encoding the phosphatidic acid phosphatase) to complete the TAG biosynthesis pathway, and one gene (tadA) for lipid body assembly. Second, we applied four metabolic strategies to increase TAGs accumulation: (i) boosting precursor supply by heterologous expression of tesA (encoding thioesterase to form free fatty acid to reduce the feedback inhibition by acyl-ACP) and fadD (encoding acyl-CoA synthetase to enhance acyl-CoA supply), (ii) reduction of TAG degradation and precursor consumption by deleting four cellular lipases (cg0109, cg0110, cg1676 and cg1320) and the diacylglycerol kinase (cg2849), (iii) enhancement of fatty acid biosynthesis by deletion of fasR (cg2737, TetR-type transcriptional regulator of genes for the fatty acid biosynthesis), and (iv) elimination of the observed by-product formation of organic acids by blocking the acetic acid (pqo) and lactic acid production (ldh) pathways. The final strain (CgTesRtcEfasEbp/pZ8_TAG4) achieved a 7.5% yield of total fatty acids (2.38 ± 0.05 g/L intracellular fatty acids and 0.64 ± 0.09 g/L extracellular fatty acids) from 4% glucose in shake flasks after process optimization. This corresponds to maximum intracellular fatty acids content of 17.8 ± 0.5% of the dry cell.
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Omega-3 eicosatetraenoic acid production by molecular breeding of the mutant strain S14 derived from Mortierella alpina 1S-4. J Biosci Bioeng 2015; 120:299-304. [DOI: 10.1016/j.jbiosc.2015.01.014] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2014] [Revised: 01/09/2015] [Accepted: 01/16/2015] [Indexed: 12/16/2022]
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Okuda T, Ando A, Negoro H, Muratsubaki T, Kikukawa H, Sakamoto T, Sakuradani E, Shimizu S, Ogawa J. Eicosapentaenoic acid (EPA) production by an oleaginous fungusMortierella alpinaexpressing heterologous the Δ17-desaturase gene under ordinary temperature. EUR J LIPID SCI TECH 2015. [DOI: 10.1002/ejlt.201400657] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Tomoyo Okuda
- Division of Applied Life Science; Graduate School of Agriculture; Kyoto University; Kitashirakawa-oiwakecho; Sakyo-ku Kyoto Japan
| | - Akinori Ando
- Division of Applied Life Science; Graduate School of Agriculture; Kyoto University; Kitashirakawa-oiwakecho; Sakyo-ku Kyoto Japan
- Research Unit for the Physiological Chemistry; Kyoto University; Kitashirakawa-oiwakecho; Sakyo-ku Kyoto Japan
| | - Hiroaki Negoro
- Division of Applied Life Science; Graduate School of Agriculture; Kyoto University; Kitashirakawa-oiwakecho; Sakyo-ku Kyoto Japan
| | - Tatsuya Muratsubaki
- Division of Applied Life Science; Graduate School of Agriculture; Kyoto University; Kitashirakawa-oiwakecho; Sakyo-ku Kyoto Japan
| | - Hiroshi Kikukawa
- Division of Applied Life Science; Graduate School of Agriculture; Kyoto University; Kitashirakawa-oiwakecho; Sakyo-ku Kyoto Japan
| | - Takaiku Sakamoto
- Division of Applied Life Science; Graduate School of Agriculture; Kyoto University; Kitashirakawa-oiwakecho; Sakyo-ku Kyoto Japan
| | - Eiji Sakuradani
- Division of Applied Life Science; Graduate School of Agriculture; Kyoto University; Kitashirakawa-oiwakecho; Sakyo-ku Kyoto Japan
- Institute of Technology and Science; The University of Tokushima; Tokushima Japan
| | - Sakayu Shimizu
- Division of Applied Life Science; Graduate School of Agriculture; Kyoto University; Kitashirakawa-oiwakecho; Sakyo-ku Kyoto Japan
- Department of Bioscience and Biotechnology; Faculty of Bioenvironmental Science; Kyoto Gakuen University; Sogabe-cho; Kameoka Kyoto Japan
| | - Jun Ogawa
- Division of Applied Life Science; Graduate School of Agriculture; Kyoto University; Kitashirakawa-oiwakecho; Sakyo-ku Kyoto Japan
- Research Unit for the Physiological Chemistry; Kyoto University; Kitashirakawa-oiwakecho; Sakyo-ku Kyoto Japan
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Kikukawa H, Sakuradani E, Ando A, Okuda T, Ochiai M, Shimizu S, Ogawa J. Disruption of lig4 improves gene targeting efficiency in the oleaginous fungus Mortierella alpina 1S-4. J Biotechnol 2015; 208:63-9. [PMID: 26052021 DOI: 10.1016/j.jbiotec.2015.05.020] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2015] [Revised: 05/19/2015] [Accepted: 05/29/2015] [Indexed: 11/28/2022]
Abstract
The oil-producing zygomycete Mortierella alpina 1S-4 is known to accumulate beneficial polyunsaturated fatty acids. We identified the lig4 gene that encodes for a DNA ligase 4 homolog, which functions to repair double strand breaks by non-homologous end joining. We disrupted the lig4 gene to improve the gene targeting efficiency in M. alpina. The M. alpina 1S-4 Δlig4 strains showed no defect in vegetative growth, formation of spores, and fatty acid production, but exhibited high sensitivity to methyl methansulfonate, an agent that causes DNA double-strand breaks. Importantly, gene replacement of ura5 marker by CBXB marker occurred in 67% of Δlig4 strains and the gene targeting efficiency was 21-fold greater than that observed in disruption of the lig4 gene in the M. alpina 1S-4 host strain. Further metabolic engineering of the Δlig4 strains is expected to result in strains that produce higher levels of rare and beneficial polyunsaturated fatty acids and contribute to basic research on the zygomycete.
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Affiliation(s)
- Hiroshi Kikukawa
- Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Kitashirakawa-Oiwakecho, Sakyo-ku, Kyoto 606-8502, Japan
| | - Eiji Sakuradani
- Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Kitashirakawa-Oiwakecho, Sakyo-ku, Kyoto 606-8502, Japan; Institute of Technology and Science, Tokushima University, 2-1 Minami-Josanjima, Tokushima 770-8506, Japan
| | - Akinori Ando
- Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Kitashirakawa-Oiwakecho, Sakyo-ku, Kyoto 606-8502, Japan; Research Unit for Physiological Chemistry, Kyoto University, Kitashirakawa-Oiwakecho, Sakyo-ku, Kyoto 606-8502, Japan
| | - Tomoyo Okuda
- Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Kitashirakawa-Oiwakecho, Sakyo-ku, Kyoto 606-8502, Japan
| | - Misa Ochiai
- Research Institute, Suntory Global Innovation Center Ltd., 1-1-1 Wakayamadai, Shimamoto-cho, Mishima-gun, Osaka 618-8503, Japan
| | - Sakayu Shimizu
- Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Kitashirakawa-Oiwakecho, Sakyo-ku, Kyoto 606-8502, Japan; Department of Bioscience and Biotechnology, Faculty of Bioenvironmental Science, Kyoto Gakuen University, 1-1 Nanjo, Sogabe, Kameoka 621-8555, Japan
| | - Jun Ogawa
- Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Kitashirakawa-Oiwakecho, Sakyo-ku, Kyoto 606-8502, Japan; Research Unit for Physiological Chemistry, Kyoto University, Kitashirakawa-Oiwakecho, Sakyo-ku, Kyoto 606-8502, Japan.
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