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For: Du C, Fefelova N, Caronna J, He L, Dooner HK. The polychromatic Helitron landscape of the maize genome. Proc Natl Acad Sci U S A 2009;106:19916-21. [PMID: 19926866 DOI: 10.1073/pnas.0904742106] [Citation(s) in RCA: 76] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]  Open
Number Cited by Other Article(s)
1
Uncu AT, Patat AS, Uncu AO. Whole-genome sequencing and identification of antimicrobial peptide coding genes in parsley (Petroselinum crispum), an important culinary and medicinal Apiaceae species. Funct Integr Genomics 2024;24:142. [PMID: 39187716 DOI: 10.1007/s10142-024-01423-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2024] [Revised: 08/09/2024] [Accepted: 08/14/2024] [Indexed: 08/28/2024]
2
Barro-Trastoy D, Köhler C. Helitrons: genomic parasites that generate developmental novelties. Trends Genet 2024;40:437-448. [PMID: 38429198 DOI: 10.1016/j.tig.2024.02.002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2023] [Revised: 02/03/2024] [Accepted: 02/05/2024] [Indexed: 03/03/2024]
3
Gao D. Introduction of Plant Transposon Annotation for Beginners. BIOLOGY 2023;12:1468. [PMID: 38132293 PMCID: PMC10741241 DOI: 10.3390/biology12121468] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/07/2023] [Revised: 11/21/2023] [Accepted: 11/23/2023] [Indexed: 12/23/2023]
4
Inoue Y, Takeda H. Teratorn and its relatives - a cross-point of distinct mobile elements, transposons and viruses. Front Vet Sci 2023;10:1158023. [PMID: 37187934 PMCID: PMC10175614 DOI: 10.3389/fvets.2023.1158023] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2023] [Accepted: 04/10/2023] [Indexed: 05/17/2023]  Open
5
Li C, Cong C, Liu F, Yu Q, Zhan Y, Zhu L, Li Y. Abundance of Transgene Transcript Variants Associated with Somatically Active Transgenic Helitrons from Multiple T-DNA Integration Sites in Maize. Int J Mol Sci 2023;24:ijms24076574. [PMID: 37047545 PMCID: PMC10095026 DOI: 10.3390/ijms24076574] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2023] [Revised: 03/27/2023] [Accepted: 03/28/2023] [Indexed: 04/05/2023]  Open
6
Pegler JL, Oultram JMJ, Mann CWG, Carroll BJ, Grof CPL, Eamens AL. Miniature Inverted-Repeat Transposable Elements: Small DNA Transposons That Have Contributed to Plant MICRORNA Gene Evolution. PLANTS (BASEL, SWITZERLAND) 2023;12:1101. [PMID: 36903960 PMCID: PMC10004981 DOI: 10.3390/plants12051101] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/06/2023] [Revised: 02/23/2023] [Accepted: 02/24/2023] [Indexed: 06/18/2023]
7
Construction and characterization of a de novo draft genome of garden cress (Lepidium sativum L.). Funct Integr Genomics 2022;22:879-889. [PMID: 35596045 DOI: 10.1007/s10142-022-00866-4] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2022] [Accepted: 05/11/2022] [Indexed: 11/04/2022]
8
Gisby JS, Catoni M. The widespread nature of Pack-TYPE transposons reveals their importance for plant genome evolution. PLoS Genet 2022;18:e1010078. [PMID: 35202390 PMCID: PMC8903248 DOI: 10.1371/journal.pgen.1010078] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2021] [Revised: 03/08/2022] [Accepted: 02/06/2022] [Indexed: 11/29/2022]  Open
9
Zhang L, Zhu X, Zhao Y, Guo J, Zhang T, Huang W, Huang J, Hu Y, Huang CH, Ma H. Phylotranscriptomics Resolves the Phylogeny of Pooideae and Uncovers Factors for Their Adaptive Evolution. Mol Biol Evol 2022;39:6521033. [PMID: 35134207 PMCID: PMC8844509 DOI: 10.1093/molbev/msac026] [Citation(s) in RCA: 29] [Impact Index Per Article: 14.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]  Open
10
Wang Z, Zhao G, Yang Q, Gao L, Liu C, Ru Z, Wang D, Jia J, Cui D. Helitron and CACTA DNA transposons actively reshape the common bread wheat - AK58 genome. Genomics 2022;114:110288. [DOI: 10.1016/j.ygeno.2022.110288] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2021] [Revised: 12/01/2021] [Accepted: 01/31/2022] [Indexed: 11/04/2022]
11
Muyle A, Seymour D, Darzentas N, Primetis E, Gaut BS, Bousios A. Gene capture by transposable elements leads to epigenetic conflict in maize. MOLECULAR PLANT 2021;14:237-252. [PMID: 33171302 DOI: 10.1016/j.molp.2020.11.003] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/06/2020] [Revised: 10/15/2020] [Accepted: 11/05/2020] [Indexed: 06/11/2023]
12
Borredá C, Pérez-Román E, Ibanez V, Terol J, Talon M. Reprogramming of Retrotransposon Activity during Speciation of the Genus Citrus. Genome Biol Evol 2020;11:3478-3495. [PMID: 31710678 PMCID: PMC7145672 DOI: 10.1093/gbe/evz246] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 11/04/2019] [Indexed: 12/13/2022]  Open
13
Ramekar RV, Sa KJ, Park KC, Park JY, Park KJ, Lee JK. Genetic differentiation of Mutator insertion polymorphisms and association with agronomic traits in waxy and common maize. Genes Genomics 2020;42:631-638. [PMID: 32277363 DOI: 10.1007/s13258-020-00928-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2019] [Accepted: 03/27/2020] [Indexed: 10/24/2022]
14
Anderson SN, Stitzer MC, Brohammer AB, Zhou P, Noshay JM, O'Connor CH, Hirsch CD, Ross-Ibarra J, Hirsch CN, Springer NM. Transposable elements contribute to dynamic genome content in maize. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2019;100:1052-1065. [PMID: 31381222 DOI: 10.1111/tpj.14489] [Citation(s) in RCA: 60] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/08/2019] [Revised: 07/15/2019] [Accepted: 07/26/2019] [Indexed: 05/05/2023]
15
Molecular mapping and candidate gene analysis of the semi-dominant gene Vestigial glume1 in maize. ACTA ACUST UNITED AC 2019. [DOI: 10.1016/j.cj.2019.04.001] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
16
da Costa ZP, Cauz-Santos LA, Ragagnin GT, Van Sluys MA, Dornelas MC, Berges H, de Mello Varani A, Vieira MLC. Transposable element discovery and characterization of LTR-retrotransposon evolutionary lineages in the tropical fruit species Passiflora edulis. Mol Biol Rep 2019;46:6117-6133. [DOI: 10.1007/s11033-019-05047-4] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2019] [Accepted: 08/28/2019] [Indexed: 12/23/2022]
17
Touati R, Oueslati AE, Messaoudi I, Lachiri Z. The Helitron family classification using SVM based on Fourier transform features applied on an unbalanced dataset. Med Biol Eng Comput 2019;57:2289-2304. [PMID: 31422557 DOI: 10.1007/s11517-019-02027-5] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2018] [Accepted: 08/02/2019] [Indexed: 02/07/2023]
18
Ma B, Xin Y, Kuang L, He N. Distribution and Characteristics of Transposable Elements in the Mulberry Genome. THE PLANT GENOME 2019;12:180094. [PMID: 31290922 DOI: 10.3835/plantgenome2018.12.0094] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
19
Han G, Zhang N, Xu J, Jiang H, Ji C, Zhang Z, Song Q, Stanley D, Fang J, Wang J. Characterization of a novel Helitron family in insect genomes: insights into classification, evolution and horizontal transfer. Mob DNA 2019;10:25. [PMID: 31164927 PMCID: PMC6544945 DOI: 10.1186/s13100-019-0165-4] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2019] [Accepted: 04/30/2019] [Indexed: 01/09/2023]  Open
20
Arkhipova IR, Yushenova IA. Giant Transposons in Eukaryotes: Is Bigger Better? Genome Biol Evol 2019;11:906-918. [PMID: 30796812 PMCID: PMC6431247 DOI: 10.1093/gbe/evz041] [Citation(s) in RCA: 34] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 02/22/2019] [Indexed: 12/12/2022]  Open
21
Chromosome conformation capture resolved near complete genome assembly of broomcorn millet. Nat Commun 2019;10:464. [PMID: 30683940 PMCID: PMC6347627 DOI: 10.1038/s41467-018-07876-6] [Citation(s) in RCA: 47] [Impact Index Per Article: 9.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2018] [Accepted: 12/04/2018] [Indexed: 01/27/2023]  Open
22
Ramekar RV, Sa KJ, Park KC, Roy N, Kim NS, Lee JK. Construction of genetic linkage map and identification of QTLs related to agronomic traits in maize using DNA transposon-based markers. BREEDING SCIENCE 2018;68:465-473. [PMID: 30369821 PMCID: PMC6198908 DOI: 10.1270/jsbbs.18017] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/15/2018] [Accepted: 06/14/2018] [Indexed: 06/08/2023]
23
Sahebi M, Hanafi MM, van Wijnen AJ, Rice D, Rafii MY, Azizi P, Osman M, Taheri S, Bakar MFA, Isa MNM, Noor YM. Contribution of transposable elements in the plant's genome. Gene 2018;665:155-166. [PMID: 29684486 DOI: 10.1016/j.gene.2018.04.050] [Citation(s) in RCA: 43] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2017] [Revised: 04/04/2018] [Accepted: 04/18/2018] [Indexed: 12/26/2022]
24
The Functional Impact of Transposable Elements on the Diversity of Plant Genomes. DIVERSITY 2018. [DOI: 10.3390/d10020018] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
25
Cerbin S, Jiang N. Duplication of host genes by transposable elements. Curr Opin Genet Dev 2018;49:63-69. [PMID: 29571044 DOI: 10.1016/j.gde.2018.03.005] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2017] [Revised: 02/07/2018] [Accepted: 03/08/2018] [Indexed: 12/12/2022]
26
Kim NS. The genomes and transposable elements in plants: are they friends or foes? Genes Genomics 2017. [DOI: 10.1007/s13258-017-0522-y] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
27
Xiong W, Dooner HK, Du C. Rolling-circle amplification of centromeric Helitrons in plant genomes. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2016;88:1038-1045. [PMID: 27553634 DOI: 10.1111/tpj.13314] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/30/2016] [Revised: 08/22/2016] [Accepted: 08/23/2016] [Indexed: 06/06/2023]
28
Zhang HH, Li GY, Xiong XM, Han MJ, Dai FY. Horizontal transfer of a novel Helentron in insects. Mol Genet Genomics 2016;292:243-250. [DOI: 10.1007/s00438-016-1270-4] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2016] [Accepted: 11/02/2016] [Indexed: 11/24/2022]
29
Negi P, Rai AN, Suprasanna P. Moving through the Stressed Genome: Emerging Regulatory Roles for Transposons in Plant Stress Response. FRONTIERS IN PLANT SCIENCE 2016;7:1448. [PMID: 27777577 PMCID: PMC5056178 DOI: 10.3389/fpls.2016.01448] [Citation(s) in RCA: 81] [Impact Index Per Article: 10.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/23/2016] [Accepted: 09/12/2016] [Indexed: 05/02/2023]
30
Lehti-Shiu MD, Panchy N, Wang P, Uygun S, Shiu SH. Diversity, expansion, and evolutionary novelty of plant DNA-binding transcription factor families. BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS 2016;1860:3-20. [PMID: 27522016 DOI: 10.1016/j.bbagrm.2016.08.005] [Citation(s) in RCA: 53] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/15/2016] [Revised: 07/21/2016] [Accepted: 08/06/2016] [Indexed: 12/19/2022]
31
Panchy N, Lehti-Shiu M, Shiu SH. Evolution of Gene Duplication in Plants. PLANT PHYSIOLOGY 2016;171:2294-316. [PMID: 27288366 PMCID: PMC4972278 DOI: 10.1104/pp.16.00523] [Citation(s) in RCA: 784] [Impact Index Per Article: 98.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/02/2016] [Accepted: 05/17/2016] [Indexed: 05/18/2023]
32
Helitrons, the Eukaryotic Rolling-circle Transposable Elements. Microbiol Spectr 2016;3. [PMID: 26350323 DOI: 10.1128/microbiolspec.mdna3-0049-2014] [Citation(s) in RCA: 54] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
33
Bousios A, Gaut BS. Mechanistic and evolutionary questions about epigenetic conflicts between transposable elements and their plant hosts. CURRENT OPINION IN PLANT BIOLOGY 2016;30:123-33. [PMID: 26950253 DOI: 10.1016/j.pbi.2016.02.009] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/20/2015] [Revised: 02/16/2016] [Accepted: 02/17/2016] [Indexed: 05/02/2023]
34
A Helitron transposon reconstructed from bats reveals a novel mechanism of genome shuffling in eukaryotes. Nat Commun 2016;7:10716. [PMID: 26931494 PMCID: PMC4778049 DOI: 10.1038/ncomms10716] [Citation(s) in RCA: 69] [Impact Index Per Article: 8.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2015] [Accepted: 01/14/2016] [Indexed: 02/08/2023]  Open
35
Zhao D, Ferguson AA, Jiang N. What makes up plant genomes: The vanishing line between transposable elements and genes. BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS 2015;1859:366-80. [PMID: 26709091 DOI: 10.1016/j.bbagrm.2015.12.005] [Citation(s) in RCA: 48] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/17/2015] [Revised: 12/09/2015] [Accepted: 12/11/2015] [Indexed: 02/07/2023]
36
Xiong W, Du C. Mining hidden polymorphic sequence motifs from divergent plant helitrons. Mob Genet Elements 2015;4:1-5. [PMID: 26442169 PMCID: PMC4588551 DOI: 10.4161/21592543.2014.971635] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2014] [Revised: 09/24/2014] [Accepted: 09/29/2014] [Indexed: 12/02/2022]  Open
37
Differential pre-mRNA Splicing Alters the Transcript Diversity of Helitrons Between the Maize Inbred Lines. G3-GENES GENOMES GENETICS 2015;5:1703-11. [PMID: 26070844 PMCID: PMC4528327 DOI: 10.1534/g3.115.018630] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
38
Hickman AB, Dyda F. Mechanisms of DNA Transposition. Microbiol Spectr 2015;3:MDNA3-0034-2014. [PMID: 26104718 PMCID: PMC7422641 DOI: 10.1128/microbiolspec.mdna3-0034-2014] [Citation(s) in RCA: 69] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2014] [Indexed: 12/15/2022]  Open
39
Law M, Childs KL, Campbell MS, Stein JC, Olson AJ, Holt C, Panchy N, Lei J, Jiao D, Andorf CM, Lawrence CJ, Ware D, Shiu SH, Sun Y, Jiang N, Yandell M. Automated update, revision, and quality control of the maize genome annotations using MAKER-P improves the B73 RefGen_v3 gene models and identifies new genes. PLANT PHYSIOLOGY 2015;167:25-39. [PMID: 25384563 PMCID: PMC4280997 DOI: 10.1104/pp.114.245027] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/19/2014] [Accepted: 11/02/2014] [Indexed: 05/18/2023]
40
Castanera R, Pérez G, López L, Sancho R, Santoyo F, Alfaro M, Gabaldón T, Pisabarro AG, Oguiza JA, Ramírez L. Highly expressed captured genes and cross-kingdom domains present in Helitrons create novel diversity in Pleurotus ostreatus and other fungi. BMC Genomics 2014;15:1071. [PMID: 25480150 PMCID: PMC4289320 DOI: 10.1186/1471-2164-15-1071] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2014] [Accepted: 11/14/2014] [Indexed: 11/10/2022]  Open
41
Lee SI, Kim NS. Transposable elements and genome size variations in plants. Genomics Inform 2014;12:87-97. [PMID: 25317107 PMCID: PMC4196380 DOI: 10.5808/gi.2014.12.3.87] [Citation(s) in RCA: 111] [Impact Index Per Article: 11.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2014] [Revised: 08/18/2014] [Accepted: 08/22/2014] [Indexed: 02/01/2023]  Open
42
Thomas J, Phillips CD, Baker RJ, Pritham EJ. Rolling-circle transposons catalyze genomic innovation in a mammalian lineage. Genome Biol Evol 2014;6:2595-610. [PMID: 25223768 PMCID: PMC4224331 DOI: 10.1093/gbe/evu204] [Citation(s) in RCA: 46] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]  Open
43
Helinoto, a Helitron2 transposon from the icefish Chionodraco hamatus, contains a region with three deubiquitinase-like domains that exhibit transcriptional activity. COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY D-GENOMICS & PROTEOMICS 2014;11:49-58. [PMID: 25178533 DOI: 10.1016/j.cbd.2014.07.004] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/09/2014] [Revised: 07/29/2014] [Accepted: 07/30/2014] [Indexed: 11/24/2022]
44
HelitronScanner uncovers a large overlooked cache of Helitron transposons in many plant genomes. Proc Natl Acad Sci U S A 2014;111:10263-8. [PMID: 24982153 DOI: 10.1073/pnas.1410068111] [Citation(s) in RCA: 160] [Impact Index Per Article: 16.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]  Open
45
Liu Y, Yang G. Tc1-like transposable elements in plant genomes. Mob DNA 2014;5:17. [PMID: 24926322 PMCID: PMC4054914 DOI: 10.1186/1759-8753-5-17] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2014] [Accepted: 05/12/2014] [Indexed: 11/10/2022]  Open
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Evidence of horizontal transfer of non-autonomous Lep1 Helitrons facilitated by host-parasite interactions. Sci Rep 2014;4:5119. [PMID: 24874102 PMCID: PMC4038834 DOI: 10.1038/srep05119] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2014] [Accepted: 05/09/2014] [Indexed: 11/09/2022]  Open
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Oliver KR, McComb JA, Greene WK. Transposable elements: powerful contributors to angiosperm evolution and diversity. Genome Biol Evol 2014;5:1886-901. [PMID: 24065734 PMCID: PMC3814199 DOI: 10.1093/gbe/evt141] [Citation(s) in RCA: 126] [Impact Index Per Article: 12.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]  Open
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New insights into helitron transposable elements in the mesopolyploid species Brassica rapa. Gene 2013;532:236-45. [DOI: 10.1016/j.gene.2013.09.033] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2013] [Revised: 09/03/2013] [Accepted: 09/09/2013] [Indexed: 11/19/2022]
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Li Y, Harris L, Dooner HK. TED, an autonomous and rare maize transposon of the mutator superfamily with a high gametophytic excision frequency. THE PLANT CELL 2013;25:3251-65. [PMID: 24038653 PMCID: PMC3809530 DOI: 10.1105/tpc.113.116517] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/15/2023]
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Han MJ, Shen YH, Xu MS, Liang HY, Zhang HH, Zhang Z. Identification and evolution of the silkworm helitrons and their contribution to transcripts. DNA Res 2013;20:471-84. [PMID: 23771679 PMCID: PMC3789558 DOI: 10.1093/dnares/dst024] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]  Open
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