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For: Cook DL, Gerber AN, Tapscott SJ. Modeling stochastic gene expression: implications for haploinsufficiency. Proc Natl Acad Sci U S A 1998;95:15641-6. [PMID: 9861023 PMCID: PMC28097 DOI: 10.1073/pnas.95.26.15641] [Citation(s) in RCA: 166] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]  Open
Number Cited by Other Article(s)
1
Ikeda S, Sato K, Fujita H, Ono-Minagi H, Miyaishi S, Nohno T, Ohuchi H. Harderian Gland Development and Degeneration in the Fgf10-Deficient Heterozygous Mouse. J Dev Biol 2024;12:16. [PMID: 38921483 PMCID: PMC11205083 DOI: 10.3390/jdb12020016] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2024] [Revised: 05/26/2024] [Accepted: 05/29/2024] [Indexed: 06/27/2024]  Open
2
Martinez TC, McNerney ME. Haploinsufficient Transcription Factors in Myeloid Neoplasms. ANNUAL REVIEW OF PATHOLOGY 2024;19:571-598. [PMID: 37906947 DOI: 10.1146/annurev-pathmechdis-051222-013421] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/02/2023]
3
Lewin LE, Daniels KG, Hurst LD. Genes for highly abundant proteins in Escherichia coli avoid 5' codons that promote ribosomal initiation. PLoS Comput Biol 2023;19:e1011581. [PMID: 37878567 PMCID: PMC10599525 DOI: 10.1371/journal.pcbi.1011581] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2023] [Accepted: 10/09/2023] [Indexed: 10/27/2023]  Open
4
Biondo M, Singh A, Caselle M, Osella M. Out-of-equilibrium gene expression fluctuations in the presence of extrinsic noise. Phys Biol 2023;20:10.1088/1478-3975/acea4e. [PMID: 37489881 PMCID: PMC10680095 DOI: 10.1088/1478-3975/acea4e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2023] [Accepted: 07/25/2023] [Indexed: 07/26/2023]
5
Ramu A, Cohen BA. Transcription factor fluctuations underlie cell-to-cell variability in a signaling pathway response. Genetics 2023;224:iyad094. [PMID: 37226217 PMCID: PMC10691749 DOI: 10.1093/genetics/iyad094] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2023] [Revised: 04/25/2023] [Accepted: 05/05/2023] [Indexed: 05/26/2023]  Open
6
Rukh S, Meechan DW, Maynard TM, Lamantia AS. Out of Line or Altered States? Neural Progenitors as a Target in a Polygenic Neurodevelopmental Disorder. Dev Neurosci 2023;46:1-21. [PMID: 37231803 DOI: 10.1159/000530898] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2023] [Accepted: 04/19/2023] [Indexed: 05/27/2023]  Open
7
Robinson ML, Schilmiller AL, Wetzel WC. A domestic plant differs from its wild relative along multiple axes of within-plant trait variability and diversity. Ecol Evol 2022;12:e8545. [PMID: 35127045 PMCID: PMC8794722 DOI: 10.1002/ece3.8545] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2021] [Revised: 11/28/2021] [Accepted: 12/22/2021] [Indexed: 11/08/2022]  Open
8
Basilicata MF, Keller Valsecchi CI. The good, the bad, and the ugly: Evolutionary and pathological aspects of gene dosage alterations. PLoS Genet 2021;17:e1009906. [PMID: 34882671 PMCID: PMC8659298 DOI: 10.1371/journal.pgen.1009906] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]  Open
9
Hernandez-Hernandez C, Pascual J, Carlo S, Velez-Bartolomei F, Rodriguez E, Santiago Cornier A. Multiple de novo gene variations in a progeroid phenotype case report: haploinsufficiency mechanisms. AME Case Rep 2021;5:40. [PMID: 34805759 DOI: 10.21037/acr-21-25] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2021] [Accepted: 08/13/2021] [Indexed: 11/06/2022]
10
Jang J, Amblard F, Ghim CM. Heterogeneity is not always a source of noise: Stochastic gene expression in regulatory heterozygote. Phys Rev E 2021;104:044401. [PMID: 34781474 DOI: 10.1103/physreve.104.044401] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2020] [Accepted: 09/16/2021] [Indexed: 01/22/2023]
11
Modi S, Dey S, Singh A. Noise suppression in stochastic genetic circuits using PID controllers. PLoS Comput Biol 2021;17:e1009249. [PMID: 34319990 PMCID: PMC8360635 DOI: 10.1371/journal.pcbi.1009249] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2021] [Revised: 08/12/2021] [Accepted: 07/05/2021] [Indexed: 01/01/2023]  Open
12
Maynard TM, Horvath A, Bernot JP, Karpinski BA, Tavares ALP, Shah A, Zheng Q, Spurr L, Olender J, Moody SA, Fraser CM, LaMantia AS, Lee NH. Transcriptional dysregulation in developing trigeminal sensory neurons in the LgDel mouse model of DiGeorge 22q11.2 deletion syndrome. Hum Mol Genet 2021;29:1002-1017. [PMID: 32047912 PMCID: PMC7158380 DOI: 10.1093/hmg/ddaa024] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2019] [Revised: 01/12/2020] [Accepted: 02/04/2020] [Indexed: 12/13/2022]  Open
13
Muyle A, Bachtrog D, Marais GAB, Turner JMA. Epigenetics drive the evolution of sex chromosomes in animals and plants. Philos Trans R Soc Lond B Biol Sci 2021;376:20200124. [PMID: 33866802 DOI: 10.1098/rstb.2020.0124] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]  Open
14
Pirgazi J, Olyaee MH, Khanteymoori A. KFGRNI: A robust method to inference gene regulatory network from time-course gene data based on ensemble Kalman filter. J Bioinform Comput Biol 2021;19:2150002. [PMID: 33657986 DOI: 10.1142/s0219720021500025] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
15
Ashokkumar D, Zhang Q, Much C, Bledau AS, Naumann R, Alexopoulou D, Dahl A, Goveas N, Fu J, Anastassiadis K, Stewart AF, Kranz A. MLL4 is required after implantation, whereas MLL3 becomes essential during late gestation. Development 2020;147:dev186999. [PMID: 32439762 DOI: 10.1242/dev.186999] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2019] [Accepted: 04/24/2020] [Indexed: 12/26/2022]
16
Arai Y, Umeyama K, Okazaki N, Nakano K, Nishino K, Nagashima H, Ohgane J. DNA methylation ambiguity in the Fibrillin-1 (FBN1) CpG island shore possibly involved in Marfan syndrome. Sci Rep 2020;10:5287. [PMID: 32210272 PMCID: PMC7093481 DOI: 10.1038/s41598-020-62127-3] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2019] [Accepted: 03/09/2020] [Indexed: 11/15/2022]  Open
17
Bolt CC, Duboule D. The regulatory landscapes of developmental genes. Development 2020;147:dev171736. [PMID: 32014867 PMCID: PMC7033717 DOI: 10.1242/dev.171736] [Citation(s) in RCA: 28] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
18
Johnson AF, Nguyen HT, Veitia RA. Causes and effects of haploinsufficiency. Biol Rev Camb Philos Soc 2019;94:1774-1785. [DOI: 10.1111/brv.12527] [Citation(s) in RCA: 25] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2019] [Revised: 05/08/2019] [Accepted: 05/10/2019] [Indexed: 12/14/2022]
19
Yang JR, Chen X. Dosage sensitivity of X-linked genes in human embryonic single cells. BMC Genomics 2019;20:42. [PMID: 30642250 PMCID: PMC6332578 DOI: 10.1186/s12864-019-5432-8] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2018] [Accepted: 01/03/2019] [Indexed: 12/28/2022]  Open
20
Do GWAS and studies of heterozygotes for NPC1 and/or NPC2 explain why NPC disease cases are so rare? J Appl Genet 2018;59:441-447. [PMID: 30209687 DOI: 10.1007/s13353-018-0465-2] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2018] [Revised: 08/31/2018] [Accepted: 09/04/2018] [Indexed: 12/15/2022]
21
Dosage-Dependent Expression Variation Suppressed on the Drosophila Male X Chromosome. G3-GENES GENOMES GENETICS 2018;8:587-598. [PMID: 29242386 PMCID: PMC5919722 DOI: 10.1534/g3.117.300400] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
22
Faure AJ, Schmiedel JM, Lehner B. Systematic Analysis of the Determinants of Gene Expression Noise in Embryonic Stem Cells. Cell Syst 2017;5:471-484.e4. [DOI: 10.1016/j.cels.2017.10.003] [Citation(s) in RCA: 47] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2017] [Revised: 06/06/2017] [Accepted: 10/02/2017] [Indexed: 01/23/2023]
23
Veitia RA, Caburet S, Birchler JA. Mechanisms of Mendelian dominance. Clin Genet 2017;93:419-428. [PMID: 28755412 DOI: 10.1111/cge.13107] [Citation(s) in RCA: 61] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2017] [Revised: 07/24/2017] [Accepted: 07/26/2017] [Indexed: 01/12/2023]
24
Hosaka T, Ishii K, Miura T, Mezaki N, Kasuga K, Ikeuchi T, Tamaoka A. A novel frameshift GRN mutation results in frontotemporal lobar degeneration with a distinct clinical phenotype in two siblings: case report and literature review. BMC Neurol 2017;17:182. [PMID: 28915852 PMCID: PMC5603021 DOI: 10.1186/s12883-017-0959-2] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2017] [Accepted: 09/01/2017] [Indexed: 11/13/2022]  Open
25
Arai Y, Umeyama K, Takeuchi K, Okazaki N, Hichiwa N, Yashima S, Nakano K, Nagashima H, Ohgane J. Establishment of DNA methylation patterns of the Fibrillin1 (FBN1) gene in porcine embryos and tissues. J Reprod Dev 2017;63:157-165. [PMID: 28111381 PMCID: PMC5401809 DOI: 10.1262/jrd.2016-158] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]  Open
26
Innocentini GCP, Guiziou S, Bonnet J, Radulescu O. Analytic framework for a stochastic binary biological switch. Phys Rev E 2017;94:062413. [PMID: 28085300 DOI: 10.1103/physreve.94.062413] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2016] [Indexed: 11/07/2022]
27
Macromolecular Crowding Regulates the Gene Expression Profile by Limiting Diffusion. PLoS Comput Biol 2016;12:e1005122. [PMID: 27893768 PMCID: PMC5125560 DOI: 10.1371/journal.pcbi.1005122] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2016] [Accepted: 08/26/2016] [Indexed: 01/24/2023]  Open
28
Reinius B, Mold JE, Ramsköld D, Deng Q, Johnsson P, Michaëlsson J, Frisén J, Sandberg R. Analysis of allelic expression patterns in clonal somatic cells by single-cell RNA-seq. Nat Genet 2016;48:1430-1435. [PMID: 27668657 PMCID: PMC5117254 DOI: 10.1038/ng.3678] [Citation(s) in RCA: 95] [Impact Index Per Article: 11.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2016] [Accepted: 08/29/2016] [Indexed: 12/16/2022]
29
Magne F, Ge B, Larrivée-Vanier S, Van Vliet G, Samuels ME, Pastinen T, Deladoëy J. Demonstration of Autosomal Monoallelic Expression in Thyroid Tissue Assessed by Whole-Exome and Bulk RNA Sequencing. Thyroid 2016;26:852-9. [PMID: 27125219 DOI: 10.1089/thy.2016.0009] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
30
Reinius B, Sandberg R. Random monoallelic expression of autosomal genes: stochastic transcription and allele-level regulation. Nat Rev Genet 2015;16:653-64. [PMID: 26442639 DOI: 10.1038/nrg3888] [Citation(s) in RCA: 124] [Impact Index Per Article: 13.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
31
Soltani M, Bokes P, Fox Z, Singh A. Nonspecific transcription factor binding can reduce noise in the expression of downstream proteins. Phys Biol 2015;12:055002. [DOI: 10.1088/1478-3975/12/5/055002] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
32
Shi C, Wang S, Zhou T, Jiang Y. Post-transcriptional regulation tends to attenuate the mRNA noise and to increase the mRNA gain. Phys Biol 2015;12:056002. [PMID: 26266661 DOI: 10.1088/1478-3975/12/5/056002] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
33
Mineta K, Matsumoto T, Osada N, Araki H. Population genetics of non-genetic traits: Evolutionary roles of stochasticity in gene expression. Gene 2015;562:16-21. [DOI: 10.1016/j.gene.2015.03.011] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2014] [Revised: 12/09/2014] [Accepted: 03/04/2015] [Indexed: 01/04/2023]
34
Veitia RA, Veyrunes F, Bottani S, Birchler JA. X chromosome inactivation and active X upregulation in therian mammals: facts, questions, and hypotheses. J Mol Cell Biol 2015;7:2-11. [PMID: 25564545 DOI: 10.1093/jmcb/mjv001] [Citation(s) in RCA: 39] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
35
Goreac D. A note on general Tauberian-type results for controlled stochastic dynamics. ELECTRONIC COMMUNICATIONS IN PROBABILITY 2015. [DOI: 10.1214/ecp.v20-4142] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
36
Zhang X, Jin H, Yang Z, Lei J. Effects of elongation delay in transcription dynamics. MATHEMATICAL BIOSCIENCES AND ENGINEERING : MBE 2014;11:1431-1448. [PMID: 25365608 DOI: 10.3934/mbe.2014.11.1431] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
37
Parallel solutions for voxel-based simulations of reaction-diffusion systems. BIOMED RESEARCH INTERNATIONAL 2014;2014:980501. [PMID: 25045716 PMCID: PMC4082941 DOI: 10.1155/2014/980501] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/21/2014] [Revised: 05/12/2014] [Accepted: 05/18/2014] [Indexed: 11/25/2022]
38
Todeschini AL, Georges A, Veitia RA. Transcription factors: specific DNA binding and specific gene regulation. Trends Genet 2014;30:211-9. [PMID: 24774859 DOI: 10.1016/j.tig.2014.04.002] [Citation(s) in RCA: 109] [Impact Index Per Article: 10.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2014] [Revised: 03/26/2014] [Accepted: 04/01/2014] [Indexed: 12/15/2022]
39
Yoshimura H, Takumi Y, Nishio SY, Suzuki N, Iwasa YI, Usami SI. Deafness gene expression patterns in the mouse cochlea found by microarray analysis. PLoS One 2014;9:e92547. [PMID: 24676347 PMCID: PMC3967995 DOI: 10.1371/journal.pone.0092547] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2013] [Accepted: 02/24/2014] [Indexed: 11/19/2022]  Open
40
Germain RN. Open questions: a rose is a rose is a rose--or not? BMC Biol 2014;12:2. [PMID: 24484903 PMCID: PMC3909284 DOI: 10.1186/1741-7007-12-2] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/03/2014] [Indexed: 01/03/2023]  Open
41
DeLaurier A, Huycke TR, Nichols JT, Swartz ME, Larsen A, Walker C, Dowd J, Pan L, Moens CB, Kimmel CB. Role of mef2ca in developmental buffering of the zebrafish larval hyoid dermal skeleton. Dev Biol 2014;385:189-99. [PMID: 24269905 PMCID: PMC3892954 DOI: 10.1016/j.ydbio.2013.11.016] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2013] [Revised: 11/10/2013] [Accepted: 11/12/2013] [Indexed: 11/28/2022]
42
Wang Q, Zhou T. Alternative-splicing-mediated gene expression. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2014;89:012713. [PMID: 24580263 DOI: 10.1103/physreve.89.012713] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/27/2013] [Indexed: 06/03/2023]
43
Singh A, Soltani M. Quantifying intrinsic and extrinsic variability in stochastic gene expression models. PLoS One 2013;8:e84301. [PMID: 24391934 PMCID: PMC3877255 DOI: 10.1371/journal.pone.0084301] [Citation(s) in RCA: 48] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2013] [Accepted: 11/17/2013] [Indexed: 11/19/2022]  Open
44
Jeffries AR, Collier DA, Vassos E, Curran S, Ogilvie CM, Price J. Random or stochastic monoallelic expressed genes are enriched for neurodevelopmental disorder candidate genes. PLoS One 2013;8:e85093. [PMID: 24386451 PMCID: PMC3874034 DOI: 10.1371/journal.pone.0085093] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2013] [Accepted: 11/22/2013] [Indexed: 11/30/2022]  Open
45
Yvert G. 'Particle genetics': treating every cell as unique. Trends Genet 2013;30:49-56. [PMID: 24315431 DOI: 10.1016/j.tig.2013.11.002] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2013] [Revised: 11/06/2013] [Accepted: 11/13/2013] [Indexed: 12/18/2022]
46
Szövényi P, Ricca M, Hock Z, Shaw JA, Shimizu KK, Wagner A. Selection is no more efficient in haploid than in diploid life stages of an angiosperm and a moss. Mol Biol Evol 2013;30:1929-39. [PMID: 23686659 DOI: 10.1093/molbev/mst095] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]  Open
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Singh A, Bokes P. Consequences of mRNA transport on stochastic variability in protein levels. Biophys J 2013;103:1087-96. [PMID: 23009859 DOI: 10.1016/j.bpj.2012.07.015] [Citation(s) in RCA: 49] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2012] [Revised: 07/10/2012] [Accepted: 07/13/2012] [Indexed: 01/22/2023]  Open
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Meinke DW. A survey of dominant mutations in Arabidopsis thaliana. TRENDS IN PLANT SCIENCE 2013;18:84-91. [PMID: 22995285 DOI: 10.1016/j.tplants.2012.08.006] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/11/2012] [Revised: 08/03/2012] [Accepted: 08/13/2012] [Indexed: 06/01/2023]
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Wang L, Wang X, Arkin AP, Samoilov MS. Inference of gene regulatory networks from genome-wide knockout fitness data. Bioinformatics 2012;29:338-46. [PMID: 23271269 PMCID: PMC3562072 DOI: 10.1093/bioinformatics/bts634] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]  Open
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Claus J, Chavarría-Krauser A. Modeling regulation of zinc uptake via ZIP transporters in yeast and plant roots. PLoS One 2012;7:e37193. [PMID: 22715365 PMCID: PMC3371047 DOI: 10.1371/journal.pone.0037193] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2012] [Accepted: 04/18/2012] [Indexed: 12/02/2022]  Open
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