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Schroeter EH, Ilagan MXG, Brunkan AL, Hecimovic S, Li YM, Xu M, Lewis HD, Saxena MT, De Strooper B, Coonrod A, Tomita T, Iwatsubo T, Moore CL, Goate A, Wolfe MS, Shearman M, Kopan R. A presenilin dimer at the core of the gamma-secretase enzyme: insights from parallel analysis of Notch 1 and APP proteolysis. Proc Natl Acad Sci U S A 2003; 100:13075-80. [PMID: 14566063 PMCID: PMC240747 DOI: 10.1073/pnas.1735338100] [Citation(s) in RCA: 159] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Notch receptors and the amyloid precursor protein are type I membrane proteins that are proteolytically cleaved within their transmembrane domains by a presenilin (PS)-dependent gamma-secretase activity. In both proteins, two peptide bonds are hydrolyzed: one near the inner leaflet and the other in the middle of the transmembrane domain. Under saturating conditions the substrates compete with each other for proteolysis, but not for binding to PS. At least some Alzheimer's disease-causing PS mutations reside in proteins possessing low catalytic activity. We demonstrate (i) that differentially tagged PS molecules coimmunoprecipitate, and (ii) that PS N-terminal fragment dimers exist by using a photoaffinity probe based on a transition state analog gamma-secretase inhibitor. We propose that gamma-secretase contains a PS dimer in its catalytic core, that binding of substrate is at a site separate from the active site, and that substrate is cleaved at the interface of two PS molecules.
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Affiliation(s)
- Eric H. Schroeter
- Departments of Molecular Biology and Pharmacology and Psychiatry, Washington University School of Medicine, St. Louis, MO 63110; Department of Biological Chemistry, Merck Research Laboratories, West Point, PA 19486-0004; Department of Neuropathology and Neuroscience, Graduate School of Pharmaceutical Sciences, University of Tokyo, 7-3-1 Hongo Bunkyoku, Tokyo 113-0033, Japan; Department of Biochemistry and Molecular Biology, Merck Sharp and Dohme Research Laboratories, Neuroscience Research Centre, Terlings Park, Harlow, Essex CM20 2QR, United Kingdom; Center for Neurologic Diseases, Harvard Medical School and Brigham and Women's Hospital, Boston, MA 02115; Department of Pharmaceutical Sciences, University of Tennessee, Memphis, TN 38163; and Neuronal Cell Biology and Gene Transfer Laboratory, Center for Human Genetics, Katholieke Universiteit and Flanders Interuniversity Institute for Biotechnology, VIB4 Leuven, Belgium
| | - Ma. Xenia G. Ilagan
- Departments of Molecular Biology and Pharmacology and Psychiatry, Washington University School of Medicine, St. Louis, MO 63110; Department of Biological Chemistry, Merck Research Laboratories, West Point, PA 19486-0004; Department of Neuropathology and Neuroscience, Graduate School of Pharmaceutical Sciences, University of Tokyo, 7-3-1 Hongo Bunkyoku, Tokyo 113-0033, Japan; Department of Biochemistry and Molecular Biology, Merck Sharp and Dohme Research Laboratories, Neuroscience Research Centre, Terlings Park, Harlow, Essex CM20 2QR, United Kingdom; Center for Neurologic Diseases, Harvard Medical School and Brigham and Women's Hospital, Boston, MA 02115; Department of Pharmaceutical Sciences, University of Tennessee, Memphis, TN 38163; and Neuronal Cell Biology and Gene Transfer Laboratory, Center for Human Genetics, Katholieke Universiteit and Flanders Interuniversity Institute for Biotechnology, VIB4 Leuven, Belgium
| | - Anne L. Brunkan
- Departments of Molecular Biology and Pharmacology and Psychiatry, Washington University School of Medicine, St. Louis, MO 63110; Department of Biological Chemistry, Merck Research Laboratories, West Point, PA 19486-0004; Department of Neuropathology and Neuroscience, Graduate School of Pharmaceutical Sciences, University of Tokyo, 7-3-1 Hongo Bunkyoku, Tokyo 113-0033, Japan; Department of Biochemistry and Molecular Biology, Merck Sharp and Dohme Research Laboratories, Neuroscience Research Centre, Terlings Park, Harlow, Essex CM20 2QR, United Kingdom; Center for Neurologic Diseases, Harvard Medical School and Brigham and Women's Hospital, Boston, MA 02115; Department of Pharmaceutical Sciences, University of Tennessee, Memphis, TN 38163; and Neuronal Cell Biology and Gene Transfer Laboratory, Center for Human Genetics, Katholieke Universiteit and Flanders Interuniversity Institute for Biotechnology, VIB4 Leuven, Belgium
| | - Silva Hecimovic
- Departments of Molecular Biology and Pharmacology and Psychiatry, Washington University School of Medicine, St. Louis, MO 63110; Department of Biological Chemistry, Merck Research Laboratories, West Point, PA 19486-0004; Department of Neuropathology and Neuroscience, Graduate School of Pharmaceutical Sciences, University of Tokyo, 7-3-1 Hongo Bunkyoku, Tokyo 113-0033, Japan; Department of Biochemistry and Molecular Biology, Merck Sharp and Dohme Research Laboratories, Neuroscience Research Centre, Terlings Park, Harlow, Essex CM20 2QR, United Kingdom; Center for Neurologic Diseases, Harvard Medical School and Brigham and Women's Hospital, Boston, MA 02115; Department of Pharmaceutical Sciences, University of Tennessee, Memphis, TN 38163; and Neuronal Cell Biology and Gene Transfer Laboratory, Center for Human Genetics, Katholieke Universiteit and Flanders Interuniversity Institute for Biotechnology, VIB4 Leuven, Belgium
| | - Yue-ming Li
- Departments of Molecular Biology and Pharmacology and Psychiatry, Washington University School of Medicine, St. Louis, MO 63110; Department of Biological Chemistry, Merck Research Laboratories, West Point, PA 19486-0004; Department of Neuropathology and Neuroscience, Graduate School of Pharmaceutical Sciences, University of Tokyo, 7-3-1 Hongo Bunkyoku, Tokyo 113-0033, Japan; Department of Biochemistry and Molecular Biology, Merck Sharp and Dohme Research Laboratories, Neuroscience Research Centre, Terlings Park, Harlow, Essex CM20 2QR, United Kingdom; Center for Neurologic Diseases, Harvard Medical School and Brigham and Women's Hospital, Boston, MA 02115; Department of Pharmaceutical Sciences, University of Tennessee, Memphis, TN 38163; and Neuronal Cell Biology and Gene Transfer Laboratory, Center for Human Genetics, Katholieke Universiteit and Flanders Interuniversity Institute for Biotechnology, VIB4 Leuven, Belgium
| | - Min Xu
- Departments of Molecular Biology and Pharmacology and Psychiatry, Washington University School of Medicine, St. Louis, MO 63110; Department of Biological Chemistry, Merck Research Laboratories, West Point, PA 19486-0004; Department of Neuropathology and Neuroscience, Graduate School of Pharmaceutical Sciences, University of Tokyo, 7-3-1 Hongo Bunkyoku, Tokyo 113-0033, Japan; Department of Biochemistry and Molecular Biology, Merck Sharp and Dohme Research Laboratories, Neuroscience Research Centre, Terlings Park, Harlow, Essex CM20 2QR, United Kingdom; Center for Neurologic Diseases, Harvard Medical School and Brigham and Women's Hospital, Boston, MA 02115; Department of Pharmaceutical Sciences, University of Tennessee, Memphis, TN 38163; and Neuronal Cell Biology and Gene Transfer Laboratory, Center for Human Genetics, Katholieke Universiteit and Flanders Interuniversity Institute for Biotechnology, VIB4 Leuven, Belgium
| | - Huw D. Lewis
- Departments of Molecular Biology and Pharmacology and Psychiatry, Washington University School of Medicine, St. Louis, MO 63110; Department of Biological Chemistry, Merck Research Laboratories, West Point, PA 19486-0004; Department of Neuropathology and Neuroscience, Graduate School of Pharmaceutical Sciences, University of Tokyo, 7-3-1 Hongo Bunkyoku, Tokyo 113-0033, Japan; Department of Biochemistry and Molecular Biology, Merck Sharp and Dohme Research Laboratories, Neuroscience Research Centre, Terlings Park, Harlow, Essex CM20 2QR, United Kingdom; Center for Neurologic Diseases, Harvard Medical School and Brigham and Women's Hospital, Boston, MA 02115; Department of Pharmaceutical Sciences, University of Tennessee, Memphis, TN 38163; and Neuronal Cell Biology and Gene Transfer Laboratory, Center for Human Genetics, Katholieke Universiteit and Flanders Interuniversity Institute for Biotechnology, VIB4 Leuven, Belgium
| | - Meera T. Saxena
- Departments of Molecular Biology and Pharmacology and Psychiatry, Washington University School of Medicine, St. Louis, MO 63110; Department of Biological Chemistry, Merck Research Laboratories, West Point, PA 19486-0004; Department of Neuropathology and Neuroscience, Graduate School of Pharmaceutical Sciences, University of Tokyo, 7-3-1 Hongo Bunkyoku, Tokyo 113-0033, Japan; Department of Biochemistry and Molecular Biology, Merck Sharp and Dohme Research Laboratories, Neuroscience Research Centre, Terlings Park, Harlow, Essex CM20 2QR, United Kingdom; Center for Neurologic Diseases, Harvard Medical School and Brigham and Women's Hospital, Boston, MA 02115; Department of Pharmaceutical Sciences, University of Tennessee, Memphis, TN 38163; and Neuronal Cell Biology and Gene Transfer Laboratory, Center for Human Genetics, Katholieke Universiteit and Flanders Interuniversity Institute for Biotechnology, VIB4 Leuven, Belgium
| | - Bart De Strooper
- Departments of Molecular Biology and Pharmacology and Psychiatry, Washington University School of Medicine, St. Louis, MO 63110; Department of Biological Chemistry, Merck Research Laboratories, West Point, PA 19486-0004; Department of Neuropathology and Neuroscience, Graduate School of Pharmaceutical Sciences, University of Tokyo, 7-3-1 Hongo Bunkyoku, Tokyo 113-0033, Japan; Department of Biochemistry and Molecular Biology, Merck Sharp and Dohme Research Laboratories, Neuroscience Research Centre, Terlings Park, Harlow, Essex CM20 2QR, United Kingdom; Center for Neurologic Diseases, Harvard Medical School and Brigham and Women's Hospital, Boston, MA 02115; Department of Pharmaceutical Sciences, University of Tennessee, Memphis, TN 38163; and Neuronal Cell Biology and Gene Transfer Laboratory, Center for Human Genetics, Katholieke Universiteit and Flanders Interuniversity Institute for Biotechnology, VIB4 Leuven, Belgium
| | - Archie Coonrod
- Departments of Molecular Biology and Pharmacology and Psychiatry, Washington University School of Medicine, St. Louis, MO 63110; Department of Biological Chemistry, Merck Research Laboratories, West Point, PA 19486-0004; Department of Neuropathology and Neuroscience, Graduate School of Pharmaceutical Sciences, University of Tokyo, 7-3-1 Hongo Bunkyoku, Tokyo 113-0033, Japan; Department of Biochemistry and Molecular Biology, Merck Sharp and Dohme Research Laboratories, Neuroscience Research Centre, Terlings Park, Harlow, Essex CM20 2QR, United Kingdom; Center for Neurologic Diseases, Harvard Medical School and Brigham and Women's Hospital, Boston, MA 02115; Department of Pharmaceutical Sciences, University of Tennessee, Memphis, TN 38163; and Neuronal Cell Biology and Gene Transfer Laboratory, Center for Human Genetics, Katholieke Universiteit and Flanders Interuniversity Institute for Biotechnology, VIB4 Leuven, Belgium
| | - Taisuke Tomita
- Departments of Molecular Biology and Pharmacology and Psychiatry, Washington University School of Medicine, St. Louis, MO 63110; Department of Biological Chemistry, Merck Research Laboratories, West Point, PA 19486-0004; Department of Neuropathology and Neuroscience, Graduate School of Pharmaceutical Sciences, University of Tokyo, 7-3-1 Hongo Bunkyoku, Tokyo 113-0033, Japan; Department of Biochemistry and Molecular Biology, Merck Sharp and Dohme Research Laboratories, Neuroscience Research Centre, Terlings Park, Harlow, Essex CM20 2QR, United Kingdom; Center for Neurologic Diseases, Harvard Medical School and Brigham and Women's Hospital, Boston, MA 02115; Department of Pharmaceutical Sciences, University of Tennessee, Memphis, TN 38163; and Neuronal Cell Biology and Gene Transfer Laboratory, Center for Human Genetics, Katholieke Universiteit and Flanders Interuniversity Institute for Biotechnology, VIB4 Leuven, Belgium
| | - Takeshi Iwatsubo
- Departments of Molecular Biology and Pharmacology and Psychiatry, Washington University School of Medicine, St. Louis, MO 63110; Department of Biological Chemistry, Merck Research Laboratories, West Point, PA 19486-0004; Department of Neuropathology and Neuroscience, Graduate School of Pharmaceutical Sciences, University of Tokyo, 7-3-1 Hongo Bunkyoku, Tokyo 113-0033, Japan; Department of Biochemistry and Molecular Biology, Merck Sharp and Dohme Research Laboratories, Neuroscience Research Centre, Terlings Park, Harlow, Essex CM20 2QR, United Kingdom; Center for Neurologic Diseases, Harvard Medical School and Brigham and Women's Hospital, Boston, MA 02115; Department of Pharmaceutical Sciences, University of Tennessee, Memphis, TN 38163; and Neuronal Cell Biology and Gene Transfer Laboratory, Center for Human Genetics, Katholieke Universiteit and Flanders Interuniversity Institute for Biotechnology, VIB4 Leuven, Belgium
| | - Chad L. Moore
- Departments of Molecular Biology and Pharmacology and Psychiatry, Washington University School of Medicine, St. Louis, MO 63110; Department of Biological Chemistry, Merck Research Laboratories, West Point, PA 19486-0004; Department of Neuropathology and Neuroscience, Graduate School of Pharmaceutical Sciences, University of Tokyo, 7-3-1 Hongo Bunkyoku, Tokyo 113-0033, Japan; Department of Biochemistry and Molecular Biology, Merck Sharp and Dohme Research Laboratories, Neuroscience Research Centre, Terlings Park, Harlow, Essex CM20 2QR, United Kingdom; Center for Neurologic Diseases, Harvard Medical School and Brigham and Women's Hospital, Boston, MA 02115; Department of Pharmaceutical Sciences, University of Tennessee, Memphis, TN 38163; and Neuronal Cell Biology and Gene Transfer Laboratory, Center for Human Genetics, Katholieke Universiteit and Flanders Interuniversity Institute for Biotechnology, VIB4 Leuven, Belgium
| | - Alison Goate
- Departments of Molecular Biology and Pharmacology and Psychiatry, Washington University School of Medicine, St. Louis, MO 63110; Department of Biological Chemistry, Merck Research Laboratories, West Point, PA 19486-0004; Department of Neuropathology and Neuroscience, Graduate School of Pharmaceutical Sciences, University of Tokyo, 7-3-1 Hongo Bunkyoku, Tokyo 113-0033, Japan; Department of Biochemistry and Molecular Biology, Merck Sharp and Dohme Research Laboratories, Neuroscience Research Centre, Terlings Park, Harlow, Essex CM20 2QR, United Kingdom; Center for Neurologic Diseases, Harvard Medical School and Brigham and Women's Hospital, Boston, MA 02115; Department of Pharmaceutical Sciences, University of Tennessee, Memphis, TN 38163; and Neuronal Cell Biology and Gene Transfer Laboratory, Center for Human Genetics, Katholieke Universiteit and Flanders Interuniversity Institute for Biotechnology, VIB4 Leuven, Belgium
| | - Michael S. Wolfe
- Departments of Molecular Biology and Pharmacology and Psychiatry, Washington University School of Medicine, St. Louis, MO 63110; Department of Biological Chemistry, Merck Research Laboratories, West Point, PA 19486-0004; Department of Neuropathology and Neuroscience, Graduate School of Pharmaceutical Sciences, University of Tokyo, 7-3-1 Hongo Bunkyoku, Tokyo 113-0033, Japan; Department of Biochemistry and Molecular Biology, Merck Sharp and Dohme Research Laboratories, Neuroscience Research Centre, Terlings Park, Harlow, Essex CM20 2QR, United Kingdom; Center for Neurologic Diseases, Harvard Medical School and Brigham and Women's Hospital, Boston, MA 02115; Department of Pharmaceutical Sciences, University of Tennessee, Memphis, TN 38163; and Neuronal Cell Biology and Gene Transfer Laboratory, Center for Human Genetics, Katholieke Universiteit and Flanders Interuniversity Institute for Biotechnology, VIB4 Leuven, Belgium
| | - Mark Shearman
- Departments of Molecular Biology and Pharmacology and Psychiatry, Washington University School of Medicine, St. Louis, MO 63110; Department of Biological Chemistry, Merck Research Laboratories, West Point, PA 19486-0004; Department of Neuropathology and Neuroscience, Graduate School of Pharmaceutical Sciences, University of Tokyo, 7-3-1 Hongo Bunkyoku, Tokyo 113-0033, Japan; Department of Biochemistry and Molecular Biology, Merck Sharp and Dohme Research Laboratories, Neuroscience Research Centre, Terlings Park, Harlow, Essex CM20 2QR, United Kingdom; Center for Neurologic Diseases, Harvard Medical School and Brigham and Women's Hospital, Boston, MA 02115; Department of Pharmaceutical Sciences, University of Tennessee, Memphis, TN 38163; and Neuronal Cell Biology and Gene Transfer Laboratory, Center for Human Genetics, Katholieke Universiteit and Flanders Interuniversity Institute for Biotechnology, VIB4 Leuven, Belgium
| | - Raphael Kopan
- Departments of Molecular Biology and Pharmacology and Psychiatry, Washington University School of Medicine, St. Louis, MO 63110; Department of Biological Chemistry, Merck Research Laboratories, West Point, PA 19486-0004; Department of Neuropathology and Neuroscience, Graduate School of Pharmaceutical Sciences, University of Tokyo, 7-3-1 Hongo Bunkyoku, Tokyo 113-0033, Japan; Department of Biochemistry and Molecular Biology, Merck Sharp and Dohme Research Laboratories, Neuroscience Research Centre, Terlings Park, Harlow, Essex CM20 2QR, United Kingdom; Center for Neurologic Diseases, Harvard Medical School and Brigham and Women's Hospital, Boston, MA 02115; Department of Pharmaceutical Sciences, University of Tennessee, Memphis, TN 38163; and Neuronal Cell Biology and Gene Transfer Laboratory, Center for Human Genetics, Katholieke Universiteit and Flanders Interuniversity Institute for Biotechnology, VIB4 Leuven, Belgium
- To whom correspondence should be addressed. E-mail:
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