Design and synthesis of digitally encoded polymers that can be decoded and erased

Biopolymers such as DNA store information in their chains using controlled sequences of monomers. Here we describe a non-natural information-containing macromolecule that can store and retrieve digital information. Monodisperse sequence-encoded poly(alkoxyamine amide)s were synthesized using an iterative strategy employing two chemoselective steps: the reaction of a primary amine with an acid anhydride and the radical coupling of a carbon-centred radical with a nitroxide. A binary code was implemented in the polymer chains using three monomers: one nitroxide spacer and two interchangeable anhydrides defined as 0-bit and 1-bit. This methodology allows encryption of any desired sequence in the chains. Moreover, the formed sequences are easy to decode using tandem mass spectrometry. Indeed, these polymers follow predictable fragmentation pathways that can be easily deciphered. Moreover, poly(alkoxyamine amide)s are thermolabile. Thus, the digital information encrypted in the chains can be erased by heating the polymers in the solid state or in solution.

Photo-induced sequence defined macromolecules via hetero bifunctional synthons

We report the first photochemical protocol for the generation of sequence defined macromolecules employing two hetero bifunctional photoreactive synthons, exploiting the orthogonal nature of photochemical - via the use of caged dienes - and thermally driven ligation protocols. We demonstrate that the iterative alternating synthon addition to an initial bifunctional core under irradiation at ambient temperature enables the generation of a macromolecule with up to 10 units (M = 3231.58 g mol(-1), Đ = 1.00). The resulting macromolecules are monodisperse and feature absolute chain end fidelity. The unit-by-unit construction of the macromolecule is evidenced by Nuclear Magnetic Resonance Spectroscopy, Electrospray Ionization Mass Spectrometry and Size Exclusion Chromatography. The fundamental principle demonstrated herein paves the way for employing photochemical strategies for the design of sequence defined polymers.

Translation of the assembling trajectory by preorganisation: a study of the magnetic properties of 1D polymeric unpaired electrons immobilised on a discrete nanoscopic scaffold

A nitronyl nitroxide (NN)-appended hexabenzocoronene (HBC(NN)), when allowed to coassemble with bis(hexafluoroacetylacetonato)cobalt(II), forms a coaxial nanotubular architecture featuring NN-Co(II) coordinated copolymer chains immobilised on the outer and inner nanotube surfaces. Upon lowering the temperature, this nanotube has enhanced magnetic susceptibility below 10 K.

Synthesis of Sequence-Regulated Polymers: Alternating Polyacetylene through Regioselective Anionic Polymerization of Butadiene Derivatives

We hereby report a strategy to synthesize sequence-regulated substituted polyacetylenes using living anionic polymerization of designed monomers, that is, 2,4-disubstituted butadienes. It is found that proper substituents, such as 2-isopropyl-4-phenyl, lead to nearly 100% 1,4-addition during the polymerization, thus, giving product with high regioregularity, precise molecular weight, and narrow molecular weight distribution. The product is convertible into sequence-regulated substituted polyacetylene by oxidative dehydrogenation using 2,3-dichloro-5,6-dicyano-1,4-benzoquinone (DDQ). Block copolymers containing polyacetylene segment are also prepared. Owing to the versatility of the anionic reactions, the present strategy can serve as a powerful tool of precise control on polymer chain microstructure, architecture, and functionalities in the same time.

Beyond stereoselectivity, switchable catalysis: some of the last frontier challenges in ring-opening polymerization of cyclic esters

Metal-based catalysts and initiators have played a pivotal role in the ring-opening polymerization (ROP) of cyclic esters, thanks to their high activity and remarkable ability to control precisely the architectures of the resulting polyesters in terms of molar mass, dispersity, microstructure, or tacticity. Today, after two decades of extensive research, the field is slowly reaching maturity. However, several challenges remain, while original concepts have emerged around new types or new applications of catalysis. This Review is not intended to comprehensively cover all of these aspects. Rather, it provides a personal overview of the very recent progress achieved in some selected, important aspects of ROP catalysis--stereocontrol and switchable catalysis. Hence, the first part addresses the development of new metal-based catalysts for the isoselective ROP of racemic lactide towards stereoblock copolymers, and the use of syndioselective ROP metal catalysts to control the monomer sequence in copolymers. A second part covers the development of ROP catalysts--primarily metal-based catalysts, but also organocatalysts--that can be externally regulated by the use of chemical or photo stimuli to switch them between two states with different catalytic abilities. Current challenges and opportunities are highlighted.

Alternating copolymerization by nitroxide-mediated polymerization and subsequent orthogonal functionalization

A novel method for the preparation of functionalized alternating copolymers is presented. Nitroxide-mediated polymerization of hexafluoroisopropyl acrylate with 7-octenyl vinyl ether provides the corresponding alternating polymer, which can be chemically modified using two orthogonal polymer-analogous reactions. A thiol-ene click reaction followed by amidation provides dual-functionalized alternating copolymers. The potential of this method is illustrated by the preparation of a small library (15 examples) of functionalized alternating copolymers.

A peptide-functionalized polymer as a minimal scaffold protein to enhance cluster formation in early T cell signal transduction

In cellular signal transduction, scaffold proteins provide binding sites to organize signaling proteins into supramolecular complexes and act as nodes in the signaling network. Furthermore, multivalent interactions between the scaffold and other signaling proteins contribute to the formation of protein microclusters. Such microclusters are prominent in early T cell signaling. Here, we explored the minimal structural requirement for a scaffold protein by coupling multiple copies of a proline-rich peptide corresponding to an interaction motif for the SH3 domain of the adaptor protein GADS to an N-(2-hydroxypropyl)methacrylamide polymer backbone. When added to GADS-containing cell lysates, these scaffolds (but not individual peptides) promoted the binding of GADS to peptide microarrays. This can be explained by the cross-linking of GADS into larger complexes. Furthermore, following import into Jurkat T cell leukemia cells, this synthetic scaffold enhanced the formation of microclusters of signaling proteins.

Simulation guided design of globular single-chain nanoparticles by tuning the solvent quality

The control of primary and further structures of individual folded/collapsed synthetic polymers has received significant attention in recent years. However, the synthesis of single-chain nanoparticles (SCNPs) showing a compact, globular conformation in solution has turned out so far to be highly elusive. By means of simulations, we propose two methods for obtaining globular SCNPs in solution. The first synthesis route is performed in the bad solvent, with the precursor anchored to a surface. In the second route we use a random copolymer precursor with unreactive solvophilic and reactive solvophobic units, which form a single core-shell structure. Both protocols prevent intermolecular cross-linking. After recovering good solvent conditions, the swollen nanoparticles maintain their globular character. The proposed methods are experimentally realizable and do not require specific sequence control of the precursors. Our results pave the way for the synthesis via solvent-assisted design of a new generation of globular soft nanoparticles mimicking global conformations of native proteins in solution.

Novel encoding methods for DNA-templated chemical libraries

Among various types of DNA-encoded chemical libraries, DNA-templated library takes advantage of the sequence-specificity of DNA hybridization, enabling not only highly effective DNA-templated chemical reactions, but also high fidelity in library encoding. This brief review summarizes recent advances that have been made on the encoding strategies for DNA-templated libraries, and it also highlights their respective advantages and limitations for the preparation of DNA-encoded libraries.

Preparation of complex multiblock copolymers via aqueous RAFT polymerization at room temperature

Room temperature RAFT polymerisation for the design of multiblock acrylate/acrylamide copolymers.

Fibrillar gels via the self-assembly of poly(l-glutamate)-based statistical copolymers

The synthesis of smart polypeptide hydrogels from photo-crosslinked self-assembled poly(γ-benzyl-l-glutamate-co-allylglycine) organogels is described.

Sequential Michael addition thiol–ene and radical-mediated thiol–ene reactions in one-pot produced sequence-ordered polymers

Sequential Michael addition-based thiol–ene and free radical mediated thiol–ene reactions for preparing sequence-ordered polymers are reported for the first time.

Dual side chain control in the synthesis of novel sequence-defined oligomers through the Ugi four-component reaction

The synthesis of sequence-defined oligomers by the iterative application of the modular Ugi four-component reaction (U-4CR) and the efficient thiol–ene addition reaction is described.

Poly(thiolactone) homo- and copolymers from maleimide thiolactone: synthesis and functionalization

We describe the synthesis of a thiolactone-functionalized maleimide (MITla), its copolymerization into poly(thiolactone) homo- and copolymers via controlled or free radical polymerization (CRP or FRP) techniques, and subsequent modification.

Advances in single chain technology

This review summarizes the recent advances in single chain technology for the construction of soft nano-objects via chain compaction, and their envisioned applications.

Sequence-controlled multi-block copolymerization of acrylamides via aqueous SET-LRP at 0 °C

Aqueous single electron transfer living radical polymerization (SET-LRP) has been employed to synthesize multi-block homopolymers and copolymers of a range of acrylamide monomers including N-isopropylacrylamide (NIPAM), 2-hydroxyethyl acrylamide (HEAA), N,N-dimethyl acrylamide (DMA) and N,N-diethylacrylamide (DEA).

Functional polyesters derived from alternating copolymerization of norbornene anhydride and epoxides

Alternating polymerization of norbornene containing polyesters and their functionalization.

Effect of monomer sequence of poly(histidine/lysine) catiomers on gene packing capacity and delivery efficiency

This work presents a novel method to synthesize reducible polycations with specific monomer sequence, and provides new insight on how a monomer sequence of the polymeric catiomer will affect its gene packing capacity and delivery efficiency.

Controlling monomer-sequence using supramolecular templates

This review discusses the template-directed preparation of sequence-defined polymers.

Supramolecular glycopolymers with thermo-responsive self-assembly and lectin binding

Incorporating monomers into sequence-defined synthetic macromolecules endows them to mimic nature which results in key residues being anchored in the molecular recognition pattern.

Efficiency assessment of single unit monomer insertion reactions for monomer sequence control: kinetic simulations and experimental observations

On-line microreactor/ESI-MS experiments and kinetic simulations on single unit monomer insertions are combined to assess the efficiency of the SUMI process.

RAFT polymerization and associated reactivity ratios of methacrylate-functionalized mixed bio-oil constituents

High separations costs reduce the practicality of polymers sourced from renewable bio-oils, motivating economical multicomponent bio-oil polymerizations. Thus, this paper investigates polymerization behavior of model bio-oil components and their mixtures.

Convergent synthesis of digitally-encoded poly(alkoxyamine amide)s

Binary-encoded poly(alkoxyamine amide)s were prepared by oligomer ligation.

Aperiodic Copolymers

Current polymer terminology only describes very simple copolymer structures such as block, graft, alternating periodic, or statistical copolymers. This restricted vocabulary implies that copolymers exhibit either segregated (i.e., block and graft), regular (i.e., alternating and periodic), or uncontrolled (i.e., statistical or random) comonomer sequence distributions. This standard classification does not include many new types of sequence-controlled copolymers that have been reported in recent years. In this context, the present viewpoint describes a new category of copolymers: aperiodic copolymers. Such structures can be defined as copolymers in which monomer sequence distribution is not regular but follows the same arrangement in all chains. The term aperiodic can be used to describe encoded comonomer sequences in monodisperse sequence-defined copolymers but also the block sequence of some multiblock copolymers. These new types of copolymers open up very interesting perspectives for the design of complex materials. Some recent relevant literature on the topic is discussed herein.

Towards applications of synthetic genetic polymers in diagnosis and therapy

Aptamers are a class of single-stranded nucleic acid ligands that can bind their targets with high specificity and affinities rivalling those of antibodies. First described over 20 years ago by Tuerk & Gold [1] and Ellington & Szostak [2] (who coined the name), their promise as both diagnostic and therapeutic agents remains to be realised. Key problems include the generally low biostability of the standard DNA/RNA or mixed RNA/2'F-DNA backbones under physiological conditions, limited chemical diversity of functional groups on the natural nucleobases, and the difficulty in reliably discovering aptamer ligands to some therapeutic targets. This review will describe recent progress in developing aptamer selection technology as well as expanding aptamer chemistry and informational complexity to improve aptamer discovery and properties.

Processive catalysis

Nature's enzymes are an ongoing source of inspiration for scientists. The complex processes behind their selectivity and efficiency is slowly being unraveled, and these findings have spawned many biomimetic catalysts. However, nearly all focus on the conversion of small molecular substrates. Nature itself is replete with inventive catalytic systems which modify, replicate, or decompose entire polymers, often in a processive fashion. Such processivity can, for example, enhance the rate of catalysis by clamping to the polymer substrate, which imparts a large effective molarity. Reviewed herein are the various strategies for processivity in nature's arsenal and their properties. An overview of what has been achieved by chemists aiming to mimic one of nature's greatest tricks is also included.