51
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Ma Z, Li W, Zhang Y, Shi R, Zhang Y, Zhang J, Li X, Lu L, An Q. An Effective Osteogenesis Porous CaP/Collagen Interface Compatible with Various Substrates Fabricated by Controlled Mineralization in a Delicately Adjustable Organic Matrix. Chemistry 2019; 25:16366-16376. [PMID: 31602714 DOI: 10.1002/chem.201903925] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2019] [Revised: 09/27/2019] [Indexed: 11/09/2022]
Abstract
Increasing bone formation on the surfaces of implants such as screws, plates, or shims holds great significance for clinical medicine. However, osteogenesis implant coatings that mimic natural bone in terms of both their components and structural features are still lacking. Here we report the biomimetic interface of calcium phosphate (CaP) in a collagen matrix fabricated by controlled mineralization that presents biomimetic porous features. The porous CaP/collagen interface, with a thickness of about 1 μm, significantly enhances osteogenesis, as verified at both the gene and protein levels as well as by in vivo experiments. Taking advantage of the generality of the method, the biomimetic interface was prepared on a variety of substrates, including conductive substrates, 3D metal meshes, plastic or elastic substrates, and even on filter papers. The adjustability and generality of the method have enabled new characterization tests to be developed during experiments on cells and thus should greatly facilitate clinical medicine and tissue engineering.
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Affiliation(s)
- Zequn Ma
- Beijing Key Laboratory of Materials Utilization of Nonmetallic Minerals and Solid Wastes, National Laboratory of Mineral Materials, School of Materials Sciences and Technology, China University of Geosciences, Beijing, 100083, China
| | - Weiyang Li
- Institute of Traumatology and Orthopaedics, Beijing Jishuitan Hospital, Beijing, 100035, China
| | - Yihe Zhang
- Beijing Key Laboratory of Materials Utilization of Nonmetallic Minerals and Solid Wastes, National Laboratory of Mineral Materials, School of Materials Sciences and Technology, China University of Geosciences, Beijing, 100083, China
| | - Rui Shi
- Institute of Traumatology and Orthopaedics, Beijing Jishuitan Hospital, Beijing, 100035, China
| | - Yi Zhang
- Beijing Key Laboratory of Materials Utilization of Nonmetallic Minerals and Solid Wastes, National Laboratory of Mineral Materials, School of Materials Sciences and Technology, China University of Geosciences, Beijing, 100083, China
| | - Jingshuang Zhang
- Institute of Traumatology and Orthopaedics, Beijing Jishuitan Hospital, Beijing, 100035, China
| | - Xiangming Li
- Beijing Key Laboratory of Materials Utilization of Nonmetallic Minerals and Solid Wastes, National Laboratory of Mineral Materials, School of Materials Sciences and Technology, China University of Geosciences, Beijing, 100083, China.,College of Materials Sciences and Technology, Guangdong University of Petrochemical Technology, Maoming, 525000, China
| | - Limei Lu
- Beijing Key Laboratory of Materials Utilization of Nonmetallic Minerals and Solid Wastes, National Laboratory of Mineral Materials, School of Materials Sciences and Technology, China University of Geosciences, Beijing, 100083, China
| | - Qi An
- Beijing Key Laboratory of Materials Utilization of Nonmetallic Minerals and Solid Wastes, National Laboratory of Mineral Materials, School of Materials Sciences and Technology, China University of Geosciences, Beijing, 100083, China
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52
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Uvyn A, De Coen R, Gruijs M, Tuk CW, De Vrieze J, van Egmond M, De Geest BG. Efficient Innate Immune Killing of Cancer Cells Triggered by Cell‐Surface Anchoring of Multivalent Antibody‐Recruiting Polymers. Angew Chem Int Ed Engl 2019. [DOI: 10.1002/ange.201905093] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Annemiek Uvyn
- Department of Pharmaceutics Ghent University Belgium
| | - Ruben De Coen
- Department of Pharmaceutics Ghent University Belgium
| | - Mandy Gruijs
- Department of Molecular Cell Biology and Immunology Amsterdam UMC Amsterdam The Netherlands
| | - Cees W. Tuk
- Department of Molecular Cell Biology and Immunology Amsterdam UMC Amsterdam The Netherlands
| | | | - Marjolein van Egmond
- Department of Molecular Cell Biology and Immunology Amsterdam UMC Amsterdam The Netherlands
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53
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Koide R, Nishimura S. Antiadhesive Nanosomes Facilitate Targeting of the Lysosomal GlcNAc Salvage Pathway through Derailed Cancer Endocytosis. Angew Chem Int Ed Engl 2019; 58:14513-14518. [DOI: 10.1002/anie.201907778] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2019] [Revised: 08/02/2019] [Indexed: 12/12/2022]
Affiliation(s)
- Ryosuke Koide
- Graduate School of Life Science and Faculty of Advanced Life Science Hokkaido University N21, W11, kita-ku Sapporo 001-0021 Japan
| | - Shin‐Ichiro Nishimura
- Graduate School of Life Science and Faculty of Advanced Life Science Hokkaido University N21, W11, kita-ku Sapporo 001-0021 Japan
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54
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Koide R, Nishimura S. Antiadhesive Nanosomes Facilitate Targeting of the Lysosomal GlcNAc Salvage Pathway through Derailed Cancer Endocytosis. Angew Chem Int Ed Engl 2019. [DOI: 10.1002/ange.201907778] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Affiliation(s)
- Ryosuke Koide
- Graduate School of Life Science and Faculty of Advanced Life Science Hokkaido University N21, W11, kita-ku Sapporo 001-0021 Japan
| | - Shin‐Ichiro Nishimura
- Graduate School of Life Science and Faculty of Advanced Life Science Hokkaido University N21, W11, kita-ku Sapporo 001-0021 Japan
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55
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Pavlović RZ, Zhiquan L, Güney M, Lalisse RF, Hopf RG, Gallucci J, Moore C, Xie H, Hadad CM, Badjić JD. Multivalent C−H⋅⋅⋅Cl/Br−C Interactions Directing the Resolution of Dynamic and Twisted Capsules. Chemistry 2019; 25:13124-13130. [PMID: 31282022 DOI: 10.1002/chem.201903006] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2019] [Indexed: 12/22/2022]
Affiliation(s)
- Radoslav Z. Pavlović
- Department of Chemistry and Biochemistry The Ohio State University 100 West 18th Avenue Columbus Ohio 43210 USA
| | - Lei Zhiquan
- Department of Chemistry and Biochemistry The Ohio State University 100 West 18th Avenue Columbus Ohio 43210 USA
| | - Murat Güney
- Department of Chemistry, Science and Art Faculty Agri Ibrahim Çeçen University Agri Turkey
| | - Remy F. Lalisse
- Department of Chemistry and Biochemistry The Ohio State University 100 West 18th Avenue Columbus Ohio 43210 USA
| | - Ryan G. Hopf
- Department of Chemistry and Biochemistry The Ohio State University 100 West 18th Avenue Columbus Ohio 43210 USA
| | - Judith Gallucci
- Department of Chemistry and Biochemistry The Ohio State University 100 West 18th Avenue Columbus Ohio 43210 USA
| | - Curtis Moore
- Department of Chemistry and Biochemistry The Ohio State University 100 West 18th Avenue Columbus Ohio 43210 USA
| | - Han Xie
- Department of Chemistry and Biochemistry The Ohio State University 100 West 18th Avenue Columbus Ohio 43210 USA
| | - Christopher M. Hadad
- Department of Chemistry and Biochemistry The Ohio State University 100 West 18th Avenue Columbus Ohio 43210 USA
| | - Jovica D. Badjić
- Department of Chemistry and Biochemistry The Ohio State University 100 West 18th Avenue Columbus Ohio 43210 USA
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56
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Uvyn A, De Coen R, Gruijs M, Tuk CW, De Vrieze J, van Egmond M, De Geest BG. Efficient Innate Immune Killing of Cancer Cells Triggered by Cell‐Surface Anchoring of Multivalent Antibody‐Recruiting Polymers. Angew Chem Int Ed Engl 2019; 58:12988-12993. [DOI: 10.1002/anie.201905093] [Citation(s) in RCA: 30] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2019] [Revised: 06/04/2019] [Indexed: 12/16/2022]
Affiliation(s)
- Annemiek Uvyn
- Department of Pharmaceutics Ghent University Belgium
| | - Ruben De Coen
- Department of Pharmaceutics Ghent University Belgium
| | - Mandy Gruijs
- Department of Molecular Cell Biology and Immunology Amsterdam UMC Amsterdam The Netherlands
| | - Cees W. Tuk
- Department of Molecular Cell Biology and Immunology Amsterdam UMC Amsterdam The Netherlands
| | | | - Marjolein van Egmond
- Department of Molecular Cell Biology and Immunology Amsterdam UMC Amsterdam The Netherlands
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57
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Cheng Y, Zong L, López‐Andarias J, Bartolami E, Okamoto Y, Ward TR, Sakai N, Matile S. Cell-Penetrating Dynamic-Covalent Benzopolysulfane Networks. Angew Chem Int Ed Engl 2019; 58:9522-9526. [PMID: 31168906 PMCID: PMC6618005 DOI: 10.1002/anie.201905003] [Citation(s) in RCA: 33] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2019] [Indexed: 12/13/2022]
Abstract
Cyclic oligochalcogenides (COCs) are emerging as promising systems to penetrate cells. Clearly better than and different to the reported diselenolanes and epidithiodiketopiperazines, we introduce the benzopolysulfanes (BPS), which show efficient delivery, insensitivity to inhibitors of endocytosis, and compatibility with substrates as large as proteins. This high activity coincides with high reactivity, selectively toward thiols, exceeding exchange rates of disulfides under tension. The result is a dynamic-covalent network of extreme sulfur species, including cyclic oligomers, from dimers to heptamers, with up to nineteen sulfurs in the ring. Selection from this unfolding adaptive network then yields the reactivities and selectivities needed to access new uptake pathways. Contrary to other COCs, BPS show high retention on thiol affinity columns. The identification of new modes of cell penetration is important because they promise new solutions to challenges in delivery and beyond.
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Affiliation(s)
- Yangyang Cheng
- Department of Organic ChemistryUniversity of GenevaGenevaSwitzerland
| | - Lili Zong
- Department of Organic ChemistryUniversity of GenevaGenevaSwitzerland
- Current address: School of Pharmaceutical SciencesXiamen UniversityXiamen361102China
| | | | - Eline Bartolami
- Department of Organic ChemistryUniversity of GenevaGenevaSwitzerland
- Current address: SyMMES, UMR 5819CEA38054GrenobleFrance
| | | | - Thomas R. Ward
- Department of ChemistryUniversity of BaselBaselSwitzerland
| | - Naomi Sakai
- Department of Organic ChemistryUniversity of GenevaGenevaSwitzerland
| | - Stefan Matile
- Department of Organic ChemistryUniversity of GenevaGenevaSwitzerland
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58
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Cheng Y, Zong L, López‐Andarias J, Bartolami E, Okamoto Y, Ward TR, Sakai N, Matile S. Cell‐Penetrating Dynamic‐Covalent Benzopolysulfane Networks. Angew Chem Int Ed Engl 2019. [DOI: 10.1002/ange.201905003] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Affiliation(s)
- Yangyang Cheng
- Department of Organic ChemistryUniversity of Geneva Geneva Switzerland
| | - Lili Zong
- Department of Organic ChemistryUniversity of Geneva Geneva Switzerland
- Current address: School of Pharmaceutical SciencesXiamen University Xiamen 361102 China
| | | | - Eline Bartolami
- Department of Organic ChemistryUniversity of Geneva Geneva Switzerland
- Current address: SyMMES, UMR 5819CEA 38054 Grenoble France
| | | | - Thomas R. Ward
- Department of ChemistryUniversity of Basel Basel Switzerland
| | - Naomi Sakai
- Department of Organic ChemistryUniversity of Geneva Geneva Switzerland
| | - Stefan Matile
- Department of Organic ChemistryUniversity of Geneva Geneva Switzerland
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59
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Lin CH, Wen HC, Chiang CC, Huang JS, Chen Y, Wang SK. Polyproline Tri-Helix Macrocycles as Nanosized Scaffolds to Control Ligand Patterns for Selective Protein Oligomer Interactions. SMALL (WEINHEIM AN DER BERGSTRASSE, GERMANY) 2019; 15:e1900561. [PMID: 30977296 DOI: 10.1002/smll.201900561] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/30/2019] [Indexed: 06/09/2023]
Abstract
Multivalent ligand-receptor interactions play essential roles in biological recognition and signaling. As the receptor arrangement on the cell surface can alter the outcome of cell signaling and also provide spatial specificity for ligand binding, controlling the presentation of ligands has become a promising strategy to manipulate or selectively target protein receptors. The lack of adjustable universal tools to control ligand positions at the size of a few nanometers has prompted the development of polyproline tri-helix macrocycles as scaffolds to present ligands in designated patterns. Model lectin Helix pomatia agglutinin has shown selectivity toward the matching GalNAc ligand pattern matching its binding sites arrangement. The GalNAc pattern selectivity is also observed on intact asialoglycoprotein receptor oligomer on human hepatoma cells showing the pattern-selective interaction can be achieved not only on isolated protein oligomers but also the receptors arranged on the cell surface. As the scaffold design allows convenient creation of versatile ligand patterns, it can be expected as a promising tool to probe the arrangement of receptors on the cell surface and as nanomedicine to manipulate signaling or cell recognition.
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Affiliation(s)
- Cin-Hao Lin
- Department of Chemistry, National Tsing Hua University, Hsinchu, 30013, Taiwan
| | - Hsin-Chuan Wen
- Department of Chemistry, National Tsing Hua University, Hsinchu, 30013, Taiwan
| | - Cheng-Chin Chiang
- Institute of Biomedical Engineering, National Tsing Hua University, Hsinchu, 30013, Taiwan
| | - Jen-Sheng Huang
- Department of Chemistry, National Tsing Hua University, Hsinchu, 30013, Taiwan
| | - Yunching Chen
- Institute of Biomedical Engineering, National Tsing Hua University, Hsinchu, 30013, Taiwan
- Frontier Research Center on Fundamental and Applied Sciences of Matters, National Tsing Hua University, Hsinchu, 30013, Taiwan
| | - Sheng-Kai Wang
- Department of Chemistry, National Tsing Hua University, Hsinchu, 30013, Taiwan
- Frontier Research Center on Fundamental and Applied Sciences of Matters, National Tsing Hua University, Hsinchu, 30013, Taiwan
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60
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Compain P. Multivalent Effect in Glycosidase Inhibition: The End of the Beginning. CHEM REC 2019; 20:10-22. [PMID: 30993894 DOI: 10.1002/tcr.201900004] [Citation(s) in RCA: 34] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2019] [Revised: 03/15/2019] [Indexed: 12/21/2022]
Abstract
Glycosidases are ubiquitous enzymes involved in a diversity of key biological processes such as energy uptake or cell wall degradation. The design of specific glycosidase inhibitors has been therefore the subject of intense research efforts in academia and pharmaceutical industry. However, until recently, the study of the impact of multivalency on glycosidase inhibition was almost completely neglected. The following account will review our ten year journey on the design of multivalent glycomimetics within our research group, from the discovery of the first strong multivalent effect in glycosidase inhibition to the high-resolution crystal structures of Jack bean α-mannosidase in complex with the multimeric inhibitor displaying the largest binding enhancements reported so far.
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Affiliation(s)
- Philippe Compain
- Laboratoire d'Innovation Moléculaire et Applications (LIMA), Univ. de Strasbourg, Univ. de Haute-Alsace, CNRS (UMR 7042), Equipe de Synthèse Organique et Molécules Bioactives (SYBIO), ECPM, 25 Rue Becquerel, 67000, Strasbourg, France
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61
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Yang Z, Jiang S, Li F, Qiu Y, Gu J, Pettigrew RI, Ferrari M, Hamilton DJ, Li Z. Single-Molecule Force Measurement Guides the Design of Multivalent Ligands with Picomolar Affinity. Angew Chem Int Ed Engl 2019; 58:5272-5276. [PMID: 30697890 PMCID: PMC6503962 DOI: 10.1002/anie.201814347] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2018] [Indexed: 11/12/2022]
Abstract
Interaction of multiple entities and receptors, or multivalency is widely applied to achieve high affinity ligands for diagnostic and therapeutic purposes. However, lack of knowledge on receptor distribution in living subjects remains a challenge for rational structure design. Herein, we develop a force measurement platform to probe the distribution and separation of the cell surface vascular endothelial growth factor receptors (VEGFR) in live cells, and use this to assess the geometry of appropriate linkers for distinct multivalent binding modes. A tetravalent lead ZD-4, which was developed from an antitumor drug ZD6474 (Vandetanib) with combined hybrid binding effects, yielded a 2000-fold improvement in the binding affinity to VEGFR with IC50 value of 25 pm. We confirmed the improved affinity by the associated increase of tumor uptake in the VEGFR-targeting positron emission tomography (PET) imaging using U87 tumor xenograft mouse model.
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Affiliation(s)
- Zhen Yang
- Center for Bioenergetics, Houston Methodist Research Institute, 6670 Bertner Avenue, Houston, TX, 77030, USA
| | - Sheng Jiang
- State Key Laboratory of Natural Medicines, School of Pharmacy and School of Engineering, China Pharmaceutical University, Nanjing, 21009, China
| | - Feng Li
- Center for Bioenergetics, Houston Methodist Research Institute, 6670 Bertner Avenue, Houston, TX, 77030, USA
| | - Yatao Qiu
- State Key Laboratory of Natural Medicines, School of Pharmacy and School of Engineering, China Pharmaceutical University, Nanjing, 21009, China
| | - Jianhua Gu
- Department of NanoMedicine, Houston Methodist Research Institute, USA
| | - Roderic I Pettigrew
- Engineering Medicine, Houston Methodist Hospital and Texas A&M University, USA
| | - Mauro Ferrari
- Department of NanoMedicine, Houston Methodist Research Institute, USA
- Department of Radiology, Department of Medicine, Weil Cornell Medicine, 1300 York Avenue, New York, NY, 10065, USA
| | - Dale J Hamilton
- Center for Bioenergetics, Houston Methodist Research Institute, 6670 Bertner Avenue, Houston, TX, 77030, USA
- Department of Radiology, Department of Medicine, Weil Cornell Medicine, 1300 York Avenue, New York, NY, 10065, USA
| | - Zheng Li
- Center for Bioenergetics, Houston Methodist Research Institute, 6670 Bertner Avenue, Houston, TX, 77030, USA
- Department of Radiology, Department of Medicine, Weil Cornell Medicine, 1300 York Avenue, New York, NY, 10065, USA
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62
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Terada Y, Hoshino Y, Miura Y. Glycopolymers Mimicking GM1 Gangliosides: Cooperativity of Galactose and Neuraminic Acid for Cholera Toxin Recognition. Chem Asian J 2019; 14:1021-1027. [DOI: 10.1002/asia.201900053] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2019] [Revised: 02/21/2019] [Indexed: 01/17/2023]
Affiliation(s)
- Yuhei Terada
- Department of Chemical Systems and EngineeringKyushu University 744 Motooka Nishi-ku Fukuoka 819-0395 Japan
| | - Yu Hoshino
- Department of Chemical Systems and EngineeringKyushu University 744 Motooka Nishi-ku Fukuoka 819-0395 Japan
| | - Yoshiko Miura
- Department of Chemical Systems and EngineeringKyushu University 744 Motooka Nishi-ku Fukuoka 819-0395 Japan
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63
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Yang Z, Jiang S, Li F, Qiu Y, Gu J, Pettigrew RI, Ferrari M, Hamilton DJ, Li Z. Single‐Molecule Force Measurement Guides the Design of Multivalent Ligands with Picomolar Affinity. Angew Chem Int Ed Engl 2019. [DOI: 10.1002/ange.201814347] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Affiliation(s)
- Zhen Yang
- Center for BioenergeticsHouston Methodist Research Institute 6670 Bertner Avenue Houston TX 77030 USA
| | - Sheng Jiang
- State Key Laboratory of Natural MedicinesSchool of Pharmacy and School of EngineeringChina Pharmaceutical University Nanjing 21009 China
| | - Feng Li
- Center for BioenergeticsHouston Methodist Research Institute 6670 Bertner Avenue Houston TX 77030 USA
| | - Yatao Qiu
- State Key Laboratory of Natural MedicinesSchool of Pharmacy and School of EngineeringChina Pharmaceutical University Nanjing 21009 China
| | - Jianhua Gu
- Department of NanoMedicineHouston Methodist Research Institute USA
| | | | - Mauro Ferrari
- Department of NanoMedicineHouston Methodist Research Institute USA
- Department of RadiologyDepartment of MedicineWeil Cornell Medicine 1300 York Avenue New York NY 10065 USA
| | - Dale J. Hamilton
- Center for BioenergeticsHouston Methodist Research Institute 6670 Bertner Avenue Houston TX 77030 USA
- Department of RadiologyDepartment of MedicineWeil Cornell Medicine 1300 York Avenue New York NY 10065 USA
| | - Zheng Li
- Center for BioenergeticsHouston Methodist Research Institute 6670 Bertner Avenue Houston TX 77030 USA
- Department of RadiologyDepartment of MedicineWeil Cornell Medicine 1300 York Avenue New York NY 10065 USA
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64
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Feng X, Yu C, Feng F, Lu P, Chai Y, Li Q, Zhang D, Wang X, Yao L. Direct Measurement of Through-Bond Effects in Molecular Multivalent Interactions. Chemistry 2019; 25:2978-2982. [PMID: 30600858 DOI: 10.1002/chem.201805218] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2018] [Revised: 12/24/2018] [Indexed: 12/20/2022]
Abstract
Multivalent interactions occur throughout biology, and have a number of characteristics that monovalent interactions do not. However, it remains challenging to directly measure the binding force of molecular multivalent interactions and identify the mechanism of interactions. In this study, the specific interaction between bivalent aptamer and thrombin has been measured directly and quantitatively by force-induced remnant magnetization spectroscopy to investigate the binding force and through-bond effects of the multivalent interactions. The measured differential binding forces enable through-bond effects in thrombin-aptamer complexes to be identified, where aptamer binding at exosite II produces visible effects on their binding at exosite I and vice versa. This method might be suitable for practical applications in the design of high-performance ligands.
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Affiliation(s)
- Xueyan Feng
- Beijing National Laboratory for Molecular Science, Institute of Chemistry Chinese Academy of Sciences, CAS Research/Education Center for Excellence in Molecular Sciences, Beijing, 100190, P. R. China.,University of Chinese Academy of Science, Beijing, 100049, P. R. China
| | - Chanchan Yu
- Beijing National Laboratory for Molecular Science, Institute of Chemistry Chinese Academy of Sciences, CAS Research/Education Center for Excellence in Molecular Sciences, Beijing, 100190, P. R. China.,University of Chinese Academy of Science, Beijing, 100049, P. R. China
| | - Feng Feng
- Beijing National Laboratory for Molecular Science, Institute of Chemistry Chinese Academy of Sciences, CAS Research/Education Center for Excellence in Molecular Sciences, Beijing, 100190, P. R. China.,University of Chinese Academy of Science, Beijing, 100049, P. R. China
| | - Pan Lu
- Beijing National Laboratory for Molecular Science, Institute of Chemistry Chinese Academy of Sciences, CAS Research/Education Center for Excellence in Molecular Sciences, Beijing, 100190, P. R. China.,University of Chinese Academy of Science, Beijing, 100049, P. R. China
| | - Yahong Chai
- Beijing National Laboratory for Molecular Science, Institute of Chemistry Chinese Academy of Sciences, CAS Research/Education Center for Excellence in Molecular Sciences, Beijing, 100190, P. R. China.,University of Chinese Academy of Science, Beijing, 100049, P. R. China
| | - Qilong Li
- Beijing National Laboratory for Molecular Science, Institute of Chemistry Chinese Academy of Sciences, CAS Research/Education Center for Excellence in Molecular Sciences, Beijing, 100190, P. R. China.,University of Chinese Academy of Science, Beijing, 100049, P. R. China
| | - Di Zhang
- Beijing National Laboratory for Molecular Science, Institute of Chemistry Chinese Academy of Sciences, CAS Research/Education Center for Excellence in Molecular Sciences, Beijing, 100190, P. R. China.,University of Chinese Academy of Science, Beijing, 100049, P. R. China
| | - Xiuyu Wang
- Beijing National Laboratory for Molecular Science, Institute of Chemistry Chinese Academy of Sciences, CAS Research/Education Center for Excellence in Molecular Sciences, Beijing, 100190, P. R. China.,University of Chinese Academy of Science, Beijing, 100049, P. R. China
| | - Li Yao
- Beijing National Laboratory for Molecular Science, Institute of Chemistry Chinese Academy of Sciences, CAS Research/Education Center for Excellence in Molecular Sciences, Beijing, 100190, P. R. China.,University of Chinese Academy of Science, Beijing, 100049, P. R. China
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65
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Tseng WH, Li MC, Horng JC, Wang SK. Strategy and Effects of Polyproline Peptide Stapling by Copper(I)-Catalyzed Alkyne-Azide Cycloaddition Reaction. Chembiochem 2019; 20:153-158. [PMID: 30427573 DOI: 10.1002/cbic.201800575] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2018] [Indexed: 11/08/2022]
Abstract
Polyproline is a unique type of peptide that has a stable, robust, and well-defined helical structure in an aqueous environment. These features have allowed polyproline to be used as a nanosized scaffold for applications in chemical biology and related fields. To understand its structural properties and to expand the applications, this secondary structure was tested systematically by stapling the peptide at different locations with staples of various lengths. Using the efficient copper(I)-catalyzed alkyne-azide cycloaddition (CuAAC), we successfully prepared stapled polyproline and investigated the impact of this peptide macrocyclization through circular dichroism analysis. Whereas the stapling seems to have no significant effect on polyproline helix II (PPII) conformation in water, the location and the length of the staple affect the transformation of conformation in n-propanol. These results provide valuable information for future research using peptide stapling to manipulate polyproline conformation for various applications.
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Affiliation(s)
- Wen-Hsiu Tseng
- Department of Chemistry, National Tsing Hua University, 101, Sec. 2, Kuang-Fu Road, Hsinchu, 30013, Taiwan
| | - Meng-Che Li
- Department of Chemistry, National Tsing Hua University, 101, Sec. 2, Kuang-Fu Road, Hsinchu, 30013, Taiwan
| | - Jia-Cherng Horng
- Department of Chemistry, National Tsing Hua University, 101, Sec. 2, Kuang-Fu Road, Hsinchu, 30013, Taiwan.,Frontier Research Center on Fundamental and Applied Sciences of Matters, National Tsing Hua University, 101, Sec. 2, Kuang-Fu Road, Hsinchu, 30013, Taiwan
| | - Sheng-Kai Wang
- Department of Chemistry, National Tsing Hua University, 101, Sec. 2, Kuang-Fu Road, Hsinchu, 30013, Taiwan.,Frontier Research Center on Fundamental and Applied Sciences of Matters, National Tsing Hua University, 101, Sec. 2, Kuang-Fu Road, Hsinchu, 30013, Taiwan
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66
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Arsiwala A, Castro A, Frey S, Stathos M, Kane RS. Designing Multivalent Ligands to Control Biological Interactions: From Vaccines and Cellular Effectors to Targeted Drug Delivery. Chem Asian J 2019; 14:244-255. [DOI: 10.1002/asia.201801677] [Citation(s) in RCA: 23] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2018] [Indexed: 01/02/2023]
Affiliation(s)
- Ammar Arsiwala
- School of Chemical and Biomolecular Engineering; Georgia Institute of Technology; Atlanta Georgia- 30332 USA
| | - Ana Castro
- School of Chemical and Biomolecular Engineering; Georgia Institute of Technology; Atlanta Georgia- 30332 USA
| | - Steven Frey
- School of Chemical and Biomolecular Engineering; Georgia Institute of Technology; Atlanta Georgia- 30332 USA
| | - Mark Stathos
- School of Chemical and Biomolecular Engineering; Georgia Institute of Technology; Atlanta Georgia- 30332 USA
| | - Ravi S. Kane
- School of Chemical and Biomolecular Engineering; Georgia Institute of Technology; Atlanta Georgia- 30332 USA
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67
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Neal TA, Wang W, Zhiquan L, Peng R, Soni P, Xie H, Badjić JD. A Hexavalent Basket for Bottom‐Up Construction of Functional Soft Materials and Polyvalent Drugs through a “Click” Reaction. Chemistry 2018; 25:1242-1248. [PMID: 30466183 DOI: 10.1002/chem.201805246] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2018] [Revised: 11/19/2018] [Indexed: 12/14/2022]
Affiliation(s)
- Taylor A. Neal
- Department of Chemistry & Biochemistry The Ohio State University 100 West 18th Avenue 43210 Columbus Ohio USA
| | - Weikun Wang
- Department of Chemistry & Biochemistry The Ohio State University 100 West 18th Avenue 43210 Columbus Ohio USA
| | - Lei Zhiquan
- Department of Chemistry & Biochemistry The Ohio State University 100 West 18th Avenue 43210 Columbus Ohio USA
| | - Ruojing Peng
- Department of Chemistry & Biochemistry The Ohio State University 100 West 18th Avenue 43210 Columbus Ohio USA
| | - Priti Soni
- Department of Chemistry & Biochemistry The Ohio State University 100 West 18th Avenue 43210 Columbus Ohio USA
| | - Han Xie
- Department of Chemistry & Biochemistry The Ohio State University 100 West 18th Avenue 43210 Columbus Ohio USA
| | - Jovica D. Badjić
- Department of Chemistry & Biochemistry The Ohio State University 100 West 18th Avenue 43210 Columbus Ohio USA
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68
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Kiran P, Bhatia S, Lauster D, Aleksić S, Fleck C, Peric N, Maison W, Liese S, Keller BG, Herrmann A, Haag R. Exploring Rigid and Flexible Core Trivalent Sialosides for Influenza Virus Inhibition. Chemistry 2018; 24:19373-19385. [PMID: 30295350 PMCID: PMC6587447 DOI: 10.1002/chem.201804826] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2018] [Indexed: 12/25/2022]
Abstract
Herein, the chemical synthesis and binding analysis of functionalizable rigid and flexible core trivalent sialosides bearing oligoethylene glycol (OEG) spacers interacting with spike proteins of influenza A virus (IAV) X31 is described. Although the flexible Tris-based trivalent sialosides achieved micromolar binding constants, a trivalent binder based on a rigid adamantane core dominated flexible tripodal compounds with micromolar binding and hemagglutination inhibition constants. Simulation studies indicated increased conformational penalties for long OEG spacers. Using a systematic approach with molecular modeling and simulations as well as biophysical analysis, these findings emphasize on the importance of the scaffold rigidity and the challenges associated with the spacer length optimization.
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Affiliation(s)
- Pallavi Kiran
- Institut für Chemie und Biochemie Organische ChemieFreie Universität BerlinTakustr. 314195BerlinGermany
| | - Sumati Bhatia
- Institut für Chemie und Biochemie Organische ChemieFreie Universität BerlinTakustr. 314195BerlinGermany
| | - Daniel Lauster
- Institut für Biologie, Molekulare Biophysik, IRI Life SciencesHumboldt-Universität zu BerlinInvalidenstr. 4210115BerlinGermany
| | - Stevan Aleksić
- Institut für Chemie und Biochemie, Physikalische und Theoretische ChemieFreie Universität BerlinTakustr. 314195BerlinGermany
| | - Carsten Fleck
- Fachbereich ChemieInstitut für PharmazieUniversität HamburgBundesstr. 4520146HamburgGermany
| | - Natalija Peric
- Fachbereich ChemieInstitut für PharmazieUniversität HamburgBundesstr. 4520146HamburgGermany
| | - Wolfgang Maison
- Fachbereich ChemieInstitut für PharmazieUniversität HamburgBundesstr. 4520146HamburgGermany
| | - Susanne Liese
- Department of MathematicsUniversity of Oslo, P.O Box1053 Blinder0316OsloNorway
- Department of PhysicsFreie Universität BerlinArnimallee 1414195BerlinGermany
| | - Bettina G. Keller
- Institut für Chemie und Biochemie, Physikalische und Theoretische ChemieFreie Universität BerlinTakustr. 314195BerlinGermany
| | - Andreas Herrmann
- Institut für Biologie, Molekulare Biophysik, IRI Life SciencesHumboldt-Universität zu BerlinInvalidenstr. 4210115BerlinGermany
| | - Rainer Haag
- Institut für Chemie und Biochemie Organische ChemieFreie Universität BerlinTakustr. 314195BerlinGermany
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69
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Dubel N, Liese S, Scherz F, Seitz O. Untersuchungen zu Grenzen der Bivalenz mit DNA-basierter räumlicher Rasterung. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201810996] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Affiliation(s)
- Natali Dubel
- Institut für Chemie; Humboldt-Universität zu Berlin; Brook-Taylor-Straße 2 12489 Berlin Deutschland
| | - Susanne Liese
- Institut für Theoretische Physik; Freie Universität Berlin; Arnimallee 14 14195 Berlin Deutschland
| | - Franziska Scherz
- Institut für Chemie; Humboldt-Universität zu Berlin; Brook-Taylor-Straße 2 12489 Berlin Deutschland
| | - Oliver Seitz
- Institut für Chemie; Humboldt-Universität zu Berlin; Brook-Taylor-Straße 2 12489 Berlin Deutschland
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70
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Dubel N, Liese S, Scherz F, Seitz O. Exploring the Limits of Bivalency by DNA-Based Spatial Screening. Angew Chem Int Ed Engl 2018; 58:907-911. [DOI: 10.1002/anie.201810996] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2018] [Revised: 10/19/2018] [Indexed: 12/30/2022]
Affiliation(s)
- Natali Dubel
- Institute of Chemistry; Humboldt-Universität zu Berlin; Brook-Taylor-Str. 2 12489 Berlin Germany
| | - Susanne Liese
- Institute for Theoretical Physics; Free University Berlin; Arnimallee 14 14195 Berlin Germany
| | - Franziska Scherz
- Institute of Chemistry; Humboldt-Universität zu Berlin; Brook-Taylor-Str. 2 12489 Berlin Germany
| | - Oliver Seitz
- Institute of Chemistry; Humboldt-Universität zu Berlin; Brook-Taylor-Str. 2 12489 Berlin Germany
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71
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Dey A, Biradha K. Photochemical Reactions in Supramolecular Assemblies of Gels: Dimerizations and Polymerizations via Pericyclic Reactions. Isr J Chem 2018. [DOI: 10.1002/ijch.201800137] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Affiliation(s)
- Avishek Dey
- Department of ChemistryIndian Institute of Technology Kharagpur Kharagpur- 721302 India
| | - Kumar Biradha
- Department of ChemistryIndian Institute of Technology Kharagpur Kharagpur- 721302 India
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72
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Lou J, Zhang X, Best MD. Lipid Switches: Stimuli-Responsive Liposomes through Conformational Isomerism Driven by Molecular Recognition. Chemistry 2018; 25:20-25. [PMID: 30133869 DOI: 10.1002/chem.201803389] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2018] [Revised: 08/21/2018] [Indexed: 11/10/2022]
Abstract
Advancements in the field of liposomal drug carriers have culminated in greatly improved delivery properties. An important aspect of this work entails development of designer liposomes for release of contents triggered by environmental changes. The majority of these systems are driven by chemical reactions in the presence of different stimuli. However, a promising new paradigm instead focuses on molecular recognition events as the impetus for content release. In certain cases, these platforms exploit synthetic lipid switches designed to undergo conformational changes upon binding to target ions or molecules that perturb membrane assembly, thereby triggering cargo release. Examples of this approach reported thus far showcase how rational design of lipid switches can result in dramatic changes in lipid assembly properties. These strategies show great promise for opening up new pathophysiological stimuli that can be harnessed for programmed content release in drug delivery applications.
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Affiliation(s)
- Jinchao Lou
- Department of Chemistry, University of Tennessee, 1420 Circle Drive, Knoxville, TN, 37996, USA
| | - Xiaoyu Zhang
- Department of Chemistry, University of Tennessee, 1420 Circle Drive, Knoxville, TN, 37996, USA
| | - Michael D Best
- Department of Chemistry, University of Tennessee, 1420 Circle Drive, Knoxville, TN, 37996, USA
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73
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Choi H, Jung Y. Applying Multivalent Biomolecular Interactions for Biosensors. Chemistry 2018; 24:19103-19109. [DOI: 10.1002/chem.201801408] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2018] [Revised: 06/27/2018] [Indexed: 12/29/2022]
Affiliation(s)
- Hyeongjoo Choi
- Department of ChemistryKorea Advanced Institute of Science and Technology Daejeon 34141 Korea
| | - Yongwon Jung
- Department of ChemistryKorea Advanced Institute of Science and Technology Daejeon 34141 Korea
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74
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Yoon HR, Choi H, Choi YA, Kim JA, Jung J, Kim HM, Jung Y. Fabrication of Oligomeric Avidin Scaffolds for Valency-Controlled Surface Display of Functional Ligands. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201805749] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Hye Ryeon Yoon
- Department of Chemistry; Korea Advanced Institute of Science and Technology (KAIST); Daejeon 34141 Korea
| | - Hyeongjoo Choi
- Department of Chemistry; Korea Advanced Institute of Science and Technology (KAIST); Daejeon 34141 Korea
| | - Yoon-Aa Choi
- Bionano Health Guard Research Center; Korea Research Institute of Bioscience and Biotechnology (KRIBB); Daejeon 34141 Korea
| | - Jung A. Kim
- Graduate School of Nanoscience and Technology; KAIST; Korea
| | - Juyeon Jung
- Bionano Health Guard Research Center; Korea Research Institute of Bioscience and Biotechnology (KRIBB); Daejeon 34141 Korea
- Hazards Monitoring Bionano Research Center; KRIBB; Daejeon 34141 Korea
- Nanobiotechnology Major; KRIBB School of Engineering; UST; Daejeon 34113 Korea
| | - Ho Min Kim
- Graduate School of Medical Science and Engineering; KAIST; Korea
| | - Yongwon Jung
- Department of Chemistry; Korea Advanced Institute of Science and Technology (KAIST); Daejeon 34141 Korea
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75
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Lan L, Zheng B, Zhang Y, Hu Y. Rapid and effective removal of As(III) and As(V) using spore@Ti 4+ microspheres. CHEMOSPHERE 2018; 206:742-749. [PMID: 29793066 DOI: 10.1016/j.chemosphere.2018.05.089] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/29/2018] [Revised: 05/11/2018] [Accepted: 05/15/2018] [Indexed: 05/27/2023]
Abstract
Removing arsenic from aquatic environments has become an urgent problem worldwide. In this study, Ti4+- loaded bacterial spore were adopted as a novel adsorbent (spore@Ti4+ microspheres) for the adsorption efficient removal of arsenite (As(III)) and arsenate (As(V)). The developed adsorbents were characterized using transmission electron microscopy (TEM), scanning electron microscopy (SEM), Fourier transform infrared spectra (FTIR) and X-ray photoelectron spectroscopy (XPS). Results indicated that the adsorption kinetics was well described by a pseudo-second-order kinetic model, and the adsorption process rapidly achieved equilibrium within 15 min at pH 7.0. The adsorption mechanism was also investigated. The maximum adsorption capacities for As(III) and As(V) were 97.26 mg g-1 and 137.01 mg g-1, respectively, based on the isothermal studies. These properties suggest that spore@Ti4+ microspheres can be potentially applied in water treatment.
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Affiliation(s)
- Lijuan Lan
- State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan 430070, China; College of Life Science and Technology, Huazhong Agricultural University, Wuhan 430070, China
| | - Bingjie Zheng
- State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan 430070, China; College of Life Science and Technology, Huazhong Agricultural University, Wuhan 430070, China
| | - Yao Zhang
- State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan 430070, China; College of Life Science and Technology, Huazhong Agricultural University, Wuhan 430070, China
| | - Yonggang Hu
- State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan 430070, China; College of Life Science and Technology, Huazhong Agricultural University, Wuhan 430070, China.
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76
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Yoon HR, Choi H, Choi YA, Kim JA, Jung J, Kim HM, Jung Y. Fabrication of Oligomeric Avidin Scaffolds for Valency-Controlled Surface Display of Functional Ligands. Angew Chem Int Ed Engl 2018; 57:12410-12414. [DOI: 10.1002/anie.201805749] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2018] [Revised: 07/14/2018] [Indexed: 02/06/2023]
Affiliation(s)
- Hye Ryeon Yoon
- Department of Chemistry; Korea Advanced Institute of Science and Technology (KAIST); Daejeon 34141 Korea
| | - Hyeongjoo Choi
- Department of Chemistry; Korea Advanced Institute of Science and Technology (KAIST); Daejeon 34141 Korea
| | - Yoon-Aa Choi
- Bionano Health Guard Research Center; Korea Research Institute of Bioscience and Biotechnology (KRIBB); Daejeon 34141 Korea
| | - Jung A. Kim
- Graduate School of Nanoscience and Technology; KAIST; Korea
| | - Juyeon Jung
- Bionano Health Guard Research Center; Korea Research Institute of Bioscience and Biotechnology (KRIBB); Daejeon 34141 Korea
- Hazards Monitoring Bionano Research Center; KRIBB; Daejeon 34141 Korea
- Nanobiotechnology Major; KRIBB School of Engineering; UST; Daejeon 34113 Korea
| | - Ho Min Kim
- Graduate School of Medical Science and Engineering; KAIST; Korea
| | - Yongwon Jung
- Department of Chemistry; Korea Advanced Institute of Science and Technology (KAIST); Daejeon 34141 Korea
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77
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Nishitani S, Maekawa Y, Sakata T. Understanding the Molecular Structure of the Sialic Acid-Phenylboronic Acid Complex by using a Combined NMR Spectroscopy and DFT Study: Toward Sialic Acid Detection at Cell Membranes. ChemistryOpen 2018; 7:513-519. [PMID: 30003005 PMCID: PMC6031860 DOI: 10.1002/open.201800071] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2018] [Indexed: 12/03/2022] Open
Abstract
The origin of the unusually high stability of the sialic acid (SA) and phenylboronic acid (PBA) complex was investigated by a combined nuclear magnetic resonance (NMR) spectroscopy and density functional theory (DFT) study. SA is a glycan-terminating monosaccharide, and its importance as a clinical target has long been recognized. Inspired by the fact that the binding properties of SA-PBA complexation are anomalously high relative to those of typical monosaccharides, great effort has been made to build a clinical platform with the use of PBA as a SA-selective receptor. Although a number of applications have been reported in recent years, the ability of PBA to recognize SA-terminating surface glycans selectively is still unclear, because high-affinity SA-PBA complexation might not occur in a physiological environment. In particular, different forms of SA (α- and β-pyranose) were not considered in detail. To answer this question, the combined NMR spectroscopy/DFT study revealed that the advantageous binding properties of the SA-PBA complex arise from ester bonding involving the α-carboxylate moieties (C1 and C2) of β-SA but not α-SA. Moreover, the facts that the C2 atom is blocked by a glycoside bond in a physiological environment and that α-SA basically exists on membrane-bound glycans in a physiological environment lead to the conclusion that PBA cannot selectively recognize the SA unit to discriminate specific types of cells. Our results have a significant impact on the field of SA-based cell recognition.
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Affiliation(s)
- Shoichi Nishitani
- Department of Materials EngineeringGraduate School of EngineeringThe University of Tokyo7-3-1 Hongo, Bunkyo-kuTokyo113–8656Japan
| | - Yuki Maekawa
- Department of Materials EngineeringGraduate School of EngineeringThe University of Tokyo7-3-1 Hongo, Bunkyo-kuTokyo113–8656Japan
| | - Toshiya Sakata
- Department of Materials EngineeringGraduate School of EngineeringThe University of Tokyo7-3-1 Hongo, Bunkyo-kuTokyo113–8656Japan
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78
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Drożdż W, Walczak A, Bessin Y, Gervais V, Cao XY, Lehn JM, Ulrich S, Stefankiewicz AR. Multivalent Metallosupramolecular Assemblies as Effective DNA Binding Agents. Chemistry 2018; 24:10802-10811. [DOI: 10.1002/chem.201801552] [Citation(s) in RCA: 27] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2018] [Indexed: 12/12/2022]
Affiliation(s)
- Wojciech Drożdż
- Faculty of Chemistry; Adam Mickiewicz University; Umultowska 89b 61-614 Poznań Poland
- Center for Advanced Technologies; Adam Mickiewicz University; Umultowska 89c 61-614 Poznań Poland
| | - Anna Walczak
- Faculty of Chemistry; Adam Mickiewicz University; Umultowska 89b 61-614 Poznań Poland
- Center for Advanced Technologies; Adam Mickiewicz University; Umultowska 89c 61-614 Poznań Poland
| | - Yannick Bessin
- IBMM, UMR 5247; Université de Montpellier; CNRS; ENSCM, UM; Montpellier France
| | - Virginie Gervais
- IPBS (Institut de Pharmacologie et de Biologie Structurale); Université de Toulouse; CNRS; UPS; 205 route de Narbonne 31077 Toulouse France
| | - Xiao-Yu Cao
- Laboratoire de Chimie Supramoléculaire; Institut de Science et d'Ingénierie Supramoléculaires (ISIS); UMR 7006; CNRS; Université de Strasbourg; 8 allée Gaspard Monge 67000 Strasbourg France
| | - Jean-Marie Lehn
- Laboratoire de Chimie Supramoléculaire; Institut de Science et d'Ingénierie Supramoléculaires (ISIS); UMR 7006; CNRS; Université de Strasbourg; 8 allée Gaspard Monge 67000 Strasbourg France
| | - Sébastien Ulrich
- IBMM, UMR 5247; Université de Montpellier; CNRS; ENSCM, UM; Montpellier France
| | - Artur R. Stefankiewicz
- Faculty of Chemistry; Adam Mickiewicz University; Umultowska 89b 61-614 Poznań Poland
- Center for Advanced Technologies; Adam Mickiewicz University; Umultowska 89c 61-614 Poznań Poland
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79
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Liu B, Huang Z, Liu J. Polyvalent Spherical Nucleic Acids for Universal Display of Functional DNA with Ultrahigh Stability. Angew Chem Int Ed Engl 2018; 57:9439-9442. [PMID: 29863751 DOI: 10.1002/anie.201805532] [Citation(s) in RCA: 45] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2018] [Indexed: 02/03/2023]
Abstract
For nanomaterials that are difficult to functionalize by covalent attachment of DNA, we herein communicate a general method taking advantage of the high avidity of polyvalent binding and the 3D structure of densely functionalized spherical nucleic acids (SNAs). Using DNA-functionalized gold nanoparticles, simple mixing leads to the formation of highly stable conjugates on 11 different materials including metals, metal oxides, metal-organic frameworks, transition-metal dichalcogenides, nanocarbons, and polymers. The adsorption affinity of SNAs can be over thousand-fold higher than that of free DNA of the same sequence, and practically irreversible conjugates are formed withstanding various denaturing agents. The surface attachment and molecular recognition functions of DNA are spatially separated, showing a key advantage of SNAs. The functionalized materials possess the properties of both the substrate and the SNA, allowing specific DNA hybridization in buffer and in serum.
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Affiliation(s)
- Biwu Liu
- Department of Chemistry, Waterloo Institute for Nanotechnology, University of Waterloo, Waterloo, Ontario, N2L 3G1, Canada
| | - Zhicheng Huang
- Department of Chemistry, Waterloo Institute for Nanotechnology, University of Waterloo, Waterloo, Ontario, N2L 3G1, Canada
| | - Juewen Liu
- Department of Chemistry, Waterloo Institute for Nanotechnology, University of Waterloo, Waterloo, Ontario, N2L 3G1, Canada
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80
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Liu B, Huang Z, Liu J. Polyvalent Spherical Nucleic Acids for Universal Display of Functional DNA with Ultrahigh Stability. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201805532] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Affiliation(s)
- Biwu Liu
- Department of Chemistry, Waterloo Institute for Nanotechnology; University of Waterloo; Waterloo Ontario N2L 3G1 Canada
| | - Zhicheng Huang
- Department of Chemistry, Waterloo Institute for Nanotechnology; University of Waterloo; Waterloo Ontario N2L 3G1 Canada
| | - Juewen Liu
- Department of Chemistry, Waterloo Institute for Nanotechnology; University of Waterloo; Waterloo Ontario N2L 3G1 Canada
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81
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Ju G, Cheng M, Guo F, Zhang Q, Shi F. Elasticity-Dependent Fast Underwater Adhesion Demonstrated by Macroscopic Supramolecular Assembly. Angew Chem Int Ed Engl 2018; 57:8963-8967. [DOI: 10.1002/anie.201803632] [Citation(s) in RCA: 54] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2018] [Indexed: 01/31/2023]
Affiliation(s)
- Guannan Ju
- State Key Laboratory of Chemical Resource Engineering & Beijing Laboratory of Biomedical Materials & Beijing Advanced Innovation Center for Soft Matter Science and Engineering; Beijing University of Chemical Technology; Beijing 100029 China
| | - Mengjiao Cheng
- State Key Laboratory of Chemical Resource Engineering & Beijing Laboratory of Biomedical Materials & Beijing Advanced Innovation Center for Soft Matter Science and Engineering; Beijing University of Chemical Technology; Beijing 100029 China
| | - Fengli Guo
- State Key Laboratory of Chemical Resource Engineering & Beijing Laboratory of Biomedical Materials & Beijing Advanced Innovation Center for Soft Matter Science and Engineering; Beijing University of Chemical Technology; Beijing 100029 China
| | - Qian Zhang
- State Key Laboratory of Chemical Resource Engineering & Beijing Laboratory of Biomedical Materials & Beijing Advanced Innovation Center for Soft Matter Science and Engineering; Beijing University of Chemical Technology; Beijing 100029 China
| | - Feng Shi
- State Key Laboratory of Chemical Resource Engineering & Beijing Laboratory of Biomedical Materials & Beijing Advanced Innovation Center for Soft Matter Science and Engineering; Beijing University of Chemical Technology; Beijing 100029 China
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82
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Ju G, Cheng M, Guo F, Zhang Q, Shi F. Elasticity-Dependent Fast Underwater Adhesion Demonstrated by Macroscopic Supramolecular Assembly. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201803632] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Affiliation(s)
- Guannan Ju
- State Key Laboratory of Chemical Resource Engineering & Beijing Laboratory of Biomedical Materials & Beijing Advanced Innovation Center for Soft Matter Science and Engineering; Beijing University of Chemical Technology; Beijing 100029 China
| | - Mengjiao Cheng
- State Key Laboratory of Chemical Resource Engineering & Beijing Laboratory of Biomedical Materials & Beijing Advanced Innovation Center for Soft Matter Science and Engineering; Beijing University of Chemical Technology; Beijing 100029 China
| | - Fengli Guo
- State Key Laboratory of Chemical Resource Engineering & Beijing Laboratory of Biomedical Materials & Beijing Advanced Innovation Center for Soft Matter Science and Engineering; Beijing University of Chemical Technology; Beijing 100029 China
| | - Qian Zhang
- State Key Laboratory of Chemical Resource Engineering & Beijing Laboratory of Biomedical Materials & Beijing Advanced Innovation Center for Soft Matter Science and Engineering; Beijing University of Chemical Technology; Beijing 100029 China
| | - Feng Shi
- State Key Laboratory of Chemical Resource Engineering & Beijing Laboratory of Biomedical Materials & Beijing Advanced Innovation Center for Soft Matter Science and Engineering; Beijing University of Chemical Technology; Beijing 100029 China
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83
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Straßburger D, Stergiou N, Urschbach M, Yurugi H, Spitzer D, Schollmeyer D, Schmitt E, Besenius P. Mannose-Decorated Multicomponent Supramolecular Polymers Trigger Effective Uptake into Antigen-Presenting Cells. Chembiochem 2018; 19:912-916. [PMID: 29486092 DOI: 10.1002/cbic.201800114] [Citation(s) in RCA: 31] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2018] [Indexed: 11/05/2022]
Abstract
A modular route to prepare functional self-assembling dendritic peptide amphiphiles decorated with mannosides, to effectively target antigen-presenting cells, such as macrophages, is reported. The monomeric building blocks were equipped with tetra(ethylene glycol)s (TEGs) or labeled with a Cy3 fluorescent probe. Experiments on the uptake of the multifunctional supramolecular particles into murine macrophages (Mφs) were monitored by confocal microscopy and fluorescence-activated cell sorting. Mannose-decorated supramolecular polymers trigger a significantly higher cellular uptake and distribution, relative to TEG carrying bare polymers. No cytotoxicity or negative impact on cytokine production of the treated Mφs was observed, which emphasized their biocompatibility. The modular nature of the multicomponent supramolecular polymer coassembly protocol is a promising platform to develop fully synthetic multifunctional vaccines, for example, in cancer immunotherapy.
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Affiliation(s)
- David Straßburger
- Institute of Organic Chemistry, Johannes Gutenberg-University Mainz, Duesbergweg 10-14, 55128, Mainz, Germany
| | - Natascha Stergiou
- Institute of Immunology, University Medical Center Mainz, Langenbeckstrasse 1, Gebäude 708, 55131, Mainz, Germany
| | - Moritz Urschbach
- Institute of Organic Chemistry, Johannes Gutenberg-University Mainz, Duesbergweg 10-14, 55128, Mainz, Germany
| | - Hajime Yurugi
- Molecular Signaling Unit-FZI, Research Center for Immune Therapy, University Medical Center Mainz, Langenbeckstrasse 1, Gebäude 708, 55131, Mainz, Germany
| | - Daniel Spitzer
- Institute of Organic Chemistry, Johannes Gutenberg-University Mainz, Duesbergweg 10-14, 55128, Mainz, Germany
| | - Dieter Schollmeyer
- Institute of Organic Chemistry, Johannes Gutenberg-University Mainz, Duesbergweg 10-14, 55128, Mainz, Germany
| | - Edgar Schmitt
- Institute of Immunology, University Medical Center Mainz, Langenbeckstrasse 1, Gebäude 708, 55131, Mainz, Germany
| | - Pol Besenius
- Institute of Organic Chemistry, Johannes Gutenberg-University Mainz, Duesbergweg 10-14, 55128, Mainz, Germany
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84
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Shi P, Zhao N, Lai J, Coyne J, Gaddes ER, Wang Y. Polyvalent Display of Biomolecules on Live Cells. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201712596] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Affiliation(s)
- Peng Shi
- Department of Biomedical Engineering The Pennsylvania State University University Park PA 16802 USA
| | - Nan Zhao
- Department of Biomedical Engineering The Pennsylvania State University University Park PA 16802 USA
| | - Jinping Lai
- Department of Biomedical Engineering The Pennsylvania State University University Park PA 16802 USA
| | - James Coyne
- Department of Biomedical Engineering The Pennsylvania State University University Park PA 16802 USA
| | - Erin R. Gaddes
- Department of Biomedical Engineering The Pennsylvania State University University Park PA 16802 USA
| | - Yong Wang
- Department of Biomedical Engineering The Pennsylvania State University University Park PA 16802 USA
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85
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Shi P, Zhao N, Lai J, Coyne J, Gaddes ER, Wang Y. Polyvalent Display of Biomolecules on Live Cells. Angew Chem Int Ed Engl 2018; 57:6800-6804. [PMID: 29380466 DOI: 10.1002/anie.201712596] [Citation(s) in RCA: 45] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2017] [Indexed: 11/11/2022]
Abstract
Surface display of biomolecules on live cells offers new opportunities to treat human diseases and perform basic studies. Existing methods are primarily focused on monovalent functionalization, that is, the display of single biomolecules across the cell surface. Here we show that the surface of live cells can be functionalized to display polyvalent biomolecular structures through two-step reactions under physiological conditions. This polyvalent functionalization enables the cell surface to recognize the microenvironment one order of magnitude more effectively than with monovalent functionalization. Thus, polyvalent display of biomolecules on live cells holds great potential for various biological and biomedical applications.
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Affiliation(s)
- Peng Shi
- Department of Biomedical Engineering, The Pennsylvania State University, University Park, PA, 16802, USA
| | - Nan Zhao
- Department of Biomedical Engineering, The Pennsylvania State University, University Park, PA, 16802, USA
| | - Jinping Lai
- Department of Biomedical Engineering, The Pennsylvania State University, University Park, PA, 16802, USA
| | - James Coyne
- Department of Biomedical Engineering, The Pennsylvania State University, University Park, PA, 16802, USA
| | - Erin R Gaddes
- Department of Biomedical Engineering, The Pennsylvania State University, University Park, PA, 16802, USA
| | - Yong Wang
- Department of Biomedical Engineering, The Pennsylvania State University, University Park, PA, 16802, USA
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86
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Nierengarten JF, Schneider JP, Trinh TMN, Joosten A, Holler M, Lepage ML, Bodlenner A, García-Moreno MI, Ortiz Mellet C, Compain P. Giant Glycosidase Inhibitors: First- and Second-Generation Fullerodendrimers with a Dense Iminosugar Shell. Chemistry 2018; 24:2483-2492. [DOI: 10.1002/chem.201705600] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2017] [Indexed: 02/06/2023]
Affiliation(s)
- Jean-François Nierengarten
- Laboratoire de Chimie des Matériaux Moléculaires; Université de Strasbourg et CNRS (UMR 7509); Ecole Européenne de Chimie, Polymères et Matériaux; 25 rue Becquerel 67087 Strasbourg Cedex 2 France
| | - Jérémy P. Schneider
- Laboratoire de Synthèse Organique et Molécules Bioactives; Université de Strasbourg et CNRS (UMR 7509); Ecole Européenne de Chimie, Polymères et Matériaux; 25 rue Becquerel 67087 Strasbourg Cedex 2 France
| | - Thi Minh Nguyet Trinh
- Laboratoire de Chimie des Matériaux Moléculaires; Université de Strasbourg et CNRS (UMR 7509); Ecole Européenne de Chimie, Polymères et Matériaux; 25 rue Becquerel 67087 Strasbourg Cedex 2 France
| | - Antoine Joosten
- Laboratoire de Synthèse Organique et Molécules Bioactives; Université de Strasbourg et CNRS (UMR 7509); Ecole Européenne de Chimie, Polymères et Matériaux; 25 rue Becquerel 67087 Strasbourg Cedex 2 France
| | - Michel Holler
- Laboratoire de Chimie des Matériaux Moléculaires; Université de Strasbourg et CNRS (UMR 7509); Ecole Européenne de Chimie, Polymères et Matériaux; 25 rue Becquerel 67087 Strasbourg Cedex 2 France
| | - Mathieu L. Lepage
- Laboratoire de Synthèse Organique et Molécules Bioactives; Université de Strasbourg et CNRS (UMR 7509); Ecole Européenne de Chimie, Polymères et Matériaux; 25 rue Becquerel 67087 Strasbourg Cedex 2 France
| | - Anne Bodlenner
- Laboratoire de Synthèse Organique et Molécules Bioactives; Université de Strasbourg et CNRS (UMR 7509); Ecole Européenne de Chimie, Polymères et Matériaux; 25 rue Becquerel 67087 Strasbourg Cedex 2 France
| | - M. Isabel García-Moreno
- Departamento de Química Orgánica; Facultad de Química; Universidad de Sevilla; Profesor García González 1 41012 Sevilla Spain
| | - Carmen Ortiz Mellet
- Departamento de Química Orgánica; Facultad de Química; Universidad de Sevilla; Profesor García González 1 41012 Sevilla Spain
| | - Philippe Compain
- Laboratoire de Synthèse Organique et Molécules Bioactives; Université de Strasbourg et CNRS (UMR 7509); Ecole Européenne de Chimie, Polymères et Matériaux; 25 rue Becquerel 67087 Strasbourg Cedex 2 France
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87
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Drożdż W, Bessin Y, Gervais V, Cao XY, Lehn JM, Stefankiewicz AR, Ulrich S. Switching Multivalent DNA Complexation using Metal-Controlled Cationic Supramolecular Self-Assemblies. Chemistry 2018; 24:1518-1521. [DOI: 10.1002/chem.201705630] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2017] [Indexed: 12/19/2022]
Affiliation(s)
- Wojciech Drożdż
- Faculty of Chemistry; Adam Mickiewicz University; Umultowska 89b 61-614 Poznań Poland
- Centre for Advanced Technologies; Adam Mickiewicz University; Umultowska 89c 61-614 Poznań Poland
| | - Yannick Bessin
- Institut des Biomolécules Max Mousseron (IBMM), UMR 5247, CNRS, Université de Montpellier; Ecole Nationale Supérieure de Chimie de Montpellier; 8 rue de l'Ecole Normale 34296 Montpellier cedex 5 France
| | - Virginie Gervais
- CNRS; Institut de Pharmacologie et de Biologie Structurale (IPBS); Université de Toulouse, UPS; 205 route de Narbonne 31077 Toulouse France
| | - Xiao-Yu Cao
- Laboratoire de Chimie Supramoléculaire, Institut de Science et d'Ingénierie Supramoléculaires (ISIS), UMR 7006, CNRS; Université de Strasbourg; 8 allée Gaspard Monge 67000 Strasbourg France
| | - Jean-Marie Lehn
- Laboratoire de Chimie Supramoléculaire, Institut de Science et d'Ingénierie Supramoléculaires (ISIS), UMR 7006, CNRS; Université de Strasbourg; 8 allée Gaspard Monge 67000 Strasbourg France
| | - Artur R. Stefankiewicz
- Faculty of Chemistry; Adam Mickiewicz University; Umultowska 89b 61-614 Poznań Poland
- Centre for Advanced Technologies; Adam Mickiewicz University; Umultowska 89c 61-614 Poznań Poland
| | - Sébastien Ulrich
- Institut des Biomolécules Max Mousseron (IBMM), UMR 5247, CNRS, Université de Montpellier; Ecole Nationale Supérieure de Chimie de Montpellier; 8 rue de l'Ecole Normale 34296 Montpellier cedex 5 France
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88
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Baier M, Giesler M, Hartmann L. Split-and-Combine Approach Towards Branched Precision Glycomacromolecules and Their Lectin Binding Behavior. Chemistry 2018; 24:1619-1630. [DOI: 10.1002/chem.201704179] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2017] [Indexed: 12/18/2022]
Affiliation(s)
- Mischa Baier
- Institute of Organic and Macromolecular Chemistry; Heinrich-Heine-University Duesseldorf; Universitaetsstraße 1 40225 Duesseldorf Germany
| | - Markus Giesler
- Institute of Organic and Macromolecular Chemistry; Heinrich-Heine-University Duesseldorf; Universitaetsstraße 1 40225 Duesseldorf Germany
| | - Laura Hartmann
- Institute of Organic and Macromolecular Chemistry; Heinrich-Heine-University Duesseldorf; Universitaetsstraße 1 40225 Duesseldorf Germany
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89
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Zhang X, Yao W, Xu X, Sun H, Zhao J, Meng X, Wu M, Li Z. Synthesis of Fucosylated Chondroitin Sulfate Glycoclusters: A Robust Route to New Anticoagulant Agents. Chemistry 2017; 24:1694-1700. [PMID: 29131431 DOI: 10.1002/chem.201705177] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/01/2017] [Indexed: 12/15/2022]
Affiliation(s)
- Xiao Zhang
- State Key Laboratory of Natural and Biomimetic Drugs, Department of Chemical Biology, School of Pharmaceutical Sciences, Peking University, Beijing, 100191, P.R. China
| | - Wang Yao
- State Key Laboratory of Natural and Biomimetic Drugs, Department of Chemical Biology, School of Pharmaceutical Sciences, Peking University, Beijing, 100191, P.R. China
| | - Xiaojiang Xu
- State Key Laboratory of Natural and Biomimetic Drugs, Department of Chemical Biology, School of Pharmaceutical Sciences, Peking University, Beijing, 100191, P.R. China
| | - Huifang Sun
- State Key Laboratory of Phytochemistry and Plant Resources in West China, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, P.R. China
| | - Jinhua Zhao
- State Key Laboratory of Phytochemistry and Plant Resources in West China, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, P.R. China
| | - Xiangbao Meng
- State Key Laboratory of Natural and Biomimetic Drugs, Department of Chemical Biology, School of Pharmaceutical Sciences, Peking University, Beijing, 100191, P.R. China
| | - Mingyi Wu
- State Key Laboratory of Phytochemistry and Plant Resources in West China, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, P.R. China
| | - Zhongjun Li
- State Key Laboratory of Natural and Biomimetic Drugs, Department of Chemical Biology, School of Pharmaceutical Sciences, Peking University, Beijing, 100191, P.R. China
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90
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Zhou Y, Huang Z, Yang R, Liu J. Selection and Screening of DNA Aptamers for Inorganic Nanomaterials. Chemistry 2017; 24:2525-2532. [PMID: 29205597 DOI: 10.1002/chem.201704600] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2017] [Indexed: 11/10/2022]
Abstract
Searching for DNA sequences that can strongly and selectively bind to inorganic surfaces is a long-standing topic in bionanotechnology, analytical chemistry and biointerface research. This can be achieved either by aptamer selection starting with a very large library of ≈1014 random DNA sequences, or by careful screening of a much smaller library (usually from a few to a few hundred) with rationally designed sequences. Unlike typical molecular targets, inorganic surfaces often have quite strong DNA adsorption affinities due to polyvalent binding and even chemical interactions. This leads to a very high background binding making aptamer selection difficult. Screening, on the other hand, can be designed to compare relative binding affinities of different DNA sequences and could be more appropriate for inorganic surfaces. The resulting sequences have been used for DNA-directed assembly, sorting of carbon nanotubes, and DNA-controlled growth of inorganic nanomaterials. It was recently discovered that poly-cytosine (C) DNA can strongly bind to a diverse range of nanomaterials including nanocarbons (graphene oxide and carbon nanotubes), various metal oxides and transition-metal dichalcogenides. In this Concept article, we articulate the need for screening and potential artifacts associated with traditional aptamer selection methods for inorganic surfaces. Representative examples of application are discussed, and a few future research opportunities are proposed towards the end of this article.
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Affiliation(s)
- Yibo Zhou
- School of Chemistry and Biological Engineering, Changsha University of Science and Technology, Changsha, 410114, P. R. China
| | - Zhicheng Huang
- Department of Chemistry, Waterloo Institute for Nanotechnology, University of Waterloo, Waterloo, Ontario, N2L 3G1, Canada
| | - Ronghua Yang
- School of Chemistry and Biological Engineering, Changsha University of Science and Technology, Changsha, 410114, P. R. China
| | - Juewen Liu
- School of Chemistry and Biological Engineering, Changsha University of Science and Technology, Changsha, 410114, P. R. China.,Department of Chemistry, Waterloo Institute for Nanotechnology, University of Waterloo, Waterloo, Ontario, N2L 3G1, Canada
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91
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Lee JM, Hwang A, Choi H, Jo Y, Kim B, Kang T, Jung Y. A Multivalent Structure-Specific RNA Binder with Extremely Stable Target Binding but Reduced Interaction with Nonspecific RNAs. Angew Chem Int Ed Engl 2017; 56:15998-16002. [DOI: 10.1002/anie.201709153] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2017] [Revised: 10/01/2017] [Indexed: 01/08/2023]
Affiliation(s)
- Jeong Min Lee
- Department of Chemistry; Korea Advanced Institute of Science and Technology; Daejeon 34141 Korea
| | - Ahreum Hwang
- Department of Chemistry; Korea Advanced Institute of Science and Technology; Daejeon 34141 Korea
- Hazards Monitoring Bionano Research Center; Korea Research Institute of Bioscience and Biotechnology (KRIBB); Daejeon 34141 Korea
| | - Hyeongjoo Choi
- Department of Chemistry; Korea Advanced Institute of Science and Technology; Daejeon 34141 Korea
| | - Yongsang Jo
- Department of Chemistry; Korea Advanced Institute of Science and Technology; Daejeon 34141 Korea
| | - Bongsoo Kim
- Department of Chemistry; Korea Advanced Institute of Science and Technology; Daejeon 34141 Korea
| | - Taejoon Kang
- Hazards Monitoring Bionano Research Center; Korea Research Institute of Bioscience and Biotechnology (KRIBB); Daejeon 34141 Korea
- BioNano Health Guard Research Center, KRIBB, Daejeon 34141 (Korea); Department of Nanobiotechnology; KRIBB School of Biotechnology, UST; Daejeon 34113 Korea
| | - Yongwon Jung
- Department of Chemistry; Korea Advanced Institute of Science and Technology; Daejeon 34141 Korea
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92
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Lee JM, Hwang A, Choi H, Jo Y, Kim B, Kang T, Jung Y. A Multivalent Structure-Specific RNA Binder with Extremely Stable Target Binding but Reduced Interaction with Nonspecific RNAs. Angew Chem Int Ed Engl 2017. [DOI: 10.1002/ange.201709153] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Affiliation(s)
- Jeong Min Lee
- Department of Chemistry; Korea Advanced Institute of Science and Technology; Daejeon 34141 Korea
| | - Ahreum Hwang
- Department of Chemistry; Korea Advanced Institute of Science and Technology; Daejeon 34141 Korea
- Hazards Monitoring Bionano Research Center; Korea Research Institute of Bioscience and Biotechnology (KRIBB); Daejeon 34141 Korea
| | - Hyeongjoo Choi
- Department of Chemistry; Korea Advanced Institute of Science and Technology; Daejeon 34141 Korea
| | - Yongsang Jo
- Department of Chemistry; Korea Advanced Institute of Science and Technology; Daejeon 34141 Korea
| | - Bongsoo Kim
- Department of Chemistry; Korea Advanced Institute of Science and Technology; Daejeon 34141 Korea
| | - Taejoon Kang
- Hazards Monitoring Bionano Research Center; Korea Research Institute of Bioscience and Biotechnology (KRIBB); Daejeon 34141 Korea
- BioNano Health Guard Research Center, KRIBB, Daejeon 34141 (Korea); Department of Nanobiotechnology; KRIBB School of Biotechnology, UST; Daejeon 34113 Korea
| | - Yongwon Jung
- Department of Chemistry; Korea Advanced Institute of Science and Technology; Daejeon 34141 Korea
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93
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Salvadó M, Reina JJ, Rojo J, Castillón S, Boutureira O. Topological Defects in Hyperbranched Glycopolymers Enhance Binding to Lectins. Chemistry 2017; 23:15790-15794. [PMID: 28851127 DOI: 10.1002/chem.201703432] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2017] [Indexed: 11/10/2022]
Abstract
Central scaffold topology and carbohydrate density are important features in determining the binding mechanism and potency of synthetic multivalent of poly- versus monodisperse carbohydrate systems against a model plant toxin (Ricinus communis agglutinin (RCA120 )). Lower densities of protein receptors favour the use of heterogeneous, polydisperse glycoconjugate presentations, as determined by surface plasmon resonance and dynamic light scattering.
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Affiliation(s)
- Míriam Salvadó
- Departament de Química Analítica i Química Orgànica, Universitat Rovira i Virgili, C/ Marcel lí Domingo 1, 43007, Tarragona, Spain
| | - José J Reina
- Glycosystems Laboratory, Instituto de Investigaciones Químicas, IIQ, CSIC -, Universidad de Sevilla, Av. Américo Vespucio 49, 41092, Sevilla, Spain
| | - Javier Rojo
- Glycosystems Laboratory, Instituto de Investigaciones Químicas, IIQ, CSIC -, Universidad de Sevilla, Av. Américo Vespucio 49, 41092, Sevilla, Spain
| | - Sergio Castillón
- Departament de Química Analítica i Química Orgànica, Universitat Rovira i Virgili, C/ Marcel lí Domingo 1, 43007, Tarragona, Spain
| | - Omar Boutureira
- Departament de Química Analítica i Química Orgànica, Universitat Rovira i Virgili, C/ Marcel lí Domingo 1, 43007, Tarragona, Spain
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94
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Kanfar N, Mehdi A, Dumy P, Ulrich S, Winum JY. Polyhedral Oligomeric Silsesquioxane (POSS) Bearing Glyoxylic Aldehyde as Clickable Platform Towards Multivalent Conjugates. Chemistry 2017; 23:17867-17869. [PMID: 28892198 DOI: 10.1002/chem.201703794] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2017] [Indexed: 01/13/2023]
Abstract
The straightforward access to octafunctional "cubic" silsesquioxane platform grafter with pendant glyoxylic aldehydes is described. This clickable hybrid platform readily reacts with oxyamine or hydrazide compounds to provide, respectively, oxime and acylhydrazone conjugates, thereby offering a new and effective access from which one can elaborate multivalent systems for the targeting of biomolecules of interest.
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Affiliation(s)
- Nasreddine Kanfar
- Institut des Biomolécules Max Mousseron (IBMM), UMR 5247 CNRS, ENSCM, Université de Montpellier, 240 avenue du professeur Emile Jeanbrau, 34296, Montpellier Cedex, France
| | - Ahmad Mehdi
- Institut Charles Gerhardt Montpellier (ICGM), UMR 5253 CNRS, ENSCM, Université de Montpellier, Place Eugène Bataillon, 34090, Montpellier, France
| | - Pascal Dumy
- Institut des Biomolécules Max Mousseron (IBMM), UMR 5247 CNRS, ENSCM, Université de Montpellier, 240 avenue du professeur Emile Jeanbrau, 34296, Montpellier Cedex, France
| | - Sébastien Ulrich
- Institut des Biomolécules Max Mousseron (IBMM), UMR 5247 CNRS, ENSCM, Université de Montpellier, 240 avenue du professeur Emile Jeanbrau, 34296, Montpellier Cedex, France
| | - Jean-Yves Winum
- Institut des Biomolécules Max Mousseron (IBMM), UMR 5247 CNRS, ENSCM, Université de Montpellier, 240 avenue du professeur Emile Jeanbrau, 34296, Montpellier Cedex, France
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95
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Baudet K, Guerra S, Piguet C. Chemical Potential of the Solvent: A Crucial Player for Rationalizing Host-Guest Affinities. Chemistry 2017; 23:16787-16798. [DOI: 10.1002/chem.201703184] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2017] [Indexed: 11/07/2022]
Affiliation(s)
- Karine Baudet
- Department of Inorganic, Analytical and Applied Chemistry; University of Geneva; 30 quai E. Ansermet 1211 Geneva 4 Switzerland
| | - Sebastiano Guerra
- Department of Inorganic, Analytical and Applied Chemistry; University of Geneva; 30 quai E. Ansermet 1211 Geneva 4 Switzerland
| | - Claude Piguet
- Department of Inorganic, Analytical and Applied Chemistry; University of Geneva; 30 quai E. Ansermet 1211 Geneva 4 Switzerland
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96
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Domínguez-Rodríguez P, Reina JJ, Gil-Caballero S, Nieto PM, de Paz JL, Rojo J. Glycodendrimers as Chondroitin Sulfate Mimetics: Synthesis and Binding to Growth Factor Midkine. Chemistry 2017. [DOI: 10.1002/chem.201701890] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Pedro Domínguez-Rodríguez
- Instituto de Investigaciones Químicas (IIQ); CSIC- Universidad de Sevilla; Américo Vespucio 49 41092 Seville Spain
| | - José J. Reina
- Instituto de Investigaciones Químicas (IIQ); CSIC- Universidad de Sevilla; Américo Vespucio 49 41092 Seville Spain
- Current address: Singular Research Centre in Chemical Biology and Molecular Materials (CIQUS); Organic Chemistry Department; University of Santiago de Compostela (USC); Santiago de Compostela Spain
| | - Sergio Gil-Caballero
- Instituto de Investigaciones Químicas (IIQ); CSIC- Universidad de Sevilla; Américo Vespucio 49 41092 Seville Spain
| | - Pedro M. Nieto
- Instituto de Investigaciones Químicas (IIQ); CSIC- Universidad de Sevilla; Américo Vespucio 49 41092 Seville Spain
| | - José L. de Paz
- Instituto de Investigaciones Químicas (IIQ); CSIC- Universidad de Sevilla; Américo Vespucio 49 41092 Seville Spain
| | - Javier Rojo
- Instituto de Investigaciones Químicas (IIQ); CSIC- Universidad de Sevilla; Américo Vespucio 49 41092 Seville Spain
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97
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Zhang GL, Yang L, Zhu J, Wei M, Yan W, Xiong DC, Ye XS. Synthesis and Antigenic Evaluation of Oligosaccharide Mimics of Vi Antigen from Salmonella typhi. Chemistry 2017. [DOI: 10.1002/chem.201702114] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Affiliation(s)
- Gao-Lan Zhang
- State Key Laboratory of Natural and Biomimetic Drugs, School of Pharmaceutical Sciences; Peking University; Xue Yuan Road No. 38 Beijing 100191 China
| | - Lin Yang
- State Key Laboratory of Natural and Biomimetic Drugs, School of Pharmaceutical Sciences; Peking University; Xue Yuan Road No. 38 Beijing 100191 China
| | - Jingjing Zhu
- State Key Laboratory of Natural and Biomimetic Drugs, School of Pharmaceutical Sciences; Peking University; Xue Yuan Road No. 38 Beijing 100191 China
| | - Mengman Wei
- State Key Laboratory of Natural and Biomimetic Drugs, School of Pharmaceutical Sciences; Peking University; Xue Yuan Road No. 38 Beijing 100191 China
| | - Wanjun Yan
- State Key Laboratory of Natural and Biomimetic Drugs, School of Pharmaceutical Sciences; Peking University; Xue Yuan Road No. 38 Beijing 100191 China
| | - De-Cai Xiong
- State Key Laboratory of Natural and Biomimetic Drugs, School of Pharmaceutical Sciences; Peking University; Xue Yuan Road No. 38 Beijing 100191 China
| | - Xin-Shan Ye
- State Key Laboratory of Natural and Biomimetic Drugs, School of Pharmaceutical Sciences; Peking University; Xue Yuan Road No. 38 Beijing 100191 China
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98
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Zhang X, Zhang S, Baek SJ, Best MD. A Boronic Acid Assay for the Detection of Mucin-1 Glycoprotein from Cancer Cells. Chembiochem 2017; 18:1578-1582. [DOI: 10.1002/cbic.201700288] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2017] [Indexed: 11/05/2022]
Affiliation(s)
- Xiaoyu Zhang
- Department of Chemistry; University of Tennessee; 1420 Circle Drive Knoxville TN 37996 USA
| | - Shiqiang Zhang
- Department of Biomedical and Diagnostic Sciences; College of Veterinary Medicine; University of Tennessee; 2407 River Drive Knoxville TN 37996 USA
| | - Seung Joon Baek
- Laboratory of Signal Transduction; College of Veterinary Medicine and; Research Institute for Veterinary Science; Seoul National University; Seoul 08826 Republic of Korea
| | - Michael D. Best
- Department of Chemistry; University of Tennessee; 1420 Circle Drive Knoxville TN 37996 USA
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99
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Alvarez-Dorta D, King DT, Legigan T, Ide D, Adachi I, Deniaud D, Désiré J, Kato A, Vocadlo D, Gouin SG, Blériot Y. Multivalency To Inhibit and Discriminate Hexosaminidases. Chemistry 2017; 23:9022-9025. [DOI: 10.1002/chem.201701756] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2017] [Indexed: 01/17/2023]
Affiliation(s)
- Dimitri Alvarez-Dorta
- LUNAM Université; CEISAM; Chimie Et Interdisciplinarité, Synthèse, Analyse, Modélisation; UMR CNRS 6230; UFR des Sciences et des Techniques; 2, rue de la Houssinière, BP 92208 44322 Nantes Cedex 3 France
| | - Dustin T. King
- Department of Chemistry; Simon Fraser University; 8888 University Drive Burnaby British Columbia V5S 1P6 Canada
| | - Thibaut Legigan
- Equipe Synthèse Organique, Groupe Glycochimie, IC2MP; UMR CNRS 7285; Université de Poitiers; 4 rue Michel Brunet 86073 Poitiers cedex 09 France
| | - Daisuke Ide
- Department of Hospital Pharmacy; University of Toyama; 2630 Sugitani Toyama 930-0194 Japan
| | - Isao Adachi
- Department of Hospital Pharmacy; University of Toyama; 2630 Sugitani Toyama 930-0194 Japan
| | - David Deniaud
- LUNAM Université; CEISAM; Chimie Et Interdisciplinarité, Synthèse, Analyse, Modélisation; UMR CNRS 6230; UFR des Sciences et des Techniques; 2, rue de la Houssinière, BP 92208 44322 Nantes Cedex 3 France
| | - Jérôme Désiré
- Equipe Synthèse Organique, Groupe Glycochimie, IC2MP; UMR CNRS 7285; Université de Poitiers; 4 rue Michel Brunet 86073 Poitiers cedex 09 France
| | - Atsushi Kato
- Department of Hospital Pharmacy; University of Toyama; 2630 Sugitani Toyama 930-0194 Japan
| | - David Vocadlo
- Department of Chemistry; Simon Fraser University; 8888 University Drive Burnaby British Columbia V5S 1P6 Canada
| | - Sébastien G. Gouin
- LUNAM Université; CEISAM; Chimie Et Interdisciplinarité, Synthèse, Analyse, Modélisation; UMR CNRS 6230; UFR des Sciences et des Techniques; 2, rue de la Houssinière, BP 92208 44322 Nantes Cedex 3 France
| | - Yves Blériot
- Equipe Synthèse Organique, Groupe Glycochimie, IC2MP; UMR CNRS 7285; Université de Poitiers; 4 rue Michel Brunet 86073 Poitiers cedex 09 France
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Lauster D, Glanz M, Bardua M, Ludwig K, Hellmund M, Hoffmann U, Hamann A, Böttcher C, Haag R, Hackenberger CPR, Herrmann A. Multivalent Peptide-Nanoparticle Conjugates for Influenza-Virus Inhibition. Angew Chem Int Ed Engl 2017; 56:5931-5936. [PMID: 28444849 PMCID: PMC5485077 DOI: 10.1002/anie.201702005] [Citation(s) in RCA: 78] [Impact Index Per Article: 11.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2017] [Indexed: 12/20/2022]
Abstract
To inhibit binding of the influenza A virus to the host cell glycocalyx, we generate multivalent peptide-polymer nanoparticles binding with nanomolar affinity to the virus via its spike protein hemagglutinin. The chosen dendritic polyglycerol scaffolds are highly biocompatible and well suited for a multivalent presentation. We could demonstrate in vitro that by increasing the size of the polymer scaffold and adjusting the peptide density, viral infection is drastically reduced. Such a peptide-polymer conjugate qualified also in an in vivo infection scenario. With this study we introduce the first non-carbohydrate-based, covalently linked, multivalent virus inhibitor in the nano- to picomolar range by ensuring low peptide-ligand density on a larger dendritic scaffold.
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Affiliation(s)
- Daniel Lauster
- Institut für Biologie, Molekulare BiophysikIRI Life SciencesHumboldt-Universität zu BerlinInvalidenstrasse 4210115BerlinGermany
| | - Maria Glanz
- Leibniz-Institut für Molekulare Pharmakologie (FMP)Robert-Rössle-Strasse-1013125BerlinGermany
- Humboldt Universität zu BerlinInstitut für ChemieBrook-Taylor-Strasse 212489BerlinGermany
| | - Markus Bardua
- Therapeutische Genregulation und Experimentelle RheumatologieDeutsches Rheuma-Forschungszentrum BerlinCharité 14Universitätsmedizin BerlinCharitéplatz 110117BerlinGermany
| | - Kai Ludwig
- Forschungszentrum für Elektronenmikroskopie and Core Facility BioSupraMolInstitut für Chemie und BiochemieFreie Universität BerlinFabeckstrasse 36a14195BerlinGermany
| | - Markus Hellmund
- Institut für Chemie und Biochemie—Organische ChemieFreie Universität BerlinTakustrasse 314195BerlinGermany
| | - Ute Hoffmann
- Therapeutische Genregulation und Experimentelle RheumatologieDeutsches Rheuma-Forschungszentrum BerlinCharité 14Universitätsmedizin BerlinCharitéplatz 110117BerlinGermany
| | - Alf Hamann
- Therapeutische Genregulation und Experimentelle RheumatologieDeutsches Rheuma-Forschungszentrum BerlinCharité 14Universitätsmedizin BerlinCharitéplatz 110117BerlinGermany
| | - Christoph Böttcher
- Forschungszentrum für Elektronenmikroskopie and Core Facility BioSupraMolInstitut für Chemie und BiochemieFreie Universität BerlinFabeckstrasse 36a14195BerlinGermany
| | - Rainer Haag
- Institut für Chemie und Biochemie—Organische ChemieFreie Universität BerlinTakustrasse 314195BerlinGermany
| | - Christian P. R. Hackenberger
- Leibniz-Institut für Molekulare Pharmakologie (FMP)Robert-Rössle-Strasse-1013125BerlinGermany
- Humboldt Universität zu BerlinInstitut für ChemieBrook-Taylor-Strasse 212489BerlinGermany
| | - Andreas Herrmann
- Institut für Biologie, Molekulare BiophysikIRI Life SciencesHumboldt-Universität zu BerlinInvalidenstrasse 4210115BerlinGermany
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