51
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Suzuki K, Stanfield JK, Shoji O, Yanagisawa S, Sugimoto H, Shiro Y, Watanabe Y. Control of stereoselectivity of benzylic hydroxylation catalysed by wild-type cytochrome P450BM3 using decoy molecules. Catal Sci Technol 2017. [DOI: 10.1039/c7cy01130j] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The benzylic hydroxylation of non-native substrates was catalysed by cytochrome P450BM3, wherein “decoy molecules” controlled the stereoselectivity of the reactions.
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Affiliation(s)
- Kazuto Suzuki
- Department of Chemistry
- Graduate School of Science
- Nagoya University
- Nagoya 464-8602
- Japan
| | - Joshua Kyle Stanfield
- Department of Chemistry
- Graduate School of Science
- Nagoya University
- Nagoya 464-8602
- Japan
| | - Osami Shoji
- Department of Chemistry
- Graduate School of Science
- Nagoya University
- Nagoya 464-8602
- Japan
| | - Sota Yanagisawa
- Department of Chemistry
- Graduate School of Science
- Nagoya University
- Nagoya 464-8602
- Japan
| | - Hiroshi Sugimoto
- Core Research for Evolutional Science and Technology (CREST)
- Japan Science and Technology Agency
- Tokyo
- Japan
- RIKEN SPring-8 Center
| | | | - Yoshihito Watanabe
- Research Center for Materials Science
- Nagoya University
- Nagoya 464-8602
- Japan
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52
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Sarkar MR, Hall EA, Dasgupta S, Bell SG. The Use of Directing Groups Enables the Selective and Efficient Biocatalytic Oxidation of Unactivated Adamantyl C-H Bonds. ChemistrySelect 2016. [DOI: 10.1002/slct.201601615] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Affiliation(s)
- Md. Raihan Sarkar
- Department of Chemistry; University Adelaide; Adelaide, SA 5005 Australia
| | - Emma A. Hall
- Department of Chemistry; University Adelaide; Adelaide, SA 5005 Australia
| | - Samrat Dasgupta
- Department of Chemistry; University Adelaide; Adelaide, SA 5005 Australia
| | - Stephen G. Bell
- Department of Chemistry; University Adelaide; Adelaide, SA 5005 Australia
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53
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Behrendorff JBYH, Gillam EMJ. Prospects for Applying Synthetic Biology to Toxicology: Future Opportunities and Current Limitations for the Repurposing of Cytochrome P450 Systems. Chem Res Toxicol 2016; 30:453-468. [DOI: 10.1021/acs.chemrestox.6b00396] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
| | - Elizabeth M. J. Gillam
- School
of Chemistry and Molecular Biosciences, The University of Queensland, St. Lucia, Brisbane 4072, Australia
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54
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An engineered outer membrane pore enables an efficient oxygenation of aromatics and terpenes. ACTA ACUST UNITED AC 2016. [DOI: 10.1016/j.molcatb.2016.11.007] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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55
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Munday SD, Shoji O, Watanabe Y, Wong LL, Bell SG. Improved oxidation of aromatic and aliphatic hydrocarbons using rate enhancing variants of P450Bm3 in combination with decoy molecules. Chem Commun (Camb) 2016; 52:1036-9. [PMID: 26593228 DOI: 10.1039/c5cc09247g] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Abstract
Enzyme performance can be improved using decoy molecules or engineered variants to accelerate the activity without affecting selectivity. Here we combine a rate accelerator variant of cytochrome P450Bm3 with decoy molecules to enhance the oxidation activity of a range of small organic molecules. This combined approach offers superior biocatalytic efficiency without modifying the product distribution.
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Affiliation(s)
- Samuel D Munday
- Department of Chemistry, University of Adelaide, SA 5005, Australia.
| | - Osami Shoji
- Department of Chemistry, Graduate School of Science, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, 464-8602, Japan
| | - Yoshihito Watanabe
- Department of Chemistry, Graduate School of Science, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, 464-8602, Japan
| | - Luet-Lok Wong
- Department of Chemistry, University of Oxford, Inorganic Chemistry Laboratory, South Parks Road, Oxford, OX1 3QR, UK
| | - Stephen G Bell
- Department of Chemistry, University of Adelaide, SA 5005, Australia.
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56
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Li A, Ye L, Yang X, Yang C, Gu J, Yu H. Structure-guided stereoselectivity inversion of a short-chain dehydrogenase/reductase towards halogenated acetophenones. Chem Commun (Camb) 2016; 52:6284-7. [DOI: 10.1039/c6cc00051g] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The structure-guided rational design of an NADH-dependent short-chain dehydrogenase/reductase (SDR) reversed the stereoselectivity towards halogenated acetophenones from Prelog to anti-Prelog.
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Affiliation(s)
- Aipeng Li
- Institute of Bioengineering
- College of Chemical and Biological Engineering
- Zhejiang University
- Hangzhou 310027
- P. R. China
| | - Lidan Ye
- Institute of Bioengineering
- College of Chemical and Biological Engineering
- Zhejiang University
- Hangzhou 310027
- P. R. China
| | - Xiaohong Yang
- Institute of Bioengineering
- College of Chemical and Biological Engineering
- Zhejiang University
- Hangzhou 310027
- P. R. China
| | - Chengcheng Yang
- Institute of Bioengineering
- College of Chemical and Biological Engineering
- Zhejiang University
- Hangzhou 310027
- P. R. China
| | - Jiali Gu
- College of Life Science
- Department of Materials Chemistry
- Huzhou University
- Huzhou 313000
- P. R. China
| | - Hongwei Yu
- Institute of Bioengineering
- College of Chemical and Biological Engineering
- Zhejiang University
- Hangzhou 310027
- P. R. China
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57
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Dennig A, Busto E, Kroutil W, Faber K. Biocatalytic One-Pot Synthesis of l-Tyrosine Derivatives from Monosubstituted Benzenes, Pyruvate, and Ammonia. ACS Catal 2015. [DOI: 10.1021/acscatal.5b02129] [Citation(s) in RCA: 46] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Alexander Dennig
- Department of Chemistry,
Organic and Bioorganic Chemistry, University of Graz, Heinrichstrasse
28, A-8010 Graz, Austria
| | - Eduardo Busto
- Department of Chemistry,
Organic and Bioorganic Chemistry, University of Graz, Heinrichstrasse
28, A-8010 Graz, Austria
| | - Wolfgang Kroutil
- Department of Chemistry,
Organic and Bioorganic Chemistry, University of Graz, Heinrichstrasse
28, A-8010 Graz, Austria
| | - Kurt Faber
- Department of Chemistry,
Organic and Bioorganic Chemistry, University of Graz, Heinrichstrasse
28, A-8010 Graz, Austria
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58
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Denard CA, Ren H, Zhao H. Improving and repurposing biocatalysts via directed evolution. Curr Opin Chem Biol 2015; 25:55-64. [DOI: 10.1016/j.cbpa.2014.12.036] [Citation(s) in RCA: 204] [Impact Index Per Article: 22.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2014] [Revised: 12/14/2014] [Accepted: 12/18/2014] [Indexed: 11/27/2022]
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59
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Roiban GD, Reetz MT. Expanding the toolbox of organic chemists: directed evolution of P450 monooxygenases as catalysts in regio- and stereoselective oxidative hydroxylation. Chem Commun (Camb) 2015; 51:2208-24. [DOI: 10.1039/c4cc09218j] [Citation(s) in RCA: 120] [Impact Index Per Article: 13.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
Cytochrome P450 enzymes (CYPs) have been used for more than six decades as catalysts for the CH-activating oxidative hydroxylation of organic compounds with formation of added-value products.
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Affiliation(s)
| | - Manfred T. Reetz
- Department of Chemistry
- Philipps-Universität Marburg
- 35032 Marburg
- Germany
- Max-Planck-Institut für Kohlenforschung
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60
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Hyster TK, Farwell CC, Buller AR, McIntosh JA, Arnold FH. Enzyme-controlled nitrogen-atom transfer enables regiodivergent C-H amination. J Am Chem Soc 2014; 136:15505-8. [PMID: 25325618 PMCID: PMC4227740 DOI: 10.1021/ja509308v] [Citation(s) in RCA: 124] [Impact Index Per Article: 12.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2014] [Indexed: 12/18/2022]
Abstract
We recently demonstrated that variants of cytochrome P450BM3 (CYP102A1) catalyze the insertion of nitrogen species into benzylic C-H bonds to form new C-N bonds. An outstanding challenge in the field of C-H amination is catalyst-controlled regioselectivity. Here, we report two engineered variants of P450BM3 that provide divergent regioselectivity for C-H amination-one favoring amination of benzylic C-H bonds and the other favoring homo-benzylic C-H bonds. The two variants provide nearly identical kinetic isotope effect values (2.8-3.0), suggesting that C-H abstraction is rate-limiting. The 2.66-Å crystal structure of the most active enzyme suggests that the engineered active site can preorganize the substrate for reactivity. We hypothesize that the enzyme controls regioselectivity through localization of a single C-H bond close to the iron nitrenoid.
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Affiliation(s)
- Todd K. Hyster
- Division of Chemistry and
Chemical Engineering 210-41, California
Institute of Technology, 1200 East California Boulevard, Pasadena, California 91125, United States
| | - Christopher C. Farwell
- Division of Chemistry and
Chemical Engineering 210-41, California
Institute of Technology, 1200 East California Boulevard, Pasadena, California 91125, United States
| | - Andrew R. Buller
- Division of Chemistry and
Chemical Engineering 210-41, California
Institute of Technology, 1200 East California Boulevard, Pasadena, California 91125, United States
| | - John A. McIntosh
- Division of Chemistry and
Chemical Engineering 210-41, California
Institute of Technology, 1200 East California Boulevard, Pasadena, California 91125, United States
| | - Frances H. Arnold
- Division of Chemistry and
Chemical Engineering 210-41, California
Institute of Technology, 1200 East California Boulevard, Pasadena, California 91125, United States
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61
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Lee JH, Nam DH, Lee SH, Park JH, Park SJ, Lee SH, Park CB, Jeong KJ. New platform for cytochrome p450 reaction combining in situ immobilization on biopolymer. Bioconjug Chem 2014; 25:2101-4. [PMID: 25322062 DOI: 10.1021/bc500404j] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
Abstract
We describe an efficienct chemical conversion platform with in situ immobilization of P450-BM3 on poly(3-hydroxybutyrate) granules. Through fusion with phasin, P450-BM3 is easily immobilized on poly(3-hydroxybutyrate) granules in Escherichia coli. In our work, the immobilized P450 exhibited higher stability and catalytic activity compared to free P450 against changes of pH, temperature, and concentrations of urea and ions. Through quick recovery of immobilized enzyme, the P450-P(3HB) complex successfully catalyzed an O-dealkylation reaction several times with maintained activity. Using the robust P450-P(3HB) complex, we performed a P450-catalyzed reaction on a preparative reactor scale (100 mL) and high-level production (12.3 μM) of 7-hydroxycoumarine from 7-ethoxycoumarin could be achieved.
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Affiliation(s)
- Jae Hyung Lee
- Department of Chemical and Biomolecular Engineering, and ‡Department of Materials Science and Engineering, Korea Advanced Institute of Science and Technology , 335 Science Road, Daejeon 305-701, Republic of Korea
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62
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Application of engineered cytochrome P450 mutants as biocatalysts for the synthesis of benzylic and aromatic metabolites of fenamic acid NSAIDs. Bioorg Med Chem 2014; 22:5613-20. [DOI: 10.1016/j.bmc.2014.06.022] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2014] [Revised: 06/09/2014] [Accepted: 06/11/2014] [Indexed: 11/19/2022]
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63
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Wang X, Zhang T, Li B, Yang Q, Jiang S. Efficient hydroxylation of aromatic compounds catalyzed by an iron(II) complex with H2
O2. Appl Organomet Chem 2014. [DOI: 10.1002/aoc.3178] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Xiao Wang
- Collaborative Innovation Center of Chemical Science and Engineering (Tianjin), Tianjin Key Laboratory of Applied Catalysis Science and Technology, School of Chemical Engineering and Technology; Tianjin University; Tianjin 300072 People's Republic of China
| | - Tianyong Zhang
- Collaborative Innovation Center of Chemical Science and Engineering (Tianjin), Tianjin Key Laboratory of Applied Catalysis Science and Technology, School of Chemical Engineering and Technology; Tianjin University; Tianjin 300072 People's Republic of China
| | - Bin Li
- Collaborative Innovation Center of Chemical Science and Engineering (Tianjin), Tianjin Key Laboratory of Applied Catalysis Science and Technology, School of Chemical Engineering and Technology; Tianjin University; Tianjin 300072 People's Republic of China
| | - Qiusheng Yang
- School of Chemical Engineering and Technology; Hebei University of Technology; Tianjin 300130 People's Republic of China
| | - Shuang Jiang
- Collaborative Innovation Center of Chemical Science and Engineering (Tianjin), Tianjin Key Laboratory of Applied Catalysis Science and Technology, School of Chemical Engineering and Technology; Tianjin University; Tianjin 300072 People's Republic of China
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64
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Gröger H. Hydroxy-Funktionalisierung nichtaktivierter C-H- und CC-Bindungen: Neue Perspektiven für die Synthese von Alkoholen durch biokatalytische Verfahren. Angew Chem Int Ed Engl 2014. [DOI: 10.1002/ange.201308556] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
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65
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Gröger H. Hydroxy Functionalization of Non-Activated CH and CC Bonds: New Perspectives for the Synthesis of Alcohols through Biocatalytic Processes. Angew Chem Int Ed Engl 2014; 53:3067-9. [DOI: 10.1002/anie.201308556] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2013] [Indexed: 11/08/2022]
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66
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Yang Y, Liu J, Li Z. Engineering of P450pyr Hydroxylase for the Highly Regio- and Enantioselective Subterminal Hydroxylation of Alkanes. Angew Chem Int Ed Engl 2014; 53:3120-4. [DOI: 10.1002/anie.201311091] [Citation(s) in RCA: 62] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2013] [Indexed: 11/09/2022]
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67
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Yang Y, Liu J, Li Z. Engineering of P450pyr Hydroxylase for the Highly Regio- and Enantioselective Subterminal Hydroxylation of Alkanes. Angew Chem Int Ed Engl 2014. [DOI: 10.1002/ange.201311091] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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68
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Wang S, Nie Y, Xu Y, Zhang R, Ko TP, Huang CH, Chan HC, Guo RT, Xiao R. Unconserved substrate-binding sites direct the stereoselectivity of medium-chain alcohol dehydrogenase. Chem Commun (Camb) 2014; 50:7770-2. [DOI: 10.1039/c4cc01752h] [Citation(s) in RCA: 49] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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69
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Hill RA, Sutherland A. Hot off the press. Nat Prod Rep 2014. [DOI: 10.1039/c4np90015d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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