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Pedersen CM, Olsen J, Brka AB, Bols M. Quantifying the electronic effects of carbohydrate hydroxy groups by using aminosugar models. Chemistry 2011; 17:7080-6. [PMID: 21542038 DOI: 10.1002/chem.201100020] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2011] [Indexed: 11/07/2022]
Abstract
Methyl amino-deoxy-glycosides with α- and β-gluco, α-galacto, or α-manno stereochemistry with the amino functionality in each of the four possible non-anomeric positions have been synthesized and their pK(a) values determined by titration. These model compounds were chosen because they are the amino derivatives of the most common glycosyl acceptors. From this study it was possible to evaluate the electron density at each of the given positions in the carbohydrate and compare them. Some general trends were observed: The basicity of the amino groups decreases in the order 6-NH(2)>3-NH(2)>2-NH(2)>4-NH(2) (referring to the position). The basicity of a of an amino-deoxy-sugar generally increases when one or more substituents on the sugar ring are axial. The basicity decreases when the amine is antiperiplanar to an oxygen atom. These findings are in agreement with the observations obtained from glycosylation chemistry and the regioselective protection of sugars.
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52
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Heuckendorff M, Pedersen CM, Bols M. Quantifying electronic effects of common carbohydrate protecting groups in a piperidine model system. Chemistry 2011; 16:13982-94. [PMID: 21132699 DOI: 10.1002/chem.201002313] [Citation(s) in RCA: 46] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Abstract
A study of the substituent effects of protecting groups in hydroxypiperidines was carried out and compared with the electronic effects in glycosylation chemistry. 1-Deoxynojirimycin, the aza-sugar analogue of 1-deoxy-D-glucose, was used as a carbohydrate model, and protected with the most common carbohydrate protecting groups. The different stabilization of positive charge on the ring heteroatom was determined by pK(a) measurements. The protecting groups could be ranked in the following way after their destabilization of the piperidinium ion: benzoyl ≥ acetyl ≫ 4,6-O-benzylidine >benzyl ≈ methyl > H > 3,6-anhydro > tert-butyldimethylsilyl. The observed effects of having protecting groups with different electronic characteristics were found to be in agreement with the "armed-disarmed" concept. Comparison of the pK(a) of benzylated and benzoylated epimers of 3-hydroxy-6-hydroxymethyl piperidines showed increased stabilization of the piperidinium ion in the axial epimer. The difference between axial and equatorial epimers was larger in the benzylated than in the benzoylated piperidines.
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Affiliation(s)
- Mads Heuckendorff
- Department of Chemistry, University of Copenhagen, DK-2100 Copenhagen Ø, Denmark
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54
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55
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56
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Kamkhachorn T, Parameswar AR, Demchenko AV. Comparison of the armed/disarmed building blocks of the D-gluco and D-glucosamino series in the context of chemoselective oligosaccharide synthesis. Org Lett 2010; 12:3078-81. [PMID: 20527789 DOI: 10.1021/ol101089u] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
A very elegant Fraser-Reid armed-disarmed approach recently expanded to the building blocks of the superarmed and superdisarmed series shows very high utility in chemoselective oligosaccharide synthesis. Although a number of studies dedicated to the chemoselective activation of 2-amino-2-deoxysugars have emerged, little remains known about how the reactivity of the armed/disarmed building blocks of the neutral sugars directly compares to that of their 2-aminosugar counterparts. A preliminary study of this comparative reactivity is presented.
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Affiliation(s)
- Teerada Kamkhachorn
- Department of Chemistry and Biochemistry, University of Missouri-St. Louis, One University Boulevard, St. Louis, Missouri 63121, USA
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57
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Pilgrim W, Murphy PV. SnCl4- and TiCl4-Catalyzed Anomerization of Acylated O- and S-Glycosides: Analysis of Factors That Lead to Higher α:β Anomer Ratios and Reaction Rates. J Org Chem 2010; 75:6747-55. [DOI: 10.1021/jo101090f] [Citation(s) in RCA: 75] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Affiliation(s)
- Wayne Pilgrim
- School of Chemistry, National University of Ireland, Galway, Ireland
- Centre for Synthesis and Chemical Biology, School of Chemistry and Chemical Biology, University College Dublin, Belfield, Dublin 4, Ireland
| | - Paul V. Murphy
- School of Chemistry, National University of Ireland, Galway, Ireland
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58
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Premathilake HD, Mydock LK, Demchenko AV. Superarming common glycosyl donors by simple 2-O-benzoyl-3,4,6-tri-O-benzyl protection. J Org Chem 2010; 75:1095-100. [PMID: 20104917 DOI: 10.1021/jo9021474] [Citation(s) in RCA: 58] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
A complementary concept for superarming glycosyl donors through the use of common protecting groups was previously discovered with S-benzoxazolyl (SBox) glycosyl donors. As this strategy can be of benefit to existing oligosaccharide methodologies, it has now been expanded to encompass a wide array of common, stable glycosyl donors. The versatility of this developed technique has been further illustrated in application to a sequential chemoselective oligosaccharide synthesis, wherein a superarmed ethyl thioglycoside was incorporated into the conventional armed-disarmed strategy.
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Affiliation(s)
- Hemali D Premathilake
- Department of Chemistry and Biochemistry, University of Missouri-St. Louis, One University Boulevard, St. Louis, Missouri 63121, USA
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59
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Damager I, Engelsen SB, Blennow A, Lindberg Møller B, Motawia MS. First principles insight into the alpha-glucan structures of starch: their synthesis, conformation, and hydration. Chem Rev 2010; 110:2049-80. [PMID: 20302376 PMCID: PMC2854524 DOI: 10.1021/cr900227t] [Citation(s) in RCA: 79] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2009] [Indexed: 12/02/2022]
Affiliation(s)
| | | | | | | | - Mohammed Saddik Motawia
- To whom correspondence should be addressed. E-mail: . Tel: +45 35 33 33 69. Fax: +45 35 33 33 33
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60
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Superarmed and superdisarmed building blocks in expeditious oligosaccharide synthesis. Top Curr Chem (Cham) 2010; 301:189-221. [PMID: 21120713 DOI: 10.1007/128_2010_106] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
: Traditional strategies for oligosaccharide synthesis often require extensive protecting and/or leaving group manipulations between each glycosylation step, thereby increasing the total number of synthetic steps while decreasing both the efficiency and yield. In contrast, expeditious strategies allow for the rapid chemical synthesis of complex carbohydrates by minimizing extraneous chemical manipulations. The armed-disarmed approach for chemoselective oligosaccharide synthesis is one such strategy that addresses these challenges. Herein, the significant improvements that have recently emerged in the area of chemoselective activation are discussed. These advancements have expanded the scope of the armed-disarmed methodology so that it can now be applied to a wider range of oligosaccharide sequences, in comparison to the original concept. Surveyed in this chapter are representative examples wherein these excellent innovations have already been applied to the synthesis of various oligosaccharides and glycoconjugates.
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61
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Mydock LK, Demchenko AV. Mechanism of chemical O-glycosylation: from early studies to recent discoveries. Org Biomol Chem 2010; 8:497-510. [DOI: 10.1039/b916088d] [Citation(s) in RCA: 224] [Impact Index Per Article: 14.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
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62
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Smoot JT, Demchenko AV. Oligosaccharide synthesis: from conventional methods to modern expeditious strategies. Adv Carbohydr Chem Biochem 2009; 62:161-250. [PMID: 19501706 DOI: 10.1016/s0065-2318(09)00005-5] [Citation(s) in RCA: 48] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
Affiliation(s)
- James T Smoot
- Department of Chemistry and Biochemistry, University of Missouri, St. Louis, MO 63121, USA
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63
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Computational studies of the role of glycopyranosyl oxacarbenium ions in glycobiology and glycochemistry. Adv Carbohydr Chem Biochem 2009; 62:83-159. [PMID: 19501705 DOI: 10.1016/s0065-2318(09)00004-3] [Citation(s) in RCA: 74] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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64
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Crich D, Li L, Shirai M. The 4-(tert-butyldiphenylsiloxy)-3-fluorobenzyl group: a new alcohol protecting group, fully orthogonal with the p-methoxybenzyl group and removable under desilylation conditions. J Org Chem 2009; 74:2486-93. [PMID: 19243158 PMCID: PMC3102264 DOI: 10.1021/jo900026e] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
A new benzyl ether-type protecting group for alcohols, the 4-(tert-butyldiphenylsiloxy)-3-fluorobenzyl group, is introduced. The protecting group is introduced by means of the readily prepared benzyl bromide and is cleaved with tetrabutylammonium fluoride in dimethylformamide under microwave irradiation. The fluoride substituent provides stability to oxidizing conditions, such that the new protecting group is fully compatible with the removal of p-methoxybenzyl ethers with DDQ. Applications of the new protecting group in the direct stereocontrolled synthesis of beta-mannopyranosides are presented.
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Affiliation(s)
- David Crich
- Department of Chemistry, Wayne State University, 5101 Cass Avenue, Detroit, Michigan 48202, USA.
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65
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66
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67
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Yang MT, Woerpel KA. The effect of electrostatic interactions on conformational equilibria of multiply substituted tetrahydropyran oxocarbenium ions. J Org Chem 2009; 74:545-53. [PMID: 19072093 DOI: 10.1021/jo8017846] [Citation(s) in RCA: 110] [Impact Index Per Article: 6.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The three-dimensional structures of dioxocarbenium ions related to glycosyl cations were determined by an analysis of spectroscopic, computational, and reactivity data. Hypothetical low-energy structures of the dioxocarbenium ions were correlated with both experimentally determined (1)H NMR coupling constants and diastereoselectivity results from nucleophilic substitution reactions. This method confirmed the pseudoaxial preference of C-3 alkoxy-substituted systems and revealed the conformational preference of the C-5 alkoxymethyl group. Although the monosubstituted C-5 alkoxymethyl substituent preferred a pseudoequatorial orientation, the C-5-C-6 bond rotation was controlled by an electrostatic effect. The preferred diaxial conformer of the trans-4,5-disubstituted tetrahydropyranyl system underscored the importance of electrostatic effects in dictating conformational equilibria. In the 2-deoxymannose system, although steric effects influenced the orientation of the C-5 alkoxymethyl substituent, the all-axial conformer was favored because of electrostatic stabilization.
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Affiliation(s)
- Michael T Yang
- Department of Chemistry, University of California, Irvine, California 92697-2025, USA
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68
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Crich D, Hu T, Cai F. Does neighboring group participation by non-vicinal esters play a role in glycosylation reactions? Effective probes for the detection of bridging intermediates. J Org Chem 2008; 73:8942-53. [PMID: 18939876 PMCID: PMC2669227 DOI: 10.1021/jo801630m] [Citation(s) in RCA: 111] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Neighboring group participation in glycopyranosylation reactions is probed for esters at the 3-O-axial and -equatorial, 4-O-axial and -equatorial, and 6-O-sites of a range of donors through the use tert-butoxycarbonyl esters. The anticipated intermediate cyclic dioxanyl cation is interrupted for the axial 3-O-derivative, leading to the formation of a 1,3-O-cyclic carbonate ester, with loss of a tert-butyl cation, providing convincing evidence of participation by esters at that position. However, no evidence was found for such a fragmentation of carbonate esters at the 3-O-equatorial, 4-O-axial and -equatorial, and 6-O positions, indicating that neighboring group participation from those sites does not occur under typical glycosylation conditions. Further probes employing a 4-O-(2-carboxy)benzoate ester and a 4-O-(4-methoxybenzoate) ester, the latter in conjunction with an (18)O quench designed to detect bridging intermediates, also failed to provide evidence for participation by 4-O-esters in galactopyranosylation.
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Affiliation(s)
- David Crich
- Chemistry Department, Wayne State University, 5101 Cass Avenue, Detroit, Michigan 48202, USA.
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69
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Mydock LK, Demchenko AV. Application of the superarmed glycosyl donor to chemoselective oligosaccharide synthesis. Org Lett 2008; 10:2107-10. [PMID: 18447362 DOI: 10.1021/ol800648d] [Citation(s) in RCA: 62] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Abstract
Recently, we discovered a novel method for "superarming" glycosyl donors. Herein, this concept has been exemplified in one-pot oligosaccharide syntheses, whereby the superarmed glycosyl donor was chemoselectively activated over traditional "armed" and disarmed glycosyl acceptors. Direct side-by-side comparison of the reactivities of the classic armed and superarmed glycosyl donors further validates the credibility of the novel concept.
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Affiliation(s)
- Laurel K Mydock
- Department of Chemistry and Biochemistry, University of Missouri-St. Louis, St. Louis, Missouri 63121, USA
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70
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Mydock LK, Demchenko AV. Superarming the S-benzoxazolyl glycosyl donors by simple 2-O-benzoyl-3,4,6-tri-O-benzyl protection. Org Lett 2008; 10:2103-6. [PMID: 18447363 DOI: 10.1021/ol800345j] [Citation(s) in RCA: 76] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The strategic placement of common protecting groups led to the discovery of a new method for "superarming" glycosyl donors. Conceptualized from our previous studies on the O-2/O-5 Cooperative Effect, it was determined that S-benzoxazolyl glycosyl donors possessing both a participating moiety at C-2 and an electronically armed lone pair at O-5, such as the superarmed glycosyl donor shown above, were exceptionally reactive.
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Affiliation(s)
- Laurel K Mydock
- Department of Chemistry and Biochemistry, University of Missouri-St. Louis, St. Louis, Missouri 63121, USA
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71
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Bedini E, Comegna D, Nola AD, Parrilli M. Selective acetolysis of 6-deoxy-sugar oligosaccharide building blocks governed by the armed–disarmed effect. Tetrahedron Lett 2008. [DOI: 10.1016/j.tetlet.2008.02.090] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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72
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Pedersen CM, Marinescu LG, Bols M. Conformationally armed glycosyl donors: reactivity quantification, new donors and one pot reactions. Chem Commun (Camb) 2008:2465-7. [DOI: 10.1039/b801305e] [Citation(s) in RCA: 74] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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