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Clancy NT, Jones G, Maier-Hein L, Elson DS, Stoyanov D. Surgical spectral imaging. Med Image Anal 2020; 63:101699. [PMID: 32375102 PMCID: PMC7903143 DOI: 10.1016/j.media.2020.101699] [Citation(s) in RCA: 62] [Impact Index Per Article: 15.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2019] [Revised: 03/30/2020] [Accepted: 04/06/2020] [Indexed: 12/24/2022]
Abstract
Recent technological developments have resulted in the availability of miniaturised spectral imaging sensors capable of operating in the multi- (MSI) and hyperspectral imaging (HSI) regimes. Simultaneous advances in image-processing techniques and artificial intelligence (AI), especially in machine learning and deep learning, have made these data-rich modalities highly attractive as a means of extracting biological information non-destructively. Surgery in particular is poised to benefit from this, as spectrally-resolved tissue optical properties can offer enhanced contrast as well as diagnostic and guidance information during interventions. This is particularly relevant for procedures where inherent contrast is low under standard white light visualisation. This review summarises recent work in surgical spectral imaging (SSI) techniques, taken from Pubmed, Google Scholar and arXiv searches spanning the period 2013-2019. New hardware, optimised for use in both open and minimally-invasive surgery (MIS), is described, and recent commercial activity is summarised. Computational approaches to extract spectral information from conventional colour images are reviewed, as tip-mounted cameras become more commonplace in MIS. Model-based and machine learning methods of data analysis are discussed in addition to simulation, phantom and clinical validation experiments. A wide variety of surgical pilot studies are reported but it is apparent that further work is needed to quantify the clinical value of MSI/HSI. The current trend toward data-driven analysis emphasises the importance of widely-available, standardised spectral imaging datasets, which will aid understanding of variability across organs and patients, and drive clinical translation.
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Affiliation(s)
- Neil T Clancy
- Wellcome/EPSRC Centre for Interventional and Surgical Sciences (WEISS), University College London, United Kingdom; Centre for Medical Image Computing (CMIC), Department of Medical Physics and Biomedical Engineering, University College London, United Kingdom.
| | - Geoffrey Jones
- Wellcome/EPSRC Centre for Interventional and Surgical Sciences (WEISS), University College London, United Kingdom; Centre for Medical Image Computing (CMIC), Department of Computer Science, University College London, United Kingdom
| | | | - Daniel S Elson
- Hamlyn Centre for Robotic Surgery, Institute of Global Health Innovation, Imperial College London, United Kingdom; Department of Surgery and Cancer, Imperial College London, United Kingdom
| | - Danail Stoyanov
- Wellcome/EPSRC Centre for Interventional and Surgical Sciences (WEISS), University College London, United Kingdom; Centre for Medical Image Computing (CMIC), Department of Computer Science, University College London, United Kingdom
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Halicek M, Dormer JD, Little JV, Chen AY, Fei B. Tumor detection of the thyroid and salivary glands using hyperspectral imaging and deep learning. BIOMEDICAL OPTICS EXPRESS 2020; 11:1383-1400. [PMID: 32206417 PMCID: PMC7075628 DOI: 10.1364/boe.381257] [Citation(s) in RCA: 45] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/23/2019] [Revised: 01/24/2020] [Accepted: 01/25/2020] [Indexed: 05/05/2023]
Abstract
The performance of hyperspectral imaging (HSI) for tumor detection is investigated in ex-vivo specimens from the thyroid (N = 200) and salivary glands (N = 16) from 82 patients. Tissues were imaged with HSI in broadband reflectance and autofluorescence modes. For comparison, the tissues were imaged with two fluorescent dyes. Additionally, HSI was used to synthesize three-band RGB multiplex images to represent the human-eye response and Gaussian RGBs, which are referred to as HSI-synthesized RGB images. Using histological ground truths, deep learning algorithms were developed for tumor detection. For the classification of thyroid tumors, HSI-synthesized RGB images achieved the best performance with an AUC score of 0.90. In salivary glands, HSI had the best performance with 0.92 AUC score. This study demonstrates that HSI could aid surgeons and pathologists in detecting tumors of the thyroid and salivary glands.
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Affiliation(s)
- Martin Halicek
- The University of Texas at Dallas, Department of Bioengineering, Richardson, TX 75080, USA
- Emory University and Georgia Institute of Technology, Department of Biomedical Engineering, Atlanta, GA 30332, USA
| | - James D. Dormer
- The University of Texas at Dallas, Department of Bioengineering, Richardson, TX 75080, USA
| | - James V. Little
- Emory University School of Medicine, Department of Pathology and Laboratory Medicine, Atlanta, GA 30322, USA
| | - Amy Y. Chen
- Emory University School of Medicine, Department of Otolaryngology, Atlanta, GA 30322, USA
| | - Baowei Fei
- The University of Texas at Dallas, Department of Bioengineering, Richardson, TX 75080, USA
- The University of Texas Southwestern Medical Center, Department of Radiology, Dallas, TX 75080, USA
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Favreau PF, Deal JA, Harris B, Weber DS, Rich TC, Leavesley SJ. Label-free spectroscopic tissue characterization using fluorescence excitation-scanning spectral imaging. JOURNAL OF BIOPHOTONICS 2020; 13:e201900183. [PMID: 31566889 PMCID: PMC8491137 DOI: 10.1002/jbio.201900183] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/09/2019] [Revised: 09/09/2019] [Accepted: 09/15/2019] [Indexed: 05/04/2023]
Abstract
Spectral imaging approaches provide new possibilities for measuring and discriminating fluorescent molecules in living cells and tissues. These approaches often employ tunable filters and robust image processing algorithms to identify many fluorescent labels in a single image set. Here, we present results from a novel spectral imaging technology that scans the fluorescence excitation spectrum, demonstrating that excitation-scanning hyperspectral image data can discriminate among tissue types and estimate the molecular composition of tissues. This approach allows fast, accurate quantification of many fluorescent species from multivariate image data without the need of exogenous labels or dyes. We evaluated the ability of the excitation-scanning approach to identify endogenous fluorescence signatures in multiple unlabeled tissue types. Signatures were screened using multi-pass principal component analysis. Endmember extraction techniques revealed conserved autofluorescent signatures across multiple tissue types. We further examined the ability to detect known molecular signatures by constructing spectral libraries of common endogenous fluorophores and applying multiple spectral analysis techniques on test images from lung, liver and kidney. Spectral deconvolution revealed structure-specific morphologic contrast generated from pure molecule signatures. These results demonstrate that excitation-scanning spectral imaging, coupled with spectral imaging processing techniques, provides an approach for discriminating among tissue types and assessing the molecular composition of tissues. Additionally, excitation scanning offers the ability to rapidly screen molecular markers across a range of tissues without using fluorescent labels. This approach lays the groundwork for translation of excitation-scanning technologies to clinical imaging platforms.
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Affiliation(s)
- Peter F Favreau
- Department of Biochemistry, University of Wisconsin-Madison, Madison, Wisconsin
| | - Joshua A Deal
- Department of Chemical and Biomolecular Engineering, Center for Lung Biology, University of South Alabama, Mobile, Alabama
| | - Bradley Harris
- Department of Medical Sciences, University of South Alabama, Mobile, Alabama
| | - David S Weber
- Department of Physiology, University of South Alabama, Mobile, Alabama
| | - Thomas C Rich
- Department of Pharmacology, Center for Lung Biology, University of South Alabama, Mobile, Alabama
| | - Silas J Leavesley
- Department of Chemical and Biomolecular Engineering, Center for Lung Biology, University of South Alabama, Mobile, Alabama
- Department of Pharmacology, Center for Lung Biology, University of South Alabama, Mobile, Alabama
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Zhang Y, Wu X, He L, Meng C, Du S, Bao J, Zheng Y. Applications of hyperspectral imaging in the detection and diagnosis of solid tumors. Transl Cancer Res 2020; 9:1265-1277. [PMID: 35117471 PMCID: PMC8798535 DOI: 10.21037/tcr.2019.12.53] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2019] [Accepted: 11/28/2019] [Indexed: 11/09/2022]
Abstract
Hyperspectral imaging (HSI) is an emerging new technology in solid tumor diagnosis and detection. It incorporates traditional imaging and spectroscopy together to obtain both spatial and spectral information from tissues simultaneously in a non-invasive manner. This imaging modality is based on the principle that different tissues inherit different spectral reflectance responses that present as unique spectral fingerprints. HSI captures those composition-specific fingerprints to identify cancerous and normal tissues. It becomes a promising tool for performing tumor diagnosis and detection from the label-free histopathological examination to real-time intraoperative assistance. This review introduces the basic principles of HSI and summarizes its methodology and recent advances in solid tumor detection. In particular, the advantages of HSI applied to solid tumors are highlighted to show its potential for clinical use.
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Affiliation(s)
- Yating Zhang
- Department of Electronic Engineering, Tsinghua University, Beijing 100084, China
| | - Xiaoqian Wu
- Department of Liver Surgery, Peking Union Medicine Collage Hospital, Chinese Academy of Medical Science and Peking Union Medical College, Beijing 100730, China
| | - Li He
- Department of Medicine, University of Alabama at Birmingham, Birmingham, AL, USA
| | - Chan Meng
- Department of Pathology, University of Alabama at Birmingham, Birmingham, AL, USA
| | - Shunda Du
- Department of Liver Surgery, Peking Union Medicine Collage Hospital, Chinese Academy of Medical Science and Peking Union Medical College, Beijing 100730, China
| | - Jie Bao
- Department of Electronic Engineering, Tsinghua University, Beijing 100084, China
| | - Yongchang Zheng
- Department of Liver Surgery, Peking Union Medicine Collage Hospital, Chinese Academy of Medical Science and Peking Union Medical College, Beijing 100730, China
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Inkinen J, Ahonen M, Iakovleva E, Karppinen P, Mielonen E, Mäkinen R, Mannonen K, Koivisto J. Contamination detection by optical measurements in a real-life environment: A hospital case study. JOURNAL OF BIOPHOTONICS 2020; 13:e201960069. [PMID: 31613045 PMCID: PMC7065611 DOI: 10.1002/jbio.201960069] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/01/2019] [Revised: 09/30/2019] [Accepted: 10/06/2019] [Indexed: 05/05/2023]
Abstract
Organic dirt on touch surfaces can be biological contaminants (microbes) or nutrients for those but is often invisible by the human eye causing challenges for evaluating the need for cleaning. Using hyperspectral scanning algorithm, touch surface cleanliness monitoring by optical imaging was studied in a real-life hospital environment. As the highlight, a human eye invisible stain from a dirty chair armrest was revealed manually with algorithms including threshold levels for intensity and clustering analysis with two excitation lights (green and red) and one bandpass filter (wavelength λ = 500 nm). The same result was confirmed by automatic k-means clustering analysis from the entire dirty data of visible light (red, green and blue) and filters 420 to 720 nm with 20 nm increments. Overall, the collected touch surface samples (N = 156) indicated the need for cleaning in some locations by the high culturable bacteria and adenosine triphosphate counts despite the lack of visible dirt. Examples of such locations were toilet door lock knobs and busy registration desk armchairs. Thus, the studied optical imaging system utilizing the safe visible light area shows a promising method for touch surface cleanliness evaluation in real-life environments.
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Affiliation(s)
- Jenni Inkinen
- Aalto University, School of Science, Department of Applied PhysicsComplex Systems and MaterialsAaltoFinland
| | - Merja Ahonen
- Satakunta University of Applied Sciences, Faculty of TechnologyWANDER Nordic Water and Materials InstituteRaumaFinland
| | - Evgenia Iakovleva
- Aalto University, School of Science, Department of Applied PhysicsComplex Systems and MaterialsAaltoFinland
| | - Pasi Karppinen
- Aalto University, School of Science, Department of Applied PhysicsComplex Systems and MaterialsAaltoFinland
| | - Eelis Mielonen
- Aalto University, School of Science, Department of Applied PhysicsComplex Systems and MaterialsAaltoFinland
| | - Riika Mäkinen
- Satakunta University of Applied Sciences, Faculty of TechnologyWANDER Nordic Water and Materials InstituteRaumaFinland
| | - Katriina Mannonen
- Satakunta University of Applied Sciences, Faculty of TechnologyWANDER Nordic Water and Materials InstituteRaumaFinland
| | - Juha Koivisto
- Aalto University, School of Science, Department of Applied PhysicsComplex Systems and MaterialsAaltoFinland
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Vercauteren T, Unberath M, Padoy N, Navab N. CAI4CAI: The Rise of Contextual Artificial Intelligence in Computer Assisted Interventions. PROCEEDINGS OF THE IEEE. INSTITUTE OF ELECTRICAL AND ELECTRONICS ENGINEERS 2020; 108:198-214. [PMID: 31920208 PMCID: PMC6952279 DOI: 10.1109/jproc.2019.2946993] [Citation(s) in RCA: 41] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/01/2019] [Revised: 09/12/2019] [Accepted: 10/04/2019] [Indexed: 05/10/2023]
Abstract
Data-driven computational approaches have evolved to enable extraction of information from medical images with a reliability, accuracy and speed which is already transforming their interpretation and exploitation in clinical practice. While similar benefits are longed for in the field of interventional imaging, this ambition is challenged by a much higher heterogeneity. Clinical workflows within interventional suites and operating theatres are extremely complex and typically rely on poorly integrated intra-operative devices, sensors, and support infrastructures. Taking stock of some of the most exciting developments in machine learning and artificial intelligence for computer assisted interventions, we highlight the crucial need to take context and human factors into account in order to address these challenges. Contextual artificial intelligence for computer assisted intervention, or CAI4CAI, arises as an emerging opportunity feeding into the broader field of surgical data science. Central challenges being addressed in CAI4CAI include how to integrate the ensemble of prior knowledge and instantaneous sensory information from experts, sensors and actuators; how to create and communicate a faithful and actionable shared representation of the surgery among a mixed human-AI actor team; how to design interventional systems and associated cognitive shared control schemes for online uncertainty-aware collaborative decision making ultimately producing more precise and reliable interventions.
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Affiliation(s)
- Tom Vercauteren
- School of Biomedical Engineering & Imaging SciencesKing’s College LondonLondonWC2R 2LSU.K.
| | - Mathias Unberath
- Department of Computer ScienceJohns Hopkins UniversityBaltimoreMD21218USA
| | - Nicolas Padoy
- ICube institute, CNRS, IHU Strasbourg, University of Strasbourg67081StrasbourgFrance
| | - Nassir Navab
- Fakultät für InformatikTechnische Universität München80333MunichGermany
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57
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Halicek M, Dormer JD, Little JV, Chen AY, Myers L, Sumer BD, Fei B. Hyperspectral Imaging of Head and Neck Squamous Cell Carcinoma for Cancer Margin Detection in Surgical Specimens from 102 Patients Using Deep Learning. Cancers (Basel) 2019; 11:E1367. [PMID: 31540063 PMCID: PMC6769839 DOI: 10.3390/cancers11091367] [Citation(s) in RCA: 50] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2019] [Revised: 09/04/2019] [Accepted: 09/12/2019] [Indexed: 01/27/2023] Open
Abstract
Surgical resection of head and neck (H and N) squamous cell carcinoma (SCC) may yield inadequate surgical cancer margins in 10 to 20% of cases. This study investigates the performance of label-free, reflectance-based hyperspectral imaging (HSI) and autofluorescence imaging for SCC detection at the cancer margin in excised tissue specimens from 102 patients and uses fluorescent dyes for comparison. Fresh surgical specimens (n = 293) were collected during H and N SCC resections (n = 102). The tissue specimens were imaged with reflectance-based HSI and autofluorescence imaging and afterwards with two fluorescent dyes for comparison. A histopathological ground truth was made. Deep learning tools were developed to detect SCC with new patient samples (inter-patient) and machine learning for intra-patient tissue samples. Area under the curve (AUC) of the receiver-operator characteristic was used as the main evaluation metric. Additionally, the performance was estimated in mm increments circumferentially from the tumor-normal margin. In intra-patient experiments, HSI classified conventional SCC with an AUC of 0.82 up to 3 mm from the cancer margin, which was more accurate than proflavin dye and autofluorescence (both p < 0.05). Intra-patient autofluorescence imaging detected human papilloma virus positive (HPV+) SCC with an AUC of 0.99 at 3 mm and greater accuracy than proflavin dye (p < 0.05). The inter-patient results showed that reflectance-based HSI and autofluorescence imaging outperformed proflavin dye and standard red, green, and blue (RGB) images (p < 0.05). In new patients, HSI detected conventional SCC in the larynx, oropharynx, and nasal cavity with 0.85-0.95 AUC score, and autofluorescence imaging detected HPV+ SCC in tonsillar tissue with 0.91 AUC score. This study demonstrates that label-free, reflectance-based HSI and autofluorescence imaging methods can accurately detect the cancer margin in ex-vivo specimens within minutes. This non-ionizing optical imaging modality could aid surgeons and reduce inadequate surgical margins during SCC resections.
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Affiliation(s)
- Martin Halicek
- Department of Bioengineering, The University of Texas at Dallas, Richardson, TX 75080, USA
- Department of Biomedical Engineering, Emory University and Georgia Institute of Technology, Atlanta, GA 30329, USA
| | - James D Dormer
- Department of Bioengineering, The University of Texas at Dallas, Richardson, TX 75080, USA
| | - James V Little
- Department of Pathology and Laboratory Medicine, Emory University School of Medicine, Atlanta, GA 30322, USA
| | - Amy Y Chen
- Department of Otolaryngology, Emory University School of Medicine, Atlanta, GA 30322, USA
| | - Larry Myers
- Department of Otolaryngology, The University of Texas Southwestern Medical Center, Dallas, TX 75390, USA
| | - Baran D Sumer
- Department of Otolaryngology, The University of Texas Southwestern Medical Center, Dallas, TX 75390, USA
| | - Baowei Fei
- Department of Bioengineering, The University of Texas at Dallas, Richardson, TX 75080, USA.
- Advanced Imaging Research Center, The University of Texas Southwestern Medical Center, Dallas, TX 75390, USA.
- Department of Radiology, The University of Texas Southwestern Medical Center, Dallas, TX 75390, USA.
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58
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Pruimboom T, van Kuijk SMJ, Qiu SS, van den Bos J, Wieringa FP, van der Hulst RRWJ, Schols RM. Optimizing Indocyanine Green Fluorescence Angiography in Reconstructive Flap Surgery: A Systematic Review and Ex Vivo Experiments. Surg Innov 2019; 27:103-119. [PMID: 31347468 DOI: 10.1177/1553350619862097] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
Background. Indocyanine green angiography (ICGA) offers the potential to provide objective data for evaluating tissue perfusion of flaps and reduce the incidence of postoperative necrosis. Consensus on ICGA protocols and information on factors that have an influence on fluorescence intensity is lacking. The aim of this article is to provide a comprehensive insight of in vivo and ex vivo evaluation of factors influencing the fluorescence intensity when using ICGA during reconstructive flap surgery. Methods. A systematic literature search was conducted to provide a comprehensive overview of currently used ICGA protocols in reconstructive flap surgery. Additionally, ex vivo experiments were performed to further investigate the practical influence of potentially relevant factors. Results. Factors that are considered important in ICGA protocols, as well as factors that might influence fluorescence intensity are scarcely reported. The ex vivo experiments demonstrated that fluorescence intensity was significantly related to dose, working distance, angle, penetration depth, and ambient light. Conclusions. This study identified factors that significantly influence the fluorescence intensity of ICGA. Applying a weight-adjusted ICG dose seems preferable over a fixed dose, recommended working distances are advocated, and the imaging head during ICGA should be positioned in an angle of 60° to 90° without significantly influencing the fluorescence intensity. All of these factors should be considered and reported when using ICGA for tissue perfusion assessment during reconstructive flap surgery.
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Affiliation(s)
- Tim Pruimboom
- Department of Plastic, Reconstructive and Hand Surgery, Maastricht University Medical Center, Maastricht, The Netherlands
| | - Sander M J van Kuijk
- Department of Clinical Epidemiology and Medical Technology Assessment, Maastricht University Medical Center, Maastricht, The Netherlands
| | - Shan S Qiu
- Department of Plastic, Reconstructive and Hand Surgery, Maastricht University Medical Center, Maastricht, The Netherlands
| | - Jacqueline van den Bos
- Department of Surgery, Maastricht University Medical Center, Maastricht, The Netherlands
| | - Fokko P Wieringa
- Faculty of Health Medicine and Life Sciences, Maastricht University, Maastricht, The Netherlands.,Imec Connected Health Solutions, Eindhoven, The Netherlands
| | - René R W J van der Hulst
- Department of Plastic, Reconstructive and Hand Surgery, Maastricht University Medical Center, Maastricht, The Netherlands
| | - Rutger M Schols
- Department of Plastic, Reconstructive and Hand Surgery, Maastricht University Medical Center, Maastricht, The Netherlands
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