Patterns in the co-occurrence of fish species in streams: the role of site suitability, morphology and phylogeny versus species interactions

Ictiofauna dos córregos do Parque Nacional de Brasília, bacia do Alto Rio Paraná, Distrito Federal, Brasil Central

O objetivo do presente estudo foi realizar o inventário da fauna íctica dos córregos do Parque Nacional de Brasília no Distrito Federal e caracterizar a estrutura da comunidade íctica ao longo dos cursos d'água. Foram amostrados córregos das sub-bacias do Bananal e Santa Maria/Torto na região hidrográfica do Alto Rio Paraná. Esses cursos d'água apresentam bom estado de preservação, evidenciado na integridade de suas características ambientais naturais e na manutenção dos componentes biológicos nativos. Um total de 8.614 indivíduos, distribuídos em quatro ordens e nove famílias, foram coletados. A ordem com maior número de espécies foi a Characiformes, seguida por Siluriformes. Das 28 espécies encontradas 11 são novas para a ciência. Apenas a espécie exótica Poecilia reticulata foi encontrada. Astyanax sp. e Hyphessobrycon balbus foram as espécies com maior distribuição na área de estudo e Knodus moenkhausii apresentou a maior abundância (64,5% dos indivíduos). Nos trechos com maiores larguras e profundidades foram encontrados maiores valores de riqueza de espécies e abundância de indivíduos.

Variação espacial e temporal nas assembléias de peixes de riachos na bacia do rio Guiraí, Alto Rio Paraná

O presente trabalho procura caracterizar as comunidades de peixes relacionando a variação espacial e temporal com a organização das comunidades de peixes em riachos da bacia do rio Guiraí, Alto Rio Paraná. As amostragens foram realizadas bimestralmente em sete riachos, entre outubro/2006 e agosto/2007 e, para a análise destes dados, utilizamos análises de agrupamento, de similaridade, de variância, de correspondência canônica e árvore de regressão. Foram coletadas 64 espécies de peixes e a variação espacial das comunidades estudadas se mostrou mais evidente que a variação temporal. As variáveis mais importantes na determinação da ocorrência das espécies foram a altitude do trecho amostrado, largura e profundidade do riacho e velocidade da água, o que indica que há interação de fatores em escala regional (altitude) com fatores locais (profundidade, velocidade e largura) na definição da composição de espécies em cada um dos riachos amostrados. O turnover na composição de espécies foi significativamente influenciado pela profundidade e altitude dos riachos. A diferenciação na riqueza e composição de espécies entre os trechos superiores e inferiores da bacia pode permitir o incremento da riqueza em nível regional (bacia hidrográfica) através da diminuição da sobreposição de nichos, permitindo a manutenção de subconjuntos populacionais (para as espécies de distribuição ampla) que podem resistir melhor às alterações antrópicas na estrutura dos habitats.

Emerging patterns in the comparative analysis of phylogenetic community structure

The analysis of the phylogenetic structure of communities can help reveal contemporary ecological interactions, as well as link community ecology with biogeography and the study of character evolution. The number of studies employing this broad approach has increased to the point where comparison of their results can now be used to highlight successes and deficiencies in the approach, and to detect emerging patterns in community organization. We review studies of the phylogenetic structure of communities of different major taxa and trophic levels, across different spatial and phylogenetic scales, and using different metrics and null models. Twenty-three of 39 studies (59%) find evidence for phylogenetic clustering in contemporary communities, but terrestrial and/or plant systems are heavily over-represented among published studies. Experimental investigations, although uncommon at present, hold promise for unravelling mechanisms underlying the phylogenetic community structure patterns observed in community surveys. We discuss the relationship between metrics of phylogenetic clustering and tree balance and explore the various emerging biases in taxonomy and pitfalls of scale. Finally, we look beyond one-dimensional metrics of phylogenetic structure towards multivariate descriptors that better capture the variety of ecological behaviours likely to be exhibited in communities of species with hundreds of millions of years of independent evolution.

Functional characters combined with null models reveal inconsistency in mechanisms of species turnover in lacustrine fish communities

Functional characters have the potential to act as indicators of species turnover between local communities. Null models provide a powerful statistical approach to test for patterns using functional character information. A combined null model/functional character approach provides the ability to distinguish between the effect of competition and environmental filtering on species turnover. We measured 13 functional characters relating directly to resource use for the fish species found in French lakes. We combined this functional character data with a null model approach to test whether co-occurring species overlapped more or less than expected at random for four primary niche axes. We used an environmentally constrained null model approach to determine if the same mechanisms were responsible for species turnover at different sections of the altitudinal gradient. Functional diversity indices were used to examine the variation in functional character diversity with altitude, as a test of the hypothesis that competitive intensity decreases with increasing environmental adversity. The unconstrained null model showed that environmental filtering was the dominant influence on species turnover between lakes. In the constrained null model, there was much less evidence for environmental filtering, emphasising the strong effect of altitude on turnover in functional character values between local communities. Different results were obtained for low-altitude and high-altitude lake subsets, with more evidence for the effect of environmental filtering being found in the high-altitude lakes. This demonstrates that different processes may influence species turnover throughout an environmental gradient. Functional diversity values showed a slight decrease with altitude, indicating that there was only weak evidence that competitive intensity decreased with increasing altitude. Variation resource availability and environmental stress probably cause the observed turnover in functional characters along the altitudinal gradient, though the effects of dispersal limitation and species introductions in high-altitude lakes cannot be ruled out.

Environmental factors predicting fish community structure in two neotropical rivers in Brazil

In order to assess the organization patterns of the fish communities in the Jogui and Iguatemi rivers, we collected fish with gill nets tri-monthly from November 1999 to August 2000. Hypostomus ancistroides and Parauchenipterus galeatus were the most abundant species in the Jogui and Iguatemi rivers, respectively. Longitudinal variation was more important than seasonal in determining the species composition in both rivers, and the difference between seasons was not statistically significant. Altitude was the most important factor determining species distribution.

The role of environmental and spatial processes in structuring lake communities from bacteria to fish

We assessed the relative roles of local environmental conditions and dispersal on community structure in a landscape of lakes for the major trophic groups. We use taxonomic presence-absence and abundance data for bacteria, phytoplankton, zooplankton, and fish from 18 lakes in southern Quebec, Canada. The question of interest was whether communities composed of organisms with more limited dispersal abilities, because of size and life history (zooplankton and fish) would show a different effect of lake distribution than communities composed of good dispersers (bacteria and phytoplankton). We examine the variation in structure attributable to local environmental (i.e., lake chemical and physical variables) vs. dispersal predictors (i.e., overland and watercourse distances between lakes) using variation partitioning techniques. Overall, we show that less motile species (crustacean zooplankton and fish) are better predicted by spatial factors than by local environmental ones. Furthermore, we show that for zooplankton abundances, both overland and watercourse dispersal pathways are equally strong, though they may select for different components of the community, while for fish, only watercourses are relevant dispersal pathways. These results suggest that crustacean zooplankton and fish are more constrained by dispersal and therefore more likely to operate as a metacommunity than are bacteria and phytoplankton within this studied landscape.

In search of quorum effects in metacommunity structure: species co-occurrence analyses

Alternative models of community assembly emphasize regional, stochastic, dispersal-based processes or local, deterministic, niche-based processes. Community ecology's historical focus on local processes implicitly assumes that local processes surpass regional processes over time or across space to derive nonrandom metacommunity structure (i.e., a quorum effect). Quorum effects are expected late in succession among nearby sites, whereas quorum effects are not expected early in succession among distant sites. I conducted a meta-analysis of zooplankton data sets encompassing time scales of one to thousands of years and spatial scales of <1 m to thousands of kilometers. Species co-occurrence analyses statistically evaluated presence/absence patterns relative to random patterns obtained with Monte Carlo null models. A series of weighted analyses was conducted and alternative randomization algorithms and null models were evaluated. Most zooplankton metacommunities were randomly structured in unweighted analyses, and the distribution of significant structure did not follow quorum effect predictions. Weighted analyses (e.g., by habitat area) revealed significant, nonrandom structure in most zooplankton metacommunities, but the distribution of significant structure still did not adhere well to quorum effect predictions. Finally, additional weighting for study scale (number of sites) nullified most significant area-weighted structure, and again, the distribution of significant structure did not follow quorum effect predictions. Overall, a quorum effect was not supported, perhaps related to zooplankton life histories and energetics and/or the quorum effect itself. Results at the presence/absence level of resolution indicated that local processes did not generally override regional processes over time or across space to drive community structure. A full integration of dispersal- and niche-based concepts in metacommunity dynamics will be most fruitful for unraveling community assembly. Species co-occurrence analyses were scale dependent (habitat area and study size). Future analyses should use weights for important factors (e.g., habitat area), and meta-analyses should include study scale as an additional factor contributing to apparent patterns.

Variation partitioning of species data matrices: estimation and comparison of fractions

Establishing relationships between species distributions and environmental characteristics is a major goal in the search for forces driving species distributions. Canonical ordinations such as redundancy analysis and canonical correspondence analysis are invaluable tools for modeling communities through environmental predictors. They provide the means for conducting direct explanatory analysis in which the association among species can be studied according to their common and unique relationships with the environmental variables and other sets of predictors of interest, such as spatial variables. Variation partitioning can then be used to test and determine the likelihood of these sets of predictors in explaining patterns in community structure. Although variation partitioning in canonical analysis is routinely used in ecological analysis, no effort has been reported in the literature to consider appropriate estimators so that comparisons between fractions or, eventually, between different canonical models are meaningful. In this paper, we show that variation partitioning as currently applied in canonical analysis is biased. We present appropriate unbiased estimators. In addition, we outline a statistical test to compare fractions in canonical analysis. The question addressed by the test is whether two fractions of variation are significantly different from each other. Such assessment provides an important step toward attaining an understanding of the factors patterning community structure. The test is shown to have correct Type I. error rates and good power for both redundancy analysis and canonical correspondence analysis.

SPATIAL MODELING IN ECOLOGY: THE FLEXIBILITY OF EIGENFUNCTION SPATIAL ANALYSES

Recently, analytical approaches based on the eigenfunctions of spatial configuration matrices have been proposed in order to consider explicitly spatial predictors. The present study demonstrates the usefulness of eigenfunctions in spatial modeling applied to ecological problems and shows equivalencies of and differences between the two current implementations of this methodology. The two approaches in this category are the distance-based (DB) eigenvector maps proposed by P. Legendre and his colleagues, and spatial filtering based upon geographic connectivity matrices (i.e., topology-based; CB) developed by D. A. Griffith and his colleagues. In both cases, the goal is to create spatial predictors that can be easily incorporated into conventional regression models. One important advantage of these two approaches over any other spatial approach is that they provide a flexible tool that allows the full range of general and generalized linear modeling theory to be applied to ecological and geographical problems in the presence of nonzero spatial autocorrelation.

Parasite species coexistence and limiting similarity: a multiscale look at phylogenetic, functional and reproductive distances

The factors that control biodiversity have been the focus of numerous recent investigations; these include species interactions, speciation, environmental gradients and heterogeneity, all of these operating differently at each observation scale. We used a null model to examine the influence of two forces shaping the community structure of Dactylogyrus species parasitic on roach (Rutilus rutilus) gills: interspecific competition that might prevent the coexistence of the most similar species and environmental filters that might result in the most similar species coexisting together. The study was carried out on two sets of fish from two different localities in the Morava river basin (Czech Republic) to evaluate the consistency of the results across host populations, and at three different scales of observation to test for the scale dependence of assembly rules. In decreasing order, from largest to smallest, the three spatial scales investigated were: the individual fish, the individual gill arch and individual sections of each gill arch. The similarity between pairs of parasite species was measured using three different criteria: (1) phylogeny, (2) quantitative functional traits consisting of parasite size and morphometric measurements of the attachment organ's sclerotized parts and (3) qualitative attributes of reproductive organs. First, our study reveals a strong conservatism of ecological characters for the nine Dactylogyrus parasite species, in particular regarding the attributes of their copulatory organs. Second, our study did not find any limitation of similarity among coexisting Dactylogyrus species due to interspecific competition, irrespective of the scale and the similarity measures considered. Conversely, our results support the niche filtering hypothesis, preventing the co-occurrence of species too dissimilar from one another. This process is particularly apparent at the scale of the individual fish and for functional traits associated with the hard parts of the parasites' attachment organs. In both localities, the Dactylogyrus species that occur on the same fish individuals tend to have similar values for the haptor dimensions. Our study supports previous studies on monogenean parasite communities indicating a weak influence of competition as a structuring force, but it goes a step further by identifying environmental filtering as a key process shaping these communities.