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For: Strandberg E, Esteban-Martín S, Ulrich AS, Salgado J. Hydrophobic mismatch of mobile transmembrane helices: Merging theory and experiments. Biochim Biophys Acta 2012;1818:1242-9. [PMID: 22326890 DOI: 10.1016/j.bbamem.2012.01.023] [Citation(s) in RCA: 77] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/09/2011] [Revised: 01/23/2012] [Accepted: 01/25/2012] [Indexed: 10/14/2022]
Number Cited by Other Article(s)
51
Hydrophobic mismatch demonstrated for membranolytic peptides, and their use as molecular rulers to measure bilayer thickness in native cells. Sci Rep 2015;5:9388. [PMID: 25807192 PMCID: PMC5224518 DOI: 10.1038/srep09388] [Citation(s) in RCA: 45] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2014] [Accepted: 02/20/2015] [Indexed: 11/16/2022]  Open
52
Hinks J, Poh WH, Chu JJH, Loo JSC, Bazan GC, Hancock LE, Wuertz S. Oligopolyphenylenevinylene-conjugated oligoelectrolyte membrane insertion molecules selectively disrupt cell envelopes of Gram-positive bacteria. Appl Environ Microbiol 2015;81:1949-58. [PMID: 25576607 PMCID: PMC4345381 DOI: 10.1128/aem.03355-14] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2014] [Accepted: 12/26/2014] [Indexed: 12/11/2022]  Open
53
Dynamic regulation of lipid-protein interactions. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES 2015;1848:1849-59. [PMID: 25666872 DOI: 10.1016/j.bbamem.2015.01.019] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/25/2014] [Revised: 01/27/2015] [Accepted: 01/29/2015] [Indexed: 02/07/2023]
54
3D hydrophobic moment vectors as a tool to characterize the surface polarity of amphiphilic peptides. Biophys J 2015;106:2385-94. [PMID: 24896117 DOI: 10.1016/j.bpj.2014.04.020] [Citation(s) in RCA: 61] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2013] [Revised: 04/02/2014] [Accepted: 04/07/2014] [Indexed: 11/22/2022]  Open
55
Vanegas JM, Arroyo M. Force transduction and lipid binding in MscL: a continuum-molecular approach. PLoS One 2014;9:e113947. [PMID: 25437007 PMCID: PMC4250078 DOI: 10.1371/journal.pone.0113947] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2014] [Accepted: 10/30/2014] [Indexed: 01/22/2023]  Open
56
Liang Q, Wu QY, Wang ZY. Effect of hydrophobic mismatch on domain formation and peptide sorting in the multicomponent lipid bilayers in the presence of immobilized peptides. J Chem Phys 2014;141:074702. [DOI: 10.1063/1.4891931] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
57
Flinner N, Mirus O, Schleiff E. The influence of fatty acids on the GpA dimer interface by coarse-grained molecular dynamics simulation. Int J Mol Sci 2014;15:14247-68. [PMID: 25196522 PMCID: PMC4159849 DOI: 10.3390/ijms150814247] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2014] [Revised: 07/14/2014] [Accepted: 08/06/2014] [Indexed: 11/17/2022]  Open
58
Walther TH, Ulrich AS. Transmembrane helix assembly and the role of salt bridges. Curr Opin Struct Biol 2014;27:63-8. [DOI: 10.1016/j.sbi.2014.05.003] [Citation(s) in RCA: 36] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2014] [Revised: 05/08/2014] [Accepted: 05/09/2014] [Indexed: 10/25/2022]
59
Sparks KA, Gleason NJ, Gist R, Langston R, Greathouse DV, Koeppe RE. Comparisons of interfacial Phe, Tyr, and Trp residues as determinants of orientation and dynamics for GWALP transmembrane peptides. Biochemistry 2014;53:3637-45. [PMID: 24829070 PMCID: PMC4053069 DOI: 10.1021/bi500439x] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
60
Wadhwani P, Strandberg E, van den Berg J, Mink C, Bürck J, Ciriello RA, Ulrich AS. Dynamical structure of the short multifunctional peptide BP100 in membranes. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES 2014;1838:940-9. [DOI: 10.1016/j.bbamem.2013.11.001] [Citation(s) in RCA: 45] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/25/2013] [Revised: 10/25/2013] [Accepted: 11/01/2013] [Indexed: 11/26/2022]
61
Ion channel stability of Gramicidin A in lipid bilayers: Effect of hydrophobic mismatch. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES 2014;1838:328-38. [DOI: 10.1016/j.bbamem.2013.10.005] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/27/2013] [Revised: 09/20/2013] [Accepted: 10/03/2013] [Indexed: 11/18/2022]
62
Yeagle PL. Non-covalent binding of membrane lipids to membrane proteins. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES 2013;1838:1548-59. [PMID: 24269542 DOI: 10.1016/j.bbamem.2013.11.009] [Citation(s) in RCA: 111] [Impact Index Per Article: 10.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/25/2013] [Revised: 11/01/2013] [Accepted: 11/09/2013] [Indexed: 01/30/2023]
63
Gleason NJ, Greathouse DV, Grant CV, Opella SJ, Koeppe RE. Single tryptophan and tyrosine comparisons in the N-terminal and C-terminal interface regions of transmembrane GWALP peptides. J Phys Chem B 2013;117:13786-94. [PMID: 24111589 DOI: 10.1021/jp407542e] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
64
Rangamani P, Benjamini A, Agrawal A, Smit B, Steigmann DJ, Oster G. Small scale membrane mechanics. Biomech Model Mechanobiol 2013;13:697-711. [PMID: 24081650 DOI: 10.1007/s10237-013-0528-6] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2013] [Accepted: 09/05/2013] [Indexed: 11/28/2022]
65
Sánchez-Muñoz OL, Strandberg E, Esteban-Martín E, Grage SL, Ulrich AS, Salgado J. Canonical azimuthal rotations and flanking residues constrain the orientation of transmembrane helices. Biophys J 2013;104:1508-16. [PMID: 23561527 DOI: 10.1016/j.bpj.2013.02.030] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2012] [Revised: 01/31/2013] [Accepted: 02/20/2013] [Indexed: 12/22/2022]  Open
66
Free energy of WALP23 dimer association in DMPC, DPPC, and DOPC bilayers. Chem Phys Lipids 2013;169:95-105. [DOI: 10.1016/j.chemphyslip.2013.02.001] [Citation(s) in RCA: 100] [Impact Index Per Article: 9.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2012] [Revised: 01/30/2013] [Accepted: 02/01/2013] [Indexed: 11/23/2022]
67
Benjamini A, Smit B. Robust driving forces for transmembrane helix packing. Biophys J 2013;103:1227-35. [PMID: 22995495 DOI: 10.1016/j.bpj.2012.08.035] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2012] [Revised: 07/31/2012] [Accepted: 08/06/2012] [Indexed: 10/27/2022]  Open
68
Buried lysine, but not arginine, titrates and alters transmembrane helix tilt. Proc Natl Acad Sci U S A 2013;110:1692-5. [PMID: 23319623 DOI: 10.1073/pnas.1215400110] [Citation(s) in RCA: 79] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]  Open
69
Caputo GA. Analyzing the effects of hydrophobic mismatch on transmembrane α-helices using tryptophan fluorescence spectroscopy. Methods Mol Biol 2013;1063:95-116. [PMID: 23975773 DOI: 10.1007/978-1-62703-583-5_5] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
70
Computational Studies of Biomembrane Systems: Theoretical Considerations, Simulation Models, and Applications. FROM SINGLE MOLECULES TO NANOSCOPICALLY STRUCTURED MATERIALS 2013. [DOI: 10.1007/12_2013_258] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
71
Ijäs HK, Lönnfors M, Nyholm TKM. Sterol affinity for phospholipid bilayers is influenced by hydrophobic matching between lipids and transmembrane peptides. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES 2012;1828:932-7. [PMID: 23220446 DOI: 10.1016/j.bbamem.2012.11.034] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/03/2012] [Revised: 11/29/2012] [Accepted: 11/30/2012] [Indexed: 01/04/2023]
72
Rankenberg JM, Vostrikov VV, Greathouse DV, Grant CV, Opella SJ, Koeppe RE. Properties of membrane-incorporated WALP peptides that are anchored on only one end. Biochemistry 2012;51:10066-74. [PMID: 23171005 DOI: 10.1021/bi301394z] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
73
Jämbeck JPM, Lyubartsev AP. An Extension and Further Validation of an All-Atomistic Force Field for Biological Membranes. J Chem Theory Comput 2012;8:2938-48. [PMID: 26592132 DOI: 10.1021/ct300342n] [Citation(s) in RCA: 346] [Impact Index Per Article: 28.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
74
Balleza D. Mechanical properties of lipid bilayers and regulation of mechanosensitive function: from biological to biomimetic channels. Channels (Austin) 2012;6:220-33. [PMID: 22790280 DOI: 10.4161/chan.21085] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]  Open
75
Gofman Y, Haliloglu T, Ben-Tal N. The Transmembrane Helix Tilt May Be Determined by the Balance between Precession Entropy and Lipid Perturbation. J Chem Theory Comput 2012;8:2896-2904. [PMID: 24932138 PMCID: PMC4053537 DOI: 10.1021/ct300128x] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2012] [Indexed: 11/29/2022]
76
Grage SL, Strandberg E, Wadhwani P, Esteban-Martín S, Salgado J, Ulrich AS. Comparative analysis of the orientation of transmembrane peptides using solid-state 2H- and 15N-NMR: mobility matters. EUROPEAN BIOPHYSICS JOURNAL: EBJ 2012;41:475-82. [DOI: 10.1007/s00249-012-0801-0] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/14/2011] [Revised: 02/23/2012] [Accepted: 03/06/2012] [Indexed: 02/01/2023]
77
Gleason NJ, Vostrikov VV, Greathouse DV, Grant CV, Opella SJ, Koeppe RE. Tyrosine replacing tryptophan as an anchor in GWALP peptides. Biochemistry 2012;51:2044-53. [PMID: 22364236 DOI: 10.1021/bi201732e] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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