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Analysis of Deep Learning Techniques for Dental Informatics: A Systematic Literature Review. Healthcare (Basel) 2022; 10:healthcare10101892. [PMID: 36292339 PMCID: PMC9602147 DOI: 10.3390/healthcare10101892] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2022] [Revised: 08/30/2022] [Accepted: 08/31/2022] [Indexed: 12/04/2022] Open
Abstract
Within the ever-growing healthcare industry, dental informatics is a burgeoning field of study. One of the major obstacles to the health care system’s transformation is obtaining knowledge and insightful data from complex, high-dimensional, and diverse sources. Modern biomedical research, for instance, has seen an increase in the use of complex, heterogeneous, poorly documented, and generally unstructured electronic health records, imaging, sensor data, and text. There were still certain restrictions even after many current techniques were used to extract more robust and useful elements from the data for analysis. New effective paradigms for building end-to-end learning models from complex data are provided by the most recent deep learning technology breakthroughs. Therefore, the current study aims to examine the most recent research on the use of deep learning techniques for dental informatics problems and recommend creating comprehensive and meaningful interpretable structures that might benefit the healthcare industry. We also draw attention to some drawbacks and the need for better technique development and provide new perspectives about this exciting new development in the field.
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52
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Hybrid CNN-LSTM and modified wild horse herd Model-based prediction of genome sequences for genetic disorders. Biomed Signal Process Control 2022. [DOI: 10.1016/j.bspc.2022.103840] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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53
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Clustering-Based Fusion for Medical Information Retrieval. J Biomed Inform 2022; 135:104213. [DOI: 10.1016/j.jbi.2022.104213] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2021] [Revised: 09/17/2022] [Accepted: 09/24/2022] [Indexed: 10/31/2022]
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54
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Cheng Y, Wang A, Wu L. A Classification Method for Electronic Components Based on Siamese Network. SENSORS (BASEL, SWITZERLAND) 2022; 22:6478. [PMID: 36080937 PMCID: PMC9460278 DOI: 10.3390/s22176478] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/18/2022] [Revised: 08/18/2022] [Accepted: 08/25/2022] [Indexed: 06/15/2023]
Abstract
In the field of electronics manufacturing, electronic component classification facilitates the management and recycling of the functional and valuable electronic components in electronic waste. Current electronic component classification methods are mainly based on deep learning, which requires a large number of samples to train the model. Owing to the wide variety of electronic components, collecting datasets is a time-consuming and laborious process. This study proposed a Siamese network-based classification method to solve the electronic component classification problem for a few samples. First, an improved visual geometry group 16 (VGG-16) model was proposed as the feature extraction part of the Siamese neural network to improve the recognition performance of the model under small samples. Then, a novel channel correlation loss function that allows the model to learn the correlation between different channels in the feature map was designed to further improve the generalization performance of the model. Finally, the nearest neighbor algorithm was used to complete the classification work. The experimental results show that the proposed method can achieve high classification accuracy under small sample conditions and is robust for electronic components with similar appearances. This improves the classification quality of electronic components and reduces the training sample collection cost.
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Affiliation(s)
| | - Aimin Wang
- Correspondence: ; Tel.: +86-135-2266-2896
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55
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Baghdadi NA, Malki A, Magdy Balaha H, AbdulAzeem Y, Badawy M, Elhosseini M. Classification of breast cancer using a manta-ray foraging optimized transfer learning framework. PeerJ Comput Sci 2022; 8:e1054. [PMID: 36092017 PMCID: PMC9454783 DOI: 10.7717/peerj-cs.1054] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2022] [Accepted: 07/07/2022] [Indexed: 06/15/2023]
Abstract
Due to its high prevalence and wide dissemination, breast cancer is a particularly dangerous disease. Breast cancer survival chances can be improved by early detection and diagnosis. For medical image analyzers, diagnosing is tough, time-consuming, routine, and repetitive. Medical image analysis could be a useful method for detecting such a disease. Recently, artificial intelligence technology has been utilized to help radiologists identify breast cancer more rapidly and reliably. Convolutional neural networks, among other technologies, are promising medical image recognition and classification tools. This study proposes a framework for automatic and reliable breast cancer classification based on histological and ultrasound data. The system is built on CNN and employs transfer learning technology and metaheuristic optimization. The Manta Ray Foraging Optimization (MRFO) approach is deployed to improve the framework's adaptability. Using the Breast Cancer Dataset (two classes) and the Breast Ultrasound Dataset (three-classes), eight modern pre-trained CNN architectures are examined to apply the transfer learning technique. The framework uses MRFO to improve the performance of CNN architectures by optimizing their hyperparameters. Extensive experiments have recorded performance parameters, including accuracy, AUC, precision, F1-score, sensitivity, dice, recall, IoU, and cosine similarity. The proposed framework scored 97.73% on histopathological data and 99.01% on ultrasound data in terms of accuracy. The experimental results show that the proposed framework is superior to other state-of-the-art approaches in the literature review.
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Affiliation(s)
- Nadiah A. Baghdadi
- College of Nursing, Nursing Management and Education Department, Princess Nourah bint Abdulrahman University, Riyadh, Saudi Arabia
| | - Amer Malki
- College of Computer Science and Engineering, Taibah University, Yanbu, Saudi Arabia
| | - Hossam Magdy Balaha
- Computers and Control Systems Engineering Department, Faculty of Engineering, Mansoura University, Mansoura, Egypt
| | - Yousry AbdulAzeem
- Computer Engineering Department, Misr Higher Institute for Engineering and Technology, Mansoura, Egypt
| | - Mahmoud Badawy
- Computers and Control Systems Engineering Department, Faculty of Engineering, Mansoura University, Mansoura, Egypt
| | - Mostafa Elhosseini
- College of Computer Science and Engineering, Taibah University, Yanbu, Saudi Arabia
- Computers and Control Systems Engineering Department, Faculty of Engineering, Mansoura University, Mansoura, Egypt
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56
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Cao H. Entrepreneurship education-infiltrated computer-aided instruction system for college Music Majors using convolutional neural network. Front Psychol 2022; 13:900195. [PMID: 35928420 PMCID: PMC9343719 DOI: 10.3389/fpsyg.2022.900195] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2022] [Accepted: 07/01/2022] [Indexed: 11/18/2022] Open
Abstract
The purpose is to improve the teaching and learning efficiency of college Innovation and Entrepreneurship Education (IEE). Firstly, from the perspective of aesthetic education, this work designs the teacher and student sides of the Computer-aided Instruction (CAI) system. Secondly, the CAI model is implemented based on the weight sharing and local perception of the Convolutional Neural Network (CNN). Finally, the performance of the CNN-based CAI model is tested. Meanwhile, it analyses students' IEE experience under the proposed CAI model through a case study of Music Majors from Xi'an Conservatory of Music. The experimental data show that the CNN-based CAI model can respond quickly and stably when users access different functional modules, such as webpage browsing. The proposed CAI model increases students' entrepreneurial interest, skills, and knowledge by 55.62, 57.32, and 72.12%, respectively. Students' entrepreneurial practice ability has been improved by over 50.00%; such an increase in entrepreneurial practice ability has also shown individual differences. Thus, the proposed Music Majors-oriented IEE-infiltrated CAI model based on CNN improves students' entrepreneurial practice ability and reflects the positive experience of Music Majors on IEE. The finding provides references for the step-by-step identification of the CNN-based CAI model and has certain guiding significance for analyzing the effect of college IEE.
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Affiliation(s)
- Hong Cao
- School of Music and Dance, Hunan City University, Yiyang, China
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57
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Gong X, Zhao X, Fan L, Li T, Guo Y, Luo J. BUS-net: a bimodal ultrasound network for breast cancer diagnosis. INT J MACH LEARN CYB 2022. [DOI: 10.1007/s13042-022-01596-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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58
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To T, Gheshlaghi SH, Ye DH. Deep Learning for Breast Cancer Classification of Deep Ultraviolet Fluorescence Images toward Intra-Operative Margin Assessment. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2022; 2022:1891-1894. [PMID: 36086063 DOI: 10.1109/embc48229.2022.9871819] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Breast conserving surgery aims at the complete removal of malignant lesions while minimizing healthy tissue loss. To ensure the balance between complete resection of the cancer and conservation of healthy tissue, intra-operative margin assessment is necessary. Deep ultraviolet (DUV) fluorescence scanning microscope provides fast whole-surface-imaging (WSI) of excised tissue with contrast between malignant and normal tissues. Then, an automated breast cancer classification method on DUV images is required for intra-operative margin assessment. Deep learning shows the promising results in breast cancer classification, but limited DUV image dataset poses overfitting challenge to train the robust network. To tackle this challenge, we partition the DUV WSI image into small patches and extract pathological features for each patch from a pre-trained network using a transfer learning approach. We feed pathological features into a decision-tree-based classifier and fuse patch-level classification results based on regional importance to determine malignant or benign WSI. Experimental results on 60 DUV images show that our proposed method outperforms the standard deep learning classification in terms of improving the classification performance and identifying cancerous regions.
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59
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Mishra L, Verma S. Graph Attention Autoencoder Inspired CNN based Brain Tumor Classification using MRI. Neurocomputing 2022. [DOI: 10.1016/j.neucom.2022.06.107] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
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60
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Mu H, Sun R, Wang M, Chen Z. Spatio-temporal graph-based CNNs for anomaly detection in weakly-labeled videos. Inf Process Manag 2022. [DOI: 10.1016/j.ipm.2022.102983] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
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61
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Design of a Smart Elbow Brace as a Home-Based Rehabilitation Device. COMPUTATIONAL INTELLIGENCE AND NEUROSCIENCE 2022; 2022:3754931. [PMID: 35755722 PMCID: PMC9225837 DOI: 10.1155/2022/3754931] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/02/2022] [Accepted: 05/24/2022] [Indexed: 12/03/2022]
Abstract
Poststroke and traumatic elbow injuries are the most common cause of elbow stiffness, which results in loss of functional range of motion (ROM). Various studies support early mobilization of the elbow joint after injury or after surgery to reduce risks of elbow stiffness development. After hospitalization, patients are required to follow a long-term rehabilitation program during home recovery. Still, most patients do not adhere to their clinical therapy schedule due to either rehabilitation cost, social obligations, negligence, or lack of inspiration. Moreover, the numbers of therapists and assessment equipment are insufficient. This study introduces a smart elbow brace (SEB) as a home-based rehabilitation device that reduces regular in-patient rehabilitation costs and therapist workload and motivates patients to comply with the rehabilitation program that enhances the achievement of rehabilitation goals. Our device has two active degrees of freedom (2-DoF) that allow extension, flexion, pronation, and supination elbow motions. An extra sliding joint between forearm and wrist is added, which helps dump forces concentration at the elbow joint during extension-flexion movement. Mechanical design requirements, motion-tracking systems, and serious game development are described. The feasibility of a proposed SEB device is tested with five healthy subjects playing developed serious games with the device. The results show that subjects can attain maximum and minimum angles of flexion-extension and pronation-supination motion designed for elbow stiffness rehabilitation. The SEB device will be beneficial and be used at home as a complementary tool to support elbow stiffness rehabilitation during long-term home recovery.
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62
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Shape-Based Breast Lesion Classification Using Digital Tomosynthesis Images: The Role of Explainable Artificial Intelligence. APPLIED SCIENCES-BASEL 2022. [DOI: 10.3390/app12126230] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
Computer-aided diagnosis (CAD) systems can help radiologists in numerous medical tasks including classification and staging of the various diseases. The 3D tomosynthesis imaging technique adds value to the CAD systems in diagnosis and classification of the breast lesions. Several convolutional neural network (CNN) architectures have been proposed to classify the lesion shapes to the respective classes using a similar imaging method. However, not only is the black box nature of these CNN models questionable in the healthcare domain, but so is the morphological-based cancer classification, concerning the clinicians. As a result, this study proposes both a mathematically and visually explainable deep-learning-driven multiclass shape-based classification framework for the tomosynthesis breast lesion images. In this study, authors exploit eight pretrained CNN architectures for the classification task on the previously extracted regions of interests images containing the lesions. Additionally, the study also unleashes the black box nature of the deep learning models using two well-known perceptive explainable artificial intelligence (XAI) algorithms including Grad-CAM and LIME. Moreover, two mathematical-structure-based interpretability techniques, i.e., t-SNE and UMAP, are employed to investigate the pretrained models’ behavior towards multiclass feature clustering. The experimental results of the classification task validate the applicability of the proposed framework by yielding the mean area under the curve of 98.2%. The explanability study validates the applicability of all employed methods, mainly emphasizing the pros and cons of both Grad-CAM and LIME methods that can provide useful insights towards explainable CAD systems.
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63
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A System for a Real-Time Electronic Component Detection and Classification on a Conveyor Belt. APPLIED SCIENCES-BASEL 2022. [DOI: 10.3390/app12115608] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Abstract
The presented research addresses the real-time object detection problem with small and moving objects, specifically the surface-mount component on a conveyor. Detecting and counting small moving objects on the assembly line is a challenge. In order to meet the requirements of real-time applications, state-of-the-art electronic component detection and classification algorithms are implemented into powerful hardware systems. This work proposes a low-cost system with an embedded microcomputer to detect surface-mount components on a conveyor belt in real time. The system detects moving, packed, and unpacked surface-mount components. The system’s performance was experimentally investigated by implementing several object-detection algorithms. The system’s performance with different algorithm implementations was compared using mean average precision and inference time. The results of four different surface-mount components showed average precision scores of 97.3% and 97.7% for capacitor and resistor detection. The findings suggest that the system with the implemented YOLOv4-tiny algorithm on the Jetson Nano 4 GB microcomputer achieves a mean average precision score of 88.03% with an inference time of 56.4 ms and 87.98% mean average precision with 11.2 ms inference time on the Tesla P100 16 GB platform.
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64
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A hybrid classifier based on support vector machine and Jaya algorithm for breast cancer classification. Neural Comput Appl 2022. [DOI: 10.1007/s00521-022-07290-6] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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65
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Zhu Z, Lu S, Wang SH, Gorriz JM, Zhang YD. DSNN: A DenseNet-Based SNN for Explainable Brain Disease Classification. Front Syst Neurosci 2022; 16:838822. [PMID: 35720439 PMCID: PMC9204288 DOI: 10.3389/fnsys.2022.838822] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2021] [Accepted: 04/25/2022] [Indexed: 12/20/2022] Open
Abstract
Aims: Brain diseases refer to intracranial tissue and organ inflammation, vascular diseases, tumors, degeneration, malformations, genetic diseases, immune diseases, nutritional and metabolic diseases, poisoning, trauma, parasitic diseases, etc. Taking Alzheimer's disease (AD) as an example, the number of patients dramatically increases in developed countries. By 2025, the number of elderly patients with AD aged 65 and over will reach 7.1 million, an increase of nearly 29% over the 5.5 million patients of the same age in 2018. Unless medical breakthroughs are made, AD patients may increase from 5.5 million to 13.8 million by 2050, almost three times the original. Researchers have focused on developing complex machine learning (ML) algorithms, i.e., convolutional neural networks (CNNs), containing millions of parameters. However, CNN models need many training samples. A small number of training samples in CNN models may lead to overfitting problems. With the continuous research of CNN, other networks have been proposed, such as randomized neural networks (RNNs). Schmidt neural network (SNN), random vector functional link (RVFL), and extreme learning machine (ELM) are three types of RNNs. Methods: We propose three novel models to classify brain diseases to cope with these problems. The proposed models are DenseNet-based SNN (DSNN), DenseNet-based RVFL (DRVFL), and DenseNet-based ELM (DELM). The backbone of the three proposed models is the pre-trained "customize" DenseNet. The modified DenseNet is fine-tuned on the empirical dataset. Finally, the last five layers of the fine-tuned DenseNet are substituted by SNN, ELM, and RVFL, respectively. Results: Overall, the DSNN gets the best performance among the three proposed models in classification performance. We evaluate the proposed DSNN by five-fold cross-validation. The accuracy, sensitivity, specificity, precision, and F1-score of the proposed DSNN on the test set are 98.46% ± 2.05%, 100.00% ± 0.00%, 85.00% ± 20.00%, 98.36% ± 2.17%, and 99.16% ± 1.11%, respectively. The proposed DSNN is compared with restricted DenseNet, spiking neural network, and other state-of-the-art methods. Finally, our model obtains the best results among all models. Conclusions: DSNN is an effective model for classifying brain diseases.
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Affiliation(s)
- Ziquan Zhu
- School of Computing and Mathematical Sciences, University of Leicester, East Midlands, United Kingdom
| | - Siyuan Lu
- School of Computing and Mathematical Sciences, University of Leicester, East Midlands, United Kingdom
| | - Shui-Hua Wang
- School of Computing and Mathematical Sciences, University of Leicester, East Midlands, United Kingdom
- School of Computer Science and Technology, Henan Polytechnic University, Jiaozuo, China
| | - Juan Manuel Gorriz
- Department of Signal Theory, Networking and Communications, University of Granada, Granada, Spain
| | - Yu-Dong Zhang
- School of Computing and Mathematical Sciences, University of Leicester, East Midlands, United Kingdom
- School of Computer Science and Technology, Henan Polytechnic University, Jiaozuo, China
- Guangxi Key Laboratory of Trusted Software, Guilin University of Electronic Technology, Guilin, China
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66
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Voice Recognition and Evaluation of Vocal Music Based on Neural Network. COMPUTATIONAL INTELLIGENCE AND NEUROSCIENCE 2022; 2022:3466987. [PMID: 35634052 PMCID: PMC9142326 DOI: 10.1155/2022/3466987] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/03/2022] [Revised: 03/23/2022] [Accepted: 04/07/2022] [Indexed: 11/17/2022]
Abstract
Artistic voice is the artistic life of professional voice users. In the process of selecting and cultivating artistic performing talents, the evaluation of voice even occupies a very important position. Therefore, an appropriate evaluation of the artistic voice is crucial. With the development of art education, how to scientifically evaluate artistic voice training methods and fairly select artistic voice talents is an urgent need for objective evaluation of artistic voice. The current evaluation methods for artistic voices are time-consuming, laborious, and highly subjective. In the objective evaluation of artistic voice, the selection of evaluation acoustic parameters is very important. Attempt to extract the average energy, average frequency error, and average range error of singing voice by using speech analysis technology as the objective evaluation acoustic parameters, use neural network method to objectively evaluate the singing quality of artistic voice, and compare with the subjective evaluation of senior professional teachers. In this paper, voice analysis technology is used to extract the first formant, third formant, fundamental frequency, sound range, fundamental frequency perturbation, first formant perturbation, third formant perturbation, and average energy of singing acoustic parameters. By using BP neural network methods, the quality of singing was evaluated objectively and compared with the subjective evaluation of senior vocal professional teachers. The results show that the BP neural network method can accurately and objectively evaluate the quality of singing voice by using the evaluation parameters, which is helpful in scientifically guiding the selection and training of artistic voice talents.
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67
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Zeng F, Chen N, Yang D, Meng Z. Simplified-Boosting Ensemble Convolutional Network for Text Classification. Neural Process Lett 2022. [DOI: 10.1007/s11063-022-10843-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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68
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Shi Y, Wang Z, Du X, Gong B, Lu Y, Li L. Membrane fouling diagnosis of membrane components based on multi-feature information fusion. J Memb Sci 2022. [DOI: 10.1016/j.memsci.2022.120670] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
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69
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Robust graph learning with graph convolutional network. Inf Process Manag 2022. [DOI: 10.1016/j.ipm.2022.102916] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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70
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Zheng X, Cloutier RS. A Review of Image Classification Algorithms in IoT. EAI ENDORSED TRANSACTIONS ON INTERNET OF THINGS 2022. [DOI: 10.4108/eetiot.v7i28.562] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Abstract
With the advent of big data era and the enhancement of computing power, Deep Learning has swept the world. Based on Convolutional Neural Network (CNN) image classification technique broke the restriction of classical image classification methods, becoming the dominant algorithm of image classification. How to use CNN for image classification has turned into a hot spot. After systematically studying convolutional neural network and in-depth research of the application of CNN in computer vision, this research briefly introduces the mainstream structural models, strengths and shortcomings, time/space complexity, challenges that may be suffered during model training and associated solutions for image classification. This research also compares and analyzes the differences between different methods and their performance on commonly used data sets. Finally, the shortcomings of Deep Learning methods in image classification and possible future research directions are discussed.
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71
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Shen G, Jin X, Sun C, Li Q. Artificial Intelligence Radiotherapy Planning: Automatic Segmentation of Human Organs in CT Images Based on a Modified Convolutional Neural Network. Front Public Health 2022; 10:813135. [PMID: 35493368 PMCID: PMC9051073 DOI: 10.3389/fpubh.2022.813135] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2021] [Accepted: 03/24/2022] [Indexed: 11/13/2022] Open
Abstract
Objective:Precise segmentation of human organs and anatomic structures (especially organs at risk, OARs) is the basis and prerequisite for the treatment planning of radiation therapy. In order to ensure rapid and accurate design of radiotherapy treatment planning, an automatic organ segmentation technique was investigated based on deep learning convolutional neural network.MethodA deep learning convolutional neural network (CNN) algorithm called BCDU-Net has been modified and developed further by us. Twenty two thousand CT images and the corresponding organ contours of 17 types delineated manually by experienced physicians from 329 patients were used to train and validate the algorithm. The CT images randomly selected were employed to test the modified BCDU-Net algorithm. The weight parameters of the algorithm model were acquired from the training of the convolutional neural network.ResultThe average Dice similarity coefficient (DSC) of the automatic segmentation and manual segmentation of the human organs of 17 types reached 0.8376, and the best coefficient reached up to 0.9676. It took 1.5–2 s and about 1 h to automatically segment the contours of an organ in an image of the CT dataset for a patient and the 17 organs for the CT dataset with the method developed by us, respectively.ConclusionThe modified deep neural network algorithm could be used to automatically segment human organs of 17 types quickly and accurately. The accuracy and speed of the method meet the requirements of its application in radiotherapy.
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Affiliation(s)
- Guosheng Shen
- Institute of Modern Physics, Chinese Academy of Sciences, Lanzhou, China
- Key Laboratory of Basic Research on Heavy Ion Radiation Application in Medicine, Lanzhou, China
- Key Laboratory of Heavy Ion Radiation Biology and Medicine of Chinese Academy of Sciences, Lanzhou, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Xiaodong Jin
- Institute of Modern Physics, Chinese Academy of Sciences, Lanzhou, China
- Key Laboratory of Basic Research on Heavy Ion Radiation Application in Medicine, Lanzhou, China
- Key Laboratory of Heavy Ion Radiation Biology and Medicine of Chinese Academy of Sciences, Lanzhou, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Chao Sun
- Institute of Modern Physics, Chinese Academy of Sciences, Lanzhou, China
- Key Laboratory of Basic Research on Heavy Ion Radiation Application in Medicine, Lanzhou, China
- Key Laboratory of Heavy Ion Radiation Biology and Medicine of Chinese Academy of Sciences, Lanzhou, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Qiang Li
- Institute of Modern Physics, Chinese Academy of Sciences, Lanzhou, China
- Key Laboratory of Basic Research on Heavy Ion Radiation Application in Medicine, Lanzhou, China
- Key Laboratory of Heavy Ion Radiation Biology and Medicine of Chinese Academy of Sciences, Lanzhou, China
- University of Chinese Academy of Sciences, Beijing, China
- *Correspondence: Qiang Li
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72
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Zhang G, Sun B, Chen Z, Gao Y, Zhang Z, Li K, Yang W. Diabetic Retinopathy Grading by Deep Graph Correlation Network on Retinal Images Without Manual Annotations. Front Med (Lausanne) 2022; 9:872214. [PMID: 35492360 PMCID: PMC9046841 DOI: 10.3389/fmed.2022.872214] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2022] [Accepted: 03/18/2022] [Indexed: 11/20/2022] Open
Abstract
Background Diabetic retinopathy, as a severe public health problem associated with vision loss, should be diagnosed early using an accurate screening tool. While many previous deep learning models have been proposed for this disease, they need sufficient professional annotation data to train the model, requiring more expensive and time-consuming screening skills. Method This study aims to economize manual power and proposes a deep graph correlation network (DGCN) to develop automated diabetic retinopathy grading without any professional annotations. DGCN involves the novel deep learning algorithm of a graph convolutional network to exploit inherent correlations from independent retinal image features learned by a convolutional neural network. Three designed loss functions of graph-center, pseudo-contrastive, and transformation-invariant constrain the optimisation and application of the DGCN model in an automated diabetic retinopathy grading task. Results To evaluate the DGCN model, this study employed EyePACS-1 and Messidor-2 sets to perform grading results. It achieved an accuracy of 89.9% (91.8%), sensitivity of 88.2% (90.2%), and specificity of 91.3% (93.0%) on EyePACS-1 (Messidor-2) data set with a confidence index of 95% and commendable effectiveness on receiver operating characteristic (ROC) curve and t-SNE plots. Conclusion The grading capability of this study is close to that of retina specialists, but superior to that of trained graders, which demonstrates that the proposed DGCN provides an innovative route for automated diabetic retinopathy grading and other computer-aided diagnostic systems.
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Affiliation(s)
- Guanghua Zhang
- Department of Intelligence and Automation, Taiyuan University, Taiyuan, China
- Graphics and Imaging Laboratory, University of Girona, Girona, Spain
| | - Bin Sun
- Shanxi Eye Hospital, Taiyuan, China
| | - Zhixian Chen
- Department of Intelligence and Automation, Taiyuan University, Taiyuan, China
| | - Yuxi Gao
- Shanxi Finance and Taxation College, Taiyuan, China
| | | | - Keran Li
- The Laboratory of Artificial Intelligence and Bigdata in Ophthalmology, The Affiliated Eye Hospital of Nanjing Medical University, Nanjing, China
- Keran Li,
| | - Weihua Yang
- The Laboratory of Artificial Intelligence and Bigdata in Ophthalmology, The Affiliated Eye Hospital of Nanjing Medical University, Nanjing, China
- *Correspondence: Weihua Yang,
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73
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Zhang H. A Review of Convolutional Neural Network Development in Computer Vision. EAI ENDORSED TRANSACTIONS ON INTERNET OF THINGS 2022. [DOI: 10.4108/eetiot.v7i28.445] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Abstract
Convolutional neural networks have made admirable progress in computer vision. As a fast-growing computer field, CNNs are one of the classical and widely used network structures. The Internet of Things (IoT) has gotten a lot of attention in recent years. This has directly led to the vigorous development of AI technology, such as the intelligent luggage security inspection system developed by the IoT, intelligent fire alarm system, driverless car, drone technology, and other cutting-edge directions. This paper first outlines the structure of CNNs, including the convolutional layer, the downsampling layer, and the fully connected layer, all of which play an important role. Then some different modules of classical networks are described, and these modules are rapidly driving the development of CNNs. And then the current state of CNNs research in image classification, object segmentation, and object detection is discussed.
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74
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Feature Importance Score-Based Functional Link Artificial Neural Networks for Breast Cancer Classification. BIOMED RESEARCH INTERNATIONAL 2022; 2022:2696916. [PMID: 35411308 PMCID: PMC8994690 DOI: 10.1155/2022/2696916] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/07/2022] [Revised: 03/04/2022] [Accepted: 03/08/2022] [Indexed: 12/31/2022]
Abstract
Growth of malignant tumors in the breast results in breast cancer. It is a cause of death of many women across the world. As a part of treatment, a woman might have to go through painful surgery and chemotherapy that may further lead to severe side effects. However, it is possible to cure it if it is diagnosed in the initial stage. Recently, many researchers have leveraged machine learning (ML) techniques to classify breast cancer. However, these methods are computationally expensive and prone to the overfitting problem. A simple single-layer neural network, i.e., functional link artificial neural network (FLANN), is proposed to overcome this problem. Further, the F-score is used to reduce the issue of overfitting by selecting features having a higher significance level. In this paper, FLANN is proposed to classify breast cancer using Wisconsin Breast Cancer Dataset (WBCD) (with 699 samples) and Wisconsin Diagnostic Breast Cancer (WDBC) (with 569 samples) datasets. Experimental results reveal that the proposed models can diagnose breast cancer with higher performance. The proposed model can be used in the early breast cancer diagnosis with 99.41% accuracy.
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75
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Maji D, Maiti S, Dhara AK, Sarkar G. Automatic grading of retinal blood vessel tortuosity using Modified CNN in deep retinal image diagnosis. Biomed Signal Process Control 2022. [DOI: 10.1016/j.bspc.2022.103514] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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76
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Wang K, Dou Y, Sun T, Qiao P, Wen D. An automatic learning rate decay strategy for stochastic gradient descent optimization methods in neural networks. INT J INTELL SYST 2022. [DOI: 10.1002/int.22883] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Kang Wang
- National Laboratory for Parallel and Distributed Processing, School of Computer National University of Defense Technology Changsha China
| | - Yong Dou
- National Laboratory for Parallel and Distributed Processing, School of Computer National University of Defense Technology Changsha China
| | - Tao Sun
- National Laboratory for Parallel and Distributed Processing, School of Computer National University of Defense Technology Changsha China
| | - Peng Qiao
- National Laboratory for Parallel and Distributed Processing, School of Computer National University of Defense Technology Changsha China
| | - Dong Wen
- National Laboratory for Parallel and Distributed Processing, School of Computer National University of Defense Technology Changsha China
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77
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Classification of Breast Cancer Images by Implementing Improved DCNN with Artificial Fish School Model. COMPUTATIONAL INTELLIGENCE AND NEUROSCIENCE 2022; 2022:6785707. [PMID: 35242181 PMCID: PMC8888076 DOI: 10.1155/2022/6785707] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/13/2021] [Revised: 01/21/2022] [Accepted: 01/28/2022] [Indexed: 11/17/2022]
Abstract
Breast cancer is an important factor affecting human health. This issue has various diagnosis process which were evolved such as mammography, fine needle aspirate, and surgical biopsy. These techniques use pathological breast cancer images for diagnosis. Breast cancer surgery allows the forensic doctor to histologist to access the microscopic level of breast tissues. The conventional method uses an optimized radial basis neural network using a cuckoo search algorithm. Existing radial basis neural network techniques utilized feature extraction and reduction parts separately. It is proposed that it overcomes the CNN approach for all the feature extraction and classification process to reduce time complexity. In this proposed method, a convolutional neural network is proposed based on an artificial fish school algorithm. The breast cancer image dataset is taken from cancer imaging archives. In the preprocessing step of classification, the breast cancer image is filtered with the support of a wiener filter for classification. The convolutional neural network has set the intense data of an image and is used to remove the features. After executing the extraction procedure, the reduction process is performed to speed up the train and test data processing. Here, the artificial fish school optimization algorithm is utilized to give the direct training data to the deep convolutional neural network. The extraction, reduction, and classification of features are utilized in the single deep convolutional neural network process. In this process, the optimization technique helps to decrease the error rate and increases the performance efficiency by finding the number of epochs and training images to the Deep CNN. In this system, the normal, benign, and malignant tissues are predicted. By comparing the existing RBF technique with the cuckoo search algorithm, the presented model attains the outcome in the way of sensitivity, accuracy, specificity, F1 score, and recall.
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78
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Learning from word semantics to sentence syntax by graph convolutional networks for aspect-based sentiment analysis. INTERNATIONAL JOURNAL OF DATA SCIENCE AND ANALYTICS 2022. [DOI: 10.1007/s41060-022-00315-2] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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79
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Assari Z, Mahloojifar A, Ahmadinejad N. Discrimination of benign and malignant solid breast masses using deep residual learning-based bimodal computer-aided diagnosis system. Biomed Signal Process Control 2022. [DOI: 10.1016/j.bspc.2021.103453] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
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80
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Nanglia S, Ahmad M, Ali Khan F, Jhanjhi N. An enhanced Predictive heterogeneous ensemble model for breast cancer prediction. Biomed Signal Process Control 2022. [DOI: 10.1016/j.bspc.2021.103279] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
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81
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Kumar A, Tripathi AR, Satapathy SC, Zhang YD. SARS-Net: COVID-19 detection from chest x-rays by combining graph convolutional network and convolutional neural network. PATTERN RECOGNITION 2022; 122:108255. [PMID: 34456369 PMCID: PMC8386119 DOI: 10.1016/j.patcog.2021.108255] [Citation(s) in RCA: 34] [Impact Index Per Article: 17.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/10/2021] [Revised: 08/05/2021] [Accepted: 08/12/2021] [Indexed: 05/19/2023]
Abstract
COVID-19 has emerged as one of the deadliest pandemics that has ever crept on humanity. Screening tests are currently the most reliable and accurate steps in detecting severe acute respiratory syndrome coronavirus in a patient, and the most used is RT-PCR testing. Various researchers and early studies implied that visual indicators (abnormalities) in a patient's Chest X-Ray (CXR) or computed tomography (CT) imaging were a valuable characteristic of a COVID-19 patient that can be leveraged to find out virus in a vast population. Motivated by various contributions to open-source community to tackle COVID-19 pandemic, we introduce SARS-Net, a CADx system combining Graph Convolutional Networks and Convolutional Neural Networks for detecting abnormalities in a patient's CXR images for presence of COVID-19 infection in a patient. In this paper, we introduce and evaluate the performance of a custom-made deep learning architecture SARS-Net, to classify and detect the Chest X-ray images for COVID-19 diagnosis. Quantitative analysis shows that the proposed model achieves more accuracy than previously mentioned state-of-the-art methods. It was found that our proposed model achieved an accuracy of 97.60% and a sensitivity of 92.90% on the validation set.
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Affiliation(s)
- Aayush Kumar
- School of Computer Engineering, Kalinga Institute of Industrial Technology (Deemed to Be University), Bhubaneswar, Odisha, 751024, India
| | - Ayush R Tripathi
- School of Computer Engineering, Kalinga Institute of Industrial Technology (Deemed to Be University), Bhubaneswar, Odisha, 751024, India
| | - Suresh Chandra Satapathy
- School of Computer Engineering, Kalinga Institute of Industrial Technology (Deemed to Be University), Bhubaneswar, Odisha, 751024, India
| | - Yu-Dong Zhang
- Department of Informatics, University of Leicester, Leicester LE1 7RH, UK
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82
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Subasree S, Sakthivel N, Tripathi K, Agarwal D, Tyagi AK. Combining the advantages of radiomic features based feature extraction and hyper parameters tuned RERNN using LOA for breast cancer classification. Biomed Signal Process Control 2022. [DOI: 10.1016/j.bspc.2021.103354] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
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83
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Huong A, Tay K, Gan K, Ngu X. A hierarchical optimisation framework for pigmented lesion diagnosis. CAAI TRANSACTIONS ON INTELLIGENCE TECHNOLOGY 2022. [DOI: 10.1049/cit2.12073] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022] Open
Affiliation(s)
- Audrey Huong
- Department of Electronic Engineering Universiti Tun Hussein Onn Malaysia Parit Raja Malaysia
| | - KimGaik Tay
- Department of Electronic Engineering Universiti Tun Hussein Onn Malaysia Parit Raja Malaysia
| | - KokBeng Gan
- Department of Electrical, Electronic & Systems Engineering Universiti Kebangsaan Malaysia Bangi Malaysia
| | - Xavier Ngu
- Institute of Integrated Engineering Universiti Tun Hussein Onn Malaysia Parit Raja Malaysia
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84
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Hassam M, Khan MA, Armghan A, Althubiti SA, Alhaisoni M, Alqahtani A, Kadry S, Kim Y. A Single Stream Modified MobileNet V2 and Whale Controlled Entropy Based Optimization Framework for Citrus Fruit Diseases Recognition. IEEE ACCESS 2022; 10:91828-91839. [DOI: 10.1109/access.2022.3201338] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 08/25/2024]
Affiliation(s)
- Muhammad Hassam
- Department of Computer Science, HITEC University, Taxila, Pakistan
| | | | - Ammar Armghan
- Department of Electrical Engineering, College of Engineering, Jouf University, Sakakah, Saudi Arabia
| | - Sara A. Althubiti
- Department of Computer Science, College of Computer and Information Sciences, Majmaah University, Al-Majmaah, Saudi Arabia
| | - Majed Alhaisoni
- Computer Sciences Department, College of Computer and Information Sciences, Princess Nourah Bint Abdulrahman University, Riyadh, Saudi Arabia
| | - Abdullah Alqahtani
- College of Computer Engineering and Sciences, Prince Sattam Bin Abdulaziz University, Al-Kharj, Saudi Arabia
| | - Seifedine Kadry
- Department of Applied Data Science, Noroff University College, Kristinasand, Norway
| | - Yongsung Kim
- Department of Technology Education, Chungnam National University, Yuseong-gu, Daejeon, South Korea
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85
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Deep Learning on Histopathology Images for Breast Cancer Classification: A Bibliometric Analysis. Healthcare (Basel) 2021; 10:healthcare10010010. [PMID: 35052174 PMCID: PMC8775465 DOI: 10.3390/healthcare10010010] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2021] [Revised: 12/07/2021] [Accepted: 12/12/2021] [Indexed: 12/16/2022] Open
Abstract
Medical imaging is gaining significant attention in healthcare, including breast cancer. Breast cancer is the most common cancer-related death among women worldwide. Currently, histopathology image analysis is the clinical gold standard in cancer diagnosis. However, the manual process of microscopic examination involves laborious work and can be misleading due to human error. Therefore, this study explored the research status and development trends of deep learning on breast cancer image classification using bibliometric analysis. Relevant works of literature were obtained from the Scopus database between 2014 and 2021. The VOSviewer and Bibliometrix tools were used for analysis through various visualization forms. This study is concerned with the annual publication trends, co-authorship networks among countries, authors, and scientific journals. The co-occurrence network of the authors’ keywords was analyzed for potential future directions of the field. Authors started to contribute to publications in 2016, and the research domain has maintained its growth rate since. The United States and China have strong research collaboration strengths. Only a few studies use bibliometric analysis in this research area. This study provides a recent review on this fast-growing field to highlight status and trends using scientific visualization. It is hoped that the findings will assist researchers in identifying and exploring the potential emerging areas in the related field.
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86
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Yan Y, Yao XJ, Wang SH, Zhang YD. A Survey of Computer-Aided Tumor Diagnosis Based on Convolutional Neural Network. BIOLOGY 2021; 10:biology10111084. [PMID: 34827077 PMCID: PMC8615026 DOI: 10.3390/biology10111084] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/29/2021] [Revised: 10/19/2021] [Accepted: 10/20/2021] [Indexed: 01/10/2023]
Abstract
Simple Summary One of the hottest areas in deep learning is computerized tumor diagnosis and treatment. The identification of tumor markers, the outline of tumor growth activity, and the staging of various tumor kinds are frequently included. There are several deep learning models based on convolutional neural networks that have high performance and accurate identification, with the potential to improve medical tasks. Breakthroughs and updates in computer algorithms and hardware devices, and intelligent algorithms applied in medical images have a diagnostic accuracy that doctors cannot match in some diseases. This paper reviews the progress of tumor detection from traditional computer-aided methods to convolutional neural networks and demonstrates the potential of the practical application of convolutional neural networks from practical cases to transform the detection model from experiment to clinical application. Abstract Tumors are new tissues that are harmful to human health. The malignant tumor is one of the main diseases that seriously affect human health and threaten human life. For cancer treatment, early detection of pathological features is essential to reduce cancer mortality effectively. Traditional diagnostic methods include routine laboratory tests of the patient’s secretions, and serum, immune and genetic tests. At present, the commonly used clinical imaging examinations include X-ray, CT, MRI, SPECT scan, etc. With the emergence of new problems of radiation noise reduction, medical image noise reduction technology is more and more investigated by researchers. At the same time, doctors often need to rely on clinical experience and academic background knowledge in the follow-up diagnosis of lesions. However, it is challenging to promote clinical diagnosis technology. Therefore, due to the medical needs, research on medical imaging technology and computer-aided diagnosis appears. The advantages of a convolutional neural network in tumor diagnosis are increasingly obvious. The research on computer-aided diagnosis based on medical images of tumors has become a sharper focus in the industry. Neural networks have been commonly used to research intelligent methods to assist medical image diagnosis and have made significant progress. This paper introduces the traditional methods of computer-aided diagnosis of tumors. It introduces the segmentation and classification of tumor images as well as the diagnosis methods based on CNN to help doctors determine tumors. It provides a reference for developing a CNN computer-aided system based on tumor detection research in the future.
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87
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Tripathi G, Singh K, Vishwakarma DK. Applied convolutional neural network framework for tagging healthcare systems in crowd protest environment. MATHEMATICAL BIOSCIENCES AND ENGINEERING : MBE 2021; 18:8727-8757. [PMID: 34814320 DOI: 10.3934/mbe.2021431] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
Healthcare systems constitute a significant portion of smart cities infrastructure. The aim of smart healthcare is two folds. The internal healthcare system has a sole focus on monitoring vital parameters of patients. The external systems provide proactive health care measures by the surveillance mechanism. This system utilizes the surveillance mechanism giving impetus to healthcare tagging requirements on the general public. The work exclusively deals with the mass gatherings and crowded places scenarios. Crowd gatherings and public places management is a vital challenge in any smart city environment. Protests and dissent are commonly observed crowd behavior. This behavior has the inherent capacity to transform into violent behavior. The paper explores a novel and deep learning-based method to provide an Internet of Things (IoT) environment-based decision support system for tagging healthcare systems for the people who are injured in crowd protests and violence. The proposed system is intelligent enough to classify protests into normal, medium and severe protest categories. The level of the protests is directly tagged to the nearest healthcare systems and generates the need for specialist healthcare professionals. The proposed system is an optimized solution for the people who are either participating in protests or stranded in such a protest environment. The proposed solution allows complete tagging of specialist healthcare professionals for all types of emergency response in specialized crowd gatherings. Experimental results are encouraging and have shown the proposed system has a fairly promising accuracy of more than eight one percent in classifying protest attributes and more than ninety percent accuracy for differentiating protests and violent actions. The numerical results are motivating enough for and it can be extended beyond proof of the concept into real time external surveillance and healthcare tagging.
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Affiliation(s)
- Gaurav Tripathi
- Department of ECE, Delhi Technological University, Delhi 110042, India
| | - Kuldeep Singh
- Department of Electronics & Communication Engineering, MNIT, Jaipur
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88
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Li H, Qiu L, Wang M. Informed Attentive Predictors: A Generalisable Architecture for Prior Knowledge-Based Assisted Diagnosis of Cancers. SENSORS 2021; 21:s21196484. [PMID: 34640802 PMCID: PMC8512568 DOI: 10.3390/s21196484] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/27/2021] [Revised: 09/20/2021] [Accepted: 09/24/2021] [Indexed: 11/16/2022]
Abstract
Due to the high mortality of many cancers and their related diseases, the prediction and prognosis techniques of cancers are being extensively studied to assist doctors in making diagnoses. Many machine-learning-based cancer predictors have been put forward, but many of them have failed to become widely utilised due to some crucial problems. For example, most methods require too much training data, which is not always applicable to institutes, and the complicated genetic mutual effects of cancers are generally ignored in many proposed methods. Moreover, a majority of these assist models are actually not safe to use, as they are generally built on black-box machine learners that lack references from related field knowledge. We observe that few machine-learning-based cancer predictors are capable of employing prior knowledge (PrK) to mitigate these issues. Therefore, in this paper, we propose a generalisable informed machine learning architecture named the Informed Attentive Predictor (IAP) to make PrK available to the predictor’s decision-making phases and apply it to the field of cancer prediction. Specifically, we make several implementations of the IAP and evaluate its performance on six TCGA datasets to demonstrate the effectiveness of our architecture as an assist system framework for actual clinical usage. The experimental results show a noticeable improvement in IAP models on accuracies, f1-scores and recall rates compared to their non-IAP counterparts (i.e., basic predictors).
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89
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Hsu CM, Hsu CC, Hsu ZM, Shih FY, Chang ML, Chen TH. Colorectal Polyp Image Detection and Classification through Grayscale Images and Deep Learning. SENSORS 2021; 21:s21185995. [PMID: 34577209 PMCID: PMC8470682 DOI: 10.3390/s21185995] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/13/2021] [Revised: 08/29/2021] [Accepted: 08/30/2021] [Indexed: 01/10/2023]
Abstract
Colonoscopy screening and colonoscopic polypectomy can decrease the incidence and mortality rate of colorectal cancer (CRC). The adenoma detection rate and accuracy of diagnosis of colorectal polyp which vary in different experienced endoscopists have impact on the colonoscopy protection effect of CRC. The work proposed a colorectal polyp image detection and classification system through grayscale images and deep learning. The system collected the data of CVC-Clinic and 1000 colorectal polyp images of Linkou Chang Gung Medical Hospital. The red-green-blue (RGB) images were transformed to 0 to 255 grayscale images. Polyp detection and classification were performed by convolutional neural network (CNN) model. Data for polyp detection was divided into five groups and tested by 5-fold validation. The accuracy of polyp detection was 95.1% for grayscale images which is higher than 94.1% for RGB and narrow-band images. The diagnostic accuracy, precision and recall rates were 82.8%, 82.5% and 95.2% for narrow-band images, respectively. The experimental results show that grayscale images achieve an equivalent or even higher accuracy of polyp detection than RGB images for lightweight computation. It is also found that the accuracy of polyp detection and classification is dramatically decrease when the size of polyp images small than 1600 pixels. It is recommended that clinicians could adjust the distance between the lens and polyps appropriately to enhance the system performance when conducting computer-assisted colorectal polyp analysis.
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Affiliation(s)
- Chen-Ming Hsu
- Department of Gastroenterology and Hepatology, Linkou Chang Gung Memorial Hospital and Chang Gung University College of Medicine, No. 5, Fuxing St., Guishan Dist., Taoyuan City 333, Taiwan; (C.-M.H.); (T.-H.C.)
| | - Chien-Chang Hsu
- Department of Computer Science and Information Engineering, Fu-Jen Catholic University, 510 Chung Cheng Rd., Hsinchuang Dist., New Taipei City 242, Taiwan; (Z.-M.H.); (F.-Y.S.)
- Graduate Institute of Applied Science and Engineering, Fu-Jen Catholic University, 510 Chung Cheng Rd., Hsinchuang Dist., New Taipei City 242, Taiwan;
- Correspondence:
| | - Zhe-Ming Hsu
- Department of Computer Science and Information Engineering, Fu-Jen Catholic University, 510 Chung Cheng Rd., Hsinchuang Dist., New Taipei City 242, Taiwan; (Z.-M.H.); (F.-Y.S.)
| | - Feng-Yu Shih
- Department of Computer Science and Information Engineering, Fu-Jen Catholic University, 510 Chung Cheng Rd., Hsinchuang Dist., New Taipei City 242, Taiwan; (Z.-M.H.); (F.-Y.S.)
| | - Meng-Lin Chang
- Graduate Institute of Applied Science and Engineering, Fu-Jen Catholic University, 510 Chung Cheng Rd., Hsinchuang Dist., New Taipei City 242, Taiwan;
| | - Tsung-Hsing Chen
- Department of Gastroenterology and Hepatology, Linkou Chang Gung Memorial Hospital and Chang Gung University College of Medicine, No. 5, Fuxing St., Guishan Dist., Taoyuan City 333, Taiwan; (C.-M.H.); (T.-H.C.)
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90
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Farzad A, Gulliver TA. Two Class Pruned Log Message Anomaly Detection. SN COMPUTER SCIENCE 2021; 2:391. [PMID: 34337434 PMCID: PMC8310418 DOI: 10.1007/s42979-021-00772-9] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/14/2020] [Accepted: 07/11/2021] [Indexed: 11/26/2022]
Abstract
Log messages are widely used in cloud servers and other systems. Millions of logs are generated each day which makes them important for anomaly detection. However, they are complex unstructured text messages which makes this task difficult. In this paper, a hybrid log message anomaly detection technique is proposed which employs pruning of positive and negative logs. Reliable positive log messages are first selected using a Gaussian mixture model algorithm. Then reliable negative logs are selected using the K-means, Gaussian mixture model and Dirichlet process Gaussian mixture model methods iteratively. It is shown that the precision for positive and negative logs with pruning is high. Anomaly detection is done using a deep learning long short-term memory network. The proposed model is evaluated using the well-known BGL, Openstack, and Thunderbird data sets. The results obtained indicate that the proposed model performs better than several well-known algorithms.
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Affiliation(s)
- Amir Farzad
- Department of Electrical and Computer Engineering, University of Victoria, PO Box 1700, STN CSC, Victoria, BC V8W 2Y2 Canada
| | - T. Aaron Gulliver
- Department of Electrical and Computer Engineering, University of Victoria, PO Box 1700, STN CSC, Victoria, BC V8W 2Y2 Canada
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91
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Jangir SK, Joshi N, Kumar M, Choubey DK, Singh S, Verma M. Functional link convolutional neural network for the classification of diabetes mellitus. INTERNATIONAL JOURNAL FOR NUMERICAL METHODS IN BIOMEDICAL ENGINEERING 2021; 37:e3496. [PMID: 33964103 DOI: 10.1002/cnm.3496] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/23/2020] [Revised: 04/27/2021] [Accepted: 05/03/2021] [Indexed: 06/12/2023]
Abstract
Diabetes is a faction of metabolic ailments distinguished by hyperglycemia which is the consequence of a defect, in the action of insulin, insulin secretion, or both and producing various abnormalities in the human body. In recent years, the utilization of intelligent systems has been expanded in disease classification and numerous researches have been proposed. In this research article, a variant of Convolutional Neural Network (CNN) that is, Functional Link Convolutional Neural Network (FLCNN) is proposed for the diabetes classification. The main goal of this article is to find the potential of a computationally less complex deep learning network like FLCNN and applied the proposed technique on a real dataset of diabetes for classification. This article also presents the comparative studies where various other machine learning techniques are implemented and outcomes are compared with the proposed FLCNN network. The performance of each classification techniques have been evaluated based on standard measures and also validated with a non-parametric statistical test such as Friedman. Data for modeling diabetes classification is collected from Bombay Medical Hall, Upper Bazar, Ranchi, India. Accuracy achieve by the proposed classifier is more than 90% which is closer to the other state-of-the-art implemented classifiers.
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Affiliation(s)
- Sunil Kumar Jangir
- Department of Computer Science & Engineering, Mody University of Science and Technology, Sikar, India
| | | | - Manish Kumar
- Department of Biomedical Engineering, Mody University of Science and Technology, Sikar, India
| | - Dilip Kumar Choubey
- Department of Computer Science & Engineering, Indian Institute of Information Technology Bhagalpur, Bhagalpur, India
| | - Shatakshi Singh
- Department of Computer Science & Engineering, Mody University of Science and Technology, Sikar, India
| | - Madhushi Verma
- Department of Computer Science and Engineering, Bennett University, Noida, India
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92
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Designing convolutional neural networks with constrained evolutionary piecemeal training. APPL INTELL 2021. [DOI: 10.1007/s10489-021-02679-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
Abstract
AbstractThe automated architecture search methodology for neural networks is known as Neural Architecture Search (NAS). In recent times, Convolutional Neural Networks (CNNs) designed through NAS methodologies have achieved very high performance in several fields, for instance image classification and natural language processing. Our work is in the same domain of NAS, where we traverse the search space of neural network architectures with the help of an evolutionary algorithm which has been augmented with a novel approach of piecemeal-training. In contrast to the previously published NAS techniques, wherein the training with given data is considered an isolated task to estimate the performance of neural networks, our work demonstrates that a neural network architecture and the related weights can be jointly learned by combining concepts of the traditional training process and evolutionary architecture search in a single algorithm. The consolidation has been realised by breaking down the conventional training technique into smaller slices and collating them together with an integrated evolutionary architecture search algorithm. The constraints on architecture search space are placed by limiting its various parameters within a specified range of values, consequently regulating the neural network’s size and memory requirements. We validate this concept on two vastly different datasets, namely, the CIFAR-10 dataset in the domain of image classification, and PAMAP2 dataset in the Human Activity Recognition (HAR) domain. Starting from randomly initialized and untrained CNNs, the algorithm discovers models with competent architectures, which after complete training, reach an accuracy of of 92.5% for CIFAR-10 and 94.36% PAMAP2. We further extend the algorithm to include an additional conflicting search objective: the number of parameters of the neural network. Our multi-objective algorithm produces a Pareto optimal set of neural networks, by optimizing the search for both the accuracy and the parameter count, thus emphasizing the versatility of our approach.
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93
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On Combining Feature Selection and Over-Sampling Techniques for Breast Cancer Prediction. APPLIED SCIENCES-BASEL 2021. [DOI: 10.3390/app11146574] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Breast cancer prediction datasets are usually class imbalanced, where the number of data samples in the malignant and benign patient classes are significantly different. Over-sampling techniques can be used to re-balance the datasets to construct more effective prediction models. Moreover, some related studies have considered feature selection to remove irrelevant features from the datasets for further performance improvement. However, since the order of combining feature selection and over-sampling can result in different training sets to construct the prediction model, it is unknown which order performs better. In this paper, the information gain (IG) and genetic algorithm (GA) feature selection methods and the synthetic minority over-sampling technique (SMOTE) are used for different combinations. The experimental results based on two breast cancer datasets show that the combination of feature selection and over-sampling outperform the single usage of either feature selection and over-sampling for the highly class imbalanced datasets. In particular, performing IG first and SMOTE second is the better choice. For other datasets with a small class imbalance ratio and a smaller number of features, performing SMOTE is enough to construct an effective prediction model.
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94
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Bi S, Ma L, Shen T, Xu Y, Li F. Neural network assisted Kalman filter for INS/UWB integrated seamless quadrotor localization. PeerJ Comput Sci 2021; 7:e630. [PMID: 34322594 PMCID: PMC8293925 DOI: 10.7717/peerj-cs.630] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2021] [Accepted: 06/17/2021] [Indexed: 06/13/2023]
Abstract
Due to some harsh indoor environments, the signal of the ultra wide band (UWB) may be lost, which makes the data fusion filter can not work. For overcoming this problem, the neural network (NN) assisted Kalman filter (KF) for fusing the UWB and the inertial navigation system (INS) data seamlessly is present in this work. In this approach, when the UWB data is available, both the UWB and the INS are able to provide the position information of the quadrotor, and thus, the KF is used to provide the localization information by the fusion of position difference between the INS and the UWB, meanwhile, the KF can provide the estimation of the INS position error, which is able to assist the NN to build the mapping between the state vector and the measurement vector off-line. The NN can estimate the KF's measurement when the UWB data is unavailable. For confirming the effectiveness of the proposed method, one real test has been done. The test's results demonstrate that the proposed NN assisted KF is effective to the fusion of INS and UWB data seamlessly, which shows obvious improvement of localization accuracy. Compared with the LS-SVM assisted KF, the proposed NN assisted KF is able to reduce the localization error by about 54.34%.
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Ahmedt-Aristizabal D, Armin MA, Denman S, Fookes C, Petersson L. Graph-Based Deep Learning for Medical Diagnosis and Analysis: Past, Present and Future. SENSORS (BASEL, SWITZERLAND) 2021; 21:4758. [PMID: 34300498 PMCID: PMC8309939 DOI: 10.3390/s21144758] [Citation(s) in RCA: 44] [Impact Index Per Article: 14.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/07/2021] [Revised: 07/05/2021] [Accepted: 07/07/2021] [Indexed: 01/17/2023]
Abstract
With the advances of data-driven machine learning research, a wide variety of prediction problems have been tackled. It has become critical to explore how machine learning and specifically deep learning methods can be exploited to analyse healthcare data. A major limitation of existing methods has been the focus on grid-like data; however, the structure of physiological recordings are often irregular and unordered, which makes it difficult to conceptualise them as a matrix. As such, graph neural networks have attracted significant attention by exploiting implicit information that resides in a biological system, with interacting nodes connected by edges whose weights can be determined by either temporal associations or anatomical junctions. In this survey, we thoroughly review the different types of graph architectures and their applications in healthcare. We provide an overview of these methods in a systematic manner, organized by their domain of application including functional connectivity, anatomical structure, and electrical-based analysis. We also outline the limitations of existing techniques and discuss potential directions for future research.
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Affiliation(s)
- David Ahmedt-Aristizabal
- Imaging and Computer Vision Group, CSIRO Data61, Canberra 2601, Australia; (M.A.A.); (L.P.)
- Signal Processing, Artificial Intelligence and Vision Technologies (SAIVT) Research Program, Queensland University of Technology, Brisbane 4000, Australia; (S.D.); (C.F.)
| | - Mohammad Ali Armin
- Imaging and Computer Vision Group, CSIRO Data61, Canberra 2601, Australia; (M.A.A.); (L.P.)
| | - Simon Denman
- Signal Processing, Artificial Intelligence and Vision Technologies (SAIVT) Research Program, Queensland University of Technology, Brisbane 4000, Australia; (S.D.); (C.F.)
| | - Clinton Fookes
- Signal Processing, Artificial Intelligence and Vision Technologies (SAIVT) Research Program, Queensland University of Technology, Brisbane 4000, Australia; (S.D.); (C.F.)
| | - Lars Petersson
- Imaging and Computer Vision Group, CSIRO Data61, Canberra 2601, Australia; (M.A.A.); (L.P.)
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96
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Lin CW, Hong Y, Liu J. Aggregation-and-Attention Network for brain tumor segmentation. BMC Med Imaging 2021; 21:109. [PMID: 34243703 PMCID: PMC8267236 DOI: 10.1186/s12880-021-00639-8] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2021] [Accepted: 06/30/2021] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND Glioma is a malignant brain tumor; its location is complex and is difficult to remove surgically. To diagnosis the brain tumor, doctors can precisely diagnose and localize the disease using medical images. However, the computer-assisted diagnosis for the brain tumor diagnosis is still the problem because the rough segmentation of the brain tumor makes the internal grade of the tumor incorrect. METHODS In this paper, we proposed an Aggregation-and-Attention Network for brain tumor segmentation. The proposed network takes the U-Net as the backbone, aggregates multi-scale semantic information, and focuses on crucial information to perform brain tumor segmentation. To this end, we proposed an enhanced down-sampling module and Up-Sampling Layer to compensate for the information loss. The multi-scale connection module is to construct the multi-receptive semantic fusion between encoder and decoder. Furthermore, we designed a dual-attention fusion module that can extract and enhance the spatial relationship of magnetic resonance imaging and applied the strategy of deep supervision in different parts of the proposed network. RESULTS Experimental results show that the performance of the proposed framework is the best on the BraTS2020 dataset, compared with the-state-of-art networks. The performance of the proposed framework surpasses all the comparison networks, and its average accuracies of the four indexes are 0.860, 0.885, 0.932, and 1.2325, respectively. CONCLUSIONS The framework and modules of the proposed framework are scientific and practical, which can extract and aggregate useful semantic information and enhance the ability of glioma segmentation.
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Affiliation(s)
- Chih-Wei Lin
- College of Computer and Information Science, Fujian Agriculture and Forestry University, Fuzhou, China.
- College of Forestry, Fujian Agriculture and Forestry University, Fuzhou, China.
- Forestry Post-Doctoral Station of Fujian Agriculture and Forestry University, Fuzhou, China.
- Key Laboratory for Ecology and Resource Statistics of Fujian Province, Fuzhou, China.
| | - Yu Hong
- College of Forestry, Fujian Agriculture and Forestry University, Fuzhou, China
- Key Laboratory for Ecology and Resource Statistics of Fujian Province, Fuzhou, China
| | - Jinfu Liu
- College of Computer and Information Science, Fujian Agriculture and Forestry University, Fuzhou, China
- College of Forestry, Fujian Agriculture and Forestry University, Fuzhou, China
- Key Laboratory for Ecology and Resource Statistics of Fujian Province, Fuzhou, China
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97
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A Cascade Deep Forest Model for Breast Cancer Subtype Classification Using Multi-Omics Data. MATHEMATICS 2021. [DOI: 10.3390/math9131574] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Abstract
Automated diagnosis systems aim to reduce the cost of diagnosis while maintaining the same efficiency. Many methods have been used for breast cancer subtype classification. Some use single data source, while others integrate many data sources, the case that results in reduced computational performance as opposed to accuracy. Breast cancer data, especially biological data, is known for its imbalance, with lack of extensive amounts of histopathological images as biological data. Recent studies have shown that cascade Deep Forest ensemble model achieves a competitive classification accuracy compared with other alternatives, such as the general ensemble learning methods and the conventional deep neural networks (DNNs), especially for imbalanced training sets, through learning hyper-representations through using cascade ensemble decision trees. In this work, a cascade Deep Forest is employed to classify breast cancer subtypes, IntClust and Pam50, using multi-omics datasets and different configurations. The results obtained recorded an accuracy of 83.45% for 5 subtypes and 77.55% for 10 subtypes. The significance of this work is that it is shown that using gene expression data alone with the cascade Deep Forest classifier achieves comparable accuracy to other techniques with higher computational performance, where the time recorded is about 5 s for 10 subtypes, and 7 s for 5 subtypes.
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Abstract
To improve the network performance of radial basis function (RBF) and back-propagation (BP) networks on complex nonlinear problems, an integrated neural network model with pre-RBF kernels is proposed. The proposed method is based on the framework of a single optimized BP network and an RBF network. By integrating and connecting the RBF kernel mapping layer and BP neural network, the local features of a sample set can be effectively extracted to improve separability; subsequently, the connected BP network can be used to perform learning and classification in the kernel space. Experiments on an artificial dataset and three benchmark datasets show that the proposed model combines the advantages of RBF and BP networks, as well as improves the performances of the two networks. Finally, the effectiveness of the proposed method is verified.
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Affiliation(s)
- Hui Wen
- Institute of Electromechanical and Information Engineering, Putian University, Putian, Fujian, China
| | - Tao Yan
- Institute of Electromechanical and Information Engineering, Putian University, Putian, Fujian, China
| | - Zhiqiang Liu
- Institute of Electromechanical and Information Engineering, Putian University, Putian, Fujian, China
| | - Deli Chen
- Institute of Electromechanical and Information Engineering, Putian University, Putian, Fujian, China
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99
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Zhao C, Keyak JH, Tang J, Kaneko TS, Khosla S, Amin S, Atkinson EJ, Zhao LJ, Serou MJ, Zhang C, Shen H, Deng HW, Zhou W. ST-V-Net: incorporating shape prior into convolutional neural networks for proximal femur segmentation. COMPLEX INTELL SYST 2021; 9:2747-2758. [PMID: 37304840 PMCID: PMC10256660 DOI: 10.1007/s40747-021-00427-5] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2021] [Accepted: 06/05/2021] [Indexed: 12/13/2022]
Abstract
We aim to develop a deep-learning-based method for automatic proximal femur segmentation in quantitative computed tomography (QCT) images. We proposed a spatial transformation V-Net (ST-V-Net), which contains a V-Net and a spatial transform network (STN) to extract the proximal femur from QCT images. The STN incorporates a shape prior into the segmentation network as a constraint and guidance for model training, which improves model performance and accelerates model convergence. Meanwhile, a multi-stage training strategy is adopted to fine-tune the weights of the ST-V-Net. We performed experiments using a QCT dataset which included 397 QCT subjects. During the experiments for the entire cohort and then for male and female subjects separately, 90% of the subjects were used in ten-fold stratified cross-validation for training and the rest of the subjects were used to evaluate the performance of models. In the entire cohort, the proposed model achieved a Dice similarity coefficient (DSC) of 0.9888, a sensitivity of 0.9966 and a specificity of 0.9988. Compared with V-Net, the Hausdorff distance was reduced from 9.144 to 5.917 mm, and the average surface distance was reduced from 0.012 to 0.009 mm using the proposed ST-V-Net. Quantitative evaluation demonstrated excellent performance of the proposed ST-V-Net for automatic proximal femur segmentation in QCT images. In addition, the proposed ST-V-Net sheds light on incorporating shape prior to segmentation to further improve the model performance.
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Affiliation(s)
- Chen Zhao
- Department of Applied Computing, Michigan Technological University, 1400 Townsend Dr, Houghton, MI 49931 USA
| | - Joyce H. Keyak
- Department of Radiological Sciences, Department of Mechanical and Aerospace Engineering, Department of Biomedical Engineering, and Chao Family Comprehensive Cancer Center, University of California, Irvine, Irvine, CA 92697 USA
| | - Jinshan Tang
- Department of Applied Computing, Michigan Technological University, 1400 Townsend Dr, Houghton, MI 49931 USA
- Center of Biocomputing and Digital Health, Institute of Computing and Cybersystems, and Health Research Institute, Michigan Technological University, Houghton, MI 49931 USA
| | - Tadashi S. Kaneko
- Department of Radiological Sciences, University of California, Irvine, Irvine, CA 92697 USA
| | - Sundeep Khosla
- Division of Endocrinology, Department of Medicine, Mayo Clinic, Rochester, MN USA
| | - Shreyasee Amin
- Division of Epidemiology, Department of Health Sciences Research, and Division of Rheumatology, Department of Medicine, Mayo Clinic, Rochester, MN USA
| | - Elizabeth J. Atkinson
- Division of Biomedical Statistics and Informatics, Department of Health Sciences Research, Mayo Clinic, Rochester, MN USA
| | - Lan-Juan Zhao
- Division of Biomedical Informatics and Genomics, Tulane Center of Biomedical Informatics and Genomics, Deming Department of Medicine, Tulane University, School of Medicine, 1440 Canal Street, Suite 1610, New Orleans, LA 70112 USA
| | - Michael J. Serou
- Department of Radiology, Tulane University School of Medicine, New Orleans, LA 70112 USA
| | - Chaoyang Zhang
- School of Computing Sciences and Computer Engineering, University of Southern Mississippi, Hattiesburg, MS 39406 USA
| | - Hui Shen
- Division of Biomedical Informatics and Genomics, Tulane Center of Biomedical Informatics and Genomics, Deming Department of Medicine, Tulane University, School of Medicine, 1440 Canal Street, Suite 1610, New Orleans, LA 70112 USA
| | - Hong-Wen Deng
- Division of Biomedical Informatics and Genomics, Tulane Center of Biomedical Informatics and Genomics, Deming Department of Medicine, Tulane University, School of Medicine, 1440 Canal Street, Suite 1610, New Orleans, LA 70112 USA
| | - Weihua Zhou
- Department of Applied Computing, Michigan Technological University, 1400 Townsend Dr, Houghton, MI 49931 USA
- Center of Biocomputing and Digital Health, Institute of Computing and Cybersystems, and Health Research Institute, Michigan Technological University, Houghton, MI 49931 USA
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100
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Altaf MM. A hybrid deep learning model for breast cancer diagnosis based on transfer learning and pulse-coupled neural networks. MATHEMATICAL BIOSCIENCES AND ENGINEERING : MBE 2021; 18:5029-5046. [PMID: 34517476 DOI: 10.3934/mbe.2021256] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
Radiology experts often face difficulties in mammography mass lesion labeling, which may lead to conclusive yet unnecessary and expensive breast biopsies. This paper focuses on building an automated diagnosis tool that supports radiologists in identifying and classifying mammography mass lesions. The paper's main contribution is to design a hybrid model based on Pulse-Coupled Neural Networks (PCNN) and Deep Convolutional Neural Networks (CNN). Due to the need for large datasets to train and tune CNNs, which are not available for medical images, Transfer Learning (TL) was exploited in this research. TL can be an effective approach when working with small-sized datasets. The paper's implementation was tested on three public benchmark datasets: DDMS, INbreast, and BCDR datasets for training and testing and MIAS for testing only. The results indicated the enhancement that PCNN provides when combined with CNN compared to other methods for the same public datasets. The hybrid model achieved 98.72% accuracy for DDMS, 97.5% for INbreast, and 96.94% for BCDR. To avoid overfitting, the proposed hybrid model was tested on an unseen MIAS dataset, achieving 98.77% accuracy. Other evaluation metrics are reported in the results section.
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Affiliation(s)
- Meteb M Altaf
- National Center for Robotics Technology and Internet of Things, King Abdulaziz City for Science and Technology, Riyadh, Saudi Arabia
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