Fluorescence spectra of trans- and cis-azobenzene – emission from the Franck–Condon state

Structure-Correlation NMR Spectroscopy for Macromolecules Using Repeated Bidirectional Photoisomerization of Azobenzene

Control over macromolecular structure offers bright potentials for manipulation of macromolecular functions. We here present structure-correlation NMR spectroscopy to analyze the correlation between polymorphic macromolecular structures driven by photoisomerization of azobenzene. The structural conversion of azobenzene was induced within the mixing time of a NOESY experiment using a colored light source, and the reverse structural conversion was induced during the relaxation delay using a light source of another color. The correlation spectrum between trans- and cis-azobenzene was then obtained. To maximize the efficiency of the bidirectional photoisomerization of azobenzene-containing macromolecules, we developed a novel light-irradiation NMR sample tube and method for irradiating target molecules in an NMR radio frequency (rf) coil. When this sample tube was used for photoisomerization of an azobenzene derivative at a concentration of 0.2 mM, data collection with reasonable sensitivity applicable to macromolecules was achieved. We performed isomerization of an azobenzene-cross-linked peptide within the mixing time of a NOESY experiment that produced cross-peaks between helix and random-coil forms of the peptide. Thus, these results indicate that macromolecular structure manipulation can be incorporated into an NMR pulse sequence using an azobenzene derivative and irradiation with light of two types of wavelengths, providing a new method for structural analysis of metastable states of macromolecules.

Probing the π→π* photoisomerization mechanism of cis-azobenzene by multi-state ab initio on-the-fly trajectory dynamics simulation

Based on a newly developed algorithm to compute global nonadiabatic switching probability by using only electronic adiabatic potential energy surfaces and gradients, we performed on-the-fly, trajectory-surface hopping simulations at the 5SA-CASSCF(6,6)/6-31G quantum level to probe the π→π* photoisomerization mechanism of the azobenzene within four singlet low-lying electronic states (S0, S1, S2, and S3) coupled with a complicated conical intersection network. We found that four conical intersections between the S1 and S2 states (one is near the cis-isomer region, another near the trans-isomer region, and two others between cis and trans) play the most important roles for understanding the photoisomerization mechanism of azobenzene upon S2 and S3ππ* excitation. We studied six cases to demonstrate the photoisomerization mechanism in detail by choosing eight (six) typical reactive (nonreactive) trajectories, namely, two-step fast-fast processes having lifetimes of several tenths to one hundred femtoseconds and two-step, fast-slow and slow-slow processes having lifetimes of several hundred to one thousand femtoseconds. We found for the first time from simulation that once a trajectory visits the conical intersection near the trans-isomer after ππ* excitation, it could rapidly go through the inversion pathway to trans-azobenzene, and confirms the most recent experimental observations. We performed 536 sampling trajectories (336 from S2 and 200 from S3), initially starting from the Franck-Condon region of cis-azobenzene, and obtained a total reactive quantum yield of 0.3-0.45 in very good agreement with recent experimental results of 0.24-0.50. Moreover, the current method can estimate overall nonadiabatic transition probability for each sampling trajectory from beginning to end. This can greatly accelerate convergence of nonadiabatic molecular dynamic simulation, and, for instance, results in a quantum yield of 0.53 estimated from only eight typical reactive trajectories.

Azobenzene switch with a long-lived cis-state to photocontrol the enzyme activity of a histone deacetylase-like amidohydrolase

The control of enzymes by use of an external stimulus such as light enables the temporal and spatial regulation of defined chemical reactions in a highly precise manner. In this work we investigated and characterized the reversible photocontrol of a bacterial histone deacetylase-like amidohydrolase (HDAH) from Bordetella/Alcaligenes strain FB188, which holds great potential to control deacetylation reactions of a broad spectrum of substrates in biotechnological and biomedical applications. Several HDAH variants with a single surface accessible cysteine close to the active site were developed and covalently modified by a monofunctional azobenzene-based photoswitch [4-phenylazomaleinanil (4-PAM)]. The enzymatic activity of three HDAH variants (M30C, S20C and M150C) were shown to be controlled by light. The thermal cis-to-trans relaxation of azobenzene conjugated to HDAH was up to 50-fold retarded compared to unbound 4-PAM allowing light pulse switching rather than continuing irradiation to maintain the thermodynamically less stable cis-state of covalently attached 4-PAM.

Fast photodynamics of azobenzene probed by scanning excited-state potential energy surfaces using slow spectroscopy

Azobenzene, a versatile and polymorphic molecule, has been extensively and successfully used for photoswitching applications. The debate over its photoisomerization mechanism leveraged on the computational scrutiny with ever-increasing levels of theory. However, the most resolved absorption spectrum for the transition to S₁(nπ*) has not followed the computational advances and is more than half a century old. Here, using jet-cooled molecular beam and multiphoton ionization techniques we report the first high-resolution spectra of S₁(nπ*) and S₂(ππ*). The photophysical characterization reveals directly the structural changes upon excitation and the timescales of dynamical processes. For S₁(nπ*), we find that changes in the hybridization of the nitrogen atoms are the driving force that triggers isomerization. In combination with quantum chemical calculations we conclude that photoisomerization occurs along an inversion-assisted torsional pathway with a barrier of ~2 kcal mol⁻¹. This methodology can be extended to photoresponsive molecular systems so far deemed non-accessible to high-resolution spectroscopy.

Azobenzene is perhaps the archetypal light-activated molecule, widely used for photoswitching applications, but the mechanism of isomerisation remains in doubt. Here, the authors provide high-resolution excitation spectra of trans-azobenzene, identifying the structural changes accompanying photoisomerisation.

Multistimuli-responsive azobenzene nanofibers with aggregation-induced emission enhancement characteristics

A new azobenzene-based chromophore was synthesized to create one-dimensional (1D) nanofibers with aggregation-induced emission enhancement characteristics. The enhanced red fluorescence of the fibrous structures can be switched off via mechanical pressure, friction, or heat by pressing, rubbing, or annealing.

Molecular structure and modeling studies of azobenzene derivatives containing maleimide groups

The molecular orbital calculations have been carried out to investigate the structure and stability of (E) / (Z) isomers of some azobenzene derivatives containing maleimide groups. A special attention has been devoted to the compound (E)-1, (E)-1-(4-(phenyldiazenyl)phenyl)-1H-pyrrole-2,5-dione, for which the available crystallographic experimental data have been used to validate the modeling structures computed at the theoretical levels AM1, PM3, RHF/6-31+G(d,p) and B3LYP/6-31+G(d,p). To this end, the discrepancy between experimental and calculated structural parameters has been ascertained in terms of root-mean-square deviation (RMSD). The quantum calculations at the level RHF/6-31+G(d,p) yield the most accurate results on (E)-1 structure giving a deviation error from crystallographic data of about 5.00% for bond lengths and 0.97% for interatomic angles. The theoretical electronic absorption spectra of azobenzene derivatives of concern have been computed by means of configuration-interaction method (CI) at the level of semi-empirical Hamiltonians (AM1 and PM3). Likewise, the molecular energy spectra, electrostatic potential and some quantitative structure activity relationship (QSAR) properties of studied molecules have been computed and discussed in the paper.

Light-Switchable and Monodisperse Conjugated Polymer Particles

We present a novel class of light-responsive particles for fluorescence modulation at low switching doses. The particles also exhibit phase-changing and shape-shifting behavior. The monodisperse conjugated polymer particles with incorporated light-switchable azobenzene moieties are prepared in a Suzuki-Miyaura dispersion polymerization. The influence of the molecular structure and the trans-to-cis switching behavior on the photonic performance are investigated. The polymer particles present ideal candidates for responsive organic photonics and as high resolution marker systems for biomedical applications.

Photo-responsive carbon nanomaterials functionalized by azobenzene moieties: structures, properties and application

The ability to tune the microstructures, bandgap, conductance, chemical environment and thermal storage of carbon nanomaterials such as carbon nanotubes, graphene and fullerenes by optical modulation or response is important to design and fabricate advanced optoelectronic nanodevices. This review is focused on optical control and regulation of structures, properties, interface and interaction of a new generation of photo-responsive carbon nanomaterials/azobenzene moieties (Carbon-AZO) hybrids. The optical switching properties of Carbon-AZO hybrids resulting from the photo-isomerization between trans and cis isomers are highlighted and discussed in terms of photo-energy conversion devices including switches, sensors, detectors, fuels and storage. A wide range of advanced energy conversion devices using Carbon-AZO hybrids can be developed in the future by the optimization of the chemical structure, steric conformation, electrostatic environment and functionalization of specific molecules.

Photoactive azoimine dyes: 4-(2-pyridylazo)-N,N-diethylaniline and 4-(2-pyridylazo)-N,N-dimethylaniline: computational and experimental investigation

4-(2-Pyridylazo)-N,N-dimethylaniline and 4-(2-pyridylazo)-N,N-diethylaniline, two photoactive azoimine dyes, were prepared from the reaction of 2-aminopyridine with N,N-dialkyl-1,4-nitrosoaniline at room temperature. Structural characterizations of these dyes using single crystal X-ray diffraction, (1)H NMR, elemental analysis, mass spectroscopy and IR spectroscopy have been carried out. The X-ray structure indicates a trans configuration around the azo group. The photochemical behavior of these compounds differs from that of 2-phenylazopyridine, the non-dialkylamino substituent compound. The synthesized compounds show emission spectra at room temperature while 2-phenylazopyridine does not. The excitation spectra of these compounds differ from their absorption spectra which can be explained on the basis of the trans to cis photoisomerization which is supported by the TD-PBE0/6-31G(d,p) calculations. Both oxidation of the dialkylamino substituents (-NR(2); R=-CH(3) and -C(2)H(5)) and reduction of -N=N-/-N=N-(-) and -N=N-(-)/-N=N-(2-) were observed in the cyclic voltammogram indicating a π-acidity of both dyes.

Semiempirical Hamiltonian for simulation of azobenzene photochemistry

We present a semiempirical Hamiltonian that provides an accurate description of the first singlet and triplet potential energy surfaces of azobenzene for use in direct simulations of the excited-state dynamics. The parameterization made use of spectroscopic and thermochemical data and the best ab initio results available to date. Two-dimensional potential energy surfaces based on constrained geometry optimizations are presented for the states that are most relevant for the photochemistry of azobenzene, namely, S(0), S(1), and S(2). In order to run simulations of the photodynamics of azobenzene in hydrocarbons or hydroxylic solvents, we determined the interactions of methane and methanol with the azo group by ab initio calculations and fitted the interactions with a QM/MM interaction Hamiltonian.

Photoisomerization in different classes of azobenzene

Azobenzene undergoes trans→cis isomerization when irradiated with light tuned to an appropriate wavelength. The reverse cis→trans isomerization can be driven by light or occurs thermally in the dark. Azobenzene's photochromatic properties make it an ideal component of numerous molecular devices and functional materials. Despite the abundance of application-driven research, azobenzene photochemistry and the isomerization mechanism remain topics of investigation. Additional substituents on the azobenzene ring system change the spectroscopic properties and isomerization mechanism. This critical review details the studies completed to date on the 3 main classes of azobenzene derivatives. Understanding the differences in photochemistry, which originate from substitution, is imperative in exploiting azobenzene in the desired applications.

Nonadiabatic molecular dynamics study of the cis-trans photoisomerization of azobenzene excited to the S1 state

Ab initio nonadiabatic dynamics simulations of cis-to-trans isomerization of azobenzene upon S(1) (n-π*) excitation are carried out employing the fewest-switches surface hopping method. Azobenzene photoisomerization occurs purely as a rotational motion of the central CNNC moiety. Two nonequivalent rotational pathways corresponding to clockwise or counterclockwise rotation are available. The course of the rotational motion is strongly dependent on the initial conditions. The internal conversion occurs via an S(0)/S(1) crossing seam located near the midpoint of both of these rotational pathways. Based on statistical analysis, it is shown that the occurrence of one or other pathway can be completely controlled by selecting adequate initial conditions.

Nanoengineering ion channels for optical control

Chemical modification with photoisomerizable tethered ligands endows proteins with sensitivity to light. These optically actuated proteins are revolutionizing research in biology by making it possible to manipulate biological processes noninvasively and with unprecedented spatiotemporal resolution.

Azobenzene as photoresponsive conformational switch in cyclic peptides*

Over the last decades azobenzene has been the most widely used optical trigger for the synthesis of photoresponsive systems ranging from poly-alpha-amino acids to innovative materials with light-controlled mechanical and optical properties. More recently, its use in form of appropriate derivatives allowed to generate cyclic peptide structures of constraint conformational space and thus to exploit its reversible photoisomerization to induce well defined transitions between different conformational states. These can be characterized in detail in both photostationary states making such systems ideal substrates for ultrafast spectroscopic analysis of conformational transitions. Moreover, the changes in biophysical properties that occur as a consequence of the different conformational states can be exploited for a photo-control of a large variety of molecular recognition processes.

The different photoisomerization efficiency of azobenzene in the lowest n pi* and pi pi* singlets: the role of a phantom state

Azobenzene E<==>Z photoisomerization, following excitation to the bright S(pi pi*) state, is investigated by means of ab initio CASSCF optimizations and perturbative CASPT2 corrections. Specifically, by elucidating the S(pi pi*) deactivation paths, we explain the mechanism responsible for azobenzene photoisomerization, the lower isomerization quantum yields observed for the S(pi pi*) excitation than for the S1(n pi*) excitation in the isolated molecule, and the recovery of the Kasha rule observed in sterically hindered azobenzenes. We find that a doubly excited state is a photoreaction intermediate that plays a very important role in the decay of the bright S(pi pi*). We show that this doubly excited state, which is immediately populated by molecules excited to S(pi pi*), drives the photoisomerization along the torsion path and also induces a fast internal conversion to the S1(n pi*) at a variety of geometries, thus shaping (all the most important features of) the S(pi pi*) decay pathway and photoreactivity. We reach this conclusion by determining the critical structures, the minimum energy paths originating on the bright S(pi pi*) state and on other relevant excited states including S1(n pi*), and by characterizing the conical intersection seams that are important in deciding the photochemical outcome. The model is consistent with the most recent time-resolved spectroscopic and photochemical data.

Excited-state structure and dynamics of cis- and trans-Azobenzene from resonance Raman intensity analysis

Resonance Raman intensity analysis was used to investigate the initial excited-state nuclear dynamics of cis- and trans-azobenzene following S1 (npi*) excitation, and fluorescence quantum yield measurements were used to estimate the excited-state lifetimes. trans-Azobenzene exhibits the strongest Raman intensities in its skeletal stretching and bending modes, while torsional motions dominate the nuclear relaxation of cis-azobenzene as indicated by intense Raman lines at 275, 542, 594, and 778 cm(-1). The very weak fluorescence quantum yield for cis-azobenzene is consistent with its approximately 100 fs electronic lifetime while trans-azobenzene, with a fluorescence quantum yield of 1.1 x 10(-5), has an estimated S1 lifetime of approximately 3 ps. The absorption and Raman cross-sections of both isomers were modeled to produce a harmonic displaced excited-state potential energy surface model revealing the initial nuclear motions on the reactive surface, as well as values for the homogeneous and inhomogeneous linewidths. For cis-azobenzene, this modeling predicts slopes on the S1 potential energy surface that when extrapolated to the position of the harmonic minimum give excited-state changes of approximately 6-20 degrees in the CNNC torsion angle and a < or =3 degrees change in the CNN bending angle. The relatively large excited-state displacements along these torsional degrees of freedom provide the driving force for ultrafast isomerization. In contrast, the excited-state geometry changes of trans-azobenzene are primarily focused on the CNN bend and CN and NN stretches. These results support the idea that cis-azobenzene isomerizes rapidly via rotation about the NN bond, while isomerization proceeds via inversion for trans-azobenzene.

Optical switches and triggers for the manipulation of ion channels and pores

Like fluorescence sensing techniques, methods to manipulate proteins with light have produced great advances in recent years. Ion channels have been one of the principal protein targets of photoswitched manipulation. In combination with fluorescence detection of cell signaling, this has enabled non-invasive, all-optical experiments on cell and tissue function, both in vitro and in vivo. Optical manipulation of channels has also provided insights into the mechanism of channel function. Optical control elements can be classified according to their molecular reversibility as non-reversible phototriggers where light breaks a chemical bond (e.g. caged ligands) and as photoswitches that reversibly photoisomerize. Synthetic photoswitches constitute nanoscale actuators that can alter channel function using three different strategies. These include (1) nanotoggles, which are tethered photoswitchable ligands that either activate channels (agonists) or inhibit them (blockers or antagonists), (2) nanokeys, which are untethered (freely diffusing) photoswitchable ligands, and (3) nanotweezers, which are photoswitchable crosslinkers. The properties of such photoswitches are discussed here, with a focus on tethered photoswitchable ligands. The recent literature on optical manipulation of ion channels is reviewed for the different channel families, with special emphasis on the understanding of ligand binding and gating processes, applications in nanobiotechnology, and with attention to future prospects in the field.