Stability and Three-Dimensional Aromaticity of closo-Monocarbaborane Anions, CB(n)()(-)(1)H(n)(-), and closo-Dicarboranes, C(2)B(n)()(-)(2)H(n)()

The properties of substituted 3D-aromatic neutral carboranes: the potential for σ-hole bonding

The calculated properties of substituted carboranes such as dipole moment, polarisability, the magnitude of the σ-hole and the desolvation free energy are compared with these properties in comparable aromatic and cyclic aliphatic organic compounds. Dispersion and charge transfer energies are similar. However, the predicted strength of the halogen bonds with the same electron donor (based on the magnitude of the σ-hole) is larger for neutral C-vertex halogen-substituted carboranes than for their organic counterparts. Furthermore, the desolvation penalties of substituted carboranes are smaller than those of the corresponding organic compounds, which should further strengthen the halogen bonds of the former in the solvent. It is predicted that substituted carboranes have the potential to form stronger halogen bonds than comparable aromatic hydrocarbons, which will be even more pronounced in the medium. This theoretical study thus lays ground for the rational engineering of halogen bonding in inorganic crystals as well as in biomolecular complexes.

Carborane-based carbonic anhydrase inhibitors: insight into CAII/CAIX specificity from a high-resolution crystal structure, modeling, and quantum chemical calculations

Carborane-based compounds are promising lead structures for development of inhibitors of carbonic anhydrases (CAs). Here, we report structural and computational analysis applicable to structure-based design of carborane compounds with selectivity toward the cancer-specific CAIX isoenzyme. We determined the crystal structure of CAII in complex with 1-methylenesulfamide-1,2-dicarba-closo-dodecaborane at 1.0 Å resolution and used this structure to model the 1-methylenesulfamide-1,2-dicarba-closo-dodecaborane interactions with CAIX. A virtual glycine scan revealed the contributions of individual residues to the energy of binding of 1-methylenesulfamide-1,2-dicarba-closo-dodecaborane to CAII and CAIX, respectively.

π aromaticity and three-dimensional aromaticity: two sides of the same coin?

A bridge between classical organic polycyclic aromatic hydrocarbons (PAH) and closo borohydride clusters is established by showing that they share a common origin regulated by the number of valence electrons in an electronic confined space. Application of the proposed electronic confined space analogy (ECSA) method to archetypal PAHs leads to the conclusion that the 4n+2 Wade-Mingos rule for three-dimensional closo boranes is equivalent to the (4n+2)π Hückel rule for two-dimensional PAHs. More importantly, use of ECSA allows design of new interesting fused closo boranes which can be a source of inspiration for synthetic chemists.

Carba-closo-dodecaborate anions with two functional groups: [1-R-12-HC≡C-closo-1-CB₁₁H₁₀]⁻ (R = CN, NC, CO₂H, C(O)NH₂, NHC(O)H)

Disubstituted carba-closo-dodecaborate anions with one functional group bonded to the cluster carbon atom and one ethynyl group bonded to the antipodal boron atom were synthesized from easily accessible {closo-1-CB11} clusters. [Et4N][1-NC-12-HC≡C-closo-1-CB11H10] ([Et4N]4b) was prepared starting from Cs[12-Et3SiC≡C-closo-1-CB11H11] (Cs1c) via salts of the anions [1-HO(O)C-12-HC≡C-closo-1-CB11H10](-) (2b) and [1-H2N(O)C-12-HC≡C-closo-1-CB11H10](-) (3b). In a similar reaction sequence [Et4N][1-CN-12-HC≡C-closo-1-CB11H10] ([Et4N]7b) was obtained from Cs[1-H2N-12-HC≡C-closo-1-CB11H10] (Cs5b) by formamidation to yield [Et4N][1-H(O)CHN-12-HC≡C-closo-1-CB11H10] ([Et4N]6b) and successive dehydration. In addition, the synthesis of the isonitrile [Et4N][1-CN-closo-1-CB11H11] ([Et4N]7a) is presented. The {closo-1-CB11} derivatives were characterized by multinuclear NMR as well as vibrational spectroscopy, mass spectrometry, and elemental analysis. The crystal structures of [Et4N][1-HO(O)C-12-HC≡C-closo-1-CB11H10] ([Et4N]2b), [Et4N][1-H2N(O)C-12-HC≡C-closo-1-CB11H10] ([Et4N]3b), [Et4N][1-NC-12-HC≡C-closo-1-CB11H10] ([Et4N]4b), [Et4N][1-H(O)CHN-12-HC≡C-closo-1-CB11H10] ([Et4N]6b), [Et4N][1-CN-12-HC≡C-closo-1-CB11H10] ([Et4N]7b), and K[1-H(O)CHN-closo-1-CB11H11] ([Et4N]6a) were determined. The transmission of electronic effects through the carba-closo-dodecaboron cage was studied based on (13)C NMR spectroscopic data, by results derived from density functional theory calculations, and by a comparison to the data of related benzene and bicyclo[2.2.2]octane derivatives.

STRUCTURE AND STABILITY OF $CLOSO-B_{n}H_{n-1}N_{2}^{-} (n=5-12)$

[Formula: see text], framework-isoelectronic to [Formula: see text], have been investigated at the B3LYP/6-311+G** level of theory. The most stable positional isomers of individual [Formula: see text] are similar to those of [Formula: see text] and [Formula: see text] in framework configuration. The energy analysis reveals that the cage [Formula: see text] with the icosahedron framework, [Formula: see text] with the octahedron framework and [Formula: see text] with the bicapped square antiprism framework are, in order, the most stable in the [Formula: see text] system. Furthermore, three-dimensional aromaticity of all [Formula: see text] is characterized. The most stable cages, [Formula: see text], [Formula: see text] and [Formula: see text], also have relatively large aromaticity. All the predicted N–N stretching frequencies (2127–2303 cm−1) of the most stable positional isomers in the [Formula: see text] system are lower than the computational N–N stretching frequency (2445 cm−1) of free N2 at the same level, which results from the σ donation of N2 to B frameworks. The stretching frequencies of N–N in the [Formula: see text] cages increase with the decrease of N–N distances or the increase of B–N distance. In addition, B n−1 H n−1 fragment has larger affinity for group CH than that for group BNN, namely, it favors to form the [Formula: see text] rather than the [Formula: see text].

Boron as a platform for new drug design

INTRODUCTION

Boron lies on the borderline between metals and non-metals in the periodic table. As such, it possesses peculiarities which render it suitable for a variety of applications in chemistry, technology and medicine. However, boron's peculiarities have been exploited only partially so far.

AREAS COVERED

In this review, the authors highlight selected areas of research which have witnessed new uses of boron compounds in recent times. The examples reported illustrate how difficulties in the synthesis and physicochemical characterization of boronated molecules, encountered in past years, can be overcome with positive effects in different fields.

EXPERT OPINION

Many potentialities of boron-based systems reside in the peculiar properties of both boron atoms (the ability to replace carbon atoms, electron deficiency) and of boronated compounds (hydrophobicity, lipophilicity, versatile stereochemistry). Taken in conjunction, these properties can provide innovative drugs. The authors highlight the need to further investigate the assembly of boronated compounds, in terms of drug design, since the mechanisms required to obtain supramolecular structures may be unconventional compared with the more standard molecules used. Furthermore, the authors propose that computational methods are a valuable tool for assessing the role of multicenter, quasi-aromatic bonds and its peculiar geometries.

Ortho-carbaborane derivatives of indomethacin as cyclooxygenase (COX)-2 selective inhibitors

A series of novel indomethacin analogues with carbaboranes as three-dimensional substitutes for the chlorophenyl ring have been prepared. Their cyclooxygenase (COX) inhibition and enzyme selectivity has been tested and compared to the corresponding adamantyl analogues. Surprisingly, only the ortho-carbaborane derivatives were active compounds. Preliminary biological studies gave an interesting insight into the validity of employing carbaboranes as pharmacophores.

STRUCTURE AND STABILITY OF HYDROGEN POOR CLOSO-${\rm B}_{n}{\rm H}_{n-x}^{-/0/+}$ (n = 5 - 12)

Structures and stabilities of hydrogen poor closo-[Formula: see text], closo- B n H n-2, and closo-[Formula: see text] (n = 5 - 12) have been investigated at the B3LYP/6-311+G** density functional level of theory. It is found that [Formula: see text], B 5 H 3, [Formula: see text], and [Formula: see text] have open instead of the expected closo structures, and the other isomers have the same structural pattern as closo-[Formula: see text]. Energetic analysis identifies closo-[Formula: see text] (n = 7, 9), closo- B n H n-2 (n = 7, 11), and closo-[Formula: see text] (n = 6, 8, 10) as the most stable clusters. The CO affinities of the most stable closo- B n H n-1 CO -, closo- B n H n-2( CO )2, and closo-[Formula: see text] (n = 5 - 12) have been computed.

Revisiting B20H16 by means of a joint computational/experimental NMR approach

A new synthesis of the fused macropolyhedral boron cluster B20H16 is described and its molecular structure in solution discussed, based on multi-nuclear NMR spectra, including COSY measurements, in relation to its previously elucidated solid-state structure. To verify the conclusions from the NMR study, experimentally determined chemical shifts are compared with calculated values at the GIAO-B3LYP level with a TZP basis set by Huzinaga. There is a very good agreement between the experimental and computed δ(11B) values, suggesting that the MP2/6-31G* internal coordinates are a reasonable representation of the molecular geometry of this twenty-vertex cluster in solution that is essentially the same as its solid-state structure. A computational analysis of the FMO orbitals of B20H16, in particular of the LUMO, reveals that the four naked boron atoms, common for two shared icosahedral subclusters, are the reactive sites of this D2d-symmetrical molecule.

Anionic amino acid [closo-1-CB9H8-1-COO-10-NH3]- and dinitrogen acid [closo-1-CB9H8-1-COOH-10-N2] as key precursors to advanced materials: synthesis and reactivity

Amino acid [closo-1-CB(9)H(8)-1-COO-10-NH(3)](-) (4) was prepared by amination of iodo acid [closo-1-CB(9)H(8)-1-COOH-10-I](-) (1) with LiHMDS in a practical and reproducible manner. The apparent dissociation constants, pK(2) = 5.6 and pK(1) > 11, were measured for 4[NMe(4)] in 50% aq. EtOH. Diazotization of 4 with NO(+)PF(6)(-) under mildly basic conditions afforded stable dinitrogen acid [closo-1-CB(9)H(8)-1-COOH-10-N(2)] (5). Activation parameters (DeltaH(++) = 33.9 +/- 1.4 kcal mol(-1) and DeltaS(++) = 10 +/- 3.5 cal mol(-1) K(-1)) for thermolysis of its methyl ester [closo-1-CB(9)H(8)-1-COOMe-10-N(2)] (11) in PhCN were established, and the heterolysis of the B-N bond is believed to be the rate-determining step. Electrochemical analysis showed a partially reversible reduction process for 11 (E(1/2)(red) = -1.03 V) and 5(-) (E(1/2)(red) = -1.21 V), which are more cathodic than reduction of [closo-1-CB(9)H(9)-1-N(2)] (17). The dinitrogen acid 5 was reacted with pyridine and N,N-dimethylthioformamide, to form pyridine acid 6 and protected mercapto acid 7, respectively, through a boronium ylide intermediate 18. Compound 7 was converted to sulfonium acid 8. The molecular and crystal structures for 5 [C(2)H(9)B(9)N(2)O(2) monoclinic, P2(1)/n, a = 7.022(2) A, b = 11.389(4) A, c = 12.815(4) A, beta = 96.212(5) degrees ; V = 1018.8(6) A(3), Z = 4,], 6 [C(7)H(14)B(9)NO(2), monoclinic, P2(1)/n, a = 14.275(4) A, b = 12.184(3) A, c = 30.538(8) A, beta = 95.377(4) degrees ; V = 5288(3) A(3), Z = 16], and 8 [C(7)H(19)B(9)O(2)S, monoclinic, P2(1)/c, a = 15.988(5) A, b = 19.377(6) A, c = 9.655(3) A, beta = 98.348(5) degrees; V = 2959.4(16) A(3), Z = 8] were determined by X-ray crystallography and compared with results of density functional theory (DFT) and MP2 calculations. Electronic structures of 5, 6, and related species were elucidated with electronic spectroscopy and assessed computationally at the B3LYP/6-31G(d,p), MP2/6-31G(d,p), and ZINDO//MP2 levels of theory.

exo-Substituent effects in halogenated icosahedral (B12H122–) and octahedral (B6H62–) closo-borane skeletons: chemical reactivity studied by experimental and quantum chemical methods

The exo-substituent effects in halogenated icosahedral B12H122– (B12) and octahedral B6H62– (B6) closo-borane skeletons were studied both experimentally and theoretically. Firstly, the equilibrium geometries of exo-substituted B12 and B6 clusters were obtained using quantum chemical calculations at the MP2/def2-SVP level. A comparison with the available X-ray crystallographic data revealed a very good agreement between the theoretical and experimental values. Secondly, other descriptors of the molecular structure of these borane compounds – 11B NMR chemical shifts – were experimentally determined and compared with the calculated values obtained by the ab initio/GIAO approach at the MP2/def2-TZVP level. It was shown that the calculated data reproduced the experiment very closely. Thirdly, we investigated experimentally the halogenation reactions of B12 and attempted to explain the observed ratios between the two obtained disubstituted products (meta/ortho ~ 4:1) by calculating their thermodynamic stabilities using the DFT/B3LYP method. These calculations showed the enhanced stability of the meta disubstituted B12 but did not explain why the para product had not been observed in the experiment. We thus turned our attention to the kinetic aspects of exo-substitution reactions by exploring the possible reaction pathways and transition states. In spite of the complexity of the plausible reaction mechanisms, reasonable agreement was obtained between the calculated activation barriers and the experimental observations concerning the halogenation reactions of the B6 and B12 molecules. It also allowed to exclude from considerations certain reaction pathways leading to the mono- and dihalogenated B12 and B6 species.