51
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Ghose A, Amaro M, Kovaricek P, Hof M, Sykora J. 6,7-dimethoxy-coumarin as a probe of hydration dynamics in biologically relevant systems. Methods Appl Fluoresc 2018; 6:025005. [DOI: 10.1088/2050-6120/aaaa05] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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52
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How to study picosecond solvation dynamics using fluorescent probes with small Stokes shifts. Chem Phys Lett 2018. [DOI: 10.1016/j.cplett.2017.12.031] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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53
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Choi S, Jeong Y, Yu J. Temperature and Viscosity Dependence of Gold Nanodot Luminescence. Eur J Inorg Chem 2017. [DOI: 10.1002/ejic.201700722] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Affiliation(s)
- Sungmoon Choi
- Department of Chemistry and Education; Seoul National University; 1 Gwanak-Ro, Gwanak-Gu 08826 Seoul South Korea
| | - Yujin Jeong
- Department of Chemistry and Education; Seoul National University; 1 Gwanak-Ro, Gwanak-Gu 08826 Seoul South Korea
| | - Junhua Yu
- Department of Chemistry and Education; Seoul National University; 1 Gwanak-Ro, Gwanak-Gu 08826 Seoul South Korea
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54
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Kundu A, Verma PK, Cho M. Role of Solvent Water in the Temperature-Induced Self-Assembly of a Triblock Copolymer. J Phys Chem Lett 2017; 8:3040-3047. [PMID: 28613892 DOI: 10.1021/acs.jpclett.7b01008] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
Water-soluble triblock copolymers have received much attention in industrial applications and scientific fields. We here show that femtosecond mid-IR pump-probe spectroscopy is useful to study the role of water in the temperature-induced self-assembly of triblock copolymers. Our experimental results suggest two distinct subpopulations of water molecules: those that interact with other water molecules and those involved in the hydration of a triblock copolymer surface. We find that the vibrational dynamics of bulk-like water is not affected by either micellation or gelation of triblock copolymers. The increased population of water interacting with ether oxygen atoms of the copolymer during the unimer to micelle phase transition is important evidence for the entropic role of water in temperature-induced micelle formation at a low copolymer concentration. In contrast, at the critical gelation temperature and beyond, the population of surface-associated water molecules interacting with ether oxygen atoms decreases, which indicates important enthalpic control by water. The present study on the roles of water in the two different phase transitions of triblock copolymers sheds new light on the underlying mechanisms of temperature-induced self-aggregation behaviors of amphiphiles that are ubiquitous in nature.
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Affiliation(s)
- Achintya Kundu
- Center for Molecular Spectroscopy and Dynamics, Institute for Basic Science (IBS) , Seoul 02841, Republic of Korea
- Department of Chemistry, Korea University , Seoul 02841, Republic of Korea
| | - Pramod Kumar Verma
- Center for Molecular Spectroscopy and Dynamics, Institute for Basic Science (IBS) , Seoul 02841, Republic of Korea
- Department of Chemistry, Korea University , Seoul 02841, Republic of Korea
| | - Minhaeng Cho
- Center for Molecular Spectroscopy and Dynamics, Institute for Basic Science (IBS) , Seoul 02841, Republic of Korea
- Department of Chemistry, Korea University , Seoul 02841, Republic of Korea
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55
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Yuan R, Yan C, Nishida J, Fayer MD. Dynamics in a Water Interfacial Boundary Layer Investigated with IR Polarization-Selective Pump–Probe Experiments. J Phys Chem B 2017; 121:4530-4537. [DOI: 10.1021/acs.jpcb.7b01028] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
Affiliation(s)
- Rongfeng Yuan
- Department of Chemistry, Stanford University, Stanford, California 94305, United States
| | - Chang Yan
- Department of Chemistry, Stanford University, Stanford, California 94305, United States
| | - Jun Nishida
- Department of Chemistry, Stanford University, Stanford, California 94305, United States
| | - Michael D. Fayer
- Department of Chemistry, Stanford University, Stanford, California 94305, United States
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56
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van der Loop TH, Ottosson N, Vad T, Sager WFC, Bakker HJ, Woutersen S. Communication: Slow proton-charge diffusion in nanoconfined water. J Chem Phys 2017; 146:131101. [DOI: 10.1063/1.4979714] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Tibert H. van der Loop
- Van ’t Hoff Institute for Molecular Sciences (HIMS), University of Amsterdam, Science Park 904, 1098 XH Amsterdam, The Netherlands
| | - Niklas Ottosson
- FOM Institute for Atomic and Molecular Physics, Science Park 104, 1098 XG Amsterdam, The Netherlands
| | - Thomas Vad
- Institut für Textiltechnik, RWTH Aachen University, Otto-Blumenthal-Strasse 1, 52074 Aachen, Germany
| | - Wiebke F. C. Sager
- Peter Grünberg Institute, Forschungszentrum Jülich GmbH, 52425 Jülich, Germany
| | - Huib J. Bakker
- FOM Institute for Atomic and Molecular Physics, Science Park 104, 1098 XG Amsterdam, The Netherlands
| | - Sander Woutersen
- Van ’t Hoff Institute for Molecular Sciences (HIMS), University of Amsterdam, Science Park 904, 1098 XH Amsterdam, The Netherlands
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57
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58
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Zhang Q, Chen H, Wu T, Jin T, Pan Z, Zheng J, Gao Y, Zhuang W. The opposite effects of sodium and potassium cations on water dynamics. Chem Sci 2017; 8:1429-1435. [PMID: 28451283 PMCID: PMC5390786 DOI: 10.1039/c6sc03320b] [Citation(s) in RCA: 30] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2016] [Accepted: 10/13/2016] [Indexed: 01/05/2023] Open
Abstract
Water rotational dynamics in NaSCN and KSCN solutions at a series of concentrations are investigated using femtosecond infrared spectroscopy and theory. Femtosecond infrared measurements, consistent with previous NMR observations, detect that sodium slows down while potassium accelerates the water O-H bond rotation. Results of reported neutron scattering measurements, on the other hand, suggested that these two cations have similar structure-breaking effects on water, and therefore should both accelerate water rotation through the presumably dominating large-amplitude angular jump component. To explain this discrepancy, theoretical studies with both classical and ab initio models were carried out, which indicate that both ions indeed accelerate the large-amplitude angular jump rotation of the water molecules, while the observed cation specific effect originates from the non-negligible opposite impact of the sodium and potassium cations on the diffusive rotation of water molecules.
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Affiliation(s)
- Qiang Zhang
- State Key Laboratory of Structural Chemistry , Fujian Institute of Research on the Structure of Matter , Chinese Academy of Sciences , Fuzhou , Fujian 350002 , China .
- Department of Chemistry , Bohai University , Jinzhou 121013 , China
| | - Hailong Chen
- Department of Chemistry , Rice University , Houston , TX 77005 , USA .
| | - Tianmin Wu
- Department of Chemical Physics , University of Science and Technology of China , Hefei , Anhui 230026 , P. R. China
- Fujian Provincial Key Laboratory of Theoretical and Computational Chemistry , Xiamen University , Xiamen , Fujian 361005 , China
| | - Tan Jin
- State Key Laboratory of Structural Chemistry , Fujian Institute of Research on the Structure of Matter , Chinese Academy of Sciences , Fuzhou , Fujian 350002 , China .
| | - Zhijun Pan
- Department of Chemical Physics , University of Science and Technology of China , Hefei , Anhui 230026 , P. R. China
| | - Junrong Zheng
- Department of Chemistry , Rice University , Houston , TX 77005 , USA .
- College of Chemistry and Molecular Engineering , Beijing National Laboratory for Molecular Sciences , Peking University , Beijing 100871 , China .
| | - Yiqin Gao
- College of Chemistry and Molecular Engineering , Beijing National Laboratory for Molecular Sciences , Peking University , Beijing 100871 , China .
| | - Wei Zhuang
- State Key Laboratory of Structural Chemistry , Fujian Institute of Research on the Structure of Matter , Chinese Academy of Sciences , Fuzhou , Fujian 350002 , China .
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59
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Kundu K, Bardhan S, Ghosh S, Saha SK, Paul BK. Formation of Oil/Water Interface by Mixed Surface Active Ionic Liquid-Ethoxylated Alkyl Ether: Energetics, Microstructures, Solvation Dynamics, and Antimicrobial Activity. ChemistrySelect 2016. [DOI: 10.1002/slct.201601449] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Kaushik Kundu
- Surface and Colloid Science Laboratory, Geological Studies Unit; Indian Statistical Institute; 203, B.T. Road Kolkata- 700 108 India
- Department Inorganic and Physical Chemistry; Indian Institute of Science; Bangalore- 560012 India
| | - Soumik Bardhan
- Department of Chemistry; University of North Bengal; Darjeeling- 734 013 India
- Department of Biotechnology, Bhupat and Jyoti Mehta School of Biosciences; Indian Institute of Technology Madras; Chennai- 600036 India
| | - Soumen Ghosh
- Center for Surface Science, Department of Chemistry; Jadavpur University; Kolkata- 700032 India
| | - Swapan K. Saha
- Department of Chemistry; University of North Bengal; Darjeeling- 734 013 India
| | - Bidyut K. Paul
- Surface and Colloid Science Laboratory, Geological Studies Unit; Indian Statistical Institute; 203, B.T. Road Kolkata- 700 108 India
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60
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Kraack JP, Hamm P. Surface-Sensitive and Surface-Specific Ultrafast Two-Dimensional Vibrational Spectroscopy. Chem Rev 2016; 117:10623-10664. [DOI: 10.1021/acs.chemrev.6b00437] [Citation(s) in RCA: 95] [Impact Index Per Article: 11.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Affiliation(s)
- Jan Philip Kraack
- Department of Chemistry, University of Zurich, Winterthurerstrasse 190, CH-8057, Zurich, Switzerland
| | - Peter Hamm
- Department of Chemistry, University of Zurich, Winterthurerstrasse 190, CH-8057, Zurich, Switzerland
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61
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Rao A, Cölfen H. Mineralization and non-ideality: on nature's foundry. Biophys Rev 2016; 8:309-329. [PMID: 28510024 DOI: 10.1007/s12551-016-0228-4] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2016] [Accepted: 09/30/2016] [Indexed: 10/20/2022] Open
Abstract
Understanding how ions, ion-clusters and particles behave in non-ideal environments is a fundamental question concerning planetary to atomic scales. For biomineralization phenomena wherein diverse inorganic and organic ingredients are present in biological media, attributing biomaterial composition and structure to the chemistry of singular additives may not provide a holistic view of the underlying mechanisms. Therefore, in this review, we specifically address the consequences of physico-chemical non-ideality on mineral formation. Influences of different forms of non-ideality such as macromolecular crowding, confinement and liquid-like organic phases on mineral nucleation and crystallization in biological environments are presented. Novel prospects for the additive-controlled nucleation and crystallization are accessible from this biophysical view. In this manner, we show that non-ideal conditions significantly affect the form, structure and composition of biogenic and biomimetic minerals.
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Affiliation(s)
- Ashit Rao
- Freiburg Institute for Advanced Studies, Albert Ludwigs University of Freiburg, 79104, Freiburg im Breisgau, Germany.
| | - Helmut Cölfen
- Physical Chemistry, Department of Chemistry, University of Konstanz, D-78457, Konstanz, Germany.
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62
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McDaniel JG, Mantha S, Yethiraj A. Dynamics of Water in Gemini Surfactant-Based Lyotropic Liquid Crystals. J Phys Chem B 2016; 120:10860-10868. [PMID: 27671427 DOI: 10.1021/acs.jpcb.6b08087] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The dynamics of water confined to nanometer-sized domains is important in a variety of applications ranging from proton exchange membranes to crowding effects in biophysics. In this work, we study the dynamics of water in gemini surfactant-based lyotropic liquid crystals (LLCs) using molecular dynamics simulations. These systems have well characterized morphologies, for example, hexagonal, gyroid, and lamellar, and the surfaces of the confining regions can be controlled by modifying the headgroup of the surfactants. This allows one to study the effect of topology, functionalization, and interfacial curvature on the dynamics of confined water. Through analysis of the translational diffusion and rotational relaxation, we conclude that the hydration level and resulting confinement length scale is the predominate determiner of the rates of water dynamics, and other effects, namely, surface functionality and curvature, are largely secondary. This novel analysis of the water dynamics in these LLC systems provides an important comparison for previous studies of water dynamics in lipid bilayers and reverse micelles.
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Affiliation(s)
- Jesse G McDaniel
- Department of Chemistry, University of Wisconsin , Madison, Wisconsin 53706, United States
| | - Sriteja Mantha
- Department of Chemistry, University of Wisconsin , Madison, Wisconsin 53706, United States
| | - Arun Yethiraj
- Department of Chemistry, University of Wisconsin , Madison, Wisconsin 53706, United States
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63
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Abel S, Galamba N, Karakas E, Marchi M, Thompson WH, Laage D. On the Structural and Dynamical Properties of DOPC Reverse Micelles. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2016; 32:10610-10620. [PMID: 27649391 DOI: 10.1021/acs.langmuir.6b02566] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/08/2023]
Abstract
The structure and dynamics of phospholipid reverse micelles are studied by molecular dynamics. We report all-atom unconstrained simulations of 1,2-dioleoyl-sn-phosphatidylcholine (DOPC) reverse micelles in benzene of increasing sizes, with water-to-surfactant number ratios ranging from W0 = 1 to 16. The aggregation number, i.e., the number of DOPC molecules per reverse micelle, is determined to fit experimental light-scattering measurements of the reverse micelle diameter. The simulated reverse micelles are found to be approximately spherical. Larger reverse micelles (W0 > 4) exhibit a layered structure with a water core and the hydration structure of DOPC phosphate head groups is similar to that found in phospholipid membranes. In contrast, the structure of smaller reverse micelles (W0 ≤ 4) cannot be described as a series of concentric layers successively containing water, surfactant head groups, and surfactant tails, and the head groups are only partly hydrated and frequently present in the core. The dynamics of water molecules within the phospholipid reverse micelles slow down as the reverse micelle size decreases, in agreement with prior studies on AOT and Igepal reverse micelles. However, the average water reorientation dynamics in DOPC reverse micelles is found to be much slower than in AOT and Igepal reverse micelles with the same W0 ratio. This is explained by the smaller water pool and by the stronger interactions between water and the charged head groups, as confirmed by the red-shift of the computed infrared line shape with decreasing W0.
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Affiliation(s)
- Stéphane Abel
- Commissariat à l'Energie Atomique et aux Energies Alternatives, DRF/iBiTEC-S/SB2SM & CNRS UMR 9198, 91191 Saclay, France
- Institute for Integrative Biology of the Cell (I2BC), CEA, CNRS, Univ Paris-Sud, Université Paris-Saclay, F-91198 Cedex Gif-sur-Yvette, France
| | - Nuno Galamba
- Ecole Normale Supérieure, PSL Research University, UPMC Univ Paris 06, CNRS, Département de Chimie, PASTEUR, 24 rue Lhomond, 75005 Paris, France
- Sorbonne Universités, UPMC Univ Paris 06, ENS, CNRS, PASTEUR, 75005 Paris, France
| | - Esra Karakas
- Commissariat à l'Energie Atomique et aux Energies Alternatives, DRF/iBiTEC-S/SB2SM & CNRS UMR 9198, 91191 Saclay, France
- Institute for Integrative Biology of the Cell (I2BC), CEA, CNRS, Univ Paris-Sud, Université Paris-Saclay, F-91198 Cedex Gif-sur-Yvette, France
- Maison de la Simulation, USR 3441, CEA-CNRS-INRIA-Univ Paris Sud - Univ Versailles, 91191 Cedex Gif-sur-Yvette, France
| | - Massimo Marchi
- Commissariat à l'Energie Atomique et aux Energies Alternatives, DRF/iBiTEC-S/SB2SM & CNRS UMR 9198, 91191 Saclay, France
- Institute for Integrative Biology of the Cell (I2BC), CEA, CNRS, Univ Paris-Sud, Université Paris-Saclay, F-91198 Cedex Gif-sur-Yvette, France
| | - Ward H Thompson
- Department of Chemistry, University of Kansas , Lawrence, Kansas 66045, United States
| | - Damien Laage
- Ecole Normale Supérieure, PSL Research University, UPMC Univ Paris 06, CNRS, Département de Chimie, PASTEUR, 24 rue Lhomond, 75005 Paris, France
- Sorbonne Universités, UPMC Univ Paris 06, ENS, CNRS, PASTEUR, 75005 Paris, France
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64
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Singh PC, Inoue KI, Nihonyanagi S, Yamaguchi S, Tahara T. Femtosecond Hydrogen Bond Dynamics of Bulk-like and Bound Water at Positively and Negatively Charged Lipid Interfaces Revealed by 2D HD-VSFG Spectroscopy. Angew Chem Int Ed Engl 2016. [DOI: 10.1002/ange.201603676] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Affiliation(s)
- Prashant Chandra Singh
- Molecular Spectroscopy Laboratory, RIKEN; 2-1 Hirosawa Wako Saitama 351-0198 Japan
- Department of Spectroscopy; Indian Association for the Cultivation of Science; Jadavpur Kolkata 700032 India
| | - Ken-ichi Inoue
- Molecular Spectroscopy Laboratory, RIKEN; 2-1 Hirosawa Wako Saitama 351-0198 Japan
| | - Satoshi Nihonyanagi
- Molecular Spectroscopy Laboratory, RIKEN; 2-1 Hirosawa Wako Saitama 351-0198 Japan
- Ultrafast Spectroscopy Research Team; RIKEN Center for Advanced Photonics (RAP), RIKEN; 2-1 Hirosawa Wako Saitama 351-0198 Japan
| | - Shoichi Yamaguchi
- Molecular Spectroscopy Laboratory, RIKEN; 2-1 Hirosawa Wako Saitama 351-0198 Japan
- Department of Applied Chemistry, Graduate School of Science and Engineering; Saitama University; 255 Shimo-Okubo Sakura Saitama 338-8570 Japan
| | - Tahei Tahara
- Molecular Spectroscopy Laboratory, RIKEN; 2-1 Hirosawa Wako Saitama 351-0198 Japan
- Ultrafast Spectroscopy Research Team; RIKEN Center for Advanced Photonics (RAP), RIKEN; 2-1 Hirosawa Wako Saitama 351-0198 Japan
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65
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Singh PC, Inoue KI, Nihonyanagi S, Yamaguchi S, Tahara T. Femtosecond Hydrogen Bond Dynamics of Bulk-like and Bound Water at Positively and Negatively Charged Lipid Interfaces Revealed by 2D HD-VSFG Spectroscopy. Angew Chem Int Ed Engl 2016; 55:10621-5. [PMID: 27482947 PMCID: PMC5113784 DOI: 10.1002/anie.201603676] [Citation(s) in RCA: 56] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2016] [Revised: 06/19/2016] [Indexed: 11/09/2022]
Abstract
Interfacial water in the vicinity of lipids plays an important role in many biological processes, such as drug delivery, ion transportation, and lipid fusion. Hence, molecular-level elucidation of the properties of water at lipid interfaces is of the utmost importance. We report the two-dimensional heterodyne-detected vibrational sum frequency generation (2D HD-VSFG) study of the OH stretch of HOD at charged lipid interfaces, which shows that the hydrogen bond dynamics of interfacial water differ drastically, depending on the lipids. The data indicate that the spectral diffusion of the OH stretch at a positively charged lipid interface is dominated by the ultrafast (<∼100 fs) component, followed by the minor sub-picosecond slow dynamics, while the dynamics at a negatively charged lipid interface exhibit sub-picosecond dynamics almost exclusively, implying that fast hydrogen bond fluctuation is prohibited. These results reveal that the ultrafast hydrogen bond dynamics at the positively charged lipid-water interface are attributable to the bulk-like property of interfacial water, whereas the slow dynamics at the negatively charged lipid interface are due to bound water, which is hydrogen-bonded to the hydrophilic head group.
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Affiliation(s)
- Prashant Chandra Singh
- Molecular Spectroscopy Laboratory, RIKEN, 2-1 Hirosawa, Wako, Saitama, 351-0198, Japan.,Department of Spectroscopy, Indian Association for the Cultivation of Science, Jadavpur, Kolkata, 700032, India
| | - Ken-Ichi Inoue
- Molecular Spectroscopy Laboratory, RIKEN, 2-1 Hirosawa, Wako, Saitama, 351-0198, Japan
| | - Satoshi Nihonyanagi
- Molecular Spectroscopy Laboratory, RIKEN, 2-1 Hirosawa, Wako, Saitama, 351-0198, Japan.,Ultrafast Spectroscopy Research Team, RIKEN Center for Advanced Photonics (RAP), RIKEN, 2-1 Hirosawa, Wako, Saitama, 351-0198, Japan
| | - Shoichi Yamaguchi
- Molecular Spectroscopy Laboratory, RIKEN, 2-1 Hirosawa, Wako, Saitama, 351-0198, Japan.,Department of Applied Chemistry, Graduate School of Science and Engineering, Saitama University, 255 Shimo-Okubo, Sakura, Saitama, 338-8570, Japan
| | - Tahei Tahara
- Molecular Spectroscopy Laboratory, RIKEN, 2-1 Hirosawa, Wako, Saitama, 351-0198, Japan. .,Ultrafast Spectroscopy Research Team, RIKEN Center for Advanced Photonics (RAP), RIKEN, 2-1 Hirosawa, Wako, Saitama, 351-0198, Japan.
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66
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Kundu A, Kwak K, Cho M. Water Structure at the Lipid Multibilayer Surface: Anionic Versus Cationic Head Group Effects. J Phys Chem B 2016; 120:5002-7. [PMID: 27171689 DOI: 10.1021/acs.jpcb.6b02340] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Membrane water interface is a potential reaction site for many biochemical reactions. Therefore, a molecular level understanding of water structure and dynamics that strongly depend on the chemical structure of lipid is prerequisite for elucidating the role of water in biological reactions on membrane surface. Recently, we carried out femtosecond infrared pump-probe studies of water structure and dynamics at multibilayer surfaces of zwitterionic phosphatidylcholine-analogue lipid ( J. Phys. Chem. Lett. 2016 , 7 , 741 ). Here, to further elucidate the anionic and cationic headgroup effects on water, we study vibrational dynamics of water on lipid multibilayers formed by anionic phospho-glycerol lipid molecules as well as by cationic choline-derivatized lipid molecules. We observed two significantly different vibrational lifetime components (very fast 0.5 ps and slow 1.9 ps) of the OD stretch mode of HOD molecules at the negatively charged phospho-lipid multibilayer whereas only one vibrational lifetime component (1.6 ps) was observed at the positively charged choline-derivatized lipid multibilayer. From the detailed analyses about the vibrational energy and rotational relaxations of HOD molecules in lipid multibilayers composed of anionic lipid with phosphate and cationic lipid without phosphate, the role of phosphate group in structuring water molecules at phospholipid membrane interface is revealed.
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Affiliation(s)
- Achintya Kundu
- Center for Molecular Spectroscopy and Dynamics, Institute for Basic Science (IBS), Korea University , Seoul 02841, Republic of Korea.,Department of Chemistry, Korea University , Seoul 02841, Republic of Korea
| | - Kyungwon Kwak
- Center for Molecular Spectroscopy and Dynamics, Institute for Basic Science (IBS), Korea University , Seoul 02841, Republic of Korea.,Department of Chemistry, Korea University , Seoul 02841, Republic of Korea
| | - Minhaeng Cho
- Center for Molecular Spectroscopy and Dynamics, Institute for Basic Science (IBS), Korea University , Seoul 02841, Republic of Korea.,Department of Chemistry, Korea University , Seoul 02841, Republic of Korea
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67
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Burris PC, Laage D, Thompson WH. Simulations of the infrared, Raman, and 2D-IR photon echo spectra of water in nanoscale silica pores. J Chem Phys 2016; 144:194709. [DOI: 10.1063/1.4949766] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Paul C. Burris
- Department of Chemistry, University of Kansas, Lawrence, Kansas 66045, USA
| | - Damien Laage
- Département de Chimie, Ecole Normale Supérieure-PSL Research University, Sorbonne Universités-UPMC Univ Paris 06, CNRS UMR 8640 PASTEUR, 24 rue Lhomond, 75005 Paris, France
| | - Ward H. Thompson
- Department of Chemistry, University of Kansas, Lawrence, Kansas 66045, USA
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68
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Bellissent-Funel MC, Hassanali A, Havenith M, Henchman R, Pohl P, Sterpone F, van der Spoel D, Xu Y, Garcia AE. Water Determines the Structure and Dynamics of Proteins. Chem Rev 2016; 116:7673-97. [PMID: 27186992 DOI: 10.1021/acs.chemrev.5b00664] [Citation(s) in RCA: 540] [Impact Index Per Article: 67.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Water is an essential participant in the stability, structure, dynamics, and function of proteins and other biomolecules. Thermodynamically, changes in the aqueous environment affect the stability of biomolecules. Structurally, water participates chemically in the catalytic function of proteins and nucleic acids and physically in the collapse of the protein chain during folding through hydrophobic collapse and mediates binding through the hydrogen bond in complex formation. Water is a partner that slaves the dynamics of proteins, and water interaction with proteins affect their dynamics. Here we provide a review of the experimental and computational advances over the past decade in understanding the role of water in the dynamics, structure, and function of proteins. We focus on the combination of X-ray and neutron crystallography, NMR, terahertz spectroscopy, mass spectroscopy, thermodynamics, and computer simulations to reveal how water assist proteins in their function. The recent advances in computer simulations and the enhanced sensitivity of experimental tools promise major advances in the understanding of protein dynamics, and water surely will be a protagonist.
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Affiliation(s)
| | - Ali Hassanali
- International Center for Theoretical Physics, Condensed Matter and Statistical Physics 34151 Trieste, Italy
| | - Martina Havenith
- Ruhr-Universität Bochum , Faculty of Chemistry and Biochemistry Universitätsstraße 150 Building NC 7/72, D-44780 Bochum, Germany
| | - Richard Henchman
- Manchester Institute of Biotechnology The University of Manchester , 131 Princess Street, Manchester M1 7DN, United Kingdom
| | - Peter Pohl
- Johannes Kepler University , Gruberstrasse, 40 4020 Linz, Austria
| | - Fabio Sterpone
- Institut de Biologie Physico-Chimique Laboratoire de Biochimie Théorique 13 Rue Pierre et Marie Curie, 75005 Paris, France
| | - David van der Spoel
- Department of Cell and Molecular Biology, Computational and Systems Biology, Uppsala University , 751 24 Uppsala, Sweden
| | - Yao Xu
- Ruhr-Universität Bochum , Faculty of Chemistry and Biochemistry Universitätsstraße 150 Building NC 7/72, D-44780 Bochum, Germany
| | - Angel E Garcia
- Center for Non Linear Studies, Los Alamos National Laboratory , Los Alamos, New Mexico 87545, United States
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69
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Roy S, Skoff D, Perroni DV, Mondal J, Yethiraj A, Mahanthappa MK, Zanni MT, Skinner JL. Water Dynamics in Gyroid Phases of Self-Assembled Gemini Surfactants. J Am Chem Soc 2016; 138:2472-5. [DOI: 10.1021/jacs.5b12370] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Santanu Roy
- Department of Chemistry, University of Wisconsin, 1101 University
Avenue, Madison, Wisconsin 53706, United States
| | - David Skoff
- Department of Chemistry, University of Wisconsin, 1101 University
Avenue, Madison, Wisconsin 53706, United States
| | - Dominic V. Perroni
- Department of Chemistry, University of Wisconsin, 1101 University
Avenue, Madison, Wisconsin 53706, United States
| | - Jagannath Mondal
- Department of Chemistry, University of Wisconsin, 1101 University
Avenue, Madison, Wisconsin 53706, United States
| | - Arun Yethiraj
- Department of Chemistry, University of Wisconsin, 1101 University
Avenue, Madison, Wisconsin 53706, United States
| | - Mahesh K. Mahanthappa
- Department of Chemistry, University of Wisconsin, 1101 University
Avenue, Madison, Wisconsin 53706, United States
| | - Martin T. Zanni
- Department of Chemistry, University of Wisconsin, 1101 University
Avenue, Madison, Wisconsin 53706, United States
| | - James L. Skinner
- Department of Chemistry, University of Wisconsin, 1101 University
Avenue, Madison, Wisconsin 53706, United States
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70
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Sripradite J, Miller SA, Johnson MD, Tongraar A, Crans DC. How Interfaces Affect the Acidity of the Anilinium Ion. Chemistry 2016; 22:3873-80. [DOI: 10.1002/chem.201504804] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2015] [Indexed: 11/07/2022]
Affiliation(s)
- Jarukorn Sripradite
- School of Chemistry; Institute of Science; Suranaree University of Technology; Nakhon Ratchasima 30000 Thailand
- Department of Chemistry; Colorado State University; Fort Collins CO 80523 USA
- College of Industrial Technology; King Mongkut's University of Technology North Bangkok; Bangkok 10800 Thailand
| | - Susannah A. Miller
- Department of Chemistry; Colorado State University; Fort Collins CO 80523 USA
| | - Michael D. Johnson
- Department of Chemistry and Biochemistry; New Mexico State University; Las Cruces NM 88003 USA
| | - Anan Tongraar
- School of Chemistry; Institute of Science; Suranaree University of Technology; Nakhon Ratchasima 30000 Thailand
| | - Debbie C. Crans
- Department of Chemistry; Colorado State University; Fort Collins CO 80523 USA
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71
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Khan MF, Singh MK, Sen S. Measuring Size, Size Distribution, and Polydispersity of Water-in-Oil Microemulsion Droplets using Fluorescence Correlation Spectroscopy: Comparison to Dynamic Light Scattering. J Phys Chem B 2016; 120:1008-20. [DOI: 10.1021/acs.jpcb.5b09920] [Citation(s) in RCA: 51] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Mohammad Firoz Khan
- Spectroscopy Laboratory,
School of Physical Sciences, Jawaharlal Nehru University, New Delhi 110067, India
| | - Moirangthem Kiran Singh
- Spectroscopy Laboratory,
School of Physical Sciences, Jawaharlal Nehru University, New Delhi 110067, India
| | - Sobhan Sen
- Spectroscopy Laboratory,
School of Physical Sciences, Jawaharlal Nehru University, New Delhi 110067, India
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72
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Hande VR, Chakrabarty S. Exploration of the presence of bulk-like water in AOT reverse micelles and water-in-oil nanodroplets: the role of charged interfaces, confinement size and properties of water. Phys Chem Chem Phys 2016; 18:21767-79. [DOI: 10.1039/c6cp04378j] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Abstract
We show that the distance from the interface at which bulk-like properties are recovered strongly depends on the choice of order parameter being probed: translational < tetrahedral ≪ dipolar orientation.
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Affiliation(s)
- Vrushali R. Hande
- Physical and Materials Chemistry Division
- CSIR-National Chemical Laboratory
- Pune-411008
- India
| | - Suman Chakrabarty
- Physical and Materials Chemistry Division
- CSIR-National Chemical Laboratory
- Pune-411008
- India
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73
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Dutta Choudhury S, Vir P, Mohanty J, Bhasikuttan AC, Pal H. Selective prototropism of lumichrome in cationic micelles and reverse micelles: a photophysical perspective. RSC Adv 2016. [DOI: 10.1039/c5ra23562f] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
BHDC micelles and reverse micelles selectively transform the alloxazine form of lumichrome to the anionic isoalloxazine form, around neutral pH.
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Affiliation(s)
| | - Praveen Vir
- Radiation & Photochemistry Division
- Bhabha Atomic Research Centre
- Mumbai 400 085
- India
| | - Jyotirmayee Mohanty
- Radiation & Photochemistry Division
- Bhabha Atomic Research Centre
- Mumbai 400 085
- India
| | | | - Haridas Pal
- Radiation & Photochemistry Division
- Bhabha Atomic Research Centre
- Mumbai 400 085
- India
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74
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Dynamic heterogeneity controls diffusion and viscosity near biological interfaces. Nat Commun 2015; 5:3034. [PMID: 24398864 PMCID: PMC3971065 DOI: 10.1038/ncomms4034] [Citation(s) in RCA: 43] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2013] [Accepted: 11/29/2013] [Indexed: 11/14/2022] Open
Abstract
At a nanometer scale, the behavior of biological fluids is largely governed by interfacial physical chemistry. This may manifest as slowed or anomalous diffusion. Here we describe how measures developed for studying glassy systems allow quantitative measurement of interfacial effects on water dynamics, showing that correlated motions of particles near a surface result in a viscosity greater than anticipated from individual particle motions. This effect arises as a fundamental consequence of spatial heterogeneity on nanometer length scales and applies to any fluid near any surface. Increased interfacial viscosity also causes the classic finding that large solutes such as proteins diffuse much more slowly than predicted in bulk water. This has previously been treated via an empirical correction to the solute size: the hydrodynamic radius. Using measurements of quantities from theories of glass dynamics, we can now calculate diffusion constants from molecular details alone, eliminating the empirical correction factor.
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75
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Chen M, Lu X, Liu X, Hou Q, Zhu Y, Zhou H. Slow dynamics of water confined in Newton black films. Phys Chem Chem Phys 2015; 17:19183-93. [PMID: 26135223 DOI: 10.1039/c5cp02908b] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Slowdown of translational and reorientational dynamics of water confined in Newton black films (NBFs) is revealed by molecular dynamics simulations. As a film becomes thinner, both translational and reorientational dynamics become slower. The polarization of water molecules in the macroscopic electrostatic field across the NBF and the coordination of Na(+) ions and surfactant anionic groups around water molecules concertedly lead to slowdown of water dynamics. The polarization effect is obvious for water not coordinated by Na(+) ions, which exhibits reorientational dynamics depending on initial dipole orientations. Na(+) ions and surfactant anionic groups retard dynamics of surrounding water by decreasing the hydrogen bond exchange probability and increasing the viscosity of water. The dependences of translational and reorientational dynamics on coordination environments of water are similar. Dynamics of water in positions close to the interfaces of NBFs are mainly retarded by Na(+) ions and surfactant anionic groups, while the macroscopic polarization effect plays the main role in influencing water dynamics in positions far from the interfaces. This study sheds light on the improvement of knowledge about the water dynamics slowdown mechanism in similar environments like reverse micelles and lamellar structures.
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Affiliation(s)
- Meng Chen
- State Key Laboratory for Mineral Deposits Research, School of Earth Sciences and Engineering, Nanjing University, Nanjing, Jiangsu 210093, China.
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76
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Abstract
The heterotrimeric SecY translocon complex is required for the cotranslational assembly of membrane proteins in bacteria and archaea. The insertion of transmembrane (TM) segments during nascent-chain passage through the translocon is generally viewed as a simple partitioning process between the water-filled translocon and membrane lipid bilayer, suggesting that partitioning is driven by the hydrophobic effect. Indeed, the apparent free energy of partitioning of unnatural aliphatic amino acids on TM segments is proportional to accessible surface area, which is a hallmark of the hydrophobic effect [Öjemalm K, et al. (2011) Proc Natl Acad Sci USA 108(31):E359-E364]. However, the apparent partitioning solvation parameter is less than one-half the value expected for simple bulk partitioning, suggesting that the water in the translocon departs from bulk behavior. To examine the state of water in a SecY translocon complex embedded in a lipid bilayer, we carried out all-atom molecular-dynamics simulations of the Pyrococcus furiosus SecYE, which was determined to be in a "primed" open state [Egea PF, Stroud RM (2010) Proc Natl Acad Sci USA 107(40):17182-17187]. Remarkably, SecYE remained in this state throughout our 450-ns simulation. Water molecules within SecY exhibited anomalous diffusion, had highly retarded rotational dynamics, and aligned their dipoles along the SecY transmembrane axis. The translocon is therefore not a simple water-filled pore, which raises the question of how anomalous water behavior affects the mechanism of translocon function and, more generally, the partitioning of hydrophobic molecules. Because large water-filled cavities are found in many membrane proteins, our findings may have broader implications.
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77
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Singh PC, Nihonyanagi S, Yamaguchi S, Tahara T. Interfacial water in the vicinity of a positively charged interface studied by steady-state and time-resolved heterodyne-detected vibrational sum frequency generation. J Chem Phys 2015; 141:18C527. [PMID: 25399192 DOI: 10.1063/1.4897265] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023] Open
Abstract
To investigate the properties of water in the close vicinity of a positively charged surfactant/water interface, steady-state and femtosecond time-resolved interfacial vibrational spectra were measured in the presence of excess alkali halide salts. The steady-state Imχ((2)) spectra show a drastic intensity decrease with excess salts, indicating that the thickness of the probed water layer is substantially reduced. Fluoride salts do not noticeably affect spectral features in the OH stretch region whereas the chloride and bromide salts induce significant blue shifts of the OH stretch frequency. Femtosecond time-resolved ΔImχ((2)) spectra obtained with fluoride salts exhibit a very broad bleach even at 0 fs as observed without excess salts, while chloride and bromide salts give rise to a narrow spectral hole burning. These results indicate that the excess chloride and bromide ions strongly interact with interfacial water in the vicinity of the charged interface and it suppresses intramolecular coupling (i.e., Fermi resonance) that causes spectral broadening.
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Affiliation(s)
| | - Satoshi Nihonyanagi
- Molecular Spectroscopy Laboratory, RIKEN, 2-1 Hirosawa, Wako 351-0198, Japan
| | - Shoichi Yamaguchi
- Molecular Spectroscopy Laboratory, RIKEN, 2-1 Hirosawa, Wako 351-0198, Japan
| | - Tahei Tahara
- Molecular Spectroscopy Laboratory, RIKEN, 2-1 Hirosawa, Wako 351-0198, Japan
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78
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Tummala NR, Liu S, Argyris D, Striolo A. Interfacial water properties in the presence of surfactants. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2015; 31:2084-2094. [PMID: 25631335 DOI: 10.1021/la504388r] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
Water, because of its fundamental role in biology, geology, and many industrial applications and its anomalous behavior compared to that of simple fluids, continues to fascinate and attract extensive scientific interest. Building on previous studies of water in contact with different surfaces, in this study, we report results obtained from molecular dynamics simulations of water near hydrophilic and hydrophobic interfaces in the presence of nonionic and ionic amphiphilic molecules, hexaethylene glycol monododecyl ether (C12E6) and sodium dodecyl sulfate (SDS). We elucidate how these surfactants affect the packing (i.e., density profiles) and orientation of interfacial water. The results highlight the interplay of both surfactant charges and the substrate charge distribution predominantly with respect to the orientation of water molecules, up to distances longer than those expected based on simulation results on flat solid surfaces. We also quantify the dynamics of interfacial water molecules by computing the residence probability for water in contact with various substrates. We compare our results to those previously obtained for interfacial water on silica and graphite and also with experimental sum-frequency vibrational spectroscopy results at the air-water interface in the presence of surfactants. Our analysis could be useful for a better understanding of interfacial water not only near solid substrates but also near self-assembled/aggregated molecules at a variety of interfaces.
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Affiliation(s)
- Naga Rajesh Tummala
- School of Chemistry and Biochemistry, Georgia Institute of Technology , 901 Atlantic Drive, Atlanta, Georgia 30318, United States
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79
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Kayal A, Chandra A. Exploring the structure and dynamics of nano-confined water molecules using molecular dynamics simulations. MOLECULAR SIMULATION 2015. [DOI: 10.1080/08927022.2014.998212] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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80
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Nanda R, Kumar A. Phase Behavior, Diffusion, Structural Characteristics, and pH of Aqueous Hydrophobic Ionic Liquid Confined Media: Insights into Microviscosity and Microporsity in the [C4C4im][NTf2] + Water System. J Phys Chem B 2015; 119:1641-53. [DOI: 10.1021/jp511318t] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Raju Nanda
- Physical and Material Chemistry
Division, National Chemical Laboratory, Pune-411008, India
| | - Anil Kumar
- Physical and Material Chemistry
Division, National Chemical Laboratory, Pune-411008, India
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81
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Kwon Y, Park S. Complexation dynamics of CH3SCN and Li+ in acetonitrile studied by two-dimensional infrared spectroscopy. Phys Chem Chem Phys 2015; 17:24193-200. [DOI: 10.1039/c5cp02833g] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A chemical exchange 2DIR study of ion–molecule complexation dynamics in electrolyte solutions.
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Affiliation(s)
- YoungAh Kwon
- Department of Chemistry
- Korea University
- Seoul 136-701
- Korea
| | - Sungnam Park
- Department of Chemistry
- Korea University
- Seoul 136-701
- Korea
- Multidimensional Spectroscopy Laboratory
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82
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Silva OF, de Rossi RH, Correa NM. The hydrolysis of phenyl trifluoroacetate in AOT/n-heptane RMs as a sensor of the encapsulated water structure. RSC Adv 2015. [DOI: 10.1039/c5ra03532e] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
A study was carried out on the hydrolysis of phenyl trifluoroacetate (PTFA) in AOT/n-heptane/water reverse micelles.
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Affiliation(s)
- O. Fernando Silva
- Instituto de Investigaciones en Físico-Química de Córdoba
- INFIQC-CONICET
- Facultad de Ciencias Químicas
- Departamento de Química Orgánica
- Universidad Nacional de Córdoba
| | - Rita H. de Rossi
- Instituto de Investigaciones en Físico-Química de Córdoba
- INFIQC-CONICET
- Facultad de Ciencias Químicas
- Departamento de Química Orgánica
- Universidad Nacional de Córdoba
| | - N. Mariano Correa
- Departamento de Química
- Universidad Nacional de Río Cuarto
- Río Cuarto
- Argentina
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83
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Tookmanian EM, Fenlon EE, Brewer SH. Synthesis and Protein Incorporation of Azido-Modified Unnatural Amino Acids. RSC Adv 2014; 5:1274-1281. [PMID: 26478813 PMCID: PMC4603873 DOI: 10.1039/c4ra14244f] [Citation(s) in RCA: 84] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023] Open
Abstract
Two new azidophenylalanine residues (3 and 4) have been synthesized and, in combination with 4-azido-L-phenylalanine (1) and 4-azidomethyl-L-phenylalanine (2), form a series of unnatural amino acids (UAAs) containing the azide vibrational reporter at varying distances from the aromatic ring of phenylalanine. These UAAs were designed to probe protein hydration with high spatial resolution by utilizing the large extinction coefficient and environmental sensitivity of the azide asymmetric stretch vibration. The sensitivity of the azide reporters was investigated in solvents that mimic distinct local protein environments. Three of the four azido-modified phenylalanine residues were successfully genetically incorporated into a surface site in superfolder green fluorescent protein (sfGFP) utilizing an engineered, orthogonal aminoacyl-tRNA synthetase in response to an amber codon with high efficiency and fidelity. SDS-PAGE and ESI-Q-TOF mass analysis verified the site-specific incorporation of these UAAs. The observed azide asymmetric stretch in the linear IR spectra of these UAAs incorporated into sfGFP indicated that the azide groups were hydrated in the protein.
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Affiliation(s)
- Elise M. Tookmanian
- Franklin & Marshall College, Department of Chemistry, Lancaster, PA 17604-3003 USA
| | - Edward E. Fenlon
- Franklin & Marshall College, Department of Chemistry, Lancaster, PA 17604-3003 USA
| | - Scott H. Brewer
- Franklin & Marshall College, Department of Chemistry, Lancaster, PA 17604-3003 USA
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84
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Kwon Y, Lee C, Park S. Effect of ion–molecule interaction on fermi-resonance in acetonitrile studied by ultrafast vibrational spectroscopy. Chem Phys 2014. [DOI: 10.1016/j.chemphys.2014.10.017] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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85
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86
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Koninti RK, Gavvala K, Sengupta A, Hazra P. Excited State Proton Transfer Dynamics of Topotecan Inside Biomimicking Nanocavity. J Phys Chem B 2014; 119:2363-71. [DOI: 10.1021/jp5066902] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Raj Kumar Koninti
- Department
of Chemistry, Indian Institute of Science Education and Research (IISER), Pune 411008, Maharashtra, India
| | - Krishna Gavvala
- Department
of Chemistry, Indian Institute of Science Education and Research (IISER), Pune 411008, Maharashtra, India
| | - Abhigyan Sengupta
- Department
of Chemistry, Indian Institute of Science Education and Research (IISER), Pune 411008, Maharashtra, India
| | - Partha Hazra
- Department
of Chemistry, Indian Institute of Science Education and Research (IISER), Pune 411008, Maharashtra, India
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87
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Samart N, Beuning CN, Haller KJ, Rithner CD, Crans DC. Interaction of a biguanide compound with membrane model interface systems: probing the properties of antimalaria and antidiabetic compounds. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2014; 30:8697-8706. [PMID: 24956022 DOI: 10.1021/la501600s] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
Since membrane penetration is important for drug efficacy, how antimalarial precursor material 1-phenylbiguanide (PBG) interacts with an interface was characterized using a reverse micelle (RM) model system. (1)H NMR studies show that PBG partitions across the membrane interface. Specifically, the (1)H NMR studies showed that the 1-phenylbiguanide compound in an aqueous environment changed when placed near an interface. PBG is known to affect hydrogen bonding in water, and as the size of the RMs changes, the water organization in the water pool is changed. The NOESY spectrum of PBG in AOT RM contains cross-peak signals between the PBG protons and AOT protons, which is consistent with the penetration of the PBG into the interface. At the same time, there is a cross peak between the biguanide moiety and the HOD signal. This shows that these NH protons are near the HOD protons, placing the biguanide functional group in the water pool. Preliminary differential FTIR spectroscopic studies confirmed this location. In summary, we found that PBG interacts with different regions of the interface, with the phenyl group penetrating the hydrophobic interface while the biguanide remains in the water pool.
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Affiliation(s)
- Nuttaporn Samart
- School of Chemistry, Institute of Science, Suranaree University of Technology , Nakhon Ratchasima 30000 Thailand
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88
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Das A, Mitra RK. Does the optimum hydrophilic lipophilic balance condition affect the physical properties of mixed reverse micelles? A spectroscopic investigation. J Phys Chem B 2014; 118:5488-98. [PMID: 24791836 DOI: 10.1021/jp5028178] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Synergism in several physical properties as realized in many mixed surfactant reverse micellar (RM) systems often manifests optimum hydrophilic-lipophilic balance (HLB), interdroplet interaction, or both. Such synergism is often desired for specific applications of RM systems; however, a proper rationale on the effect of such phenomenon imparted on the structure, dynamics, and activity of water molecules in RM waterpool is strongly demanded. In the present contribution we have investigated how the optimum HLB condition of mixed RM composed two nonionic surfactants (Igepal 210 and Igepal 630) affects the physical properties of entrapped water molecules in the RM waterpool. The studied mixed RM exhibits synergistic water solubilization behavior as a function of the mixing ratio with a maximum in solubilization capacity being reached at X(Ig630) = 0.3. Dynamic light scattering (DLS) studies show a bimodal distribution of droplet size in this region, whereas it is monomodal in terminal compositions. Fourier transform infrared spectroscopy (FTIR) study in the 3000-3800 cm(-1) region identifies a linear trend in which the content of "bound" water increases at the expense of the "network" water as the content of the hydrophilic surfactant Igepal 630 is increased in the mixture. Subnanosecond relaxation dynamics of the entrapped water as revealed by the fluoroprobe coumarin 500 corroborates a similar linear trend as observed in the FTIR measurements as the rotational diffusion gets retarded with the increase of ethylene oxide chain length of Igepal. Reaction kinetics of solvolysis of benzoyl chloride reaction, however, does not offer any linear trend as it gets slower in the optimum HLB region, the nonlinearity being a consequence of the distribution of the substrate in the different phases.
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Affiliation(s)
- Arindam Das
- Department of Chemical, Biological and Macromolecular Sciences, S. N. Bose National Centre for Basic Sciences , Block JD, Sector III, Salt Lake, Kolkata, West Bengal 700098, India
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89
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Sharma S, Ganguli AK. Spherical-to-Cylindrical Transformation of Reverse Micelles and Their Templating Effect on the Growth of Nanostructures. J Phys Chem B 2014; 118:4122-31. [DOI: 10.1021/jp500697j] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Affiliation(s)
- Soma Sharma
- Department
of Chemistry, Indian Institute of Technology, Hauz Khas, New Delhi 110016, India
| | - Ashok K. Ganguli
- Department
of Chemistry, Indian Institute of Technology, Hauz Khas, New Delhi 110016, India
- Institute of Nano Science & Technology, Phase X, Mohali, Punjab 160062, India
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90
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Bianco V, Franzese G. Critical behavior of a water monolayer under hydrophobic confinement. Sci Rep 2014; 4:4440. [PMID: 24699181 PMCID: PMC3975237 DOI: 10.1038/srep04440] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/24/2013] [Accepted: 03/06/2014] [Indexed: 12/16/2022] Open
Abstract
The properties of water can have a strong dependence on the confinement. Here, we consider a water monolayer nanoconfined between hydrophobic parallel walls under conditions that prevent its crystallization. We investigate, by simulations of a many-body coarse-grained water model, how the properties of the liquid are affected by the confinement. We show, by studying the response functions and the correlation length and by performing finite-size scaling of the appropriate order parameter, that at low temperature the monolayer undergoes a liquid-liquid phase transition ending in a critical point in the universality class of the two-dimensional (2D) Ising model. Surprisingly, by reducing the linear size L of the walls, keeping the walls separation h constant, we find a 2D-3D crossover for the universality class of the liquid-liquid critical point for L=h ≃ 50, i.e. for a monolayer thickness that is small compared to its extension. This result is drastically different from what is reported for simple liquids, where the crossover occurs for L=h ≃ 5, and is consistent with experimental results and atomistic simulations. We shed light on these findings showing that they are a consequence of the strong cooperativity and the low coordination number of the hydrogen bond network that characterizes water.
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Affiliation(s)
- Valentino Bianco
- Departament de Física Fonamental, Universitat de Barcelona, Martí i Franquès 1, ES-08028 Barcelona, Spain
| | - Giancarlo Franzese
- Departament de Física Fonamental, Universitat de Barcelona, Martí i Franquès 1, ES-08028 Barcelona, Spain
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91
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Chatterjee A, Maity B, Seth D. Influence of double confinement on photophysics of 7-(diethylamino)coumarin-3-carboxylic acid in water/AOT/isooctane reverse micelles. RSC Adv 2014. [DOI: 10.1039/c4ra00965g] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
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92
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Valentine K, Mathies G, Bédard S, Nucci NV, Dodevski I, Stetz MA, Can TV, Griffin RG, Wand AJ. Reverse micelles as a platform for dynamic nuclear polarization in solution NMR of proteins. J Am Chem Soc 2014; 136:2800-7. [PMID: 24456213 PMCID: PMC3955360 DOI: 10.1021/ja4107176] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2013] [Indexed: 02/06/2023]
Abstract
Despite tremendous advances in recent years, solution NMR remains fundamentally restricted due to its inherent insensitivity. Dynamic nuclear polarization (DNP) potentially offers significant improvements in this respect. The basic DNP strategy is to irradiate the EPR transitions of a stable radical and transfer this nonequilibrium polarization to the hydrogen spins of water, which will in turn transfer polarization to the hydrogens of the macromolecule. Unfortunately, these EPR transitions lie in the microwave range of the electromagnetic spectrum where bulk water absorbs strongly, often resulting in catastrophic heating. Furthermore, the residence times of water on the surface of the protein in bulk solution are generally too short for efficient transfer of polarization. Here we take advantage of the properties of solutions of encapsulated proteins dissolved in low viscosity solvents to implement DNP in liquids. Such samples are largely transparent to the microwave frequencies required and thereby avoid significant heating. Nitroxide radicals are introduced into the reverse micelle system in three ways: attached to the protein, embedded in the reverse micelle shell, and free in the aqueous core. Significant enhancements of the water resonance ranging up to ∼-93 at 0.35 T were observed. We also find that the hydration properties of encapsulated proteins allow for efficient polarization transfer from water to the protein. These and other observations suggest that merging reverse micelle encapsulation technology with DNP offers a route to a significant increase in the sensitivity of solution NMR spectroscopy of proteins and other biomolecules.
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Affiliation(s)
- Kathleen
G. Valentine
- Johnson
Research Foundation and Department of Biochemistry and Biophysics, University of Pennsylvania, Philadelphia, Pennsylvania 19104-6059
| | - Guinevere Mathies
- Francis
Bitter Magnet Laboratory and Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139
| | - Sabrina Bédard
- Johnson
Research Foundation and Department of Biochemistry and Biophysics, University of Pennsylvania, Philadelphia, Pennsylvania 19104-6059
| | - Nathaniel V. Nucci
- Johnson
Research Foundation and Department of Biochemistry and Biophysics, University of Pennsylvania, Philadelphia, Pennsylvania 19104-6059
| | - Igor Dodevski
- Johnson
Research Foundation and Department of Biochemistry and Biophysics, University of Pennsylvania, Philadelphia, Pennsylvania 19104-6059
| | - Matthew A. Stetz
- Johnson
Research Foundation and Department of Biochemistry and Biophysics, University of Pennsylvania, Philadelphia, Pennsylvania 19104-6059
| | - Thach V. Can
- Francis
Bitter Magnet Laboratory and Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139
| | - Robert G. Griffin
- Francis
Bitter Magnet Laboratory and Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139
| | - A. Joshua Wand
- Johnson
Research Foundation and Department of Biochemistry and Biophysics, University of Pennsylvania, Philadelphia, Pennsylvania 19104-6059
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93
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Lee J, Jeon J, Kim MS, Lee H, Cho M. Amide I IR probing of core and shell hydrogen-bond structures in reverse micelles. PURE APPL CHEM 2014. [DOI: 10.1515/pac-2014-5016] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
Abstract
The properties of N-methylacetamide (NMA) molecules encapsulated in the reverse micelles (RMs) formed by anionic surfactant aerosol OT (AOT), are studied with vibrational spectroscopy and computation. Vibrational spectra of the amide I′ mode of the fully deuterated NMA-d7 show gradual increase of peak frequencies and line broadening as the size of RMs decreases. Analyses of the spectral features reveal the presence of three states of NMA-d7 that correspond to NMA located in the core of water phase (absorption frequency of 1606 cm–1) and two types of interfacial NMA near the surfactant layer (1620 and 1644 cm–1). In larger RMs with water content w0 = [D2O]/[AOT] ≥ 10, only the first two states are observed, whereas in smaller RMs, the population of the third state grows up to 25 % at w0 = 2. These results indicate the general validity of the two-state core/shell model for the confined aqueous solution of NMA, with small modifications due to the system-dependent solute-interface interaction. However, simulations of small RM systems with w0 ≤ 15 show continuous variations of the population, frequency shifts, and the solute-solvent interaction strengths at solute-interface distance less than 4 Å. Thus, the distinction of solute core/shell states tends to be blurred in small RMs but is still effective in interpreting the average spectroscopic observables.
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94
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Patra A, Luong TQ, Mitra RK, Havenith M. The influence of charge on the structure and dynamics of water encapsulated in reverse micelles. Phys Chem Chem Phys 2014; 16:12875-83. [DOI: 10.1039/c4cp00386a] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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95
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Soper AK. Radical re-appraisal of water structure in hydrophilic confinement. Chem Phys Lett 2013; 590:1-15. [PMID: 25843963 PMCID: PMC4376068 DOI: 10.1016/j.cplett.2013.10.075] [Citation(s) in RCA: 36] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2013] [Accepted: 10/22/2013] [Indexed: 11/29/2022]
Abstract
The structure of water confined in MCM41 silica cylindrical pores is studied to determine whether confined water is simply a version of the bulk liquid which can be substantially supercooled without crystallisation. A combination of total neutron scattering from the porous silica, both wet and dry, and computer simulation using a realistic model of the scattering substrate is used. The water in the pore is divided into three regions: core, interfacial and overlap. The average local densities of water in these simulations are found to be about 20% lower than bulk water density, while the density in the core region is below, but closer to, the bulk density. There is a decrease in both local and core densities when the temperature is lowered from 298 K to 210 K. The radical proposal is made here that water in hydrophilic confinement is under significant tension, around -100 MPa, inside the pore.
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96
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Sokolowsky KP, Fayer MD. Dynamics in the isotropic phase of nematogens using 2D IR vibrational echo measurements on natural-abundance 13CN and extended lifetime probes. J Phys Chem B 2013; 117:15060-71. [PMID: 24156524 DOI: 10.1021/jp4071955] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The long time scale orientational relaxation of nematogens in the isotropic phase is associated with the randomization of pseudonematic domains, which have a correlation length that grows as the isotropic-to-nematic phase transition temperature is approached from above. Here we begin to address the fast dynamics of the nematogen molecules within the domains using two-dimensional infrared (2D IR) vibrational echo experiments. The problems of performing ultrafast IR experiments in pure liquids are discussed, and solutions are presented. In addition, the issue of short vibrational lifetimes, which limit the ability of 2D IR experiments to examine dynamics over a wide range of times, is addressed. The experiments were performed on the nematogen 4-cyano-4'-pentylbiphenyl (5CB), with the CN stretch initially used as the vibrational probe. Although the CN stretch has a small transition dipole, because the sample is a pure liquid it is necessary to use an exceedingly thin sample to perform the experiments. The small sample volume leads to massive heating effects that distort the results. In addition, the high concentration in the pure liquid can result in vibrational excitation transfer that interferes with the measurements of structural dynamics, and the CN vibrational lifetime is very short (3.6 ps). These problems were overcome by performing the experiments on the natural-abundance (13)CN stretch (5(13)CB), which greatly reduced the absorbance, eliminating the heating problems; also, this stretch has a longer lifetime (7.9 ps). Experiments were also performed on benzonitrile, which showed that the heating problems associated with pure liquids are not unique to 5CB. Again, the problems were eliminated by conducting measurements on the (13)CN stretch, which has an even longer lifetime (20.2 ps) compared with the (12)CN stretch (5.6 ps). Finally, to extend the range of the dynamical measurements, 4-pentyl-4'-thiocyanobiphenyl (5SCB) was synthesized and studied as a dilute solute in 5CB. The CN stretch of 5SCB has a vibrational lifetime of 103 ps, which permits dynamical measurements to 200 ps, revealing the full range of fast structural dynamics in the isotropic phase of 5CB. It is shown that the 5SCB probe reports essentially the same dynamics as 5(13)CB on the short time scale that is observable with the 5(13)CB vibrational probe.
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Affiliation(s)
- Kathleen P Sokolowsky
- Department of Chemistry, Stanford University , Stanford, California 94305, United States
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97
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Maity A, Das S, Ghosh P, Das T, Seth SK, Mondal S, Gupta P, Purkayastha P. Dynamics of pyrenesemicarbazide and pyrenethiosemicarbazide in reverse micelle of AOT in n-heptane: Probing critical penetration of water molecules toward the palisade. Chem Phys Lett 2013. [DOI: 10.1016/j.cplett.2013.09.055] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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98
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Tomkins J, Hanna G. Signatures of nanoconfinement on the linear and nonlinear vibrational spectroscopy of a model hydrogen-bonded complex dissolved in a polar solvent. J Phys Chem B 2013; 117:13619-30. [PMID: 24079369 DOI: 10.1021/jp407469f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The one-dimensional IR (1D-IR) absorption and IR pump-probe spectra of a hydrogen stretch in a model hydrogen-bonded complex dissolved in a polar solvent confined in spherical hydrophobic cavities of different sizes were simulated using ground-state mixed quantum-classical dynamics. Due to a thorough analysis of key properties of the complex and solvent from equilibrium trajectory data, we were able to gain insight into the microscopic details underlying the spectra. Both the 1D-IR and IR pump-probe spectra manifested the effects of confinement on the relative stabilities of the covalent and ionic forms of the complex through pronounced changes in their peak intensities and numbers. However, in contrast to the 1D-IR spectra, the time-resolved pump-probe spectra were found to be uniquely sensitive to the changes in the molecular dynamics as the cavity size is varied. In particular, it was found that the variations in the time evolutions of the peak intensities in the pump-probe spectra reflect the differences in the solvation dynamics associated with the various forms of the complex in different locations within the cavities. The ability to detect these differences underscores the advantage of using pump-probe spectroscopy for studying nanoconfined systems.
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Affiliation(s)
- Joseph Tomkins
- Department of Chemistry, University of Alberta , Edmonton, Alberta, Canada T6G 2G2
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99
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Son H, Nam D, Park S. Real-Time Probing of Hydrogen-Bond Exchange Dynamics in Aqueous NaPF6 Solutions by Two-Dimensional Infrared Spectroscopy. J Phys Chem B 2013; 117:13604-13. [DOI: 10.1021/jp406805c] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Hyewon Son
- Department
of Chemistry, Korea University, Seoul 136-713, Korea
| | - Dayoung Nam
- Department
of Chemistry, Korea University, Seoul 136-713, Korea
| | - Sungnam Park
- Department
of Chemistry, Korea University, Seoul 136-713, Korea
- Multidimensional
Spectroscopy Laboratory, Korea Basic Science Institute, Seoul 136-713, Korea
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100
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Interfacial composition and characterization of a quaternary water-in-oil mixed surfactant (cationic of different alkyl chain lengths+polyoxyethylene type nonionic) microemulsions in absence and presence of inorganic salts. Colloids Surf A Physicochem Eng Asp 2013. [DOI: 10.1016/j.colsurfa.2013.04.049] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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