51
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52
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Zhovtobriukh I, Besley NA, Fransson T, Nilsson A, Pettersson LGM. Relationship between x-ray emission and absorption spectroscopy and the local H-bond environment in water. J Chem Phys 2018; 148:144507. [DOI: 10.1063/1.5009457] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022] Open
Affiliation(s)
- Iurii Zhovtobriukh
- FYSIKUM, Stockholm University, Albanova University Center, SE-106 91 Stockholm, Sweden
| | - Nicholas A. Besley
- School of Chemistry, The University of Nottingham, University Park, Nottingham NG72RD, United Kingdom
| | - Thomas Fransson
- Stanford PULSE Institute, SLAC National Accelerator Laboratory, Menlo Park, California 94025,
USA
| | - Anders Nilsson
- FYSIKUM, Stockholm University, Albanova University Center, SE-106 91 Stockholm, Sweden
| | - Lars G. M. Pettersson
- FYSIKUM, Stockholm University, Albanova University Center, SE-106 91 Stockholm, Sweden
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53
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Abstract
Trajectory procedures are used to study the collision between the vibrationally excited H2O and the ground-state (H2O)2 with particular reference to energy transfer to the hydrogen bond through the inter- and intramolecular pathways. In nearly 98% of the trajectories, energy transfer processes occur on a subpicosecond scale (≤0.7 ps). The H2O transfers approximately three-quarters of its excitation energy to the OH stretches of the dimer. The first step of the intramolecular pathway in the dimer involves a near-resonant first overtone transition from the OH stretch to the bending mode. The energy transfer probability in the presence of the 1:2 resonance is 0.61 at 300 K. The bending mode then redistributes its energy to low-frequency intermolecular vibrations in a series of small excitation steps, with the pathway which results in the hydrogen-bonding modes gaining most of the available energy. The hydrogen bonding in ∼50% of the trajectories ruptures on vibrational excitation, leaving one quantum in the bend of the monomer fragment. In a small fraction of trajectories, the duration of collision is longer than 1 ps, during which the dimer and H2O form a short-lived complex through a secondary hydrogen bond, which undergoes large amplitude oscillations.
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Affiliation(s)
- H K Shin
- Department of Chemistry , University of Nevada , Reno , Nevada 89557 , United States
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54
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Ojha D, Henao A, Kühne TD. Nuclear quantum effects on the vibrational dynamics of liquid water. J Chem Phys 2018; 148:102328. [PMID: 29544291 DOI: 10.1063/1.5005500] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
Based on quantum-mechanical path-integral molecular dynamics simulations, the impact of nuclear quantum effects on the vibrational and hydrogen bond dynamics in liquid water is investigated. The instantaneous fluctuations in the frequencies of the O-H stretch modes are calculated using the wavelet method of time-series analysis, while the time scales of the vibrational spectral diffusion are determined from frequency-time correlation functions, joint probability distributions, and the slope of three-pulse photon echo. We find that the inclusion of nuclear quantum effects leads not only to a redshift of the vibrational frequency distribution by around 130 cm-1 but also to an acceleration of the vibrational dynamics by as much as 30%. In addition, quantum fluctuations also entail a significantly faster decay of correlation in the initial diffusive regime, which is in agreement with recent vibrational echo experiments.
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Affiliation(s)
- Deepak Ojha
- Dynamics of Condensed Matter and Center for Sustainable Systems Design, Department of Chemistry, University of Paderborn, Warburger Str. 100, D-33098 Paderborn, Germany
| | - Andrés Henao
- Dynamics of Condensed Matter and Center for Sustainable Systems Design, Department of Chemistry, University of Paderborn, Warburger Str. 100, D-33098 Paderborn, Germany
| | - Thomas D Kühne
- Dynamics of Condensed Matter and Center for Sustainable Systems Design, Department of Chemistry, University of Paderborn, Warburger Str. 100, D-33098 Paderborn, Germany
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55
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Affiliation(s)
- Xinzijian Liu
- Beijing National Laboratory For Molecular Sciences, Institute of Theoretical and Computational Chemistry, College of Chemistry and Molecular Engineering, Peking University, Beijing, China
| | - Jian Liu
- Beijing National Laboratory For Molecular Sciences, Institute of Theoretical and Computational Chemistry, College of Chemistry and Molecular Engineering, Peking University, Beijing, China
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56
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Temelso B, Klein KL, Mabey JW, Pérez C, Pate BH, Kisiel Z, Shields GC. Exploring the Rich Potential Energy Surface of (H2O)11 and Its Physical Implications. J Chem Theory Comput 2018; 14:1141-1153. [DOI: 10.1021/acs.jctc.7b00938] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Affiliation(s)
- Berhane Temelso
- Provost’s
Office and Department of Chemistry, Furman University, Greenville, South Carolina 29613, United States
- Dean’s
Office, College of Arts and Sciences, and Department of Chemistry, Bucknell University, Lewisburg, Pennsylvania 17837, United States
| | - Katurah L. Klein
- Dean’s
Office, College of Arts and Sciences, and Department of Chemistry, Bucknell University, Lewisburg, Pennsylvania 17837, United States
| | - Joel W. Mabey
- Dean’s
Office, College of Arts and Sciences, and Department of Chemistry, Bucknell University, Lewisburg, Pennsylvania 17837, United States
| | - Cristóbal Pérez
- Department
of Chemistry, University of Virginia, McCormick Road, Charlottesville, Virginia 22904-4319, United States
- Max Planck Institute for the Structure and Dynamics of Matter, Luruper Chausse 149, D-22761 Hamburg, Germany
| | - Brooks H. Pate
- Department
of Chemistry, University of Virginia, McCormick Road, Charlottesville, Virginia 22904-4319, United States
| | - Zbigniew Kisiel
- Institute
of Physics, Polish Academy of Sciences, Al. Lotników 32/46, 02-668 Warszawa, Poland
| | - George C. Shields
- Provost’s
Office and Department of Chemistry, Furman University, Greenville, South Carolina 29613, United States
- Dean’s
Office, College of Arts and Sciences, and Department of Chemistry, Bucknell University, Lewisburg, Pennsylvania 17837, United States
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57
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Reddy SK, Moberg DR, Straight SC, Paesani F. Temperature-dependent vibrational spectra and structure of liquid water from classical and quantum simulations with the MB-pol potential energy function. J Chem Phys 2017; 147:244504. [DOI: 10.1063/1.5006480] [Citation(s) in RCA: 65] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023] Open
Affiliation(s)
- Sandeep K. Reddy
- Department of Chemistry and Biochemistry, University of California San Diego, La Jolla, California 92093, USA
| | - Daniel R. Moberg
- Department of Chemistry and Biochemistry, University of California San Diego, La Jolla, California 92093, USA
| | - Shelby C. Straight
- Department of Chemistry and Biochemistry, University of California San Diego, La Jolla, California 92093, USA
| | - Francesco Paesani
- Department of Chemistry and Biochemistry, Materials Science and Engineering, and San Diego Supercomputer Center, University of California San Diego, La Jolla, California 92093, USA
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58
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Demerdash O, Wang L, Head‐Gordon T. Advanced models for water simulations. WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL MOLECULAR SCIENCE 2017. [DOI: 10.1002/wcms.1355] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Omar Demerdash
- Kenneth S. Pitzer Center for Theoretical Chemistry University of California Berkeley CA USA
- Department of Chemistry University of California Berkeley CA USA
| | - Lee‐Ping Wang
- Department of Chemistry University of California, Davis Davis CA USA
| | - Teresa Head‐Gordon
- Kenneth S. Pitzer Center for Theoretical Chemistry University of California Berkeley CA USA
- Department of Chemistry University of California Berkeley CA USA
- Department of Bioengineering University of California Berkeley CA USA
- Department of Chemical and Biomolecular Engineering University of California Berkeley CA USA
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59
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Riera M, Mardirossian N, Bajaj P, Götz AW, Paesani F. Toward chemical accuracy in the description of ion–water interactions through many-body representations. Alkali-water dimer potential energy surfaces. J Chem Phys 2017; 147:161715. [DOI: 10.1063/1.4993213] [Citation(s) in RCA: 46] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023] Open
Affiliation(s)
- Marc Riera
- Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla, California 92093, USA
| | - Narbe Mardirossian
- Department of Chemistry, University of California, Berkeley, California 94720, USA
| | - Pushp Bajaj
- Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla, California 92093, USA
| | - Andreas W. Götz
- San Diego Supercomputer Center, University of California, San Diego, La Jolla, California 92093, USA
| | - Francesco Paesani
- Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla, California 92093, USA
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60
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Hamm P, Fanourgakis GS, Xantheas SS. A surprisingly simple correlation between the classical and quantum structural networks in liquid water. J Chem Phys 2017; 147:064506. [DOI: 10.1063/1.4993166] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Peter Hamm
- Department of Chemistry, University of Zurich, Zurich 8057, Switzerland
| | - George S. Fanourgakis
- Environmental Chemical Processes Laboratory, Department of Chemistry, University of Crete, P.O. Box 2208, 70013 Heraklion, Greece
| | - Sotiris S. Xantheas
- Advanced Computing, Mathematics and Data Division, Pacific Northwest National Laboratory, 902 Battelle Boulevard, P.O. Box 999, MS K1-83, Richland, Washington 99352, USA
- Department of Chemistry, University of Washington, Seattle, Washington 98195, USA
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61
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Galib M, Duignan TT, Misteli Y, Baer MD, Schenter GK, Hutter J, Mundy CJ. Mass density fluctuations in quantum and classical descriptions of liquid water. J Chem Phys 2017; 146:244501. [DOI: 10.1063/1.4986284] [Citation(s) in RCA: 37] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022] Open
Affiliation(s)
- Mirza Galib
- Physical Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99354, USA
| | - Timothy T. Duignan
- Physical Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99354, USA
| | - Yannick Misteli
- Physical Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99354, USA
| | - Marcel D. Baer
- Physical Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99354, USA
| | - Gregory K. Schenter
- Physical Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99354, USA
| | - Jürg Hutter
- Physical Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99354, USA
| | - Christopher J. Mundy
- Physical Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99354, USA
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62
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Brown SE, Götz AW, Cheng X, Steele RP, Mandelshtam VA, Paesani F. Monitoring Water Clusters “Melt” Through Vibrational Spectroscopy. J Am Chem Soc 2017; 139:7082-7088. [DOI: 10.1021/jacs.7b03143] [Citation(s) in RCA: 55] [Impact Index Per Article: 7.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Affiliation(s)
| | | | - Xiaolu Cheng
- Department
of Chemistry and Henry Eyring Center for Theoretical Chemistry, University of Utah, Salt Lake City, Utah 84112, United States
| | - Ryan P. Steele
- Department
of Chemistry and Henry Eyring Center for Theoretical Chemistry, University of Utah, Salt Lake City, Utah 84112, United States
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63
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Mouhat F, Sorella S, Vuilleumier R, Saitta AM, Casula M. Fully Quantum Description of the Zundel Ion: Combining Variational Quantum Monte Carlo with Path Integral Langevin Dynamics. J Chem Theory Comput 2017; 13:2400-2417. [DOI: 10.1021/acs.jctc.7b00017] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Affiliation(s)
- Félix Mouhat
- IMPMC, Sorbonne Universités, Université Pierre et Marie Curie Paris 06, CNRS UMR 7590, IRD UMR 206, MNHN, 4 place Jussieu, 75252 Paris, France
| | - Sandro Sorella
- International
School for Advanced Studies (SISSA), Via Bonomea 26, 34136 Trieste, Italy
- INFM Democritos
National Simulation Center, 34151 Trieste, Italy
| | - Rodolphe Vuilleumier
- PASTEUR,
Département de chimie, École normale supérieure,
UPMC Univ Paris 06, CNRS, PSL Research University, 75005 Paris, France
- Sorbonne Universités, UPMC Univ Paris 06, École normale supérieure, CNRS, Processus d’activation
sélective par transfert d’énergie uni-électronique
ou radiatif (PASTEUR), 75005 Paris, France
| | - Antonino Marco Saitta
- IMPMC, Sorbonne Universités, Université Pierre et Marie Curie Paris 06, CNRS UMR 7590, IRD UMR 206, MNHN, 4 place Jussieu, 75252 Paris, France
| | - Michele Casula
- IMPMC, Sorbonne Universités, Université Pierre et Marie Curie Paris 06, CNRS UMR 7590, IRD UMR 206, MNHN, 4 place Jussieu, 75252 Paris, France
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64
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Affiliation(s)
- Emilie B. Guidez
- Department of Chemistry, Iowa State University, Ames, Iowa 50011, United States
| | - Mark S. Gordon
- Department of Chemistry, Iowa State University, Ames, Iowa 50011, United States
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65
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Pham CH, Reddy SK, Chen K, Knight C, Paesani F. Many-Body Interactions in Ice. J Chem Theory Comput 2017; 13:1778-1784. [DOI: 10.1021/acs.jctc.6b01248] [Citation(s) in RCA: 46] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Affiliation(s)
- C. Huy Pham
- Department
of Chemistry and Biochemistry, University of California−San Diego, La Jolla, California 92093, United States
| | - Sandeep K. Reddy
- Department
of Chemistry and Biochemistry, University of California−San Diego, La Jolla, California 92093, United States
| | - Karl Chen
- Department
of Chemistry and Biochemistry, University of California−San Diego, La Jolla, California 92093, United States
| | - Chris Knight
- Leadership
Computing Facility, Argonne National Laboratory, 9700 South Cass Avenue, Argonne, Illinois 60439, United States
| | - Francesco Paesani
- Department
of Chemistry and Biochemistry, University of California−San Diego, La Jolla, California 92093, United States
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66
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Metz MP, Piszczatowski K, Szalewicz K. Automatic Generation of Intermolecular Potential Energy Surfaces. J Chem Theory Comput 2016; 12:5895-5919. [DOI: 10.1021/acs.jctc.6b00913] [Citation(s) in RCA: 38] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Michael P. Metz
- Department of Physics and
Astronomy, University of Delaware, Newark, Delaware 19716, United States
| | - Konrad Piszczatowski
- Department of Physics and
Astronomy, University of Delaware, Newark, Delaware 19716, United States
| | - Krzysztof Szalewicz
- Department of Physics and
Astronomy, University of Delaware, Newark, Delaware 19716, United States
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67
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Reddy SK, Straight SC, Bajaj P, Huy Pham C, Riera M, Moberg DR, Morales MA, Knight C, Götz AW, Paesani F. On the accuracy of the MB-pol many-body potential for water: Interaction energies, vibrational frequencies, and classical thermodynamic and dynamical properties from clusters to liquid water and ice. J Chem Phys 2016; 145:194504. [DOI: 10.1063/1.4967719] [Citation(s) in RCA: 161] [Impact Index Per Article: 20.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022] Open
Affiliation(s)
- Sandeep K. Reddy
- Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla, California 92093, USA
| | - Shelby C. Straight
- Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla, California 92093, USA
| | - Pushp Bajaj
- Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla, California 92093, USA
| | - C. Huy Pham
- Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla, California 92093, USA
| | - Marc Riera
- Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla, California 92093, USA
| | - Daniel R. Moberg
- Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla, California 92093, USA
| | - Miguel A. Morales
- Lawrence Livermore National Laboratory, 7000 East Avenue, Livermore, California 94550, USA
| | - Chris Knight
- Leadership Computing Facility, Argonne National Laboratory, 9700 South Cass Avenue, Argonne, Illinois 60439, USA
| | - Andreas W. Götz
- San Diego Supercomputer Center, University of California, San Diego, La Jolla, California 92093, USA
| | - Francesco Paesani
- Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla, California 92093, USA
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68
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Paesani F. Getting the Right Answers for the Right Reasons: Toward Predictive Molecular Simulations of Water with Many-Body Potential Energy Functions. Acc Chem Res 2016; 49:1844-51. [PMID: 27548325 DOI: 10.1021/acs.accounts.6b00285] [Citation(s) in RCA: 100] [Impact Index Per Article: 12.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Abstract
The central role played by water in fundamental processes relevant to different disciplines, including chemistry, physics, biology, materials science, geology, and climate research, cannot be overemphasized. It is thus not surprising that, since the pioneering work by Stillinger and Rahman, many theoretical and computational studies have attempted to develop a microscopic description of the unique properties of water under different thermodynamic conditions. Consequently, numerous molecular models based on either molecular mechanics or ab initio approaches have been proposed over the years. However, despite continued progress, the correct prediction of the properties of water from small gas-phase clusters to the liquid phase and ice through a single molecular model remains challenging. To large extent, this is due to the difficulties encountered in the accurate modeling of the underlying hydrogen-bond network in which both number and strength of the hydrogen bonds vary continuously as a result of a subtle interplay between energetic, entropic, and nuclear quantum effects. In the past decade, the development of efficient algorithms for correlated electronic structure calculations of small molecular complexes, accompanied by tremendous progress in the analytical representation of multidimensional potential energy surfaces, opened the doors to the design of highly accurate potential energy functions built upon rigorous representations of the many-body expansion (MBE) of the interaction energies. This Account provides a critical overview of the performance of the MB-pol many-body potential energy function through a systematic analysis of energetic, structural, thermodynamic, and dynamical properties as well as of vibrational spectra of water from the gas to the condensed phase. It is shown that MB-pol achieves unprecedented accuracy across all phases of water through a quantitative description of each individual term of the MBE, with a physically correct representation of both short- and long-range many-body contributions. Comparisons with experimental data probing different regions of the water potential energy surface from clusters to bulk demonstrate that MB-pol represents a major step toward the long-sought-after "universal model" capable of accurately describing the molecular properties of water under different conditions and in different environments. Along this path, future challenges include the extension of the many-body scheme adopted by MB-pol to the description of generic solutes as well as the integration of MB-pol in an efficient theoretical and computational framework to model acid-base reactions in aqueous environments. In this context, given the nontraditional form of the MB-pol energy and force expressions, synergistic efforts by theoretical/computational chemists/physicists and computer scientists will be critical for the development of high-performance software for many-body molecular dynamics simulations.
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Affiliation(s)
- Francesco Paesani
- Department of Chemistry and
Biochemistry, University of California—San Diego, La Jolla, California 92093, United States
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69
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Desgranges C, Delhommelle J. Evaluation of the grand-canonical partition function using expanded Wang-Landau simulations. IV. Performance of many-body force fields and tight-binding schemes for the fluid phases of silicon. J Chem Phys 2016; 144:124510. [PMID: 27036464 DOI: 10.1063/1.4944619] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We extend Expanded Wang-Landau (EWL) simulations beyond classical systems and develop the EWL method for systems modeled with a tight-binding Hamiltonian. We then apply the method to determine the partition function and thus all thermodynamic properties, including the Gibbs free energy and entropy, of the fluid phases of Si. We compare the results from quantum many-body (QMB) tight binding models, which explicitly calculate the overlap between the atomic orbitals of neighboring atoms, to those obtained with classical many-body (CMB) force fields, which allow to recover the tetrahedral organization in condensed phases of Si through, e.g., a repulsive 3-body term that favors the ideal tetrahedral angle. Along the vapor-liquid coexistence, between 3000 K and 6000 K, the densities for the two coexisting phases are found to vary significantly (by 5 orders of magnitude for the vapor and by up to 25% for the liquid) and to provide a stringent test of the models. Transitions from vapor to liquid are predicted to occur for chemical potentials that are 10%-15% higher for CMB models than for QMB models, and a ranking of the force fields is provided by comparing the predictions for the vapor pressure to the experimental data. QMB models also reveal the formation of a gap in the electronic density of states of the coexisting liquid at high temperatures. Subjecting Si to a nanoscopic confinement has a dramatic effect on the phase diagram with, e.g. at 6000 K, a decrease in liquid densities by about 50% for both CMB and QMB models and an increase in vapor densities between 90% (CMB) and 170% (QMB). The results presented here provide a full picture of the impact of the strategy (CMB or QMB) chosen to model many-body effects on the thermodynamic properties of the fluid phases of Si.
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Affiliation(s)
- Caroline Desgranges
- Department of Chemistry, University of North Dakota, 151 Cornell Street Stop 9024, Grand Forks, North Dakota 58202, USA
| | - Jerome Delhommelle
- Department of Chemistry, University of North Dakota, 151 Cornell Street Stop 9024, Grand Forks, North Dakota 58202, USA
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70
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Mallory JD, Mandelshtam VA. Diffusion Monte Carlo studies of MB-pol (H2O)2−6 and (D2O)2−6 clusters: Structures and binding energies. J Chem Phys 2016. [DOI: 10.1063/1.4960610] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Joel D. Mallory
- Department of Chemistry, University of California, Irvine, California 92697, USA
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71
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Cisneros G, Wikfeldt KT, Ojamäe L, Lu J, Xu Y, Torabifard H, Bartók AP, Csányi G, Molinero V, Paesani F. Modeling Molecular Interactions in Water: From Pairwise to Many-Body Potential Energy Functions. Chem Rev 2016; 116:7501-28. [PMID: 27186804 PMCID: PMC5450669 DOI: 10.1021/acs.chemrev.5b00644] [Citation(s) in RCA: 272] [Impact Index Per Article: 34.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2015] [Indexed: 12/17/2022]
Abstract
Almost 50 years have passed from the first computer simulations of water, and a large number of molecular models have been proposed since then to elucidate the unique behavior of water across different phases. In this article, we review the recent progress in the development of analytical potential energy functions that aim at correctly representing many-body effects. Starting from the many-body expansion of the interaction energy, specific focus is on different classes of potential energy functions built upon a hierarchy of approximations and on their ability to accurately reproduce reference data obtained from state-of-the-art electronic structure calculations and experimental measurements. We show that most recent potential energy functions, which include explicit short-range representations of two-body and three-body effects along with a physically correct description of many-body effects at all distances, predict the properties of water from the gas to the condensed phase with unprecedented accuracy, thus opening the door to the long-sought "universal model" capable of describing the behavior of water under different conditions and in different environments.
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Affiliation(s)
| | - Kjartan Thor Wikfeldt
- Science
Institute, University of Iceland, VR-III, 107, Reykjavik, Iceland
- Department
of Physics, Albanova, Stockholm University, S-106 91 Stockholm, Sweden
| | - Lars Ojamäe
- Department
of Chemistry, Linköping University, SE-581 83 Linköping, Sweden
| | - Jibao Lu
- Department
of Chemistry, The University of Utah, Salt Lake City, Utah 84112-0850, United States
| | - Yao Xu
- Lehrstuhl
Physikalische Chemie II, Ruhr-Universität
Bochum, 44801 Bochum, Germany
| | - Hedieh Torabifard
- Department
of Chemistry, Wayne State University, Detroit, Michigan 48202, United States
| | - Albert P. Bartók
- Engineering
Laboratory, University of Cambridge, Trumpington Street, Cambridge CB21PZ, United Kingdom
| | - Gábor Csányi
- Engineering
Laboratory, University of Cambridge, Trumpington Street, Cambridge CB21PZ, United Kingdom
| | - Valeria Molinero
- Department
of Chemistry, The University of Utah, Salt Lake City, Utah 84112-0850, United States
| | - Francesco Paesani
- Department
of Chemistry and Biochemistry, University
of California San Diego, La Jolla, California 92093, United States
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72
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Loboda O, Ingrosso F, Ruiz-López MF, Reis H, Millot C. Dipole and quadrupole polarizabilities of the water molecule as a function of geometry. J Comput Chem 2016; 37:2125-32. [DOI: 10.1002/jcc.24431] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2016] [Revised: 05/24/2016] [Accepted: 05/27/2016] [Indexed: 11/11/2022]
Affiliation(s)
- Oleksandr Loboda
- SRSMC UMR 7565, Faculté des Sciences et Technologies, Boulevard des Aiguillettes, BP 70239; Université de Lorraine, CNRS; Vandoeuvre-lès-Nancy F-54506 France
| | - Francesca Ingrosso
- SRSMC UMR 7565, Faculté des Sciences et Technologies, Boulevard des Aiguillettes, BP 70239; Université de Lorraine, CNRS; Vandoeuvre-lès-Nancy F-54506 France
| | - Manuel F. Ruiz-López
- SRSMC UMR 7565, Faculté des Sciences et Technologies, Boulevard des Aiguillettes, BP 70239; Université de Lorraine, CNRS; Vandoeuvre-lès-Nancy F-54506 France
| | - Heribert Reis
- Institute of Biology, Medicinal Chemistry and Biotechnology, National Hellenic Research Foundation; 48 Vas. Constantinou Avenue Athens 11635 Greece
| | - Claude Millot
- SRSMC UMR 7565, Faculté des Sciences et Technologies, Boulevard des Aiguillettes, BP 70239; Université de Lorraine, CNRS; Vandoeuvre-lès-Nancy F-54506 France
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73
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Striolo A, Michaelides A, Joly L. The Carbon-Water Interface: Modeling Challenges and Opportunities for the Water-Energy Nexus. Annu Rev Chem Biomol Eng 2016; 7:533-56. [DOI: 10.1146/annurev-chembioeng-080615-034455] [Citation(s) in RCA: 64] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
Providing clean water and sufficient affordable energy to all without compromising the environment is a key priority in the scientific community. Many recent studies have focused on carbon-based devices in the hope of addressing this grand challenge, justifying and motivating detailed studies of water in contact with carbonaceous materials. Such studies are becoming increasingly important because of the miniaturization of newly proposed devices, with ubiquitous nanopores, large surface-to-volume ratio, and many, perhaps most of the water molecules in contact with a carbon-based surface. In this brief review, we discuss some recent advances obtained via simulations and experiments in the development of carbon-based materials for applications in water desalination. We suggest possible ways forward, with particular emphasis on the synergistic combination of experiments and simulations, with simulations now sometimes offering sufficient accuracy to provide fundamental insights. We also point the interested reader to recent works that complement our short summary on the state of the art of this important and fascinating field.
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Affiliation(s)
- Alberto Striolo
- Department of Chemical Engineering, University College London, London WC1E 7JE, United Kingdom
| | - Angelos Michaelides
- Thomas Young Centre, London Centre for Nanotechnology, and Department of Physics and Astronomy, University College London, London WC1H 0AH, United Kingdom
| | - Laurent Joly
- Institut Lumière Matière, UMR5306 Université Lyon 1-CNRS, Université de Lyon, France
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74
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Björneholm O, Hansen MH, Hodgson A, Liu LM, Limmer DT, Michaelides A, Pedevilla P, Rossmeisl J, Shen H, Tocci G, Tyrode E, Walz MM, Werner J, Bluhm H. Water at Interfaces. Chem Rev 2016; 116:7698-726. [PMID: 27232062 DOI: 10.1021/acs.chemrev.6b00045] [Citation(s) in RCA: 357] [Impact Index Per Article: 44.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
The interfaces of neat water and aqueous solutions play a prominent role in many technological processes and in the environment. Examples of aqueous interfaces are ultrathin water films that cover most hydrophilic surfaces under ambient relative humidities, the liquid/solid interface which drives many electrochemical reactions, and the liquid/vapor interface, which governs the uptake and release of trace gases by the oceans and cloud droplets. In this article we review some of the recent experimental and theoretical advances in our knowledge of the properties of aqueous interfaces and discuss open questions and gaps in our understanding.
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Affiliation(s)
- Olle Björneholm
- Department of Physics and Astronomy, Uppsala University , Box 516, 751 20 Uppsala, Sweden
| | - Martin H Hansen
- Technical University of Denmark , 2800 Kongens Lyngby, Denmark.,Department of Chemistry, University of Copenhagen , Universitetsparken 5, 2100 Copenhagen, Denmark
| | - Andrew Hodgson
- Department of Chemistry, University of Liverpool , Liverpool L69 7ZD, United Kingdom
| | - Li-Min Liu
- Thomas Young Centre, London Centre for Nanotechnology, Department of Physics and Astronomy, and Department of Chemistry, University College London , London WC1E 6BT, United Kingdom.,Beijing Computational Science Research Center , Beijing, 100193, China
| | - David T Limmer
- Princeton Center for Theoretical Science, Princeton University , Princeton, New Jersey 08544, United States
| | - Angelos Michaelides
- Thomas Young Centre, London Centre for Nanotechnology, Department of Physics and Astronomy, and Department of Chemistry, University College London , London WC1E 6BT, United Kingdom
| | - Philipp Pedevilla
- Thomas Young Centre, London Centre for Nanotechnology, Department of Physics and Astronomy, and Department of Chemistry, University College London , London WC1E 6BT, United Kingdom
| | - Jan Rossmeisl
- Department of Chemistry, University of Copenhagen , Universitetsparken 5, 2100 Copenhagen, Denmark
| | - Huaze Shen
- International Center for Quantum Materials and School of Physics, Peking University , Beijing 100871, China
| | - Gabriele Tocci
- Thomas Young Centre, London Centre for Nanotechnology, Department of Physics and Astronomy, and Department of Chemistry, University College London , London WC1E 6BT, United Kingdom.,Laboratory for fundamental BioPhotonics, Laboratory of Computational Science and Modeling, Institutes of Bioengineering and Materials Science and Engineering, School of Engineering, and Lausanne Centre for Ultrafast Science, École Polytechnique Fédérale de Lausanne (EPFL) , CH-1015 Lausanne, Switzerland
| | - Eric Tyrode
- Department of Chemistry, KTH Royal Institute of Technology , 10044 Stockholm, Sweden
| | - Marie-Madeleine Walz
- Department of Physics and Astronomy, Uppsala University , Box 516, 751 20 Uppsala, Sweden
| | - Josephina Werner
- Department of Physics and Astronomy, Uppsala University , Box 516, 751 20 Uppsala, Sweden.,Department of Chemistry and Biotechnology, Swedish University of Agricultural Sciences , Box 7015, 750 07 Uppsala, Sweden
| | - Hendrik Bluhm
- Chemical Sciences Division, Lawrence Berkeley National Laboratory , Berkeley, California 94720, United States
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75
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Köster A, Spura T, Rutkai G, Kessler J, Wiebeler H, Vrabec J, Kühne TD. Assessing the accuracy of improved force-matched water models derived fromAb initiomolecular dynamics simulations. J Comput Chem 2016; 37:1828-38. [DOI: 10.1002/jcc.24398] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2015] [Revised: 04/08/2016] [Accepted: 04/14/2016] [Indexed: 11/10/2022]
Affiliation(s)
- Andreas Köster
- Thermodynamics and Energy Technology; Department of Mechanical Engineering, University of Paderborn; Warburger Str. 100 Paderborn D-33098 Germany
| | - Thomas Spura
- Dynamics of Condensed Matter, Department of Chemistry; University of Paderborn; Warburger Str. 100 Paderborn D-33098 Germany
| | - Gábor Rutkai
- Thermodynamics and Energy Technology; Department of Mechanical Engineering, University of Paderborn; Warburger Str. 100 Paderborn D-33098 Germany
| | - Jan Kessler
- Dynamics of Condensed Matter, Department of Chemistry; University of Paderborn; Warburger Str. 100 Paderborn D-33098 Germany
| | - Hendrik Wiebeler
- Dynamics of Condensed Matter, Department of Chemistry; University of Paderborn; Warburger Str. 100 Paderborn D-33098 Germany
| | - Jadran Vrabec
- Thermodynamics and Energy Technology; Department of Mechanical Engineering, University of Paderborn; Warburger Str. 100 Paderborn D-33098 Germany
| | - Thomas D. Kühne
- Dynamics of Condensed Matter, Department of Chemistry; University of Paderborn; Warburger Str. 100 Paderborn D-33098 Germany
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76
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Affiliation(s)
- David C Clary
- Department of Physical and Theoretical Chemistry, University of Oxford, Oxford OX1 3QZ, UK.
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77
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Richardson JO, Pérez C, Lobsiger S, Reid AA, Temelso B, Shields GC, Kisiel Z, Wales DJ, Pate BH, Althorpe SC. Concerted hydrogen-bond breaking by quantum tunneling in the water hexamer prism. Science 2016; 351:1310-3. [PMID: 26989250 DOI: 10.1126/science.aae0012] [Citation(s) in RCA: 187] [Impact Index Per Article: 23.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Abstract
The nature of the intermolecular forces between water molecules is the same in small hydrogen-bonded clusters as in the bulk. The rotational spectra of the clusters therefore give insight into the intermolecular forces present in liquid water and ice. The water hexamer is the smallest water cluster to support low-energy structures with branched three-dimensional hydrogen-bond networks, rather than cyclic two-dimensional topologies. Here we report measurements of splitting patterns in rotational transitions of the water hexamer prism, and we used quantum simulations to show that they result from geared and antigeared rotations of a pair of water molecules. Unlike previously reported tunneling motions in water clusters, the geared motion involves the concerted breaking of two hydrogen bonds. Similar types of motion may be feasible in interfacial and confined water.
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Affiliation(s)
- Jeremy O Richardson
- Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, UK. Department of Chemistry, Durham University, South Road Durham DH1 3LE, UK
| | - Cristóbal Pérez
- Department of Chemistry, University of Virginia, McCormick Road, Charlottesville, VA 22903, USA
| | - Simon Lobsiger
- Department of Chemistry, University of Virginia, McCormick Road, Charlottesville, VA 22903, USA
| | - Adam A Reid
- Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, UK
| | - Berhane Temelso
- Dean's Office, College of Arts and Sciences, and Department of Chemistry, Bucknell University, Lewisburg, PA 17837, USA
| | - George C Shields
- Dean's Office, College of Arts and Sciences, and Department of Chemistry, Bucknell University, Lewisburg, PA 17837, USA
| | - Zbigniew Kisiel
- Institute of Physics, Polish Academy of Sciences, Aleja Lotników 32/46, 02-668 Warszawa, Poland
| | - David J Wales
- Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, UK
| | - Brooks H Pate
- Department of Chemistry, University of Virginia, McCormick Road, Charlottesville, VA 22903, USA
| | - Stuart C Althorpe
- Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, UK
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78
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Gillan MJ, Alfè D, Michaelides A. Perspective: How good is DFT for water? J Chem Phys 2016; 144:130901. [DOI: 10.1063/1.4944633] [Citation(s) in RCA: 478] [Impact Index Per Article: 59.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022] Open
Affiliation(s)
- Michael J. Gillan
- London Centre for Nanotechnology, Gordon St., London WC1H 0AH, United Kingdom
- Thomas Young Centre, University College London, London WC1H 0AH, United Kingdom
- Department of Physics and Astronomy, University College London, London WC1E 6BT, United Kingdom
| | - Dario Alfè
- London Centre for Nanotechnology, Gordon St., London WC1H 0AH, United Kingdom
- Thomas Young Centre, University College London, London WC1H 0AH, United Kingdom
- Department of Physics and Astronomy, University College London, London WC1E 6BT, United Kingdom
- Department of Earth Sciences, University College London, London WC1E 6BT, United Kingdom
| | - Angelos Michaelides
- London Centre for Nanotechnology, Gordon St., London WC1H 0AH, United Kingdom
- Thomas Young Centre, University College London, London WC1H 0AH, United Kingdom
- Department of Physics and Astronomy, University College London, London WC1E 6BT, United Kingdom
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79
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Watanabe HC, Banno M, Sakurai M. An adaptive quantum mechanics/molecular mechanics method for the infrared spectrum of water: incorporation of the quantum effect between solute and solvent. Phys Chem Chem Phys 2016; 18:7318-33. [DOI: 10.1039/c5cp07136d] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Quantum effects in solute–solvent interactions, such as the many-body effect and the dipole-induced dipole, are known to be critical factors influencing the infrared spectra of species in the liquid phase.
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Affiliation(s)
- Hiroshi C. Watanabe
- Research Center for Advanced Science and Technology
- The University of Tokyo
- Meguro-ku
- Japan
| | - Misa Banno
- Center for Biological Resources and Informatics
- Tokyo Institute of Technology
- Midori-ku
- Japan
| | - Minoru Sakurai
- Center for Biological Resources and Informatics
- Tokyo Institute of Technology
- Midori-ku
- Japan
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80
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Terranova ZL, Paesani F. The effects of framework dynamics on the behavior of water adsorbed in the [Zn(l-L)(Cl)] and Co-MOF-74 metal–organic frameworks. Phys Chem Chem Phys 2016; 18:8196-204. [DOI: 10.1039/c5cp07681a] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Abstract
Density distributions of water molecules in the pores of the [Zn(l-L)(Cl)] metal–organic framework.
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Affiliation(s)
| | - Francesco Paesani
- Department of Chemistry and Biochemistry
- University of California
- La Jolla
- USA
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81
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Mallory JD, Mandelshtam VA. Binding energies from diffusion Monte Carlo for the MB-pol H2O and D2O dimer: A comparison to experimental values. J Chem Phys 2015; 143:144303. [DOI: 10.1063/1.4932596] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Joel D. Mallory
- Department of Chemistry, University of California, Irvine, 1102 Natural Sciences II, Irvine, California 92697, USA
| | - Vladimir A. Mandelshtam
- Department of Chemistry, University of California, Irvine, 1102 Natural Sciences II, Irvine, California 92697, USA
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82
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Desgranges C, Delhommelle J. Many-Body Effects on the Thermodynamics of Fluids, Mixtures, and Nanoconfined Fluids. J Chem Theory Comput 2015; 11:5401-14. [DOI: 10.1021/acs.jctc.5b00693] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Caroline Desgranges
- Department of Chemistry, University of North Dakota, Grand Forks, North Dakota 58202, United States
| | - Jerome Delhommelle
- Department of Chemistry, University of North Dakota, Grand Forks, North Dakota 58202, United States
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83
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Miliordos E, Xantheas SS. An accurate and efficient computational protocol for obtaining the complete basis set limits of the binding energies of water clusters at the MP2 and CCSD(T) levels of theory: Application to (H2O)m, m = 2-6, 8, 11, 16, and 17. J Chem Phys 2015; 142:234303. [DOI: 10.1063/1.4922262] [Citation(s) in RCA: 48] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Evangelos Miliordos
- Physical Sciences Division, Pacific Northwest National Laboratory, 902 Battelle Boulevard, P.O. Box 999, MS K1-83, Richland, Washington 99352, USA
| | - Sotiris S. Xantheas
- Physical Sciences Division, Pacific Northwest National Laboratory, 902 Battelle Boulevard, P.O. Box 999, MS K1-83, Richland, Washington 99352, USA
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84
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Burtch NC, Dubbeldam D, Walton KS. Investigating water and framework dynamics in pillared MOFs. MOLECULAR SIMULATION 2015. [DOI: 10.1080/08927022.2015.1030861] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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85
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König C, Christiansen O. Automatic determination of important mode–mode correlations in many-mode vibrational wave functions. J Chem Phys 2015; 142:144115. [DOI: 10.1063/1.4916518] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Carolin König
- Department of Chemistry, Aarhus University, DK-8000 Aarhus C, Denmark
| | - Ove Christiansen
- Department of Chemistry, Aarhus University, DK-8000 Aarhus C, Denmark
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86
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Tainter CJ, Shi L, Skinner JL. Reparametrized E3B (Explicit Three-Body) Water Model Using the TIP4P/2005 Model as a Reference. J Chem Theory Comput 2015; 11:2268-77. [DOI: 10.1021/acs.jctc.5b00117] [Citation(s) in RCA: 36] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Craig J. Tainter
- Theoretical Chemistry Institute
and Department of Chemistry, University of Wisconsin, Madison, Wisconsin 53706, United States
| | - Liang Shi
- Theoretical Chemistry Institute
and Department of Chemistry, University of Wisconsin, Madison, Wisconsin 53706, United States
| | - James L. Skinner
- Theoretical Chemistry Institute
and Department of Chemistry, University of Wisconsin, Madison, Wisconsin 53706, United States
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87
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Jankowski P, Murdachaew G, Bukowski R, Akin-Ojo O, Leforestier C, Szalewicz K. Ab initio water pair potential with flexible monomers. J Phys Chem A 2015; 119:2940-64. [PMID: 25687650 DOI: 10.1021/jp512847z] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
A potential energy surface for the water dimer with explicit dependence on monomer coordinates is presented. The surface was fitted to a set of previously published interaction energies computed on a grid of over a quarter million points in the 12-dimensional configurational space using symmetry-adapted perturbation theory and coupled-cluster methods. The present fit removes small errors in published fits, and its accuracy is critically evaluated. The minimum and saddle-point structures of the potential surface were found to be very close to predictions from direct ab initio optimizations. The computed second virial coefficients agreed well with experimental values. At low temperatures, the effects of monomer flexibility in the virial coefficients were found to be much smaller than the quantum effects.
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Affiliation(s)
- Piotr Jankowski
- †Department of Physics and Astronomy, University of Delaware, Newark, Delaware 19716, United States.,§Faculty of Chemistry, Nicolaus Copernicus University in Torun, Gagarina 7, 87-100 Torun, Poland
| | - Garold Murdachaew
- †Department of Physics and Astronomy, University of Delaware, Newark, Delaware 19716, United States
| | - Robert Bukowski
- †Department of Physics and Astronomy, University of Delaware, Newark, Delaware 19716, United States
| | - Omololu Akin-Ojo
- †Department of Physics and Astronomy, University of Delaware, Newark, Delaware 19716, United States
| | - Claude Leforestier
- ‡Institut Charles Gerhardt (CTMM)-UMR 5253, CC 15.01, Université Montpellier II-CNRS, Montpellier, Cedex 05, France 34095
| | - Krzysztof Szalewicz
- †Department of Physics and Astronomy, University of Delaware, Newark, Delaware 19716, United States
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88
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Medders GR, Paesani F. Infrared and Raman Spectroscopy of Liquid Water through "First-Principles" Many-Body Molecular Dynamics. J Chem Theory Comput 2015; 11:1145-54. [PMID: 26579763 DOI: 10.1021/ct501131j] [Citation(s) in RCA: 147] [Impact Index Per Article: 16.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
Vibrational spectroscopy is a powerful technique to probe the structure and dynamics of water. However, deriving an unambiguous molecular-level interpretation of the experimental spectral features remains a challenge due to the complexity of the underlying hydrogen-bonding network. In this contribution, we present an integrated theoretical and computational framework (named many-body molecular dynamics or MB-MD) that, by systematically removing uncertainties associated with existing approaches, enables a rigorous modeling of vibrational spectra of water from quantum dynamical simulations. Specifically, we extend approaches used to model the many-body expansion of interaction energies to develop many-body representations of the dipole moment and polarizability of water. The combination of these "first-principles" representations with centroid molecular dynamics simulations enables the simulation of infrared and Raman spectra of liquid water under ambient conditions that, without relying on any ad hoc parameters, are in good agreement with the corresponding experimental results. Importantly, since the many-body energy, dipole, and polarizability surfaces employed in the simulations are derived independently from accurate fits to correlated electronic structure data, MB-MD allows for a systematic analysis of the calculated spectra in terms of both electronic and dynamical contributions. The present analysis suggests that, while MB-MD correctly reproduces both the shifts and the shapes of the main spectroscopic features, an improved description of quantum dynamical effects possibly combined with a dissociable water potential may be necessary for a quantitative representation of the OH stretch band.
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Affiliation(s)
- Gregory R Medders
- Department of Chemistry and Biochemistry, University of California, San Diego , La Jolla, California 92037, United States
| | - Francesco Paesani
- Department of Chemistry and Biochemistry, University of California, San Diego , La Jolla, California 92037, United States
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89
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Simon A, Iftner C, Mascetti J, Spiegelman F. Water clusters in an argon matrix: infrared spectra from molecular dynamics simulations with a self-consistent charge density functional-based tight binding/force-field potential. J Phys Chem A 2015; 119:2449-67. [PMID: 25650885 DOI: 10.1021/jp508533k] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The present theoretical study aims at investigating the effects of an argon matrix on the structures, energetics, dynamics, and infrared (IR) spectra of small water clusters (H2O)n (n = 1-6). The potential energy surface is obtained from a hybrid self-consistent charge density functional-based tight binding/force-field approach (SCC-DFTB/FF) in which the water clusters are treated at the SCC-DFTB level and the matrix is modeled at the FF level by a cluster consisting of ∼340 Ar atoms with a face centered cubic (fcc) structure, namely (H2O)n/Ar. With respect to a pure FF scheme, this allows a quantum description of the molecular system embedded in the matrix, along with all-atom geometry optimization and molecular dynamics (MD) simulations of the (H2O)n/Ar system. Finite-temperature IR spectra are derived from the MD simulations. The SCC-DFTB/FF scheme is first benchmarked on (H2O)Arn clusters against correlated wave function results and DFT calculations performed in the present work, and against FF data available in the literature. Regarding (H2O)n/Ar systems, the geometries of the water clusters are found to adapt to the fcc environment, possibly leading to intermolecular distortion and matrix perturbation. Several energetical quantities are estimated to characterize the water clusters in the matrix. In the particular case of the water hexamer, substitution and insertion energies for the prism, bag, and cage are found to be lower than that for the 6-member ring isomer. Finite-temperature MD simulations show that the water monomer has a quasifree rotation motion at 13 K, in agreement with experimental data. In the case of the water dimer, the only large-amplitude motion is a distortion-rotation intermolecular motion, whereas only vibration motions around the nuclei equilibrium positions are observed for clusters with larger sizes. Regarding the IR spectra, we find that the matrix environment leads to redshifts of the stretching modes and almost no shift of the bending modes. This is in agreement with experimental data. Furthermore, in the case of the water monomer and dimer, the magnitudes of the computed shifts are in fair agreement with the experimental values. The complex case of the water hexamer, which presents several low-energy isomers, is discussed.
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Affiliation(s)
- Aude Simon
- †Laboratoire de Chimie et Physique Quantiques LCPQ/IRSAMC, Université de Toulouse (UPS) and CNRS, 118 Route de Narbonne, F-31062 Toulouse, France
| | - Christophe Iftner
- †Laboratoire de Chimie et Physique Quantiques LCPQ/IRSAMC, Université de Toulouse (UPS) and CNRS, 118 Route de Narbonne, F-31062 Toulouse, France
| | - Joëlle Mascetti
- ‡Institut des Sciences Moléculaires, Université de Bordeaux and CNRS, 351 Cours de la Libération, 33405 Talence cedex, France
| | - Fernand Spiegelman
- †Laboratoire de Chimie et Physique Quantiques LCPQ/IRSAMC, Université de Toulouse (UPS) and CNRS, 118 Route de Narbonne, F-31062 Toulouse, France
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90
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91
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Soper AK. Disordered Atom Molecular Potential for Water Parameterized against Neutron Diffraction Data. Application to the Structure of Ice Ih. J Phys Chem B 2014; 119:9244-53. [DOI: 10.1021/jp509909w] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Alan K. Soper
- ISIS Facility, Rutherford Appleton Laboratory, Harwell Science and Innovation Campus, Didcot, Oxfordshire OX11 0QX, U.K
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92
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Howard JC, Gray JL, Hardwick AJ, Nguyen LT, Tschumper GS. Getting down to the Fundamentals of Hydrogen Bonding: Anharmonic Vibrational Frequencies of (HF)2 and (H2O)2 from Ab Initio Electronic Structure Computations. J Chem Theory Comput 2014; 10:5426-35. [DOI: 10.1021/ct500860v] [Citation(s) in RCA: 53] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- J. Coleman Howard
- Department of Chemistry and
Biochemistry, University of Mississippi, University, Mississippi 38677-1848 United States
| | - Jessica L. Gray
- Department of Chemistry and
Biochemistry, University of Mississippi, University, Mississippi 38677-1848 United States
| | - Amanda J. Hardwick
- Department of Chemistry and
Biochemistry, University of Mississippi, University, Mississippi 38677-1848 United States
| | - Linh T. Nguyen
- Department of Chemistry and
Biochemistry, University of Mississippi, University, Mississippi 38677-1848 United States
| | - Gregory S. Tschumper
- Department of Chemistry and
Biochemistry, University of Mississippi, University, Mississippi 38677-1848 United States
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93
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Góra U, Cencek W, Podeszwa R, van der Avoird A, Szalewicz K. Predictions for water clusters from a first-principles two- and three-body force field. J Chem Phys 2014; 140:194101. [PMID: 24852524 DOI: 10.1063/1.4875097] [Citation(s) in RCA: 52] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
A new rigid-monomer three-body potential has been developed for water by fitting it to more than 70 thousand trimer interaction energies computed ab initio using coupled-cluster methods and augmented triple-zeta-quality basis sets. This potential was used together with a modified form of a previously developed two-body potential and with a polarization model of four- and higher-body interactions to predict the energetics of the water trimer, hexamer, and 24-mer. Despite using the rigid-monomer approximation, these predictions agree better with flexible-monomer benchmarks than published results obtained with flexible-monomer force fields. An unexpected finding of our work is that simple polarization models predict four-body interactions to within a few percent, whereas for three-body interactions these models are known to have errors on the order of 50%.
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Affiliation(s)
- Urszula Góra
- Institute of Chemistry, University of Silesia, Szkolna 9, 40-006 Katowice, Poland
| | - Wojciech Cencek
- Department of Physics and Astronomy, University of Delaware, Newark, Delaware 19716, USA
| | - Rafał Podeszwa
- Institute of Chemistry, University of Silesia, Szkolna 9, 40-006 Katowice, Poland
| | - Ad van der Avoird
- Theoretical Chemistry, Institute for Molecules and Materials, Radboud University Nijmegen, Heyendaalseweg 135, 6525 AJ Nijmegen, The Netherlands
| | - Krzysztof Szalewicz
- Department of Physics and Astronomy, University of Delaware, Newark, Delaware 19716, USA
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94
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Pérez C, Zaleski DP, Seifert NA, Temelso B, Shields GC, Kisiel Z, Pate BH. Hydrogen Bond Cooperativity and the Three-Dimensional Structures of Water Nonamers and Decamers. Angew Chem Int Ed Engl 2014. [DOI: 10.1002/ange.201407447] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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95
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Pérez C, Zaleski DP, Seifert NA, Temelso B, Shields GC, Kisiel Z, Pate BH. Hydrogen Bond Cooperativity and the Three-Dimensional Structures of Water Nonamers and Decamers. Angew Chem Int Ed Engl 2014; 53:14368-72. [DOI: 10.1002/anie.201407447] [Citation(s) in RCA: 87] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2014] [Revised: 09/11/2014] [Indexed: 11/10/2022]
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96
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Garberoglio G, Jankowski P, Szalewicz K, Harvey AH. Path-integral calculation of the second virial coefficient including intramolecular flexibility effects. J Chem Phys 2014; 141:044119. [DOI: 10.1063/1.4890440] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Affiliation(s)
- Giovanni Garberoglio
- Interdisciplinary Laboratory for Computational Science (LISC), FBK-CMM and University of Trento, via Sommarive 18, I-38123 Povo (TN), Italy
| | - Piotr Jankowski
- Department of Quantum Chemistry, Faculty of Chemistry, Nicolaus Copernicus University, Gagarina 7, PL-87-100 Toruń, Poland
| | - Krzysztof Szalewicz
- Department of Physics and Astronomy, University of Delaware, Newark, Delaware 19716, USA
| | - Allan H. Harvey
- Applied Chemicals and Materials Division, National Institute of Standards and Technology, 325 Broadway, Boulder, Colorado 80305-3337, USA
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97
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Medders GR, Babin V, Paesani F. Development of a “First-Principles” Water Potential with Flexible Monomers. III. Liquid Phase Properties. J Chem Theory Comput 2014; 10:2906-10. [DOI: 10.1021/ct5004115] [Citation(s) in RCA: 236] [Impact Index Per Article: 23.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Gregory R. Medders
- Department of Chemistry and
Biochemistry, University of California, San Diego, La Jolla, California 92093, United States
| | - Volodymyr Babin
- Department of Chemistry and
Biochemistry, University of California, San Diego, La Jolla, California 92093, United States
| | - Francesco Paesani
- Department of Chemistry and
Biochemistry, University of California, San Diego, La Jolla, California 92093, United States
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98
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Alfè D, Bartók AP, Csányi G, Gillan MJ. Analyzing the errors of DFT approximations for compressed water systems. J Chem Phys 2014; 141:014104. [DOI: 10.1063/1.4885440] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- D. Alfè
- Department of Earth Sciences, UCL, London WC1E 6BT, United Kingdom
- London Centre for Nanotechnology, UCL, London WC1H 0AH, United Kingdom
- Thomas Young Centre, UCL, London WC1H 0AH, United Kingdom
- Department of Physics and Astronomy, UCL, London WC1E 6BT, United Kingdom
| | - A. P. Bartók
- Department of Engineering, University of Cambridge, Cambridge CB2 1PZ, United Kingdom
| | - G. Csányi
- Department of Engineering, University of Cambridge, Cambridge CB2 1PZ, United Kingdom
| | - M. J. Gillan
- London Centre for Nanotechnology, UCL, London WC1H 0AH, United Kingdom
- Thomas Young Centre, UCL, London WC1H 0AH, United Kingdom
- Department of Physics and Astronomy, UCL, London WC1E 6BT, United Kingdom
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99
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Duke RE, Starovoytov ON, Piquemal JP, Cisneros GA. GEM*: A Molecular Electronic Density-Based Force Field for Molecular Dynamics Simulations. J Chem Theory Comput 2014; 10:1361-5. [PMID: 26580355 PMCID: PMC5207213 DOI: 10.1021/ct500050p] [Citation(s) in RCA: 60] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
GEM*, a force field that combines Coulomb and Exchange terms calculated with Hermite Gaussians with the polarization, bonded, and modified van der Waals terms from AMOEBA is presented. GEM* is tested on an initial water model fitted at the same level as AMOEBA. The integrals required for the evaluation of the intermolecular Coulomb interactions are efficiently evaluated by means of reciprocal space methods. The GEM* water model is tested by comparing energies and forces for a series of water oligomers and MD simulations. Timings for GEM* compared to AMOEBA are presented and discussed.
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Affiliation(s)
- Robert E. Duke
- Department of Chemistry, Wayne State University, Detroit, Michigan 48202, United States
| | - Oleg N. Starovoytov
- Department of Chemistry, Wayne State University, Detroit, Michigan 48202, United States
| | - Jean-Philip Piquemal
- Sorbonne Universités, UPMC Univ Paris 06, UMR 7616 Laboratoire de Chimie Théorique case courrier 137, 4 place Jussieu 75005, Paris, France
- CNRS, UMR 7616 Laboratoire de Chimie Théorique case courrier 137, 4 place Jussieu 75005, Paris, France
| | - G. Andrés Cisneros
- Department of Chemistry, Wayne State University, Detroit, Michigan 48202, United States
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100
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Babin V, Medders GR, Paesani F. Development of a “First Principles” Water Potential with Flexible Monomers. II: Trimer Potential Energy Surface, Third Virial Coefficient, and Small Clusters. J Chem Theory Comput 2014; 10:1599-607. [DOI: 10.1021/ct500079y] [Citation(s) in RCA: 239] [Impact Index Per Article: 23.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Volodymyr Babin
- Department of Chemistry and
Biochemistry, University of California, San Diego, La Jolla, California 92093, United States
| | - Gregory R. Medders
- Department of Chemistry and
Biochemistry, University of California, San Diego, La Jolla, California 92093, United States
| | - Francesco Paesani
- Department of Chemistry and
Biochemistry, University of California, San Diego, La Jolla, California 92093, United States
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