Molecular dynamics simulations of low-ordered alzheimer β-amyloid oligomers from dimer to hexamer on self-assembled monolayers

The toxicity of amyloid β oligomers

In this review, we elucidate the mechanisms of Aβ oligomer toxicity which may contribute to Alzheimer's disease (AD). In particular, we discuss on the interaction of Aβ oligomers with the membrane through the process of adsorption and insertion. Such interaction gives rises to phase transitions in the sub-structures of the Aβ peptide from α-helical to β-sheet structure. By means of a coarse-grained model, we exhibit the tendency of β-sheet structures to aggregate, thus providing further insights to the process of membrane induced aggregation. We show that the aggregated oligomer causes membrane invagination, which is a precursor to the formation of pore structures and ion channels. Other pathological progressions to AD due to Aβ oligomers are also covered, such as their interaction with the membrane receptors, and their direct versus indirect effects on oxidative stress and intraneuronal accumulation. We further illustrate that the molecule curcumin is a potential Aβ toxicity inhibitor as a β-sheet breaker by having a high propensity to interact with certain Aβ residues without binding to them. The comprehensive understanding gained from these current researches on the various toxicity mechanisms show promises in the provision of better therapeutics and treatment strategies in the near future.

Pd(II)-mediated triad multilayers with zinc tetrapyridylporphyrin and pyridine-functionalized nano-TiO2 as linkers: assembly, characterization, and photocatalytic properties

Triad hybrid multilayers containing the light sensitizers of zinc tetrapyridylporphyrin (ZnTPyP) and pyridine-functionalized TiO(2) (TiO(2)-Py) nanoparticles were constructed on substrate surfaces with the use of Pd(II) ions as the connectors using the layer-by-layer (LBL) method. The assembly process was monitored using ultraviolet-visible (UV-vis) absorption and X-ray photoelectron spectra as well as scanning electron microscopy and atomic force microscopy. The content of the pyridine substituents in the TiO(2)-Py nanocomposites was about 2% (w/w). The Soret absorption band of ZnTPyP was 24 nm red-shifted in the hybrid multilayers due to a strong intermolecular electronic coupling interaction among porphyrin macrocycles or porphyrin macrocycle/TiO(2)-Py nanoparticles. The average surface density of each ZnTPyP layer was about 1.4 × 10(-10) mol/cm(2). Aggregation of the small TiO(2)-Py nanoparticles to larger domains with sizes up to hundreds of nanometers occurred in the hybrid multilayers; however, such an aggregation behavior was weaker than that in the solutions. The quartz substrate modified with the as-prepared Pd/ZnTPyP/Pd/TiO(2)-Py triad hybrid multilayers was used as a heterogeneous photocatalyst for the degradation of methyl orange (MO) under irradiation (λ > 420 nm) at room temperature with a catalytic efficiency of about 1.3 × 10(-3) MO/ZnTPyP·s. Without the use of the filter, the catalytic efficiency increased because both ZnTPyP and TiO(2)-Py nanocomposites acted as the light sensitizers. It is suggested that the present heterogeneous catalyst has the advantages of facile separation, high stability, structural controllability on the molecular and nanoscale level, and good recyclability.

Structure, orientation, and surface interaction of Alzheimer amyloid-β peptides on the graphite

The misfolding and aggregation of amyloid-β (Aβ) peptides into amyloid fibrils in solution and on the cell membrane has been linked to the pathogenesis of Alzheimer's disease. Although it is well-known that the presence of different surfaces can accelerate the aggregation of Aβ peptides into fibrils, surface-induced conformation, orientation, aggregation, and adsorption of Aβ peptides have not been well understood at the atomic level. Here, we perform all-atom explicit-water molecular dynamics (MD) simulations to study the orientation change, conformational dynamics, surface interaction of small Aβ aggregates with different sizes (monomer to tetramer), and conformations (α-helix and β-hairpin) upon adsorption on the graphite surface, in comparison with Aβ structures in bulk solution. Simulation results show that hydrophobic graphite induces the quick adsorption of Aβ peptides regardless of their initial conformations and sizes. Upon the adsorption, Aβ prefers to adopt random structure for monomers and to remain β-rich-structure for small oligomers, but not helical structures. More importantly, due to the amphiphilic sequence of Aβ and the hydrophobic nature of graphite, hydrophobic C-terminal residues of higher-order Aβ oligomers appear to have preferential interactions with the graphite surface for facilitating Aβ fibril formation and fibril growth. In combination of atomic force microscopy (AFM) images and MD simulation results, a postulated mechanism is proposed to describe the structure and kinetics of Aβ aggregation from aqueous solution to the graphite surface, providing parallel insights into Aβ aggregation on biological cell membranes.