51
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Dai J, Li W, Gong B, Wang H, Xia M, Yang K. Measurement of the light scattering of single micrometer-sized particles captured with a microfluidic trap. OPTICS EXPRESS 2015; 23:30204-30215. [PMID: 26698501 DOI: 10.1364/oe.23.030204] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
Light scattering detection of a single particle is significant to both theoretical developments and application progresses of particle scattering. In this work, a new method employing the polydimethylsiloxane microfluidic catcher with self-regulation was developed to detect the light scattering of an individual micro particle (20.42, 23.75, and 31.10 μm) in a wide angular range. This system can rapidly (<2 min) immobilize single particles without aggregations and continuously analyze its light scattering ranging from 2° to 162°. The high success ratio of the capture, good agreement with the anticipation, and moderate time and cost make this method a promising candidate in single-particle-scattering applications.
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52
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Kurth F, Franco-Obregón A, Bärtschi CA, Dittrich PS. An adaptable stage perfusion incubator for the controlled cultivation of C2C12 myoblasts. Analyst 2015; 140:127-33. [PMID: 25368875 DOI: 10.1039/c4an01758g] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Abstract
Here we present a stage perfusion incubation system that allows for the cultivation of mammalian cells within PDMS microfluidic devices for long-term microscopic examination and analysis. The custom-built stage perfusion incubator is adaptable to any x-y microscope stage and is enabled for temperature, gas and humidity control as well as equipped with chip and tubing holder. The applied double-layered microfluidic chip allows the predetermined positioning and concentration of cells while the gas permeable PDMS material facilitates pH control via CO2 levels throughout the chip. We demonstrate the functionality of this system by culturing C2C12 murine myoblasts in buffer free medium within its confines for up to 26 hours. We moreover demonstrated the system's compatibility with various chip configurations, other cells lines (HEK-293 cells) and for longer-term culturing. The cost-efficient system are applicable for any type of PDMS-based cell culture system. Detailed technical drawings and specification to reproduce this perfusion incubation system is provided in the ESI.
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Affiliation(s)
- Felix Kurth
- ETH Zurich, Department of Chemistry and Applied Biosciences, Department of Biosystems Science and Engineering, Vladimir-Prelog-Weg 3, 8093 Zürich, Switzerland.
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53
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Dittrich P, Ibáñez AJ. Analysis of metabolites in single cells-what is the best micro-platform? Electrophoresis 2015; 36:2196-2206. [PMID: 25929796 DOI: 10.1002/elps.201500045] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2015] [Revised: 04/04/2015] [Accepted: 04/04/2015] [Indexed: 11/11/2022]
Abstract
This review covers new innovations and developments in the field of single-cell level analysis of metabolites, involving the role of microfluidic and microarray platforms to manipulate and handle the cells prior their detection. Microfluidic and microarray platforms have shown great promise. The latest developments demonstrate their potential to identify a particular cell or even an ensemble of cells (sharing a common property or phenotype) that co-exist in a much larger cell population. The reason for this is the capability of these platforms to perform several complex analytical processes, such as: cleanup, sorting, derivatization, separation, and detection, with great robustness, speed, and reduced sample/reagent consumption. Here, we present several examples that illustrate the rapid strides that have been made for the routine analysis of metabolites by coupling different microfluidics and microarrays devices to a wide range of analytical detectors (e.g. fluorescent microscopy, electrochemical, and mass spectrometry). Herein, we also present selected examples detailing the use of microfluidics and microarrays in the visualization of the natural occurring cell-to-cell heterogeneity in isogenic populations, in particular during the response to external cues. The possibility to accurate monitor the cell-to-cell heterogeneity based on different levels of key metabolites is of clinical relevance, since cell-to-cell heterogeneity can influence, for example, the outcome of a drug treatment.
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Affiliation(s)
- Petra Dittrich
- ETH Zurich - Chemie und Angewandte Biowissenschaften, Wolfgang-Pauli-Str. 10, Zurich, 8093, Switzerland
| | - Alfredo J Ibáñez
- ETH Zurich - Department of Chemistry and Applied Biosciences, Vladimir-Prelog-weg 3, Zurich, 8093, Switzerland
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54
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INO K. Microchemistry- and MEMS-based Integrated Electrochemical Devices for Bioassay Applications. ELECTROCHEMISTRY 2015. [DOI: 10.5796/electrochemistry.83.688] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Affiliation(s)
- Kosuke INO
- Graduate School of Environmental Studies, Tohoku University
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55
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Vasdekis AE, Stephanopoulos G. Review of methods to probe single cell metabolism and bioenergetics. Metab Eng 2015; 27:115-135. [PMID: 25448400 PMCID: PMC4399830 DOI: 10.1016/j.ymben.2014.09.007] [Citation(s) in RCA: 71] [Impact Index Per Article: 7.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2014] [Revised: 09/18/2014] [Accepted: 09/19/2014] [Indexed: 11/26/2022]
Abstract
Single cell investigations have enabled unexpected discoveries, such as the existence of biological noise and phenotypic switching in infection, metabolism and treatment. Herein, we review methods that enable such single cell investigations specific to metabolism and bioenergetics. Firstly, we discuss how to isolate and immobilize individuals from a cell suspension, including both permanent and reversible approaches. We also highlight specific advances in microbiology for its implications in metabolic engineering. Methods for probing single cell physiology and metabolism are subsequently reviewed. The primary focus therein is on dynamic and high-content profiling strategies based on label-free and fluorescence microspectroscopy and microscopy. Non-dynamic approaches, such as mass spectrometry and nuclear magnetic resonance, are also briefly discussed.
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Affiliation(s)
- Andreas E Vasdekis
- Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, PO Box 999, Richland, WA 99354, USA.
| | - Gregory Stephanopoulos
- Department of Chemical Engineering, Massachusetts Institute of Technology, Room 56-469, Cambridge, MA 02139, USA.
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56
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Stratz S, Eyer K, Kurth F, Dittrich PS. On-chip enzyme quantification of single Escherichia coli bacteria by immunoassay-based analysis. Anal Chem 2014; 86:12375-81. [PMID: 25409480 DOI: 10.1021/ac503766d] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Abstract
Individual bacteria of an isogenic population can differ significantly in their phenotypic characteristics. This cellular heterogeneity is thought to increase the adaptivity to environmental changes on a population level. Analytical methods for single-bacteria analyses are essential to reveal the different factors that may contribute to this cellular heterogeneity, among them the stochastic gene expression, cell cycle stages and cell aging. Although promising concepts for the analysis of single mammalian cells based on microsystems technology were recently developed, platforms suitable for proteomic analyses of microbial cells are by far more challenging. Here, we present a microfluidic device optimized for the analysis of single Escherichia coli bacteria. Individual bacteria are captured in a trap and isolated in a volume of only 155 pL. In combination with an immunoassay-based analysis of the cell lysate, the platform allowed the selective and sensitive analysis of intracellular enzymes. The limit of detection of the developed protocol was found to be 200 enzymes. Using this platform, we could investigate the levels of β-galactosidase in cells grown under different nutrient conditions. We successfully determined the enzyme copy numbers in cells cultured in defined medium (3517 ± 1578) and in complex medium (4710 ± 2643), and verified the down-regulation of expression in medium that contained only glucose as carbon source. The strong variations we found for individual bacteria confirm the phenotype heterogeneity. The capability to quantify proteins and other molecules in single bacterial lysates is encouraging to use the new analysis platform in future proteomics studies of isogenic bacteria populations.
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Affiliation(s)
- Simone Stratz
- Department of Chemistry and Applied Biosciences, ETH Zurich , CH-8093 Zürich, Switzerland
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57
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Cheow LF, Sarkar A, Kolitz S, Lauffenburger D, Han J. Detecting kinase activities from single cell lysate using concentration-enhanced mobility shift assay. Anal Chem 2014; 86:7455-62. [PMID: 25025773 PMCID: PMC4144746 DOI: 10.1021/ac502185v] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Abstract
Electrokinetic preconcentration coupled with mobility shift assays can give rise to very high detection sensitivities. We describe a microfluidic device that utilizes this principle to detect cellular kinase activities by simultaneously concentrating and separating substrate peptides with different phosphorylation states. This platform is capable of reliably measuring kinase activities of single adherent cells cultured in nanoliter volume microwells. We also describe a novel method utilizing spacer peptides that significantly increase separation resolution while maintaining high concentration factors in this device. Thus, multiplexed kinase measurements can be implemented with single cell sensitivity. Multiple kinase activity profiling from single cell lysate could potentially allow us to study heterogeneous activation of signaling pathways that can lead to multiple cell fates.
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Affiliation(s)
- Lih Feng Cheow
- Department of Electrical Engineering and Computer Science and ‡Department of Biological Engineering, Massachusetts Institute of Technology , Cambridge, Massachusetts 02139, United States
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58
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Park S, Bassat DB, Yossifon G. Individually addressable multi-chamber electroporation platform with dielectrophoresis and alternating-current-electro-osmosis assisted cell positioning. BIOMICROFLUIDICS 2014; 8:024117. [PMID: 24803966 PMCID: PMC4000404 DOI: 10.1063/1.4873439] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/28/2014] [Accepted: 04/16/2014] [Indexed: 05/09/2023]
Abstract
A multi-functional microfluidic platform was fabricated to demonstrate the feasibility of on-chip electroporation integrated with dielectrophoresis (DEP) and alternating-current-electro-osmosis (ACEO) assisted cell/particle manipulation. A spatial gradient of electroporation parameters was generated within a microchamber array and validated using normal human dermal fibroblast (NHDF) cells and red fluorescent protein-expressing human umbilical vein endothelial cells (RFP-HUVECs) with various fluorescent indicators. The edge of the bottom electrode, coinciding with the microchamber entrance, may act as an on-demand gate, functioning under either positive or negative DEP. In addition, at sufficiently low activation frequencies, ACEO vortices can complement the DEP to contribute to a rapid trapping/alignment of particles. As such, results clearly indicate that the microfluidic platform has the potential to achieve high-throughput screening for electroporation with spatial control and uniformity, assisted by DEP and ACEO manipulation/trapping of particles/cells into individual microchambers.
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Affiliation(s)
- Sinwook Park
- Faculty of Mechanical Engineering, Micro- and Nanofluidics Laboratory, Technion-Israel Institute of Technology, Technion City 32000, Israel
| | - Dana Ben Bassat
- Faculty of Mechanical Engineering, Micro- and Nanofluidics Laboratory, Technion-Israel Institute of Technology, Technion City 32000, Israel
| | - Gilad Yossifon
- Faculty of Mechanical Engineering, Micro- and Nanofluidics Laboratory, Technion-Israel Institute of Technology, Technion City 32000, Israel
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59
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Schmidt FI, Kuhn P, Robinson T, Mercer J, Dittrich PS. Single-virus fusion experiments reveal proton influx into vaccinia virions and hemifusion lag times. Biophys J 2014; 105:420-31. [PMID: 23870263 DOI: 10.1016/j.bpj.2013.06.016] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2012] [Revised: 06/04/2013] [Accepted: 06/06/2013] [Indexed: 11/19/2022] Open
Abstract
Recent studies have revealed new insights into the endocytosis of vaccinia virus (VACV). However, the mechanism of fusion between viral and cellular membranes remains unknown. We developed a microfluidic device with a cell-trap array for immobilization of individual cells, with which we analyzed the acid-dependent fusion of single virions. VACV particles incorporating enhanced green fluorescent protein (EGFP) and labeled with self-quenching concentrations of R18 membrane dye were used in combination with total internal reflection fluorescence microscopy to measure the kinetics of R18 dequenching and thus single hemifusion events initiated by a fast low-pH trigger. These studies revealed unexpectedly long lag phases between pH change and hemifusion. In addition, we found that EGFP fluorescence in the virus was quenched upon acidification, indicating that protons could access the virus core, possibly through a proton channel. In a fraction of virus particles, EGFP fluorescence was recovered, presumably after fusion-pore formation and exposure of the core to the physiological pH of the host-cell cytosol. Given that virus-encoded cation channels play a crucial role in the life cycle of many viruses and can serve as antiviral drug targets, further investigations into a potential VACV viroporin are justified. Our findings indicate that the microfluidic device described may be highly beneficial to similar studies requiring fast kinetic measurements.
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Affiliation(s)
- Florian I Schmidt
- Institute of Biochemistry, Eidgenössische Technische Hochschule Zurich, Zurich, Switzerland
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60
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Yu J, Zhou J, Sutherland A, Wei W, Shin YS, Xue M, Heath JR. Microfluidics-based single-cell functional proteomics for fundamental and applied biomedical applications. ANNUAL REVIEW OF ANALYTICAL CHEMISTRY (PALO ALTO, CALIF.) 2014; 7:275-95. [PMID: 24896308 DOI: 10.1146/annurev-anchem-071213-020323] [Citation(s) in RCA: 52] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/07/2023]
Abstract
We review an emerging microfluidics-based toolkit for single-cell functional proteomics. Functional proteins include, but are not limited to, the secreted signaling proteins that can reflect the biological behaviors of immune cells or the intracellular phosphoproteins associated with growth factor-stimulated signaling networks. Advantages of the microfluidics platforms are multiple. First, 20 or more functional proteins may be assayed simultaneously from statistical numbers of single cells. Second, cell behaviors (e.g., motility) may be correlated with protein assays. Third, extensions to quantized cell populations can permit measurements of cell-cell interactions. Fourth, rare cells can be functionally identified and then separated for further analysis or culturing. Finally, certain assay types can provide a conduit between biology and the physicochemical laws. We discuss the history and challenges of the field then review design concepts and uses of the microchip platforms that have been reported, with an eye toward biomedical applications. We then look to the future of the field.
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Affiliation(s)
- Jing Yu
- Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California 91125;
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61
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62
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Gross A, Schöndube J, Niekrawitz S, Streule W, Riegger L, Zengerle R, Koltay P. Single-Cell Printer. ACTA ACUST UNITED AC 2013; 18:504-18. [DOI: 10.1177/2211068213497204] [Citation(s) in RCA: 78] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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63
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Haselgrübler T, Haider M, Ji B, Juhasz K, Sonnleitner A, Balogi Z, Hesse J. High-throughput, multiparameter analysis of single cells. Anal Bioanal Chem 2013; 406:3279-96. [PMID: 24292433 DOI: 10.1007/s00216-013-7485-x] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2013] [Revised: 11/04/2013] [Accepted: 11/04/2013] [Indexed: 12/23/2022]
Abstract
Heterogeneity of cell populations in various biological systems has been widely recognized, and the highly heterogeneous nature of cancer cells has been emerging with clinical relevance. Single-cell analysis using a combination of high-throughput and multiparameter approaches is capable of reflecting cell-to-cell variability, and at the same time of unraveling the complexity and interdependence of cellular processes in the individual cells of a heterogeneous population. In this review, analytical methods and microfluidic tools commonly used for high-throughput, multiparameter single-cell analysis of DNA, RNA, and proteins are discussed. Applications and limitations of currently available technologies for cancer research and diagnostics are reviewed in the light of the ultimate goal to establish clinically applicable assays.
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Affiliation(s)
- Thomas Haselgrübler
- Center for Advanced Bioanalysis GmbH, Gruberstraße 40-42, 4020, Linz, Austria,
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64
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Eyer K, Kuhn P, Stratz S, Dittrich PS. A microfluidic chip for the versatile chemical analysis of single cells. J Vis Exp 2013:e50618. [PMID: 24192501 DOI: 10.3791/50618] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023] Open
Abstract
We present a microfluidic device that enables the quantitative determination of intracellular biomolecules in multiple single cells in parallel. For this purpose, the cells are passively trapped in the middle of a microchamber. Upon activation of the control layer, the cell is isolated from the surrounding volume in a small chamber. The surrounding volume can then be exchanged without affecting the isolated cell. However, upon short opening and closing of the chamber, the solution in the chamber can be replaced within a few hundred milliseconds. Due to the reversibility of the chambers, the cells can be exposed to different solutions sequentially in a highly controllable fashion, e.g. for incubation, washing, and finally, cell lysis. The tightly sealed microchambers enable the retention of the lysate, minimize and control the dilution after cell lysis. Since lysis and analysis occur at the same location, high sensitivity is retained because no further dilution or loss of the analytes occurs during transport. The microchamber design therefore enables the reliable and reproducible analysis of very small copy numbers of intracellular molecules (attomoles, zeptomoles) released from individual cells. Furthermore, many microchambers can be arranged in an array format, allowing the analysis of many cells at once, given that suitable optical instruments are used for monitoring. We have already used the platform for proof-of-concept studies to analyze intracellular proteins, enzymes, cofactors and second messengers in either relative or absolute quantifiable manner.
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Affiliation(s)
- Klaus Eyer
- Department of Chemistry and Applied Biosciences, ETH Zurich, Switzerland
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65
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Lee DW, Doh I, Kim Y, Cho YH. Advanced combinational microfluidic multiplexer using multiple levels of control pressures. LAB ON A CHIP 2013; 13:3658-62. [PMID: 23896765 DOI: 10.1039/c3lc50513h] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
Abstract
We propose an advanced combinational microfluidic multiplexing method capable of increasing the number of addressable fluidic channels dramatically. Using only 4 control lines, the proposed advanced combinational multiplexer, utilizing two different levels of control pressure, could address up to 19 fluidic channels, which is at least two times larger than previous multiplexers. The difference between the maximum addressable channels in the present and previous methods increases dramatically when the control lines and control pressure levels increase. The present multiplexer, with its high control efficiency and simple structure for channel addressing, could be used in the application areas of integrated microfluidic systems such as high-throughput analyzers and dynamic pressure generators.
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Affiliation(s)
- Dong Woo Lee
- Korea Advanced Institute of Science and Technology (KAIST), Daejeon, Korea
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66
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Purkayastha N, Eyer K, Robinson T, Dittrich PS, Beck AK, Seebach D, Kolesinska B, Cadalbert R. Enantiomeric and Diastereoisomeric (Mixed)L/ D-Octaarginine Derivatives - A Simple Way of Modulating the Properties of Cell-Penetrating Peptides. Chem Biodivers 2013; 10:1165-84. [DOI: 10.1002/cbdv.201300180] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2013] [Indexed: 12/12/2022]
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67
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Quantitative microfluidic biomolecular analysis for systems biology and medicine. Anal Bioanal Chem 2013; 405:5743-58. [PMID: 23568613 DOI: 10.1007/s00216-013-6930-1] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2013] [Revised: 03/10/2013] [Accepted: 03/19/2013] [Indexed: 12/12/2022]
Abstract
In the postgenome era, biology and medicine are rapidly evolving towards quantitative and systems studies of complex biological systems. Emerging breakthroughs in microfluidic technologies and innovative applications are transforming systems biology by offering new capabilities to address the challenges in many areas, such as single-cell genomics, gene regulation networks, and pathology. In this review, we focus on recent progress in microfluidic technology from the perspective of its applications to promoting quantitative and systems biomolecular analysis in biology and medicine.
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68
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Nemes P, Rubakhin SS, Aerts JT, Sweedler JV. Qualitative and quantitative metabolomic investigation of single neurons by capillary electrophoresis electrospray ionization mass spectrometry. Nat Protoc 2013; 8:783-99. [PMID: 23538882 PMCID: PMC3655804 DOI: 10.1038/nprot.2013.035] [Citation(s) in RCA: 102] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
Abstract
Single-cell mass spectrometry (MS) empowers metabolomic investigations by decreasing analytical dimensions to the size of individual cells and subcellular structures. We describe a protocol for investigating and quantifying metabolites in individual isolated neurons using single-cell capillary electrophoresis (CE) coupled to electrospray ionization (ESI) time-of-flight (TOF) MS. The protocol requires ∼2 h for sample preparation, neuron isolation and metabolite extraction, and 1 h for metabolic measurement. We used the approach to detect more than 300 distinct compounds in the mass range of typical metabolites in various individual neurons (25-500 μm in diameter) isolated from the sea slug (Aplysia californica) central and rat (Rattus norvegicus) peripheral nervous systems. We found that a subset of identified compounds was sufficient to reveal metabolic differences among freshly isolated neurons of different types and changes in the metabolite profiles of cultured neurons. The protocol can be applied to the characterization of the metabolome in a variety of smaller cells and/or subcellular domains.
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Affiliation(s)
- Peter Nemes
- 1] Department of Chemistry and the Beckman Institute, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA. [2]
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69
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Faenza A, Bocchi M, Duqi E, Giulianelli L, Pecorari N, Rambelli L, Guerrieri R. High Yield Patterning of Single Cells from Extremely Small Populations. Anal Chem 2013; 85:3446-53. [DOI: 10.1021/ac400230d] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Affiliation(s)
- Andrea Faenza
- ARCES-University of Bologna, Via Toffano 2, 40125 Bologna, Italy
| | - Massimo Bocchi
- ARCES-University of Bologna, Via Toffano 2, 40125 Bologna, Italy
- MindSeeds Laboratories s.r.l., Via Fondazza 53, 40125 Bologna, Italy
| | - Enri Duqi
- ARCES-University of Bologna, Via Toffano 2, 40125 Bologna, Italy
| | - Luca Giulianelli
- ARCES-University of Bologna, Via Toffano 2, 40125 Bologna, Italy
| | - Nicola Pecorari
- ARCES-University of Bologna, Via Toffano 2, 40125 Bologna, Italy
| | - Laura Rambelli
- ARCES-University of Bologna, Via Toffano 2, 40125 Bologna, Italy
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70
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Eyer K, Stratz S, Kuhn P, Küster SK, Dittrich PS. Implementing Enzyme-Linked Immunosorbent Assays on a Microfluidic Chip To Quantify Intracellular Molecules in Single Cells. Anal Chem 2013; 85:3280-7. [DOI: 10.1021/ac303628j] [Citation(s) in RCA: 71] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Affiliation(s)
- K. Eyer
- Department of Chemistry and Applied Biosciences, ETH Zurich, Wolfgang-Pauli-Str. 10,
CH-8093 Zurich, Switzerland
| | - S. Stratz
- Department of Chemistry and Applied Biosciences, ETH Zurich, Wolfgang-Pauli-Str. 10,
CH-8093 Zurich, Switzerland
| | - P. Kuhn
- Department of Chemistry and Applied Biosciences, ETH Zurich, Wolfgang-Pauli-Str. 10,
CH-8093 Zurich, Switzerland
| | - S. K. Küster
- Department of Chemistry and Applied Biosciences, ETH Zurich, Wolfgang-Pauli-Str. 10,
CH-8093 Zurich, Switzerland
| | - P. S. Dittrich
- Department of Chemistry and Applied Biosciences, ETH Zurich, Wolfgang-Pauli-Str. 10,
CH-8093 Zurich, Switzerland
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71
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Kovarik ML, Ornoff DM, Melvin AT, Dobes NC, Wang Y, Dickinson AJ, Gach PC, Shah PK, Allbritton NL. Micro total analysis systems: fundamental advances and applications in the laboratory, clinic, and field. Anal Chem 2013; 85:451-72. [PMID: 23140554 PMCID: PMC3546124 DOI: 10.1021/ac3031543] [Citation(s) in RCA: 170] [Impact Index Per Article: 15.5] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Affiliation(s)
- Michelle L. Kovarik
- Department of Chemistry, University of North Carolina, Chapel Hill, North Carolina 27599
| | - Douglas M. Ornoff
- Department of Pharmacology, University of North Carolina, Chapel Hill, North Carolina 27599
| | - Adam T. Melvin
- Department of Chemistry, University of North Carolina, Chapel Hill, North Carolina 27599
| | - Nicholas C. Dobes
- Department of Chemistry, University of North Carolina, Chapel Hill, North Carolina 27599
| | - Yuli Wang
- Department of Chemistry, University of North Carolina, Chapel Hill, North Carolina 27599
| | - Alexandra J. Dickinson
- Department of Chemistry, University of North Carolina, Chapel Hill, North Carolina 27599
| | - Philip C. Gach
- Department of Chemistry, University of North Carolina, Chapel Hill, North Carolina 27599
| | - Pavak K. Shah
- Department of Biomedical Engineering, University of North Carolina, Chapel Hill, NC 27599 and North Carolina State University, Raleigh, NC 27695
| | - Nancy L. Allbritton
- Department of Chemistry, University of North Carolina, Chapel Hill, North Carolina 27599
- Department of Pharmacology, University of North Carolina, Chapel Hill, North Carolina 27599
- Department of Biomedical Engineering, University of North Carolina, Chapel Hill, NC 27599 and North Carolina State University, Raleigh, NC 27695
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72
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Robinson T, Kuhn P, Eyer K, Dittrich PS. Microfluidic trapping of giant unilamellar vesicles to study transport through a membrane pore. BIOMICROFLUIDICS 2013; 7:44105. [PMID: 24404039 PMCID: PMC3739824 DOI: 10.1063/1.4816712] [Citation(s) in RCA: 44] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/07/2013] [Accepted: 07/10/2013] [Indexed: 05/05/2023]
Abstract
We present a microfluidic platform able to trap single GUVs in parallel. GUVs are used as model membranes across many fields of biophysics including lipid rafts, membrane fusion, and nanotubes. While their creation is relatively facile, handling and addressing single vesicles remains challenging. The PDMS microchip used herein contains 60 chambers, each with posts able to passively capture single GUVs without compromising their integrity. The design allows for circular valves to be lowered from the channel ceiling to isolate the vesicles from rest of the channel network. GUVs containing calcein were trapped and by rapidly opening the valves, the membrane pore protein α-hemolysin (αHL) was introduced to the membrane. Confocal microscopy revealed the kinetics of the small molecule efflux for different protein concentrations. This microfluidic approach greatly improves the number of experiments possible and can be applied to a wide range of biophysical applications.
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Affiliation(s)
- T Robinson
- Department of Chemistry and Applied Biosciences, ETH Zurich, Zurich 8093, Switzerland
| | - P Kuhn
- Department of Chemistry and Applied Biosciences, ETH Zurich, Zurich 8093, Switzerland
| | - K Eyer
- Department of Chemistry and Applied Biosciences, ETH Zurich, Zurich 8093, Switzerland
| | - P S Dittrich
- Department of Chemistry and Applied Biosciences, ETH Zurich, Zurich 8093, Switzerland
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Trouillon R, Passarelli MK, Wang J, Kurczy ME, Ewing AG. Chemical Analysis of Single Cells. Anal Chem 2012; 85:522-42. [DOI: 10.1021/ac303290s] [Citation(s) in RCA: 152] [Impact Index Per Article: 12.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Affiliation(s)
- Raphaël Trouillon
- University of Gothenburg, Department of Chemistry and Molecular
Biology, 41296 Gothenburg, Sweden
| | - Melissa K. Passarelli
- University of Gothenburg, Department of Chemistry and Molecular
Biology, 41296 Gothenburg, Sweden
| | - Jun Wang
- University of Gothenburg, Department of Chemistry and Molecular
Biology, 41296 Gothenburg, Sweden
| | - Michael E. Kurczy
- Chalmers University, Department of Chemistry
and Biological Engineering, 41296 Gothenburg, Sweden
| | - Andrew G. Ewing
- University of Gothenburg, Department of Chemistry and Molecular
Biology, 41296 Gothenburg, Sweden
- Chalmers University, Department of Chemistry
and Biological Engineering, 41296 Gothenburg, Sweden
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Sen M, Ino K, Shiku H, Matsue T. Accumulation and detection of secreted proteins from single cells for reporter gene assays using a local redox cycling-based electrochemical (LRC-EC) chip device. LAB ON A CHIP 2012; 12:4328-4335. [PMID: 22941152 DOI: 10.1039/c2lc40674h] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
Abstract
A lab-on-a-chip device is described for the electrochemical detection of alkaline phosphatase (ALP) secreted by transformed single HeLa cells. Detection on the chip device is based on local redox cycling at 256 individually addressable sensor points. Ring-disk electrodes (generator/collector) are arranged at individual sensor points to amplify the signal due to redox-cycling with only 32 connector pads. The surface of each sensor point is modified with antibodies for secreted alkaline phosphatase (SEAP) immobilization, which facilitates separation and detection of SEAP. Separation of SEAP from HeLa cells enables elimination of endogenous ALP and prevents HeLa cells from damage due to exposure to high level pH used during electrochemical detection. The large number of sensor points enables the simultaneous analysis of a large amount of single cells using the chip. The system is useful for gene reporter assays and for the detection of several types of secreted proteins.
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Affiliation(s)
- Mustafa Sen
- Graduate School for Environmental Studies, Tohoku University, 6-6-11, Aramaki, Aoba, Sendai 980-8579, Japan
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