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Yin J, Zou Z, Yin F, Liang H, Hu Z, Fang W, Lv S, Zhang T, Wang B, Mu Y. A Self-Priming Digital Polymerase Chain Reaction Chip for Multiplex Genetic Analysis. ACS NANO 2020; 14:10385-10393. [PMID: 32794742 DOI: 10.1021/acsnano.0c04177] [Citation(s) in RCA: 38] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Digital PCR (polymerase chain reaction) is a powerful and attractive tool for the quantification of nucleic acids. However, the multiplex detection capabilities of this system are limited or require expensive instrumentation and reagents, all of which can hinder multiplex detection goals. Here, we propose strategies toward solving these issues regarding digital PCR. We designed and tested a self-priming digital PCR chip containing 6-plex detection capabilities using monochrome fluorescence, which has six detection areas and four-layer structures. This strategy achieved multiplex digital detection by the use of self-priming to preintroduce the specific reaction mix to a certain detection area. This avoids competition when multiple primer pairs coexist, allowing for multiplexing in a shorter time while using less reagents and low-cost instruments. This also prevents the digital PCR chip from experiencing long sample introduction time and evaporation. For further validation, this multiplex digital PCR chip was used to detect five types of EGFR (epidermal growth factor receptor) gene mutations in 15 blood samples from lung cancer patients. We conclude that this technique can precisely quantify EGFR mutations in high-performance diagnostics. This multiplex digital detection chip is a simple and inexpensive test intended for liquid biopsies. It can be applied and used in prenatal diagnostics, the monitoring of residual disease, rapid pathogen detection, and many other procedures.
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Affiliation(s)
- Juxin Yin
- Research Centre for Analytical Instrumentation, Institute of Cyber-Systems and Control, State Key Laboratory of Industrial Control Technology, Zhejiang University, Hangzhou, Zhejiang Province 310058, China
| | - Zheyu Zou
- College of Life Sciences, Zhejiang University, Hangzhou 310058, Zhejiang, China
| | - Fangfang Yin
- Weifang People's Hospital, Weifang 261000, China
| | - Hongxiao Liang
- Research Centre for Analytical Instrumentation, Institute of Cyber-Systems and Control, State Key Laboratory of Industrial Control Technology, Zhejiang University, Hangzhou, Zhejiang Province 310058, China
| | - Zhenming Hu
- Research Centre for Analytical Instrumentation, Institute of Cyber-Systems and Control, State Key Laboratory of Industrial Control Technology, Zhejiang University, Hangzhou, Zhejiang Province 310058, China
| | - Weibo Fang
- Research Centre for Analytical Instrumentation, Institute of Cyber-Systems and Control, State Key Laboratory of Industrial Control Technology, Zhejiang University, Hangzhou, Zhejiang Province 310058, China
| | - Shaowu Lv
- Key Laboratory for Molecular Enzymology and Engineering of the Ministry of Education, College of Life Science, Jilin University, Changchun 130000, China
| | - Tao Zhang
- Research Centre for Analytical Instrumentation, Institute of Cyber-Systems and Control, State Key Laboratory of Industrial Control Technology, Zhejiang University, Hangzhou, Zhejiang Province 310058, China
| | - Ben Wang
- Cancer Institute (Key Laboratory of Cancer Prevention and Intervention, National Ministry of Education), The Second Affiliated Hospital, School of Medicine, Zhejiang University, Hangzhou 310009, China
- Institute of Translational Medicine, Zhejiang University, Hangzhou 310029, China
| | - Ying Mu
- Research Centre for Analytical Instrumentation, Institute of Cyber-Systems and Control, State Key Laboratory of Industrial Control Technology, Zhejiang University, Hangzhou, Zhejiang Province 310058, China
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52
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Tarn MD, Sikora SNF, Porter GCE, Wyld BV, Alayof M, Reicher N, Harrison AD, Rudich Y, Shim JU, Murray BJ. On-chip analysis of atmospheric ice-nucleating particles in continuous flow. LAB ON A CHIP 2020; 20:2889-2910. [PMID: 32661539 DOI: 10.1039/d0lc00251h] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Ice-nucleating particles (INPs) are of atmospheric importance because they catalyse the freezing of supercooled cloud droplets, strongly affecting the lifetime and radiative properties of clouds. There is a need to improve our knowledge of the global distribution of INPs, their seasonal cycles and long-term trends, but our capability to make these measurements is limited. Atmospheric INP concentrations are often determined using assays involving arrays of droplets on a cold stage, but such assays are frequently limited by the number of droplets that can be analysed per experiment, often involve manual processing (e.g. pipetting of droplets), and can be susceptible to contamination. Here, we present a microfluidic platform, the LOC-NIPI (Lab-on-a-Chip Nucleation by Immersed Particle Instrument), for the generation of water-in-oil droplets and their freezing in continuous flow as they pass over a cold plate for atmospheric INP analysis. LOC-NIPI allows the user to define the number of droplets analysed by simply running the platform for as long as required. The use of small (∼100 μm diameter) droplets minimises the probability of contamination in any one droplet and therefore allows supercooling all the way down to homogeneous freezing (around -36 °C), while a temperature probe in a proxy channel provides an accurate measure of temperature without the need for temperature modelling. The platform was validated using samples of pollen extract and Snomax®, with hundreds of droplets analysed per temperature step and thousands of droplets being measured per experiment. Homogeneous freezing of purified water was studied using >10 000 droplets with temperature increments of 0.1 °C. The results were reproducible, independent of flow rate in the ranges tested, and the data compared well to conventional instrumentation and literature data. The LOC-NIPI was further benchmarked in a field campaign in the Eastern Mediterranean against other well-characterised instrumentation. The continuous flow nature of the system provides a route, with future development, to the automated monitoring of atmospheric INP at field sites around the globe.
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Affiliation(s)
- Mark D Tarn
- School of Earth and Environment, University of Leeds, Leeds, LS2 9JT, UK. and School of Physics and Astronomy, University of Leeds, Leeds, LS2 9JT, UK.
| | | | - Grace C E Porter
- School of Earth and Environment, University of Leeds, Leeds, LS2 9JT, UK. and School of Physics and Astronomy, University of Leeds, Leeds, LS2 9JT, UK.
| | - Bethany V Wyld
- School of Earth and Environment, University of Leeds, Leeds, LS2 9JT, UK.
| | - Matan Alayof
- Department of Earth and Planetary Sciences, Weizmann Institute of Science, Rehovot 76100, Israel
| | - Naama Reicher
- Department of Earth and Planetary Sciences, Weizmann Institute of Science, Rehovot 76100, Israel
| | | | - Yinon Rudich
- Department of Earth and Planetary Sciences, Weizmann Institute of Science, Rehovot 76100, Israel
| | - Jung-Uk Shim
- School of Physics and Astronomy, University of Leeds, Leeds, LS2 9JT, UK.
| | - Benjamin J Murray
- School of Earth and Environment, University of Leeds, Leeds, LS2 9JT, UK.
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53
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Azimi-Boulali J, Madadelahi M, Madou MJ, Martinez-Chapa SO. Droplet and Particle Generation on Centrifugal Microfluidic Platforms: A Review. MICROMACHINES 2020; 11:mi11060603. [PMID: 32580516 PMCID: PMC7344714 DOI: 10.3390/mi11060603] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/20/2020] [Revised: 06/17/2020] [Accepted: 06/18/2020] [Indexed: 01/09/2023]
Abstract
The use of multiphase flows in microfluidics to carry dispersed phase material (droplets, particles, bubbles, or fibers) has many applications. In this review paper, we focus on such flows on centrifugal microfluidic platforms and present different methods of dispersed phase material generation. These methods are classified into three specific categories, i.e., step emulsification, crossflow, and dispenser nozzle. Previous works on these topics are discussed and related parameters and specifications, including the size, material, production rate, and rotational speed are explicitly mentioned. In addition, the associated theories and important dimensionless numbers are presented. Finally, we discuss the commercialization of these devices and show a comparison to unveil the pros and cons of the different methods so that researchers can select the centrifugal droplet/particle generation method which better suits their needs.
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Affiliation(s)
- Javid Azimi-Boulali
- School of Engineering and Sciences, Tecnológico de Monterrey, Ave. Eugenio Garza Sada 2501, Monterrey 64849, NL, Mexico;
| | - Masoud Madadelahi
- School of Engineering and Sciences, Tecnológico de Monterrey, Ave. Eugenio Garza Sada 2501, Monterrey 64849, NL, Mexico;
- Correspondence: (M.M.); (S.O.M.-C.)
| | - Marc J. Madou
- Department of Mechanical and Aerospace Engineering, University of California Irvine, Irvine, CA 92697, USA;
| | - Sergio O. Martinez-Chapa
- School of Engineering and Sciences, Tecnológico de Monterrey, Ave. Eugenio Garza Sada 2501, Monterrey 64849, NL, Mexico;
- Correspondence: (M.M.); (S.O.M.-C.)
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54
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Li B, Li Y, Manz A, Wu W. Miniaturized Continuous-Flow Digital PCR for Clinical-Level Serum Sample Based on the 3D Microfluidics and CMOS Imaging Device. SENSORS 2020; 20:s20092492. [PMID: 32354074 PMCID: PMC7250024 DOI: 10.3390/s20092492] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/02/2020] [Revised: 04/13/2020] [Accepted: 04/20/2020] [Indexed: 12/19/2022]
Abstract
In recent years, the development of polymerase chain reaction (PCR) technology has focused on digital PCR, which depends on the microfluidics. Based on continuous-flow microfluidic technology, this paper designed a miniaturized digital PCR amplification system, and greatly reduced the area required for microdroplet generation and reaction. The core rod. made of polydimethylsiloxane (PDMS), was combined with the Teflon tube to form 3D microfluidics, which requires only one heating source to form the temperature difference required for gene amplification. Only two 34 g needles can form and transmit micro-droplets in a 4-fold tapered Teflon tube, which is the simplest method to generate digital PCR droplets as far as we know, which allows the microdroplet generation device to be free from dependence on expensive chips. A complementary metal oxide semiconductor (CMOS) camera was used as a detection tool to obtain fluorescence video for the entire loop area or a specified loop area. In addition, we developed a homebrew for automatic image acquisition and processing to realize the function of digital PCR. This technique realizes the analysis of clinical serum samples of hepatitis B virus (HBV) and obtained the same results as real-time quantitative PCR. This system has greatly reduced the size and cost of the entire system, while maintaining a stable response.
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Affiliation(s)
- Bin Li
- State Key Laboratory of Applied Optics, Changchun Institute of Optics, Fine Mechanics and Physics (CIOMP), Chinese Academy of Sciences, Changchun 130033, China
- University of Chinese Academy of Sciences (UCAS), Beijing 100049, China
| | - Yuanming Li
- State Key Laboratory of Applied Optics, Changchun Institute of Optics, Fine Mechanics and Physics (CIOMP), Chinese Academy of Sciences, Changchun 130033, China
| | - Andreas Manz
- Systems Engineering Department, Saarland University, 66123 Saarbrücken, Germany
- Bio Sensor & Materials Group, KIST Europe, 66123 Saarbrücken, Germany
| | - Wenming Wu
- State Key Laboratory of Applied Optics, Changchun Institute of Optics, Fine Mechanics and Physics (CIOMP), Chinese Academy of Sciences, Changchun 130033, China
- Correspondence:
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55
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Geng Z, Li S, Zhu L, Cheng Z, Jin M, Liu B, Guo Y, Liu P. “Sample-to-Answer” Detection of Rare ctDNA Mutation from 2 mL Plasma with a Fully Integrated DNA Extraction and Digital Droplet PCR Microdevice for Liquid Biopsy. Anal Chem 2020; 92:7240-7248. [DOI: 10.1021/acs.analchem.0c00818] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Affiliation(s)
- Zhi Geng
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing 100084, China
| | - Shanglin Li
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing 100084, China
| | - Lingxiang Zhu
- Human Genetic Resource Center, National Research Institute for Health and Family Planning, Beijing 100081, China
| | - Zhen Cheng
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing 100084, China
| | - Min Jin
- FengteBio Corporation, Beijing 100079, China
| | - Baoxia Liu
- TargetingOne Corporation, Beijing 100190, China
| | - Yong Guo
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing 100084, China
| | - Peng Liu
- Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing 100084, China
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56
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Madadelahi M, Acosta-Soto LF, Hosseini S, Martinez-Chapa SO, Madou MJ. Mathematical modeling and computational analysis of centrifugal microfluidic platforms: a review. LAB ON A CHIP 2020; 20:1318-1357. [PMID: 32242566 DOI: 10.1039/c9lc00775j] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/12/2023]
Abstract
Centrifugal microfluidic platforms or lab-on-discs (LODs) have evolved into a popular technology for automating chemical and biological assays. LODs today enable scientists to implement and integrate different operational units, including fluid mixing, droplet generation, cell-sorting, gene amplification, analyte detection, and so forth. For an efficient design and cost-effective implementation of any microfluidic device, including LODs, theoretical analysis and considerations should play a more important role than they currently do. The theoretical analysis we will show is especially essential to the investigation of detailed phenomena at the small length scales and high-speed typical for LODs where a wide range of forces may be involved. Previous LOD review papers presented mostly experimental results with theory as an afterthought. Hence, a review paper focused on the theoretical aspects, and associated computational studies of LOD devices is an urgent need. In the present review paper, all previous computational studies on LOD devices are categorized as single-phase flows, two-phase flows, network simulation, and solids. For each of these categories, the governing equations and important formulas are presented and explained. Moreover, a handy scaling analysis is introduced to aid scientists when comparing different competing forces in LOD devices. We hope that by surveying and contrasting various theoretical LOD studies, we shed some light on existing controversies and reveal where additional theoretical work is needed.
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Affiliation(s)
- Masoud Madadelahi
- School of Engineering and Sciences, Tecnologico de Monterrey, Ave. Eugenio Garza Sada 2501, Monterrey 64849, NL, Mexico.
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57
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Schulz M, Probst S, Calabrese S, R. Homann A, Borst N, Weiss M, von Stetten F, Zengerle R, Paust N. Versatile Tool for Droplet Generation in Standard Reaction Tubes by Centrifugal Step Emulsification. Molecules 2020; 25:molecules25081914. [PMID: 32326221 PMCID: PMC7221521 DOI: 10.3390/molecules25081914] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2020] [Revised: 04/08/2020] [Accepted: 04/17/2020] [Indexed: 12/22/2022] Open
Abstract
We present a versatile tool for the generation of monodisperse water-in-fluorinated-oil droplets in standard reaction tubes by centrifugal step emulsification. The microfluidic cartridge is designed as an insert into a standard 2 mL reaction tube and can be processed in standard laboratory centrifuges. It allows for droplet generation and subsequent transfer for any downstream analysis or further use, does not need any specialized device, and manufacturing is simple because it consists of two parts only: A structured substrate and a sealing foil. The design of the structured substrate is compatible to injection molding to allow manufacturing at large scale. Droplets are generated in fluorinated oil and collected in the reaction tube for subsequent analysis. For sample sizes up to 100 µL with a viscosity range of 1 mPa·s–4 mPa·s, we demonstrate stable droplet generation and transfer of more than 6 × 105 monodisperse droplets (droplet diameter 66 µm ± 3 µm, CV ≤ 4%) in less than 10 min. With two application examples, a digital droplet polymerase chain reaction (ddPCR) and digital droplet loop mediated isothermal amplification (ddLAMP), we demonstrate the compatibility of the droplet production for two main amplification techniques. Both applications show a high degree of linearity (ddPCR: R2 ≥ 0.994; ddLAMP: R2 ≥ 0.998), which demonstrates that the cartridge and the droplet generation method do not compromise assay performance.
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Affiliation(s)
- Martin Schulz
- Hahn-Schickard, Georges-Koehler-Allee 103, 79110 Freiburg, Germany
| | - Sophia Probst
- Hahn-Schickard, Georges-Koehler-Allee 103, 79110 Freiburg, Germany
| | - Silvia Calabrese
- Hahn-Schickard, Georges-Koehler-Allee 103, 79110 Freiburg, Germany
| | - Ana R. Homann
- Hahn-Schickard, Georges-Koehler-Allee 103, 79110 Freiburg, Germany
| | - Nadine Borst
- Hahn-Schickard, Georges-Koehler-Allee 103, 79110 Freiburg, Germany
- Laboratory for MEMS Applications, IMTEK—Department of Microsystems Engineering, University of Freiburg, Georges-Koehler-Allee 103, 79110 Freiburg, Germany
| | - Marian Weiss
- Hahn-Schickard, Georges-Koehler-Allee 103, 79110 Freiburg, Germany
| | - Felix von Stetten
- Hahn-Schickard, Georges-Koehler-Allee 103, 79110 Freiburg, Germany
- Laboratory for MEMS Applications, IMTEK—Department of Microsystems Engineering, University of Freiburg, Georges-Koehler-Allee 103, 79110 Freiburg, Germany
| | - Roland Zengerle
- Hahn-Schickard, Georges-Koehler-Allee 103, 79110 Freiburg, Germany
- Laboratory for MEMS Applications, IMTEK—Department of Microsystems Engineering, University of Freiburg, Georges-Koehler-Allee 103, 79110 Freiburg, Germany
| | - Nils Paust
- Hahn-Schickard, Georges-Koehler-Allee 103, 79110 Freiburg, Germany
- Laboratory for MEMS Applications, IMTEK—Department of Microsystems Engineering, University of Freiburg, Georges-Koehler-Allee 103, 79110 Freiburg, Germany
- Correspondence: ; Tel.: +49-761-203-73245
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58
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Peng H, Zhu M, Gao Z, Liao C, Jia C, Wang H, Zhou H, Zhao J. A centrifugal microfluidic emulsifier integrated with oil storage structures for robust digital LAMP. Biomed Microdevices 2020; 22:18. [DOI: 10.1007/s10544-020-0475-9] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
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59
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Cui X, Wu L, Wu Y, Zhang J, Zhao Q, Jing F, Yi L, Li G. Fast and robust sample self-digitization for digital PCR. Anal Chim Acta 2020; 1107:127-134. [PMID: 32200886 DOI: 10.1016/j.aca.2020.02.010] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2019] [Revised: 01/14/2020] [Accepted: 02/05/2020] [Indexed: 02/07/2023]
Abstract
We present a facile sample partitioning method to enable rapid and low-cost digital PCR (dPCR) assays. By subdividing a high percentage of the sample volume into a large number of equal volume compartments with a self-digitization (SD) chip, this method can achieve a low-waste and high-order sample discretization in a matter of minutes. The SD chip contains a set of parallel microfluidic channels used for sample delivery, and each channel is connected with two rows of cylindrical wells to hold the discretized sample. By utilizing a degassed PDMS sealing slab as a detachable vacuum pumping source, the SD chip automatically generate large arrays of small sample volumes without requirement of external pumping and valving components. Unlike most microfluidic chamber-based methods for sample discretization, our detachable SD chip allows for discretizing sample with air flushing, then peeling off the cover PDMS slab and sealing the digitized samples with oil layer. Due to obviation of time-consuming oil flushing, such microfluidic device can achieve much faster digitization of sample volumes. Furthermore, this digitization chip can partition more than 90% of a sample volume, which is important for the applications where the amount of material available is small. We also demonstrated the utility of the proposed SD chip by applying it to a dPCR assay.
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Affiliation(s)
- Xu Cui
- Key Laboratory of Optoelectronic Technology and Systems, Ministry of Education, Defense Key Disciplines Lab of Novel Micro-Nano Devices and System Technology, Chongqing University, Chongqing, 400044, China
| | - Lei Wu
- State Key Lab of Transducer Technology, Shanghai Institute of Microsystem and Information Technology, Chinese Academy of Sciences, Shanghai, 200050, China
| | - Yin Wu
- Key Laboratory of Optoelectronic Technology and Systems, Ministry of Education, Defense Key Disciplines Lab of Novel Micro-Nano Devices and System Technology, Chongqing University, Chongqing, 400044, China
| | - Jinghong Zhang
- Shanghai Turtle Technology Company Limited, Shanghai, 200439, China
| | - Qiang Zhao
- Key Laboratory of Optoelectronic Technology and Systems, Ministry of Education, Defense Key Disciplines Lab of Novel Micro-Nano Devices and System Technology, Chongqing University, Chongqing, 400044, China
| | - Fengxiang Jing
- Shanghai Turtle Technology Company Limited, Shanghai, 200439, China.
| | - Lin Yi
- Chongqing Key Laboratory of Translational Research for Cancer Metastasis and Individualized Treatment, Chongqing University Cancer Hospital, Chongqing, 400030, China
| | - Gang Li
- Key Laboratory of Optoelectronic Technology and Systems, Ministry of Education, Defense Key Disciplines Lab of Novel Micro-Nano Devices and System Technology, Chongqing University, Chongqing, 400044, China.
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60
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Kao YT, Kaminski TS, Postek W, Guzowski J, Makuch K, Ruszczak A, von Stetten F, Zengerle R, Garstecki P. Gravity-driven microfluidic assay for digital enumeration of bacteria and for antibiotic susceptibility testing. LAB ON A CHIP 2020; 20:54-63. [PMID: 31774415 DOI: 10.1039/c9lc00684b] [Citation(s) in RCA: 25] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
The alarming dynamics of antibiotic-resistant infections calls for the development of rapid and point-of-care (POC) antibiotic susceptibility testing (AST) methods. Here, we demonstrated the first completely stand-alone microfluidic system that allowed the execution of digital enumeration of bacteria and digital antibiograms without any specialized microfluidic instrumentation. A four-chamber gravity-driven step emulsification device generated ∼2000 monodisperse 2 nanoliter droplets with a coefficient of variation of 8.9% of volumes for 95% of droplets within less than 10 minutes. The manual workload required for droplet generation was limited to the sample preparation, the deposition into the sample inlet of the chip and subsequent orientation of the chip vertically without an additional pumping system. The use of shallow chambers imposing a 2D droplet arrangement provided superior stability of the droplets against coalescence and minimized the leakage of the reporter viability dye between adjacent droplets during long-term culture. By using resazurin as an indicator of the growth of bacteria, we were also able to reduce the assay time to ∼5 hours compared to 20 hours using the standard culture-based test.
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Affiliation(s)
- Yu-Ting Kao
- Institute of Physical Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warsaw, Poland. and Laboratory for MEMS Applications, IMTEK-Department of Microsystems Engineering, University of Freiburg, Georges-Koehler-Allee 103, 79110 Freiburg, Germany
| | - Tomasz S Kaminski
- Institute of Physical Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warsaw, Poland.
| | - Witold Postek
- Institute of Physical Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warsaw, Poland.
| | - Jan Guzowski
- Institute of Physical Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warsaw, Poland.
| | - Karol Makuch
- Institute of Physical Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warsaw, Poland.
| | - Artur Ruszczak
- Institute of Physical Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warsaw, Poland.
| | - Felix von Stetten
- Laboratory for MEMS Applications, IMTEK-Department of Microsystems Engineering, University of Freiburg, Georges-Koehler-Allee 103, 79110 Freiburg, Germany and Hahn-Schickard, Georges-Koehler-Allee 103, 79110, Freiburg, Germany
| | - Roland Zengerle
- Laboratory for MEMS Applications, IMTEK-Department of Microsystems Engineering, University of Freiburg, Georges-Koehler-Allee 103, 79110 Freiburg, Germany and Hahn-Schickard, Georges-Koehler-Allee 103, 79110, Freiburg, Germany
| | - Piotr Garstecki
- Institute of Physical Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warsaw, Poland.
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61
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Shi Z, Lai X, Sun C, Zhang X, Zhang L, Pu Z, Wang R, Yu H, Li D. Step emulsification in microfluidic droplet generation: mechanisms and structures. Chem Commun (Camb) 2020; 56:9056-9066. [DOI: 10.1039/d0cc03628e] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Abstract
Step emulsification for micro- and nano-droplet generation is reviewed in brief, including the emulsion mechanisms and microfluidic devices.
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Affiliation(s)
- Zhi Shi
- State Key Laboratory of Precision Measuring Technology and Instruments
- Tianjin University
- Tianjin
- China
| | - Xiaochen Lai
- State Key Laboratory of Precision Measuring Technology and Instruments
- Tianjin University
- Tianjin
- China
| | - Chengtao Sun
- State Key Laboratory of Precision Measuring Technology and Instruments
- Tianjin University
- Tianjin
- China
| | - Xingguo Zhang
- State Key Laboratory of Precision Measuring Technology and Instruments
- Tianjin University
- Tianjin
- China
| | - Lei Zhang
- State Key Laboratory of Precision Measuring Technology and Instruments
- Tianjin University
- Tianjin
- China
| | - Zhihua Pu
- State Key Laboratory of Precision Measuring Technology and Instruments
- Tianjin University
- Tianjin
- China
| | - Ridong Wang
- State Key Laboratory of Precision Measuring Technology and Instruments
- Tianjin University
- Tianjin
- China
| | - Haixia Yu
- Tianjin Key Laboratory of Biomedical Detecting Techniques and Instruments
- Tianjin University
- Tianjin
- China
| | - Dachao Li
- State Key Laboratory of Precision Measuring Technology and Instruments
- Tianjin University
- Tianjin
- China
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62
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Wang Y, Liu S, Zhang T, Cong H, Wei Y, Xu J, Ho YP, Kong SK, Ho HP. A centrifugal microfluidic pressure regulator scheme for continuous concentration control in droplet-based microreactors. LAB ON A CHIP 2019; 19:3870-3879. [PMID: 31638632 DOI: 10.1039/c9lc00631a] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Droplet microfluidics is an emerging tool in many biological and chemical application areas such as digital polymerase chain reaction (PCR) and in vitro diagnosis because of its extremely small sample volume and wide range of possibilities for on-demand adjustment of droplet properties. Although centrifugal microfluidics has been reported as a viable scheme for droplet generation, there is not much progress as far as droplet manipulation and droplet-based reactions are concerned. In this paper, we report a microfluidic pressure regulator scheme along with the use of microcapillaries for periodic droplet generation and the subsequent fusion. This scheme enables fine control over droplet generation and the fusion process by varying the rotational frequency. To control the solution concentration in droplets, we have implemented several fusion devices, including one-to-one mode using a symmetric structure and ratio-adjustable mode with an asymmetric structure. As an application example, we performed cell transfection using the reported droplet-based technique, which resulted in considerable improvement in terms of transfection efficiency compared to the traditional bulk approach. In another example, we synthesized quasi-2D perovskites with controllable compositions and tunable photoluminescence peaks, thus confirming the volumetric accuracy of this approach down to the nano-liter scale. Compared to the common pressure pulsation approach, our centrifugal force actuation scheme offers the advantages of compactness and highly parallel batch processing. We anticipate that the new scheme will find many applications in cell biology and chemical synthesis.
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Affiliation(s)
- Yuye Wang
- Department of Biomedical Engineering, The Chinese University of Hong Kong, Shatin, Hong Kong, China.
| | - Shiyue Liu
- School of Life Sciences, The Chinese University of Hong Kong, Shatin, Hong Kong, China
| | - Tiankai Zhang
- Department of Electronic Engineering, The Chinese University of Hong Kong, Shatin, Hong Kong, China
| | - Hengji Cong
- Department of Biomedical Engineering, The Chinese University of Hong Kong, Shatin, Hong Kong, China.
| | - Yuanyuan Wei
- Department of Biomedical Engineering, The Chinese University of Hong Kong, Shatin, Hong Kong, China.
| | - Jianbin Xu
- Department of Electronic Engineering, The Chinese University of Hong Kong, Shatin, Hong Kong, China
| | - Yi-Ping Ho
- Department of Biomedical Engineering, The Chinese University of Hong Kong, Shatin, Hong Kong, China.
| | - Siu-Kai Kong
- School of Life Sciences, The Chinese University of Hong Kong, Shatin, Hong Kong, China
| | - Ho-Pui Ho
- Department of Biomedical Engineering, The Chinese University of Hong Kong, Shatin, Hong Kong, China.
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Grösche M, Zoheir AE, Stegmaier J, Mikut R, Mager D, Korvink JG, Rabe KS, Niemeyer CM. Microfluidic Chips for Life Sciences-A Comparison of Low Entry Manufacturing Technologies. SMALL (WEINHEIM AN DER BERGSTRASSE, GERMANY) 2019; 15:e1901956. [PMID: 31305015 DOI: 10.1002/smll.201901956] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/18/2019] [Revised: 06/12/2019] [Indexed: 06/10/2023]
Abstract
Microfluidic water-in-oil droplets are a versatile tool for biological and biochemical applications due to the advantages of extremely small monodisperse reaction vessels in the pL-nL range. A key factor for the successful dissemination of this technology to life science laboratory users is the ability to produce microfluidic droplet generators and related accessories by low-entry barrier methods, which enable rapid prototyping and manufacturing of devices with low instrument and material costs. The direct, experimental side-by-side comparison of three commonly used additive manufacturing (AM) methods, namely fused deposition modeling (FDM), inkjet printing (InkJ), and stereolithography (SLA), is reported. As a benchmark, micromilling (MM) is used as an established method. To demonstrate which of these methods can be easily applied by the non-expert to realize applications in topical fields of biochemistry and microbiology, the methods are evaluated with regard to their limits for the minimum structure resolution in all three spatial directions. The suitability of functional SLA and MM chips to replace classic SU-8 prototypes is demonstrated on the basis of representative application cases.
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Affiliation(s)
- Maximilian Grösche
- Karlsruhe Institute of Technology (KIT), Institute for Biological Interfaces (IBG 1), Hermann-von-Helmholtz-Platz 1, D-76344, Eggenstein-Leopoldshafen, Germany
| | - Ahmed E Zoheir
- Karlsruhe Institute of Technology (KIT), Institute for Biological Interfaces (IBG 1), Hermann-von-Helmholtz-Platz 1, D-76344, Eggenstein-Leopoldshafen, Germany
| | - Johannes Stegmaier
- RWTH Aachen University, Institute of Imaging and Computer Vision, Kopernikusstraße 16, 52074, Aachen, Germany
| | - Ralf Mikut
- Karlsruhe Institute of Technology (KIT), Institute for Automation and Applied Informatics (IAI), Hermann-von-Helmholtz-Platz 1, D-76344, Eggenstein-Leopoldshafen, Germany
| | - Dario Mager
- Karlsruhe Institute of Technology (KIT), Institute of Microstructure Technology (IMT), Hermann-von-Helmholtz-Platz 1, D-76344, Eggenstein-Leopoldshafen, Germany
| | - Jan G Korvink
- Karlsruhe Institute of Technology (KIT), Institute of Microstructure Technology (IMT), Hermann-von-Helmholtz-Platz 1, D-76344, Eggenstein-Leopoldshafen, Germany
| | - Kersten S Rabe
- Karlsruhe Institute of Technology (KIT), Institute for Biological Interfaces (IBG 1), Hermann-von-Helmholtz-Platz 1, D-76344, Eggenstein-Leopoldshafen, Germany
| | - Christof M Niemeyer
- Karlsruhe Institute of Technology (KIT), Institute for Biological Interfaces (IBG 1), Hermann-von-Helmholtz-Platz 1, D-76344, Eggenstein-Leopoldshafen, Germany
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64
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Zhu X, Liu B, Su S, Wang B, Bai Y, Huang H, Liu X, Cheng X, Wang X, Zhu L, Yang W, Gao N, Jing G, Guo Y. A "quasi" confocal droplet reader based on laser-induced fluorescence (LIF) cytometry for highly-sensitive and contamination-free detection. Talanta 2019; 206:120200. [PMID: 31514845 DOI: 10.1016/j.talanta.2019.120200] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2019] [Revised: 07/29/2019] [Accepted: 07/30/2019] [Indexed: 01/23/2023]
Abstract
Highly-sensitive and contamination-free droplet digital PCR (ddPCR) is an enabling technology and widely needed for accurate quantification of nucleic acid in clinical applications. In this paper, a novel droplet reader was developed by combining a "quasi" confocal laser-induced fluorescence (LIF) cytometry with a delicate microfluidic chip design. The droplets with a size of 90 μm was illuminated at an out-of-focus position by two aligned laser beams to generate maximum fluorescent signal. Additionally, the lateral offset position of the microfluidic chip should be precisely tuned so that the bandwidth of the FAM and VIC channels were configured at the matching sizes. Then, PMT gain voltages and pneumatic pressures were optimized for better droplet detection efficiencies. An aerosol adsorption experiment was performed to demonstrate that there was no aerosol contamination, and detected copy numbers of both mutants and wild types scaled linearly with the expected input copy numbers (r2>0.998) with a LoB of 0.0 copies and LoD of 3.0 copies. The results demonstrated that this droplet reader with the delicate chip is a convenient, highly-sensitive and contamination-free to detect fluorescence signals inside droplets after ddPCR, which is highly promising for broad applications of ddPCR in clinical diagnosis.
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Affiliation(s)
- Xiurui Zhu
- Department of Biomedical Engineering, School of Medicine, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, Tsinghua University, Beijing, China
| | - Baoxia Liu
- TargetingOne Corporation, Beijing, China
| | - Shisheng Su
- Department of Biomedical Engineering, School of Medicine, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, Tsinghua University, Beijing, China
| | - Bo Wang
- TargetingOne Corporation, Beijing, China
| | - Yu Bai
- TargetingOne Corporation, Beijing, China
| | | | | | - Xin Cheng
- TargetingOne Corporation, Beijing, China
| | | | - Lingxiang Zhu
- TargetingOne Corporation, Beijing, China; National Research Institute for Family Planning, Beijing, China
| | - Wenjun Yang
- Department of Biomedical Engineering, School of Medicine, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, Tsinghua University, Beijing, China; TargetingOne Corporation, Beijing, China
| | - Na Gao
- TargetingOne Corporation, Beijing, China
| | - Gaoshan Jing
- Department of Precision Instrument, School of Mechanical Engineering, State Key Laboratory of Precision Measurement Technology and Instruments, Tsinghua University, Beijing, China.
| | - Yong Guo
- Department of Biomedical Engineering, School of Medicine, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, Tsinghua University, Beijing, China.
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65
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Schulz M, von Stetten F, Zengerle R, Paust N. Centrifugal Step Emulsification: How Buoyancy Enables High Generation Rates of Monodisperse Droplets. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2019; 35:9809-9815. [PMID: 31283246 DOI: 10.1021/acs.langmuir.9b01165] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
We demonstrate that buoyancy in centrifugal step emulsification enables substantially higher generation rates of monodisperse droplets compared to pressure driven set-ups. Step emulsification in general can produce droplets in comparatively simple systems (only one moving liquid) with a low CV of <5% in droplet diameter and with a minimum dead volume. If operated below a critical capillary number, the droplet diameter is defined by geometry and surface forces only. Above that critical capillary number, however, jetting occurs, leading to an increased droplet diameter and CV. Consequently, generation rates of monodisperse droplets are limited in pressure-driven systems. In this paper, we show that centrifugal step emulsification can overcome this limitation by applying sufficient buoyancy to the system. The buoyancy, induced by the centrifugal field and a density difference of the continuous and disperse phase, supports droplet necking by pulling the forming droplet away from the nozzle. The influence of buoyancy is studied using specific microfluidic designs that allow for supplying different buoyancies to the same droplet generation rates. For a droplet diameter of 100 μm, droplet generation at rates above 2.8k droplets per second and nozzle were reached, which is an increase of more than a factor of 8 in comparison to pressure-driven systems.
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Affiliation(s)
- Martin Schulz
- Hahn-Schickard , Georges-Koehler-Allee 103 , 79110 Freiburg , Germany
| | - Felix von Stetten
- Hahn-Schickard , Georges-Koehler-Allee 103 , 79110 Freiburg , Germany
- Laboratory for MEMS Applications, IMTEK - Department of Microsystems Engineering , University of Freiburg , Georges-Koehler-Allee 103 , 79110 Freiburg , Germany
| | - Roland Zengerle
- Hahn-Schickard , Georges-Koehler-Allee 103 , 79110 Freiburg , Germany
- Laboratory for MEMS Applications, IMTEK - Department of Microsystems Engineering , University of Freiburg , Georges-Koehler-Allee 103 , 79110 Freiburg , Germany
| | - Nils Paust
- Hahn-Schickard , Georges-Koehler-Allee 103 , 79110 Freiburg , Germany
- Laboratory for MEMS Applications, IMTEK - Department of Microsystems Engineering , University of Freiburg , Georges-Koehler-Allee 103 , 79110 Freiburg , Germany
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66
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O’Keefe CM, Kaushik AM, Wang TH. Highly Efficient Real-Time Droplet Analysis Platform for High-Throughput Interrogation of DNA Sequences by Melt. Anal Chem 2019; 91:11275-11282. [DOI: 10.1021/acs.analchem.9b02346] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Affiliation(s)
- Christine M. O’Keefe
- Department of Biomedical Engineering, Johns Hopkins University, Baltimore, Maryland 21218, United States
| | - Aniruddha M. Kaushik
- Department of Mechanical Engineering, Johns Hopkins University, Baltimore, Maryland 21218, United States
| | - Tza-Huei Wang
- Department of Biomedical Engineering, Johns Hopkins University, Baltimore, Maryland 21218, United States
- Department of Mechanical Engineering, Johns Hopkins University, Baltimore, Maryland 21218, United States
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67
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68
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Cornelis S, Tytgat O, Fauvart M, Gansemans Y, Vander Plaetsen AS, Wiederkehr RS, Deforce D, Van Nieuwerburgh F, Stakenborg T. Silicon µPCR Chip for Forensic STR Profiling with Hybeacon Probe Melting Curves. Sci Rep 2019; 9:7341. [PMID: 31089203 PMCID: PMC6517373 DOI: 10.1038/s41598-019-43946-5] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2019] [Accepted: 05/01/2019] [Indexed: 11/09/2022] Open
Abstract
The demand to perform forensic DNA profiling outside of centralized laboratories and on the crime scene is increasing. Several criminal investigations would benefit tremendously from having DNA based information available in the first hours rather than days or weeks. However, due to the complexity and time-consuming nature of standard DNA fingerprinting methods, rapid and automated analyses are hard to achieve. We here demonstrate the implementation of an alternative DNA fingerprinting method in a single microchip. By combining PCR amplification and HyBeacon melting assays in a silicon Lab-on-a-chip (LoC), a significant step towards rapid on-site DNA fingerprinting is taken. The small form factor of a LoC reduces reagent consumption and increases portability. Additional miniaturization is achieved through an integrated heating element covering 24 parallel micro-reactors with a reaction volume of 0.14 µl each. The high level of parallelization allows the simultaneous analysis of 4 short tandem repeat (STR) loci and the amelogenin gender marker commonly included in forensic DNA analysis. A reference and crime scene sample can be analyzed simultaneously for direct comparison. Importantly, by using industry-standard semiconductor manufacturing processes, mass manufacturability can be guaranteed. Following assay design and optimization, complete 5-loci profiles could be robustly generated on-chip that are on par with those obtained using conventional benchtop real-time PCR thermal cyclers. Together, our results are an important step towards the development of commercial, mass-produced, portable devices for on-site testing in forensic DNA analysis.
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Affiliation(s)
- Senne Cornelis
- Laboratory of Pharmaceutical Biotechnology, Ghent University, 9000, Gent, Belgium
- Department of Life Science Technologies, Imec, 3001, Leuven, Belgium
| | - Olivier Tytgat
- Laboratory of Pharmaceutical Biotechnology, Ghent University, 9000, Gent, Belgium
- Department of Life Science Technologies, Imec, 3001, Leuven, Belgium
| | - Maarten Fauvart
- Department of Life Science Technologies, Imec, 3001, Leuven, Belgium
| | - Yannick Gansemans
- Laboratory of Pharmaceutical Biotechnology, Ghent University, 9000, Gent, Belgium
| | | | | | - Dieter Deforce
- Laboratory of Pharmaceutical Biotechnology, Ghent University, 9000, Gent, Belgium.
| | | | - Tim Stakenborg
- Department of Life Science Technologies, Imec, 3001, Leuven, Belgium
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69
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Vaithiyanathan M, Safa N, Melvin AT. FluoroCellTrack: An algorithm for automated analysis of high-throughput droplet microfluidic data. PLoS One 2019; 14:e0215337. [PMID: 31042738 PMCID: PMC6493727 DOI: 10.1371/journal.pone.0215337] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2019] [Accepted: 03/29/2019] [Indexed: 12/21/2022] Open
Abstract
High-throughput droplet microfluidic devices with fluorescence detection systems provide several advantages over conventional end-point cytometric techniques due to their ability to isolate single cells and investigate complex intracellular dynamics. While there have been significant advances in the field of experimental droplet microfluidics, the development of complementary software tools has lagged. Existing quantification tools have limitations including interdependent hardware platforms or challenges analyzing a wide range of high-throughput droplet microfluidic data using a single algorithm. To address these issues, an all-in-one Python algorithm called FluoroCellTrack was developed and its wide-range utility was tested on three different applications including quantification of cellular response to drugs, droplet tracking, and intracellular fluorescence. The algorithm imports all images collected using bright field and fluorescence microscopy and analyzes them to extract useful information. Two parallel steps are performed where droplets are detected using a mathematical Circular Hough Transform (CHT) while single cells (or other contours) are detected by a series of steps defining respective color boundaries involving edge detection, dilation, and erosion. These feature detection steps are strengthened by segmentation and radius/area thresholding for precise detection and removal of false positives. Individually detected droplet and contour center maps are overlaid to obtain encapsulation information for further analyses. FluoroCellTrack demonstrates an average of a ~92-99% similarity with manual analysis and exhibits a significant reduction in analysis time of 30 min to analyze an entire cohort compared to 20 h required for manual quantification.
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Affiliation(s)
- Manibarathi Vaithiyanathan
- Cain Department of Chemical Engineering, Louisiana State University, Baton Rouge, Louisiana, United States of America
| | - Nora Safa
- Cain Department of Chemical Engineering, Louisiana State University, Baton Rouge, Louisiana, United States of America
| | - Adam T Melvin
- Cain Department of Chemical Engineering, Louisiana State University, Baton Rouge, Louisiana, United States of America
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70
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Lin X, Huang X, Urmann K, Xie X, Hoffmann MR. Digital Loop-Mediated Isothermal Amplification on a Commercial Membrane. ACS Sens 2019; 4:242-249. [PMID: 30604619 PMCID: PMC6350201 DOI: 10.1021/acssensors.8b01419] [Citation(s) in RCA: 64] [Impact Index Per Article: 12.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
![]()
In
this work, we report digital loop-mediated isothermal amplification
(LAMP) or reverse-transcription LAMP (RT-LAMP) on a commercial membrane,
without the need for complex chip fabrication or use of specialized
equipment. Due to the pore size distribution, the theoretical error
for digital LAMP on these membranes was analyzed, using a combination
of Random Distribution Model and Multivolume Theory. A facile peel-off
process was developed for effective droplet formation on the commercial
track-etched polycarbonate (PCTE) membrane. Each pore functions as
an individual nanoreactor for single DNA amplification. Absolute quantification
of bacteria genomic DNA was realized with a dynamic range from 11
to 1.1 × 105 copies/μL. One-step digital RT-LAMP
was also successfully performed on the membrane for the quantification
of MS2 virus in wastewater. With the introduction of new probes, the
positive pores can be easily distinguished from negative ones with
100 times difference in fluorescence intensities. Finally, the cost
of a disposable membrane is less than $0.10/piece, which, to the best
of our knowledge, is the most inexpensive way to perform digital LAMP.
The membrane system offers opportunities for point-of-care users or
common laboratories to perform digital quantification, single cell
analysis, or other bioassays in an inexpensive, flexible, and simplified
way.
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Affiliation(s)
- Xingyu Lin
- Linde + Robinson Laboratories, California Institute of Technology, Pasadena, California 91125, United States
| | - Xiao Huang
- Linde + Robinson Laboratories, California Institute of Technology, Pasadena, California 91125, United States
| | - Katharina Urmann
- Linde + Robinson Laboratories, California Institute of Technology, Pasadena, California 91125, United States
| | - Xing Xie
- Linde + Robinson Laboratories, California Institute of Technology, Pasadena, California 91125, United States
- School of Civil and Environmental Engineering, Georgia Institute of Technology, Atlanta, Georgia 30332, United States
| | - Michael R. Hoffmann
- Linde + Robinson Laboratories, California Institute of Technology, Pasadena, California 91125, United States
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71
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Nie M, Zheng M, Li C, Shen F, Liu M, Luo H, Song X, Lan Y, Pan JZ, Du W. Assembled Step Emulsification Device for Multiplex Droplet Digital Polymerase Chain Reaction. Anal Chem 2019; 91:1779-1784. [DOI: 10.1021/acs.analchem.8b04313] [Citation(s) in RCA: 37] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Affiliation(s)
- Mengyue Nie
- State Key Laboratory of Microbial Resources, Institute of Microbiology, Chinese Academy of Sciences, 100101, Beijing, China
- College of Life Sciences, University of the Chinese Academy of Sciences, Beijing, 10049, China
| | - Meng Zheng
- State Key Laboratory of Microbial Resources, Institute of Microbiology, Chinese Academy of Sciences, 100101, Beijing, China
- Savaid Medical School, University of the Chinese Academy of Sciences, Beijing, 10049, China
| | - Caiming Li
- State Key Laboratory of Microbial Resources, Institute of Microbiology, Chinese Academy of Sciences, 100101, Beijing, China
- College of Life Sciences, University of the Chinese Academy of Sciences, Beijing, 10049, China
| | - Feng Shen
- School of Biomedical Engineering, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Manhua Liu
- Department of Instrument Science and Engineering, The School of Electronic Information and Electrical Engineering, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Haibei Luo
- Pilot Gene Technologies, Hangzhou, 311203, China
| | - Xiaohui Song
- Pilot Gene Technologies, Hangzhou, 311203, China
| | - Ying Lan
- State Key Laboratory of Microbial Resources, Institute of Microbiology, Chinese Academy of Sciences, 100101, Beijing, China
| | - Jian-Zhang Pan
- Institute of Microanalytical Systems, Department of Chemistry, Zhejiang University, Hangzhou, 310058, China
| | - Wenbin Du
- State Key Laboratory of Microbial Resources, Institute of Microbiology, Chinese Academy of Sciences, 100101, Beijing, China
- College of Life Sciences, University of the Chinese Academy of Sciences, Beijing, 10049, China
- Savaid Medical School, University of the Chinese Academy of Sciences, Beijing, 10049, China
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72
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Yin J, Hu J, Sun J, Wang B, Mu Y. A fast nucleic acid extraction system for point-of-care and integration of digital PCR. Analyst 2019; 144:7032-7040. [DOI: 10.1039/c9an01067j] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Abstract
This work showcases a PTFE-based nucleic acid extraction system for point-of-care and integration of digital PCR.
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Affiliation(s)
- Juxin Yin
- Research Centre for Analytical Instrumentation
- Institute of Cyber-Systems and Control
- State Key Laboratory of Industrial Control Technology
- Zhejiang University
- Hangzhou
| | - Jiumei Hu
- Research Centre for Analytical Instrumentation
- Institute of Cyber-Systems and Control
- State Key Laboratory of Industrial Control Technology
- Zhejiang University
- Hangzhou
| | - Jingjing Sun
- Research Centre for Analytical Instrumentation
- Institute of Cyber-Systems and Control
- State Key Laboratory of Industrial Control Technology
- Zhejiang University
- Hangzhou
| | - Ben Wang
- Cancer Institute (Key Laboratory of Cancer Prevention and Intervention
- National Ministry of Education)
- The Second Affiliated Hospital
- Zhejiang University School of Medicine
- Hangzhou
| | - Ying Mu
- Research Centre for Analytical Instrumentation
- Institute of Cyber-Systems and Control
- State Key Laboratory of Industrial Control Technology
- Zhejiang University
- Hangzhou
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73
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Malic L, Daoud J, Geissler M, Boutin A, Lukic L, Janta M, Elmanzalawy A, Veres T. Epigenetic subtyping of white blood cells using a thermoplastic elastomer-based microfluidic emulsification device for multiplexed, methylation-specific digital droplet PCR. Analyst 2019; 144:6541-6553. [DOI: 10.1039/c9an01316d] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
Digital droplet PCR for epigenetic leukocyte subtyping from clinically relevant samples is implemented using a thermoplastic elastomer microfluidic droplet generator as a first step towards an economical, customizable and easily deployable system.
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Affiliation(s)
- Lidija Malic
- Life Sciences Division
- National Research Council of Canada
- Boucherville
- Canada
| | - Jamal Daoud
- Life Sciences Division
- National Research Council of Canada
- Boucherville
- Canada
| | - Matthias Geissler
- Life Sciences Division
- National Research Council of Canada
- Boucherville
- Canada
| | - Alex Boutin
- Life Sciences Division
- National Research Council of Canada
- Boucherville
- Canada
| | - Ljuboje Lukic
- Life Sciences Division
- National Research Council of Canada
- Boucherville
- Canada
| | - Mojra Janta
- Life Sciences Division
- National Research Council of Canada
- Boucherville
- Canada
| | | | - Teodor Veres
- Life Sciences Division
- National Research Council of Canada
- Boucherville
- Canada
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74
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Ning Y, Cui X, Yang C, Jing F, Bian X, Yi L, Li G. A self-digitization chip integrated with hydration layer for low-cost and robust digital PCR. Anal Chim Acta 2018; 1055:65-73. [PMID: 30782371 DOI: 10.1016/j.aca.2018.12.029] [Citation(s) in RCA: 35] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2018] [Revised: 11/15/2018] [Accepted: 12/17/2018] [Indexed: 11/19/2022]
Abstract
We present a self-discretization and zero-water-loss microfluidic digital PCR (dPCR) device to enable low-cost and robust quantitative nucleic acid assays. In this device, a thin void is integrated beneath the reaction chamber array. By utilizing the permeability of polydimethylsiloxane (PDMS) film, the integrated void serves a dual function: vacuum "accumulator" and hydration "reservoir". The combination of pre-stored pumping energy and water compensation for evaporation loss enables simple, robust and reliable single-DNA-molecule amplification and detection in 10,000 reactors of picoliter volume. Compared to the conventional degassing PDMS pumps, the vacuum accumulator exhibits superior performance due to more vacuum storage and shorter diffusion distance. We also evaluated the performance of the embedded hydration layer in suppressing evaporation loss at elevated temperatures, and verified that zero-water-loss could be achieved for all reaction chambers in our dPCR chip during thermal cycling. By performing quantitative detection of T790M DNA from 10 to 104 copies/μL, the proposed dPCR chip demonstrated high accuracy and excellent performance for the absolute quantification of the target gene with a dynamic range of 104. The simplicity and robustness of our dPCR chip make it well suited for low-cost molecular diagnostic assays under resource-limited settings.
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Affiliation(s)
- Yongfeng Ning
- Key Laboratory of Optoelectronic Technology and Systems, Ministry of Education, Defense Key Disciplines Lab of Novel Micro-Nano Devices and System Technology, Chongqing University, Chongqing, 400044, China
| | - Xu Cui
- Key Laboratory of Optoelectronic Technology and Systems, Ministry of Education, Defense Key Disciplines Lab of Novel Micro-Nano Devices and System Technology, Chongqing University, Chongqing, 400044, China
| | - Chao Yang
- Key Laboratory of Optoelectronic Technology and Systems, Ministry of Education, Defense Key Disciplines Lab of Novel Micro-Nano Devices and System Technology, Chongqing University, Chongqing, 400044, China
| | - Fengxiang Jing
- Shanghai Turtle Technology Company Limited, Shanghai, 200439, China.
| | - Xiaojun Bian
- College of Food Science and Technology, Shanghai Ocean University, Shanghai, 201306, China
| | - Lin Yi
- Chongqing Key Laboratory of Translational Research for Cancer Metastasis and Individualized Treatment, Chongqing University Cancer Hospital & Chongqing Cancer Institute & Chongqing Cancer Hospital, Chongqing, 400030, China
| | - Gang Li
- Key Laboratory of Optoelectronic Technology and Systems, Ministry of Education, Defense Key Disciplines Lab of Novel Micro-Nano Devices and System Technology, Chongqing University, Chongqing, 400044, China.
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75
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Pan Z, Men Y, Senapati S, Chang HC. Immersed AC electrospray (iACE) for monodispersed aqueous droplet generation. BIOMICROFLUIDICS 2018; 12:044113. [PMID: 30174772 PMCID: PMC6095705 DOI: 10.1063/1.5048307] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/12/2018] [Accepted: 08/07/2018] [Indexed: 05/16/2023]
Abstract
We report a new immersed alternating current (AC) electrospray droplet generation method that can generate monodispersed water-in-oil droplets, with diameters ranging from 5 μm to 150 μm, in a stationary oil phase. This method offers high through-put, easy size tuning, and droplets with a viscous aqueous phase at high ionic strengths (raw physiological samples). Yet, it does not require coordinated flows of the dispersed/continuous phases or even a microfluidic chip. The design relies on a small constant back pressure (less than 0.1 atm) to drive the water phase through a nozzle (glass micropipette) and a non-isotropic AC electric Maxwell pressure to eject it into the oil phase. Undesirable field-induced discharge and nanojet formation at the tip are suppressed with a biocompatible polymer, polyethylene oxide. Its viscoelastic property favors the monodispersed dripping mechanism, with a distinct neck forming at the capillary tip before pinch-off, such that the tip dimension is the only controlling length scale. Consecutive droplets are connected by a whipping filament that disperses the drops away from the high-field nozzle to prevent electro-coalescence. A scaling theory is developed to correlate the droplet size with the applied pressure, the most important tuning parameter, and to determine the optimum frequency. The potential applications of this technology to biological systems are demonstrated with a digital loop-mediated isothermal amplification experiment, with little damage to the nucleic acids and other biomolecules, but with easy adaptive tuning for the optimum droplet number for accurate quantification.
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Affiliation(s)
- Zehao Pan
- Center for Microfluidics and Medical Diagnostics, Department of Chemical and Biomolecular Engineering, University of Notre Dame, Notre Dame, 46556 Indiana, USA
| | - Yongfan Men
- Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen, Guangdong 518055, China
| | - Satyajyoti Senapati
- Center for Microfluidics and Medical Diagnostics, Department of Chemical and Biomolecular Engineering, University of Notre Dame, Notre Dame, 46556 Indiana, USA
| | - Hsueh-Chia Chang
- Center for Microfluidics and Medical Diagnostics, Department of Chemical and Biomolecular Engineering, University of Notre Dame, Notre Dame, 46556 Indiana, USA
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Tsugane M, Suzuki H. Reverse Transcription Polymerase Chain Reaction in Giant Unilamellar Vesicles. Sci Rep 2018; 8:9214. [PMID: 29907779 PMCID: PMC6003926 DOI: 10.1038/s41598-018-27547-2] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2018] [Accepted: 06/04/2018] [Indexed: 02/07/2023] Open
Abstract
We assessed the applicability of giant unilamellar vesicles (GUVs) for RNA detection using in vesicle reverse transcription polymerase chain reaction (RT-PCR). We prepared GUVs that encapsulated one-pot RT-PCR reaction mixture including template RNA, primers, and Taqman probe, using water-in-oil emulsion transfer method. After thermal cycling, we analysed the GUVs that exhibited intense fluorescence signals, which represented the cDNA amplification. The detailed analysis of flow cytometry data demonstrated that rRNA and mRNA in the total RNA can be amplified from 10–100 copies in the GUVs with 5–10 μm diameter, although the fraction of reactable GUV was approximately 60% at most. Moreover, we report that the target RNA, which was directly transferred into the GUV reactors via membrane fusion, can be amplified and detected using in vesicle RT-PCR. These results suggest that the GUVs can be used as biomimetic reactors capable of performing PCR and RT-PCR, which are important in analytical and diagnostic applications with additional functions.
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Affiliation(s)
- Mamiko Tsugane
- Department of Precision Mechanics, Faculty of Science and Engineering, Chuo University, 1-13-27 Kasuga, Bunkyo-ku, Tokyo, Japan.,Japan Society for the Promotion of Science (JSPS), 5-3-1 Kojimachi, Chiyoda-ku, Tokyo, Japan
| | - Hiroaki Suzuki
- Department of Precision Mechanics, Faculty of Science and Engineering, Chuo University, 1-13-27 Kasuga, Bunkyo-ku, Tokyo, Japan.
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77
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Owens CE, Hart AJ. High-precision modular microfluidics by micromilling of interlocking injection-molded blocks. LAB ON A CHIP 2018; 18:890-901. [PMID: 29372201 DOI: 10.1039/c7lc00951h] [Citation(s) in RCA: 58] [Impact Index Per Article: 9.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/21/2023]
Abstract
Wider use and adaptation of microfluidics is hindered by the infrastructure, knowledge, and time required to build prototype systems, especially when multiple fluid operations and measurements are required. As a result, 3D printing of microfluidics is attracting interest, yet cannot readily achieve the feature size, smoothness, and optical transparency needed for many standard microfluidic systems. Herein we present a new approach to the design and construction of high-precision modular microfluidics, using standard injection-molded blocks that are modified using micromilling and assembled via elastically averaged contacts. Desktop micromilling achieves channel dimensions as small as 50 μm depth and 150 μm width and adhesive films seal channels to allow internal fluid pressure of >400 kPa. Elastically averaged connections between bricks result in a mechanical locating repeatability of ∼1 μm, enabling fluid to pass between bricks via an O-ring seal with >99.9% reliability. We demonstrated and tested block-based systems for generating droplets at rates above 9000 min-1 and COV <3%, and integrated optical sensors. We also show how blocks can be used to build easily reconfigurable interfaces with glass microfluidic devices and imaging hardware. Microfluidic bricks fabricated by FDM and SLA 3D printing cannot achieve the dimensional quality of molded bricks, yet 3D printing allows customized bricks to be integrated with standard LEGOs. Our approach enables a wide variety of modular microfluidic units to be built using a widely available, cost-effective platform, encouraging use in both research and education.
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Affiliation(s)
- Crystal E Owens
- Department of Mechanical Engineering and Laboratory for Manufacturing and Productivity, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, Massachusetts 02139, USA.
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78
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Tarn MD, Sikora SNF, Porter GCE, O’Sullivan D, Adams M, Whale TF, Harrison AD, Vergara-Temprado J, Wilson TW, Shim JU, Murray BJ. The study of atmospheric ice-nucleating particles via microfluidically generated droplets. MICROFLUIDICS AND NANOFLUIDICS 2018; 22:52. [PMID: 29720926 PMCID: PMC5915516 DOI: 10.1007/s10404-018-2069-x] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/25/2017] [Accepted: 04/05/2018] [Indexed: 05/10/2023]
Abstract
Ice-nucleating particles (INPs) play a significant role in the climate and hydrological cycle by triggering ice formation in supercooled clouds, thereby causing precipitation and affecting cloud lifetimes and their radiative properties. However, despite their importance, INP often comprise only 1 in 103-106 ambient particles, making it difficult to ascertain and predict their type, source, and concentration. The typical techniques for quantifying INP concentrations tend to be highly labour-intensive, suffer from poor time resolution, or are limited in sensitivity to low concentrations. Here, we present the application of microfluidic devices to the study of atmospheric INPs via the simple and rapid production of monodisperse droplets and their subsequent freezing on a cold stage. This device offers the potential for the testing of INP concentrations in aqueous samples with high sensitivity and high counting statistics. Various INPs were tested for validation of the platform, including mineral dust and biological species, with results compared to literature values. We also describe a methodology for sampling atmospheric aerosol in a manner that minimises sampling biases and which is compatible with the microfluidic device. We present results for INP concentrations in air sampled during two field campaigns: (1) from a rural location in the UK and (2) during the UK's annual Bonfire Night festival. These initial results will provide a route for deployment of the microfluidic platform for the study and quantification of INPs in upcoming field campaigns around the globe, while providing a benchmark for future lab-on-a-chip-based INP studies.
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Affiliation(s)
- Mark D. Tarn
- School of Earth and Environment, University of Leeds, Leeds, LS2 9JT UK
- School of Physics and Astronomy, University of Leeds, Leeds, LS2 9JT UK
| | | | - Grace C. E. Porter
- School of Earth and Environment, University of Leeds, Leeds, LS2 9JT UK
- School of Physics and Astronomy, University of Leeds, Leeds, LS2 9JT UK
| | - Daniel O’Sullivan
- School of Earth and Environment, University of Leeds, Leeds, LS2 9JT UK
| | - Mike Adams
- School of Earth and Environment, University of Leeds, Leeds, LS2 9JT UK
| | - Thomas F. Whale
- School of Earth and Environment, University of Leeds, Leeds, LS2 9JT UK
| | | | - Jesús Vergara-Temprado
- School of Earth and Environment, University of Leeds, Leeds, LS2 9JT UK
- Present Address: Institute for Atmospheric and Climate Science, ETH Zürich, Universitätstrasse 16, 8092 Zurich, Switzerland
| | - Theodore W. Wilson
- School of Earth and Environment, University of Leeds, Leeds, LS2 9JT UK
- Present Address: Owlstone Medical Ltd., 127 Science Park, Cambridge, CB4 0GD UK
| | - Jung-uk Shim
- School of Physics and Astronomy, University of Leeds, Leeds, LS2 9JT UK
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79
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Parra M, Jung J, Boone TD, Tran L, Blaber EA, Brown M, Chin M, Chinn T, Cohen J, Doebler R, Hoang D, Hyde E, Lera M, Luzod LT, Mallinson M, Marcu O, Mohamedaly Y, Ricco AJ, Rubins K, Sgarlato GD, Talavera RO, Tong P, Uribe E, Williams J, Wu D, Yousuf R, Richey CS, Schonfeld J, Almeida EAC. Microgravity validation of a novel system for RNA isolation and multiplex quantitative real time PCR analysis of gene expression on the International Space Station. PLoS One 2017; 12:e0183480. [PMID: 28877184 PMCID: PMC5587110 DOI: 10.1371/journal.pone.0183480] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2017] [Accepted: 08/04/2017] [Indexed: 11/29/2022] Open
Abstract
The International Space Station (ISS) National Laboratory is dedicated to studying the effects of space on life and physical systems, and to developing new science and technologies for space exploration. A key aspect of achieving these goals is to operate the ISS National Lab more like an Earth-based laboratory, conducting complex end-to-end experimentation, not limited to simple microgravity exposure. Towards that end NASA developed a novel suite of molecular biology laboratory tools, reagents, and methods, named WetLab-2, uniquely designed to operate in microgravity, and to process biological samples for real-time gene expression analysis on-orbit. This includes a novel fluidic RNA Sample Preparation Module and fluid transfer devices, all-in-one lyophilized PCR assays, centrifuge, and a real-time PCR thermal cycler. Here we describe the results from the WetLab-2 validation experiments conducted in microgravity during ISS increment 47/SPX-8. Specifically, quantitative PCR was performed on a concentration series of DNA calibration standards, and Reverse Transcriptase-quantitative PCR was conducted on RNA extracted and purified on-orbit from frozen Escherichia coli and mouse liver tissue. Cycle threshold (Ct) values and PCR efficiencies obtained on-orbit from DNA standards were similar to Earth (1 g) controls. Also, on-orbit multiplex analysis of gene expression from bacterial cells and mammalian tissue RNA samples was successfully conducted in about 3 h, with data transmitted within 2 h of experiment completion. Thermal cycling in microgravity resulted in the trapping of gas bubbles inside septa cap assay tubes, causing small but measurable increases in Ct curve noise and variability. Bubble formation was successfully suppressed in a rapid follow-up on-orbit experiment using standard caps to pressurize PCR tubes and reduce gas release during heating cycles. The WetLab-2 facility now provides a novel operational on-orbit research capability for molecular biology and demonstrates the feasibility of more complex wet bench experiments in the ISS National Lab environment.
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Affiliation(s)
- Macarena Parra
- Space Biosciences Research Branch, NASA Ames Research Center, Moffett Field, California, United States of America
| | - Jimmy Jung
- Engineering Systems Division, NASA Ames Research Center, Moffett Field, California, United States of America
- KBRWyle, Mountain View, California, United States of America
| | - Travis D. Boone
- Office of the Director, NASA Ames Research Center, Moffett Field, California, United States of America
- Millenium Engineering & Integration Co, Mountain View, California, United States of America
| | - Luan Tran
- Space Biosciences Research Branch, NASA Ames Research Center, Moffett Field, California, United States of America
- KBRWyle, Mountain View, California, United States of America
| | - Elizabeth A. Blaber
- Space Biosciences Research Branch, NASA Ames Research Center, Moffett Field, California, United States of America
- Universities Space Research Association, Mountain View, California, United States of America
| | - Mark Brown
- Applications Development, Claremont Biosolutions, Upland, California, United States of America
| | - Matthew Chin
- Engineering Systems Division, NASA Ames Research Center, Moffett Field, California, United States of America
- Millenium Engineering & Integration Co, Mountain View, California, United States of America
| | - Tori Chinn
- Engineering Systems Division, NASA Ames Research Center, Moffett Field, California, United States of America
- Millenium Engineering & Integration Co, Mountain View, California, United States of America
| | - Jacob Cohen
- Office of the Director, NASA Ames Research Center, Moffett Field, California, United States of America
| | - Robert Doebler
- Applications Development, Claremont Biosolutions, Upland, California, United States of America
| | - Dzung Hoang
- Engineering Systems Division, NASA Ames Research Center, Moffett Field, California, United States of America
- Millenium Engineering & Integration Co, Mountain View, California, United States of America
| | - Elizabeth Hyde
- Engineering Systems Division, NASA Ames Research Center, Moffett Field, California, United States of America
- Millenium Engineering & Integration Co, Mountain View, California, United States of America
| | - Matthew Lera
- KBRWyle, Mountain View, California, United States of America
- Flight Systems Implementation Branch, NASA Ames Research Center, Moffett Field, California, United States of America
| | - Louie T. Luzod
- Engineering Systems Division, NASA Ames Research Center, Moffett Field, California, United States of America
| | - Mark Mallinson
- Engineering Systems Division, NASA Ames Research Center, Moffett Field, California, United States of America
| | - Oana Marcu
- Space Biosciences Research Branch, NASA Ames Research Center, Moffett Field, California, United States of America
- KBRWyle, Mountain View, California, United States of America
| | - Youssef Mohamedaly
- Engineering Systems Division, NASA Ames Research Center, Moffett Field, California, United States of America
- Millenium Engineering & Integration Co, Mountain View, California, United States of America
| | - Antonio J. Ricco
- Mission Design Division, NASA Ames Research Center, Moffett Field, California, United States of America
- Stanford University, Palo Alto, California, United States of America
| | - Kathleen Rubins
- NASA Astronaut Corps, NASA Johnson Space Center, Houston, Texas, United States of America
| | - Gregory D. Sgarlato
- Engineering Systems Division, NASA Ames Research Center, Moffett Field, California, United States of America
- KBRWyle, Mountain View, California, United States of America
| | - Rafael O. Talavera
- Engineering Systems Division, NASA Ames Research Center, Moffett Field, California, United States of America
- Millenium Engineering & Integration Co, Mountain View, California, United States of America
| | - Peter Tong
- Engineering Systems Division, NASA Ames Research Center, Moffett Field, California, United States of America
- Millenium Engineering & Integration Co, Mountain View, California, United States of America
| | - Eddie Uribe
- Universities Space Research Association, Mountain View, California, United States of America
| | - Jeffrey Williams
- NASA Astronaut Corps, NASA Johnson Space Center, Houston, Texas, United States of America
| | - Diana Wu
- KBRWyle, Mountain View, California, United States of America
- Mission Design Division, NASA Ames Research Center, Moffett Field, California, United States of America
| | - Rukhsana Yousuf
- Space Biosciences Research Branch, NASA Ames Research Center, Moffett Field, California, United States of America
- KBRWyle, Mountain View, California, United States of America
| | - Charles S. Richey
- Universities Space Research Association, Mountain View, California, United States of America
| | - Julie Schonfeld
- Engineering Systems Division, NASA Ames Research Center, Moffett Field, California, United States of America
| | - Eduardo A. C. Almeida
- Space Biosciences Research Branch, NASA Ames Research Center, Moffett Field, California, United States of America
- * E-mail:
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80
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Murata Y, Nakashoji Y, Kondo M, Tanaka Y, Hashimoto M. Rapid automatic creation of monodisperse emulsion droplets by microfluidic device with degassed PDMS slab as a detachable suction actuator. Electrophoresis 2017; 39:504-511. [DOI: 10.1002/elps.201700247] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2017] [Revised: 07/28/2017] [Accepted: 07/31/2017] [Indexed: 12/26/2022]
Affiliation(s)
- Yuki Murata
- Department of Chemical Engineering and Materials Science; Faculty of Science and Engineering; Doshisha University; Kyotanabe Kyoto Japan
| | - Yuta Nakashoji
- Department of Chemical Engineering and Materials Science; Faculty of Science and Engineering; Doshisha University; Kyotanabe Kyoto Japan
| | - Masaki Kondo
- Department of Chemical Engineering and Materials Science; Faculty of Science and Engineering; Doshisha University; Kyotanabe Kyoto Japan
| | - Yugo Tanaka
- Department of Chemical Engineering and Materials Science; Faculty of Science and Engineering; Doshisha University; Kyotanabe Kyoto Japan
| | - Masahiko Hashimoto
- Department of Chemical Engineering and Materials Science; Faculty of Science and Engineering; Doshisha University; Kyotanabe Kyoto Japan
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81
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Okura N, Nakashoji Y, Koshirogane T, Kondo M, Tanaka Y, Inoue K, Hashimoto M. A compact and facile microfluidic droplet creation device using a piezoelectric diaphragm micropump for droplet digital PCR platforms. Electrophoresis 2017; 38:2666-2672. [DOI: 10.1002/elps.201700039] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2017] [Revised: 05/16/2017] [Accepted: 06/11/2017] [Indexed: 11/08/2022]
Affiliation(s)
- Naoaki Okura
- Department of Chemical Engineering and Materials Science, Faculty of Science and Engineering; Doshisha University; Kyotanabe Kyoto Japan
| | - Yuta Nakashoji
- Department of Chemical Engineering and Materials Science, Faculty of Science and Engineering; Doshisha University; Kyotanabe Kyoto Japan
| | - Toshihiro Koshirogane
- Department of Chemical Engineering and Materials Science, Faculty of Science and Engineering; Doshisha University; Kyotanabe Kyoto Japan
| | - Masaki Kondo
- Department of Chemical Engineering and Materials Science, Faculty of Science and Engineering; Doshisha University; Kyotanabe Kyoto Japan
| | - Yugo Tanaka
- Department of Chemical Engineering and Materials Science, Faculty of Science and Engineering; Doshisha University; Kyotanabe Kyoto Japan
| | - Kohei Inoue
- Department of Chemical Engineering and Materials Science, Faculty of Science and Engineering; Doshisha University; Kyotanabe Kyoto Japan
| | - Masahiko Hashimoto
- Department of Chemical Engineering and Materials Science, Faculty of Science and Engineering; Doshisha University; Kyotanabe Kyoto Japan
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82
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Sesen M, Alan T, Neild A. Droplet control technologies for microfluidic high throughput screening (μHTS). LAB ON A CHIP 2017. [PMID: 28631799 DOI: 10.1039/c7lc00005g] [Citation(s) in RCA: 53] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
Abstract
The transition from micro well plate and robotics based high throughput screening (HTS) to chip based screening has already started. This transition promises reduced droplet volumes thereby decreasing the amount of fluids used in these studies. Moreover, it significantly boosts throughput allowing screening to keep pace with the overwhelming number of molecular targets being discovered. In this review, we analyse state-of-the-art droplet control technologies that exhibit potential to be used in this new generation of screening devices. Since these systems are enclosed and usually planar, even some of the straightforward methods used in traditional HTS such as pipetting and reading can prove challenging to replicate in microfluidic high throughput screening (μHTS). We critically review the technologies developed for this purpose in depth, describing the underlying physics and discussing the future outlooks.
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Affiliation(s)
- Muhsincan Sesen
- Department of Mechanical and Aerospace Engineering, Monash University, Clayton, VIC 3800, Australia.
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83
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McQuillan JS, Robidart JC. Molecular-biological sensing in aquatic environments: recent developments and emerging capabilities. Curr Opin Biotechnol 2017; 45:43-50. [DOI: 10.1016/j.copbio.2016.11.022] [Citation(s) in RCA: 43] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2016] [Revised: 11/16/2016] [Accepted: 11/25/2016] [Indexed: 11/16/2022]
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84
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Zhu P, Wang L. Passive and active droplet generation with microfluidics: a review. LAB ON A CHIP 2016; 17:34-75. [PMID: 27841886 DOI: 10.1039/c6lc01018k] [Citation(s) in RCA: 518] [Impact Index Per Article: 64.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
Abstract
Precise and effective control of droplet generation is critical for applications of droplet microfluidics ranging from materials synthesis to lab-on-a-chip systems. Methods for droplet generation can be either passive or active, where the former generates droplets without external actuation, and the latter makes use of additional energy input in promoting interfacial instabilities for droplet generation. A unified physical understanding of both passive and active droplet generation is beneficial for effectively developing new techniques meeting various demands arising from applications. Our review of passive approaches focuses on the characteristics and mechanisms of breakup modes of droplet generation occurring in microfluidic cross-flow, co-flow, flow-focusing, and step emulsification configurations. The review of active approaches covers the state-of-the-art techniques employing either external forces from electrical, magnetic and centrifugal fields or methods of modifying intrinsic properties of flows or fluids such as velocity, viscosity, interfacial tension, channel wettability, and fluid density, with a focus on their implementations and actuation mechanisms. Also included in this review is the contrast among different approaches of either passive or active nature.
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Affiliation(s)
- Pingan Zhu
- Department of Mechanical Engineering, The University of Hong Kong, Hong Kong, China. and HKU-Zhejiang Institute of Research and Innovation (HKU-ZIRI), 311300, Hangzhou, Zhejiang, China
| | - Liqiu Wang
- Department of Mechanical Engineering, The University of Hong Kong, Hong Kong, China. and HKU-Zhejiang Institute of Research and Innovation (HKU-ZIRI), 311300, Hangzhou, Zhejiang, China
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85
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Ahrberg CD, Manz A, Chung BG. Polymerase chain reaction in microfluidic devices. LAB ON A CHIP 2016; 16:3866-3884. [PMID: 27713993 DOI: 10.1039/c6lc00984k] [Citation(s) in RCA: 147] [Impact Index Per Article: 18.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/10/2023]
Abstract
The invention of the polymerase chain reaction (PCR) has caused a revolution in molecular biology, giving access to a method of amplifying deoxyribonucleic acid (DNA) molecules across several orders of magnitude. Since the first application of PCR in a microfluidic device was developed in 1998, an increasing number of researchers have continued the development of microfluidic PCR systems. In this review, we introduce recent developments in microfluidic-based space and time domain devices as well as discuss various designs integrated with multiple functions for sample preparation and detection. The development of isothermal nucleic acid amplification and digital PCR microfluidic devices within the last five years is also highlighted. Furthermore, we introduce various commercial microfluidic PCR devices.
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Affiliation(s)
| | - Andreas Manz
- Microfluidics group, KIST-Europe, Saarbrücken, Germany and Mechanotronics Department, Universität des Saarlandes, Saarbrücken, Germany
| | - Bong Geun Chung
- Department of Mechanical Engineering, Sogang University, Seoul, Korea.
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86
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Butchbach MER. Applicability of digital PCR to the investigation of pediatric-onset genetic disorders. BIOMOLECULAR DETECTION AND QUANTIFICATION 2016; 10:9-14. [PMID: 27990344 PMCID: PMC5154671 DOI: 10.1016/j.bdq.2016.06.002] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Received: 04/20/2016] [Revised: 06/08/2016] [Accepted: 06/21/2016] [Indexed: 12/12/2022]
Abstract
Early-onset rare diseases have a strong impact on child healthcare even though the incidence of each of these diseases is relatively low. In order to better manage the care of these children, it is imperative to quickly diagnose the molecular bases for these disorders as well as to develop technologies with prognostic potential. Digital PCR (dPCR) is well suited for this role by providing an absolute quantification of the target DNA within a sample. This review illustrates how dPCR can be used to identify genes associated with pediatric-onset disorders, to identify copy number status of important disease-causing genes and variants and to quantify modifier genes. It is also a powerful technology to track changes in genomic biomarkers with disease progression. Based on its capability to accurately and reliably detect genomic alterations with high sensitivity and a large dynamic detection range, dPCR has the potential to become the tool of choice for the verification of pediatric disease-associated mutations identified by next generation sequencing, copy number determination and noninvasive prenatal screening.
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Affiliation(s)
- Matthew E R Butchbach
- Center for Applied Clinical Genomics, Nemours Biomedical Research, Nemours Alfred I. duPont Hospital for Children, Wilmington, DE, USA; Center for Pediatric Research, Nemours Biomedical Research, Nemours Alfred I. duPont Hospital for Children, Wilmington, DE, USA; Department of Biological Sciences, University of Delaware, Newark, DE, USA; Department of Pediatrics, Thomas Jefferson University, Philadelphia, PA, USA
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87
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Kahkeshani S, Di Carlo D. Drop formation using ferrofluids driven magnetically in a step emulsification device. LAB ON A CHIP 2016; 16:2474-80. [PMID: 27250530 DOI: 10.1039/c6lc00645k] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/08/2023]
Abstract
We present a microfluidic droplet generation technique, where instead of pumps, only magnetic field gradient strength adjusted by the position of an external magnet is used for controllable emulsification of ferrofluid containing solutions. Uniform droplet generation at frequencies O(1-100) Hz per channel for long periods of time (10s of minutes) were easily achieved. In this method, adding magnetic nanoparticles (10 nm) into aqueous solutions imparts a magnetic body force on the fluid in the presence of an external magnetic field gradient. Consequently, the aqueous fluid moves toward the position of an external magnet and towards a junction with a larger width and height oil filled reservoir. Emulsification occurs at the junction due to a rapid change in surface tension forces due to the abrupt change in channel height. Droplet generation rate could be controlled by adjusting surface tension/viscosity, number of channels, and strength of the magnetic force. The geometry of the channel, rather than flow rates or magnetic force, plays the dominant role in defining the droplet size. In addition, reagents mixed with ferrofluids could also be introduced from two or more separate inlets and mixed prior to emulsification as they move toward the step driven by magnetic force. Mixing reagents on chip and forming droplets all within a small foot-print defined by movement of an external magnet is a unique feature of this method suitable for point-of-care diagnostics and other bioengineering applications.
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Affiliation(s)
- Soroush Kahkeshani
- Department of Bioengineering, University of California, Los Angeles, CA 90024, USA.
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88
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Bissonnette L, Bergeron MG. The GenePOC Platform, a Rational Solution for Extreme Point-of-Care Testing. MICROMACHINES 2016; 7:E94. [PMID: 30404270 PMCID: PMC6189873 DOI: 10.3390/mi7060094] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/19/2016] [Revised: 05/06/2016] [Accepted: 05/17/2016] [Indexed: 01/02/2023]
Abstract
Extreme point-of-care (POC) testing for infections, as performed (endured) in low-resource settings, developing countries, tropical areas, or in conditions following emergency crises or natural disasters, must be undertaken under environmental, logistic, and societal conditions which impose a significant deal of stress on local human populations and healthcare providers. For disease diagnostics or management, simple and robust biomedical equipment and reagents are required and needed. This chapter aims to overview some of these stresses (requirements) and intends to describe some of the solutions already engineered at the heart of centripetal (centrifugal) microfluidic platforms such as that of GenePOC Inc. to enable rapid, robust, and reproducible nucleic acid-based diagnostics of infectious diseases, to better control the morbidity and mortality of infections and the expanding threat posed by antimicrobial resistance.
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Affiliation(s)
- Luc Bissonnette
- Centre de recherche en infectiologie de l'Université Laval, Axe maladies infectieuses et immunitaires, Centre de recherche du CHU de Québec-Université Laval, Québec City, QC G1V 4G2, Canada.
- Département de microbiologie-infectiologie et d'immunologie, Faculté de médecine, Université Laval, Québec City, QC G1V 0A6, Canada.
| | - Michel G Bergeron
- Centre de recherche en infectiologie de l'Université Laval, Axe maladies infectieuses et immunitaires, Centre de recherche du CHU de Québec-Université Laval, Québec City, QC G1V 4G2, Canada.
- Département de microbiologie-infectiologie et d'immunologie, Faculté de médecine, Université Laval, Québec City, QC G1V 0A6, Canada.
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89
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Furutani S, Kajiya M, Aramaki N, Kubo I. Rapid Detection of Salmonella enterica in Food Using a Compact Disc-Shaped Device. MICROMACHINES 2016; 7:mi7010010. [PMID: 30407383 PMCID: PMC6190184 DOI: 10.3390/mi7010010] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/13/2015] [Revised: 01/07/2016] [Accepted: 01/12/2016] [Indexed: 11/28/2022]
Abstract
Rapid detection of food-borne pathogens is essential to public health and the food industry. Although the conventional culture method is highly sensitive, it takes at least a few days to detect food-borne pathogens. Even though polymerase chain reaction (PCR) can detect food-borne pathogens in a few hours, it is more expensive and unsatisfactorily sensitive relative to the culture method. We have developed a method to rapidly detect Salmonella enterica by using a compact disc (CD)-shaped device that can reduce reagent consumption in conventional PCR. The detection method, which combines culture and PCR, is more rapid than the conventional culture method and is more sensitive and cheaper than PCR. In this study, we also examined a sample preparation method that involved collecting bacterial cells from food. The bacteria collected from chicken meat spiked with S. enterica were mixed with PCR reagents, and PCR was performed on the device. At a low concentration of S. enterica, the collected S. enterica was cultured before PCR for sensitive detection. After cultivation for 4 h, S. enterica at 1.7 × 104 colony-forming units (CFUs)·g−1 was detected within 8 h, which included the time needed for sample preparation and detection. Furthermore, the detection of 30 CFUs·g−1 of S. enterica was possible within 12 h including 8 h for cultivation.
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Affiliation(s)
- Shunsuke Furutani
- Health Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), 1-8-31 Midorigaoka, Ikeda, Osaka 563-8577, Japan.
| | - Mitsutoshi Kajiya
- Graduate School of Engineering, Soka University, 1-236 Tangi, Hachioji, Tokyo 192-8577, Japan.
| | - Narumi Aramaki
- Graduate School of Engineering, Soka University, 1-236 Tangi, Hachioji, Tokyo 192-8577, Japan.
| | - Izumi Kubo
- Graduate School of Engineering, Soka University, 1-236 Tangi, Hachioji, Tokyo 192-8577, Japan.
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