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For: Arfin SM, Long AD, Ito ET, Tolleri L, Riehle MM, Paegle ES, Hatfield GW. Global gene expression profiling in Escherichia coli K12. The effects of integration host factor. J Biol Chem 2000;275:29672-84. [PMID: 10871608 DOI: 10.1074/jbc.m002247200] [Citation(s) in RCA: 190] [Impact Index Per Article: 7.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
Number Cited by Other Article(s)
51
Whiteford DC, Klingelhoets JJ, Bambenek MH, Dahl JL. Deletion of the histone-like protein (Hlp) from Mycobacterium smegmatis results in increased sensitivity to UV exposure, freezing and isoniazid. Microbiology (Reading) 2010;157:327-335. [DOI: 10.1099/mic.0.045518-0] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
52
Ishihama A. Prokaryotic genome regulation: multifactor promoters, multitarget regulators and hierarchic networks. FEMS Microbiol Rev 2010;34:628-45. [DOI: 10.1111/j.1574-6976.2010.00227.x] [Citation(s) in RCA: 170] [Impact Index Per Article: 12.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]  Open
53
Salmelin C, Vilpo J. expression profiling of all protein-coding genes in wild-type and three DNA repair-deficient substrains of Escherichia coli K-12. Comp Funct Genomics 2010;3:3-13. [PMID: 18628877 PMCID: PMC2447237 DOI: 10.1002/cfg.140] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2001] [Accepted: 12/06/2001] [Indexed: 11/11/2022]  Open
54
Zhang XD. Assessing the size of gene or RNAi effects in multifactor high-throughput experiments. Pharmacogenomics 2010;11:199-213. [PMID: 20136359 DOI: 10.2217/pgs.09.136] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]  Open
55
Crozat E, Winkworth C, Gaffe J, Hallin PF, Riley MA, Lenski RE, Schneider D. Parallel Genetic and Phenotypic Evolution of DNA Superhelicity in Experimental Populations of Escherichia coli. Mol Biol Evol 2010;27:2113-28. [DOI: 10.1093/molbev/msq099] [Citation(s) in RCA: 49] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]  Open
56
Bacterial nucleoid-associated proteins, nucleoid structure and gene expression. Nat Rev Microbiol 2010;8:185-95. [PMID: 20140026 DOI: 10.1038/nrmicro2261] [Citation(s) in RCA: 636] [Impact Index Per Article: 45.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
57
Jeong HS, Kim SM, Lim MS, Kim KS, Choi SH. Direct interaction between quorum-sensing regulator SmcR and RNA polymerase is mediated by integration host factor to activate vvpE encoding elastase in Vibrio vulnificus. J Biol Chem 2010;285:9357-9366. [PMID: 20110369 DOI: 10.1074/jbc.m109.089987] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]  Open
58
Toward systematic metabolic engineering based on the analysis of metabolic regulation by the integration of different levels of information. Biochem Eng J 2009. [DOI: 10.1016/j.bej.2009.06.006] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
59
Dorman CJ. Nucleoid-associated proteins and bacterial physiology. ADVANCES IN APPLIED MICROBIOLOGY 2009;67:47-64. [PMID: 19245936 DOI: 10.1016/s0065-2164(08)01002-2] [Citation(s) in RCA: 59] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
60
Sarkar T, Petrov AS, Vitko JR, Santai CT, Harvey SC, Mukerji I, Hud NV. Integration host factor (IHF) dictates the structure of polyamine-DNA condensates: implications for the role of IHF in the compaction of bacterial chromatin. Biochemistry 2009;48:667-75. [PMID: 19132923 DOI: 10.1021/bi8019965] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
61
Saier MH. The Bacterial Chromosome. Crit Rev Biochem Mol Biol 2008;43:89-134. [DOI: 10.1080/10409230801921262] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
62
Rampioni G, Leoni L, Pietrangeli B, Zennaro E. The interplay of StyR and IHF regulates substrate-dependent induction and carbon catabolite repression of styrene catabolism genes in Pseudomonas fluorescens ST. BMC Microbiol 2008;8:92. [PMID: 18547423 PMCID: PMC2442086 DOI: 10.1186/1471-2180-8-92] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2008] [Accepted: 06/11/2008] [Indexed: 12/14/2022]  Open
63
Role of global regulators and nucleotide metabolism in antibiotic tolerance in Escherichia coli. Antimicrob Agents Chemother 2008;52:2718-26. [PMID: 18519731 DOI: 10.1128/aac.00144-08] [Citation(s) in RCA: 214] [Impact Index Per Article: 13.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]  Open
64
Integration host factor positively regulates virulence gene expression in Vibrio cholerae. J Bacteriol 2008;190:4736-48. [PMID: 18456804 DOI: 10.1128/jb.00089-08] [Citation(s) in RCA: 57] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
65
Lintner RE, Mishra PK, Srivastava P, Martinez-Vaz BM, Khodursky AB, Blumenthal RM. Limited functional conservation of a global regulator among related bacterial genera: Lrp in Escherichia, Proteus and Vibrio. BMC Microbiol 2008;8:60. [PMID: 18405378 PMCID: PMC2374795 DOI: 10.1186/1471-2180-8-60] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2007] [Accepted: 04/11/2008] [Indexed: 02/03/2023]  Open
66
Benevides JM, Danahy J, Kawakami J, Thomas GJ. Mechanisms of Specific and Nonspecific Binding of Architectural Proteins in Prokaryotic Gene Regulation. Biochemistry 2008;47:3855-62. [DOI: 10.1021/bi7009426] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
67
Whole genome microarray analysis of the expression profile of Escherichia coli in response to exposure to para-nitrophenol. ACTA ACUST UNITED AC 2008. [DOI: 10.1016/s1872-2423(08)00006-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register]
68
Weidenbach K, Glöer J, Ehlers C, Sandman K, Reeve JN, Schmitz RA. Deletion of the archaeal histone in Methanosarcina mazei Gö1 results in reduced growth and genomic transcription. Mol Microbiol 2007;67:662-71. [PMID: 18086209 DOI: 10.1111/j.1365-2958.2007.06076.x] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
69
Mäurer AP, Mehlitz A, Mollenkopf HJ, Meyer TF. Gene expression profiles of Chlamydophila pneumoniae during the developmental cycle and iron depletion-mediated persistence. PLoS Pathog 2007;3:e83. [PMID: 17590080 PMCID: PMC1894823 DOI: 10.1371/journal.ppat.0030083] [Citation(s) in RCA: 68] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/03/2006] [Accepted: 04/23/2007] [Indexed: 12/01/2022]  Open
70
Mathur S, Dolo S. A new efficient statistical test for detecting variability in the gene expression data. Stat Methods Med Res 2007;17:405-19. [PMID: 17698928 DOI: 10.1177/0962280206078643] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
71
Becker NA, Kahn JD, Maher LJ. Effects of nucleoid proteins on DNA repression loop formation in Escherichia coli. Nucleic Acids Res 2007;35:3988-4000. [PMID: 17553830 PMCID: PMC1919473 DOI: 10.1093/nar/gkm419] [Citation(s) in RCA: 64] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]  Open
72
Characterization of Escherichia coli MG1655 grown in a low-shear modeled microgravity environment. BMC Microbiol 2007;7:15. [PMID: 17343762 PMCID: PMC1852313 DOI: 10.1186/1471-2180-7-15] [Citation(s) in RCA: 52] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2006] [Accepted: 03/07/2007] [Indexed: 01/24/2023]  Open
73
Widmer KW, Jesudhasan PR, Dowd SE, Pillai SD. Differential Expression of Virulence-Related Genes in A Salmonella enterica Serotype Typhimurium luxS Mutant in Response to Autoinducer AI-2 And Poultry Meat–Derived AI-2 Inhibitor. Foodborne Pathog Dis 2007;4:5-15. [PMID: 17378703 DOI: 10.1089/fpd.2006.40] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]  Open
74
Fischer HP, Freiberg C. Applications of transcriptional profiling in antibiotics discovery and development. PROGRESS IN DRUG RESEARCH. FORTSCHRITTE DER ARZNEIMITTELFORSCHUNG. PROGRES DES RECHERCHES PHARMACEUTIQUES 2007;64:21, 23-47. [PMID: 17195470 DOI: 10.1007/978-3-7643-7567-6_2] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/05/2022]
75
Johansson L, Lidén G. Transcriptome analysis of a shikimic acid producing strain of Escherichia coli W3110 grown under carbon- and phosphate-limited conditions. J Biotechnol 2006;126:528-45. [PMID: 16828913 DOI: 10.1016/j.jbiotec.2006.05.007] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2005] [Revised: 04/29/2006] [Accepted: 05/09/2006] [Indexed: 10/24/2022]
76
Veit A, Polen T, Wendisch VF. Global gene expression analysis of glucose overflow metabolism in Escherichia coli and reduction of aerobic acetate formation. Appl Microbiol Biotechnol 2006;74:406-21. [PMID: 17273855 DOI: 10.1007/s00253-006-0680-3] [Citation(s) in RCA: 74] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2006] [Revised: 09/13/2006] [Accepted: 09/13/2006] [Indexed: 11/25/2022]
77
Ehrenreich A. DNA microarray technology for the microbiologist: an overview. Appl Microbiol Biotechnol 2006;73:255-73. [PMID: 17043830 DOI: 10.1007/s00253-006-0584-2] [Citation(s) in RCA: 54] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2006] [Revised: 07/11/2006] [Accepted: 07/11/2006] [Indexed: 10/24/2022]
78
Swinger KK, Rice PA. Structure-based analysis of HU-DNA binding. J Mol Biol 2006;365:1005-16. [PMID: 17097674 PMCID: PMC1945228 DOI: 10.1016/j.jmb.2006.10.024] [Citation(s) in RCA: 78] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2006] [Revised: 09/25/2006] [Accepted: 10/07/2006] [Indexed: 11/29/2022]
79
Bao Q, Chen H, Liu Y, Yan J, Dröge P, Davey CA. A divalent metal-mediated switch controlling protein-induced DNA bending. J Mol Biol 2006;367:731-40. [PMID: 17276457 DOI: 10.1016/j.jmb.2006.09.082] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2006] [Revised: 09/26/2006] [Accepted: 09/27/2006] [Indexed: 11/24/2022]
80
O Cróinín T, Carroll RK, Kelly A, Dorman CJ. Roles for DNA supercoiling and the Fis protein in modulating expression of virulence genes during intracellular growth of Salmonella enterica serovar Typhimurium. Mol Microbiol 2006;62:869-82. [PMID: 16999831 DOI: 10.1111/j.1365-2958.2006.05416.x] [Citation(s) in RCA: 65] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
81
McLeod SM, Burrus V, Waldor MK. Requirement for Vibrio cholerae integration host factor in conjugative DNA transfer. J Bacteriol 2006;188:5704-11. [PMID: 16885438 PMCID: PMC1540070 DOI: 10.1128/jb.00564-06] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
82
Wren JD, Conway T. Meta-analysis of published transcriptional and translational fold changes reveals a preference for low-fold inductions. OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY 2006;10:15-27. [PMID: 16584315 DOI: 10.1089/omi.2006.10.15] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
83
Singh VK, Ghosh I. Kinetic modeling of tricarboxylic acid cycle and glyoxylate bypass in Mycobacterium tuberculosis, and its application to assessment of drug targets. Theor Biol Med Model 2006;3:27. [PMID: 16887020 PMCID: PMC1563452 DOI: 10.1186/1742-4682-3-27] [Citation(s) in RCA: 49] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2006] [Accepted: 08/03/2006] [Indexed: 12/01/2022]  Open
84
Singh AK, Summerfield TC, Li H, Sherman LA. The heat shock response in the cyanobacterium Synechocystis sp. Strain PCC 6803 and regulation of gene expression by HrcA and SigB. Arch Microbiol 2006;186:273-86. [PMID: 16868740 DOI: 10.1007/s00203-006-0138-0] [Citation(s) in RCA: 64] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2006] [Revised: 06/14/2006] [Accepted: 06/19/2006] [Indexed: 11/25/2022]
85
Pavlidis P, Poirazi P. Individualized markers optimize class prediction of microarray data. BMC Bioinformatics 2006;7:345. [PMID: 16842618 PMCID: PMC1569876 DOI: 10.1186/1471-2105-7-345] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2006] [Accepted: 07/14/2006] [Indexed: 11/17/2022]  Open
86
Bernardo LMD, Johansson LUM, Solera D, Skärfstad E, Shingler V. The guanosine tetraphosphate (ppGpp) alarmone, DksA and promoter affinity for RNA polymerase in regulation of sigma-dependent transcription. Mol Microbiol 2006;60:749-64. [PMID: 16629675 DOI: 10.1111/j.1365-2958.2006.05129.x] [Citation(s) in RCA: 69] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
87
Mangan MW, Lucchini S, Danino V, Cróinín TO, Hinton JCD, Dorman CJ. The integration host factor (IHF) integrates stationary-phase and virulence gene expression in Salmonella enterica serovar Typhimurium. Mol Microbiol 2006;59:1831-47. [PMID: 16553887 DOI: 10.1111/j.1365-2958.2006.05062.x] [Citation(s) in RCA: 110] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
88
Kim SY, Lee JW, Sohn IS. Comparison of various statistical methods for identifying differential gene expression in replicated microarray data. Stat Methods Med Res 2006;15:3-20. [PMID: 16477945 DOI: 10.1191/0962280206sm423oa] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
89
Fox RJ, Dimmic MW. A two-sample Bayesian t-test for microarray data. BMC Bioinformatics 2006;7:126. [PMID: 16529652 PMCID: PMC1431571 DOI: 10.1186/1471-2105-7-126] [Citation(s) in RCA: 59] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2005] [Accepted: 03/10/2006] [Indexed: 11/10/2022]  Open
90
Guédon E, Sperandio B, Pons N, Ehrlich SD, Renault P. Overall control of nitrogen metabolism in Lactococcus lactis by CodY, and possible models for CodY regulation in Firmicutes. MICROBIOLOGY-SGM 2006;151:3895-3909. [PMID: 16339935 DOI: 10.1099/mic.0.28186-0] [Citation(s) in RCA: 114] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
91
Chang DE, Conway T. Metabolic genomics. Adv Microb Physiol 2006;50:1-39. [PMID: 16221577 DOI: 10.1016/s0065-2911(05)50001-8] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
92
Vemuri GN, Aristidou AA. Metabolic engineering in the -omics era: elucidating and modulating regulatory networks. Microbiol Mol Biol Rev 2006;69:197-216. [PMID: 15944454 PMCID: PMC1197421 DOI: 10.1128/mmbr.69.2.197-216.2005] [Citation(s) in RCA: 91] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
93
Taschner NP, Yagil E, Spira B. The effect of IHF on sigmaS selectivity of the phoA and pst promoters of Escherichia coli. Arch Microbiol 2006;185:234-7. [PMID: 16404567 DOI: 10.1007/s00203-005-0082-4] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2005] [Revised: 12/13/2005] [Accepted: 12/20/2005] [Indexed: 11/29/2022]
94
Dorman CJ. DNA supercoiling and bacterial gene expression. Sci Prog 2006;89:151-66. [PMID: 17338437 PMCID: PMC10368349 DOI: 10.3184/003685006783238317] [Citation(s) in RCA: 62] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
95
Dame RT. The role of nucleoid-associated proteins in the organization and compaction of bacterial chromatin. Mol Microbiol 2005;56:858-70. [PMID: 15853876 DOI: 10.1111/j.1365-2958.2005.04598.x] [Citation(s) in RCA: 274] [Impact Index Per Article: 14.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
96
Tucker DL, Karouia F, Wang J, Luo Y, Li TB, Willson RC, Fofanov Y, Fox GE. Effect of an artificial RNA marker on gene expression in Escherichia coli. Appl Environ Microbiol 2005;71:4156-9. [PMID: 16000839 PMCID: PMC1168998 DOI: 10.1128/aem.71.7.4156-4159.2005] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
97
Mizutani O, Nojima A, Yamamoto M, Furukawa K, Fujioka T, Yamagata Y, Abe K, Nakajima T. Disordered cell integrity signaling caused by disruption of the kexB gene in Aspergillus oryzae. EUKARYOTIC CELL 2005;3:1036-48. [PMID: 15302836 PMCID: PMC500871 DOI: 10.1128/ec.3.4.1036-1048.2004] [Citation(s) in RCA: 48] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
98
Dean N, Raftery AE. Normal uniform mixture differential gene expression detection for cDNA microarrays. BMC Bioinformatics 2005;6:173. [PMID: 16011807 PMCID: PMC1181627 DOI: 10.1186/1471-2105-6-173] [Citation(s) in RCA: 60] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2005] [Accepted: 07/12/2005] [Indexed: 11/10/2022]  Open
99
Plantinga TH, van der Does C, Tomkiewicz D, van Keulen G, Konings WN, Driessen AJM. Deletion of the yiaMNO transporter genes affects the growth characteristics of Escherichia coli K-12. Microbiology (Reading) 2005;151:1683-1689. [PMID: 15870475 DOI: 10.1099/mic.0.27851-0] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
100
Riehle MM, Bennett AF, Long AD. Changes in Gene Expression Following High‐Temperature Adaptation in Experimentally Evolved Populations ofE. coli. Physiol Biochem Zool 2005;78:299-315. [PMID: 15887077 DOI: 10.1086/430035] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 07/30/2004] [Indexed: 11/03/2022]
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