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Effects of poly-γ-glutamic acid (γ-PGA) on plant growth and its distribution in a controlled plant-soil system. Sci Rep 2017; 7:6090. [PMID: 28729559 PMCID: PMC5519684 DOI: 10.1038/s41598-017-06248-2] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2016] [Accepted: 06/05/2017] [Indexed: 12/02/2022] Open
Abstract
To demonstrate the responses of plant (Pakchoi) and soil to poly-γ-glutamic acid (γ-PGA) is essential to better understand the pathways of the promotional effect of γ-PGA on plant growth. In this study, the effects of γ-PGA on soil nutrient availability, plant nutrient uptake ability, plant metabolism and its distribution in a plant-soil system were tested using labeled γ-PGA synthesized from 13C1-15N-L-glutamic acid (L-Glu). γ-PGA significantly improved plant uptake of nitrogen (N), phosphorus (P), and potassium (K) and hence increased plant biomass. γ-PGA greatly strengthened the plant nutrient uptake capacity through enhancing both root biomass and activity. γ-PGA affected carbon (C) and N metabolism in plant which was evidenced with increased soluble sugar contents and decreased nitrate and free amino acids contents. About 26.5% of the γ-PGA-N uptake during the first 24 h, after γ-PGA application, was in the form of intact organic molecular. At plant harvest, 29.7% and 59.4% of γ-PGA-15N was recovered in plant and soil, respectively, with a 5.64% of plant N nutrition being derived from γ-PGA-N. The improved plant nutrient uptake capacity and soil nutrient availability by γ-PGA may partly explain the promotional effect of γ-PGA, however, the underlying reason may be closely related to L-Glu.
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52
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Selvaraj MG, Valencia MO, Ogawa S, Lu Y, Wu L, Downs C, Skinner W, Lu Z, Kridl JC, Ishitani M, van Boxtel J. Development and field performance of nitrogen use efficient rice lines for Africa. PLANT BIOTECHNOLOGY JOURNAL 2017; 15:775-787. [PMID: 27889933 PMCID: PMC5425388 DOI: 10.1111/pbi.12675] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/07/2015] [Revised: 11/17/2016] [Accepted: 11/19/2016] [Indexed: 05/06/2023]
Abstract
Nitrogen (N) fertilizers are a major input cost in rice production, and its excess application leads to major environmental pollution. Development of rice varieties with improved nitrogen use efficiency (NUE) is essential for sustainable agriculture. Here, we report the results of field evaluations of marker-free transgenic NERICA4 (New Rice for Africa 4) rice lines overexpressing barley alanine amino transferase (HvAlaAT) under the control of a rice stress-inducible promoter (pOsAnt1). Field evaluations over three growing seasons and two rice growing ecologies (lowland and upland) revealed that grain yield of pOsAnt1:HvAlaAT transgenic events was significantly higher than sibling nulls and wild-type controls under different N application rates. Our field results clearly demonstrated that this genetic modification can significantly increase the dry biomass and grain yield compared to controls under limited N supply. Increased yield in transgenic events was correlated with increased tiller and panicle number in the field, and evidence of early establishment of a vigorous root system in hydroponic growth. Our results suggest that expression of the HvAlaAT gene can improve NUE in rice without causing undesirable growth phenotypes. The NUE technology described in this article has the potential to significantly reduce the need for N fertilizer and simultaneously improve food security, augment farm economics and mitigate greenhouse gas emissions from the rice ecosystem.
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Affiliation(s)
| | - Milton Orlando Valencia
- International Center for Tropical Agriculture (CIAT)CaliColombia
- Faculty of Agriculture ScienceNational University of ColombiaPalmiraColombia
| | - Satoshi Ogawa
- International Center for Tropical Agriculture (CIAT)CaliColombia
- Japan Society for the Promotion of Science Postdoctoral FellowGraduate School of Agricultural and Life ScienceThe University of TokyoTokyoJapan
| | | | | | | | | | | | | | - Manabu Ishitani
- International Center for Tropical Agriculture (CIAT)CaliColombia
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Walch-Liu P, Meyer RC, Altmann T, Forde BG. QTL analysis of the developmental response to L-glutamate in Arabidopsis roots and its genotype-by-environment interactions. JOURNAL OF EXPERIMENTAL BOTANY 2017; 68:2919-2931. [PMID: 28449076 PMCID: PMC5853333 DOI: 10.1093/jxb/erx132] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/19/2016] [Accepted: 03/28/2017] [Indexed: 05/28/2023]
Abstract
Primary root growth in Arabidopsis and a number of other species has previously been shown to be remarkably sensitive to the presence of external glutamate, with glutamate signalling eliciting major changes in root architecture. Using two recombinant inbred lines from reciprocal crosses between Arabidopsis accessions C24 and Col-0, we have identified one large-effect quantitative trait locus (QTL), GluS1, and two minor QTLs, GluS2 and GluS3, which together accounted for 41% of the phenotypic variance in glutamate sensitivity. The presence of the GluS1 locus on chromosome 3 was confirmed using a set of C24/Col-0 isogenic lines. GluS1 was mapped to an interval between genes At3g44830-At3g46880. When QTL mapping was repeated under a range of environmental conditions, including temperature, shading and nitrate supply, a strong genotype-by-environment interaction in the controls for the glutamate response was identified. Major differences in the loci controlling this trait were found under different environmental conditions. Here we present evidence for the existence of loci on chromosomes 1 and 5 epistatically controlling the response of the GluS1 locus to variations in ambient temperature, between 20°C and 26°C. In addition, a locus on the long arm of chromosome 1 was found to play a major role in controlling the ability of external nitrate signals to antagonize the glutamate effect. We conclude that there are multiple loci controlling natural variation in glutamate sensitivity in Arabidopsis roots and that epistatic interactions play an important role in modulating glutamate sensitivity in response to changes in environmental conditions.
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Affiliation(s)
- Pia Walch-Liu
- Lancaster Environment Centre, Lancaster University, Lancaster, UK
| | - Rhonda C Meyer
- Leibniz Institute of Plant Genetics and Crop Plant Research, Department of Molecular Genetics, Gatersleben, Germany
| | - Thomas Altmann
- Leibniz Institute of Plant Genetics and Crop Plant Research, Department of Molecular Genetics, Gatersleben, Germany
| | - Brian G Forde
- Lancaster Environment Centre, Lancaster University, Lancaster, UK
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54
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Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature 2017; 545:311-316. [PMID: 28489820 DOI: 10.1038/nature22077] [Citation(s) in RCA: 327] [Impact Index Per Article: 46.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2016] [Accepted: 03/16/2017] [Indexed: 12/17/2022]
Abstract
Nutrient signalling integrates and coordinates gene expression, metabolism and growth. However, its primary molecular mechanisms remain incompletely understood in plants and animals. Here we report unique Ca2+ signalling triggered by nitrate with live imaging of an ultrasensitive biosensor in Arabidopsis leaves and roots. A nitrate-sensitized and targeted functional genomic screen identifies subgroup III Ca2+-sensor protein kinases (CPKs) as master regulators that orchestrate primary nitrate responses. A chemical switch with the engineered mutant CPK10(M141G) circumvents embryo lethality and enables conditional analyses of cpk10 cpk30 cpk32 triple mutants to define comprehensive nitrate-associated regulatory and developmental programs. Nitrate-coupled CPK signalling phosphorylates conserved NIN-LIKE PROTEIN (NLP) transcription factors to specify the reprogramming of gene sets for downstream transcription factors, transporters, nitrogen assimilation, carbon/nitrogen metabolism, redox, signalling, hormones and proliferation. Conditional cpk10 cpk30 cpk32 and nlp7 mutants similarly impair nitrate-stimulated system-wide shoot growth and root establishment. The nutrient-coupled Ca2+ signalling network integrates transcriptome and cellular metabolism with shoot-root coordination and developmental plasticity in shaping organ biomass and architecture.
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55
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Abstract
The primary processes that contribute to the efficient capture of soil nitrate are the development of a root system that effectively explores the soil and the expression of high-affinity nitrate uptake systems in those roots. Both these processes are highly regulated to take into account the availability and distribution of external nitrate pools and the endogenous N status of the plant. While significant progress has been made in elucidating the early steps in sensing and responding to external nitrate, there is much less clarity about how the plant monitors its N status. This review specifically addresses the questions of what N compounds are sensed and in which part of the plant, as well as the identity of the signalling pathways responsible for their detection. Candidates that are considered for the role of N sensory systems include the target of rapamycin (TOR) signalling pathway, the general control non-derepressible 2 (GCN2) pathway, the plastidic PII-dependent pathway, and the family of glutamate-like receptors (GLRs). However, despite significant recent progress in elucidating the function and mode of action of these signalling systems, there is still much uncertainty about the extent to which they contribute to the process by which plants monitor their N status. The possibility is discussed that the large GLR family of Ca2+ channels, which are gated by a wide range of different amino acids and expressed throughout the plant, could act as amino acid sensors upstream of a Ca2+-regulated signalling pathway, such as the TOR pathway, to regulate the plant's response to changes in N status.
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Affiliation(s)
- Lucas Gent
- Lancaster Environment Centre, Lancaster University, Lancaster LA1 4YQ, UK
| | - Brian G Forde
- Lancaster Environment Centre, Lancaster University, Lancaster LA1 4YQ, UK
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56
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Hachiya T, Sakakibara H. Interactions between nitrate and ammonium in their uptake, allocation, assimilation, and signaling in plants. JOURNAL OF EXPERIMENTAL BOTANY 2017; 68:2501-2512. [PMID: 28007951 DOI: 10.1093/jxb/erw449] [Citation(s) in RCA: 42] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
Nitrogen (N) availability is a major factor determining plant growth and productivity. Plants acquire inorganic N from the soil, mainly in the form of nitrate and ammonium. To date, researchers have focused on these N sources, and demonstrated that plants exhibit elaborate responses at both physiological and morphological levels. Mixtures of nitrate and ammonium are beneficial in terms of plant growth, as compared to nitrate or ammonium alone, and therefore synergistic responses to both N sources are predicted at different steps ranging from acquisition to assimilation. In this review, we summarize interactions between nitrate and ammonium with respect to uptake, allocation, assimilation, and signaling. Given that cultivated land often contains both nitrate and ammonium, a better understanding of the synergism between these N sources should help to identify targets with the potential to improve crop productivity.
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Affiliation(s)
- Takushi Hachiya
- Department of Biological Mechanisms and Functions, Graduate School of Bioagricultural Sciences, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi 464-8601, Japan
- Institute for Advanced Research, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi 464-8602, Japan
| | - Hitoshi Sakakibara
- Department of Biological Mechanisms and Functions, Graduate School of Bioagricultural Sciences, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi 464-8601, Japan
- RIKEN Center for Sustainable Resource Science, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
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57
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Gulyás Z, Simon-Sarkadi L, Badics E, Novák A, Mednyánszky Z, Szalai G, Galiba G, Kocsy G. Redox regulation of free amino acid levels in Arabidopsis thaliana. PHYSIOLOGIA PLANTARUM 2017; 159:264-276. [PMID: 27605256 DOI: 10.1111/ppl.12510] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/10/2016] [Revised: 07/18/2016] [Accepted: 08/20/2016] [Indexed: 06/06/2023]
Abstract
Abiotic stresses induce oxidative stress, which modifies the level of several metabolites including amino acids. The redox control of free amino acid profile was monitored in wild-type and ascorbate or glutathione deficient mutant Arabidopsis thaliana plants before and after hydroponic treatment with various redox agents. Both mutations and treatments modified the size and redox state of the ascorbate (AsA) and/or glutathione (GSH) pools. The total free amino acid content was increased by AsA, GSH and H2 O2 in all three genotypes and a very large (threefold) increase was observed in the GSH-deficient pad2-1 mutant after GSH treatment compared with the untreated wild-type plants. Addition of GSH reduced the ratio of amino acids belonging to the glutamate family on a large scale and increased the relative amount of non-proteinogenic amino acids. The latter change was because of the large increase in the content of alpha-aminoadipate, an inhibitor of glutamatic acid (Glu) transport. Most of the treatments increased the proline (Pro) content, which effect was due to the activation of genes involved in Pro synthesis. Although all studied redox compounds influenced the amount of free amino acids and a mostly positive, very close (r > 0.9) correlation exists between these parameters, a special regulatory role of GSH could be presumed due to its more powerful effect. This may originate from the thiol/disulphide conversion or (de)glutathionylation of enzymes participating in the amino acid metabolism.
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Affiliation(s)
- Zsolt Gulyás
- Agricultural Institute, Centre for Agricultural Research, Hungarian Academy of Sciences, Martonvásár, H-2462, Hungary
| | - Livia Simon-Sarkadi
- Department of Food Chemistry and Nutrition, Szent István University, Budapest, H-1118, Hungary
| | - Eszter Badics
- Agricultural Institute, Centre for Agricultural Research, Hungarian Academy of Sciences, Martonvásár, H-2462, Hungary
| | - Aliz Novák
- Agricultural Institute, Centre for Agricultural Research, Hungarian Academy of Sciences, Martonvásár, H-2462, Hungary
| | - Zsuzsanna Mednyánszky
- Department of Food Chemistry and Nutrition, Szent István University, Budapest, H-1118, Hungary
| | - Gabriella Szalai
- Agricultural Institute, Centre for Agricultural Research, Hungarian Academy of Sciences, Martonvásár, H-2462, Hungary
| | - Gábor Galiba
- Agricultural Institute, Centre for Agricultural Research, Hungarian Academy of Sciences, Martonvásár, H-2462, Hungary
- Festetics Doctoral School, Georgikon Faculty, University of Pannonia, Keszthely, H-8360, Hungary
| | - Gábor Kocsy
- Agricultural Institute, Centre for Agricultural Research, Hungarian Academy of Sciences, Martonvásár, H-2462, Hungary
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Kan CC, Chung TY, Wu HY, Juo YA, Hsieh MH. Exogenous glutamate rapidly induces the expression of genes involved in metabolism and defense responses in rice roots. BMC Genomics 2017; 18:186. [PMID: 28212609 PMCID: PMC5316172 DOI: 10.1186/s12864-017-3588-7] [Citation(s) in RCA: 48] [Impact Index Per Article: 6.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2016] [Accepted: 02/13/2017] [Indexed: 11/10/2022] Open
Abstract
Background Glutamate is an active amino acid. In addition to protein synthesis and metabolism, increasing evidence indicates that glutamate may also function as a signaling molecule in plants. Still, little is known about the nutritional role of glutamate and genes that are directly regulated by glutamate in rice. Results Exogenous glutamate could serve as a nitrogen nutrient to support the growth of rice seedlings, but it was not as effective as ammonium nitrate or glutamine. In nitrogen-starved rice seedlings, glutamate was the most abundant free amino acid and feeding of glutamate rapidly and significantly increased the endogenous levels of glutamine, but not glutamate. These results indicated that glutamate was quickly metabolized and converted to the other nitrogen-containing compounds in rice. Transcriptome analysis revealed that at least 122 genes involved in metabolism, transport, signal transduction, and stress responses in the roots were rapidly induced by 2.5 mM glutamate within 30 min. Many of these genes were also up-regulated by glutamine and ammonium nitrate. Still, we were able to identify some transcription factor, kinase/phosphatase, and elicitor-responsive genes that were specifically or preferentially induced by glutamate. Conclusions Glutamate is a functional amino acid that plays important roles in plant nutrition, metabolism, and signal transduction. The rapid and specific induction of transcription factor, kinase/phosphatase and elicitor-responsive genes suggests that glutamate may efficiently amplify its signal and interact with other signaling pathways to regulate metabolism, growth and defense responses in rice. Electronic supplementary material The online version of this article (doi:10.1186/s12864-017-3588-7) contains supplementary material, which is available to authorized users.
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Affiliation(s)
- Chia-Cheng Kan
- Institute of Plant and Microbial Biology, Academia Sinica, Taipei, Taiwan
| | - Tsui-Yun Chung
- Institute of Plant and Microbial Biology, Academia Sinica, Taipei, Taiwan
| | - Hsin-Yu Wu
- Institute of Plant and Microbial Biology, Academia Sinica, Taipei, Taiwan
| | - Yan-An Juo
- Institute of Plant and Microbial Biology, Academia Sinica, Taipei, Taiwan
| | - Ming-Hsiun Hsieh
- Institute of Plant and Microbial Biology, Academia Sinica, Taipei, Taiwan.
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Casarrubia S, Sapienza S, Fritz H, Daghino S, Rosenkranz M, Schnitzler JP, Martin F, Perotto S, Martino E. Ecologically Different Fungi Affect Arabidopsis Development: Contribution of Soluble and Volatile Compounds. PLoS One 2016; 11:e0168236. [PMID: 27973595 PMCID: PMC5156394 DOI: 10.1371/journal.pone.0168236] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2016] [Accepted: 11/28/2016] [Indexed: 01/11/2023] Open
Abstract
Plant growth and development can be influenced by mutualistic and non-mutualistic microorganisms. We investigated the ability of the ericoid endomycorrhizal fungus Oidiodendron maius to influence growth and development of the non-host plant Arabidopsis thaliana. Different experimental setups (non-compartmented and compartmented co-culture plates) were used to investigate the influence of both soluble and volatile fungal molecules on the plant phenotype. O. maius promoted growth of A. thaliana in all experimental setups. In addition, a peculiar clumped root phenotype, characterized by shortening of the primary root and by an increase of lateral root length and number, was observed in A. thaliana only in the non-compartmented plates, suggesting that soluble diffusible molecules are responsible for this root morphology. Fungal auxin does not seem to be involved in plant growth promotion and in the clumped root phenotype because co-cultivation with O. maius did not change auxin accumulation in plant tissues, as assessed in plants carrying the DR5::GUS reporter construct. In addition, no correlation between the amount of fungal auxin produced and the plant root phenotype was observed in an O. maius mutant unable to induce the clumped root phenotype in A. thaliana. Addition of active charcoal, a VOC absorbant, in the compartmented plates did not modify plant growth promotion, suggesting that VOCs are not involved in this phenomenon. The low VOCs emission measured for O. maius further corroborated this hypothesis. By contrast, the addition of CO2 traps in the compartmented plates drastically reduced plant growth, suggesting involvement of fungal CO2 in plant growth promotion. Other mycorrhizal fungi, as well as a saprotrophic and a pathogenic fungus, were also tested with the same experimental setups. In the non-compartmented plates, most fungi promoted A. thaliana growth and some could induce the clumped root phenotype. In the compartmented plate experiments, a general induction of plant growth was observed for most other fungi, especially those producing higher biomass, further strengthening the role of a nonspecific mechanism, such as CO2 emission.
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Affiliation(s)
- Salvatore Casarrubia
- Department of Life Sciences and Systems Biology, University of Turin, Turin, Italy
| | - Sara Sapienza
- Department of Life Sciences and Systems Biology, University of Turin, Turin, Italy
| | - Héma Fritz
- INRA-Nancy and Lorraine University, Lab of Excellence ARBRE, Unité Mixte de Recherche 1136, Champenoux, France
| | - Stefania Daghino
- Department of Life Sciences and Systems Biology, University of Turin, Turin, Italy
| | - Maaria Rosenkranz
- Research Unit Environmental Simulation, Institute of Biochemical Plant Pathology, Helmholtz Zentrum München—German Research Center for Environmental Health (GmbH), Neuherberg, Germany
| | - Jörg-Peter Schnitzler
- Research Unit Environmental Simulation, Institute of Biochemical Plant Pathology, Helmholtz Zentrum München—German Research Center for Environmental Health (GmbH), Neuherberg, Germany
| | - Francis Martin
- INRA-Nancy and Lorraine University, Lab of Excellence ARBRE, Unité Mixte de Recherche 1136, Champenoux, France
| | - Silvia Perotto
- Department of Life Sciences and Systems Biology, University of Turin, Turin, Italy
| | - Elena Martino
- Department of Life Sciences and Systems Biology, University of Turin, Turin, Italy
- INRA-Nancy and Lorraine University, Lab of Excellence ARBRE, Unité Mixte de Recherche 1136, Champenoux, France
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60
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Ni J, Yu Z, Du G, Zhang Y, Taylor JL, Shen C, Xu J, Liu X, Wang Y, Wu Y. Heterologous Expression and Functional Analysis of Rice GLUTAMATE RECEPTOR-LIKE Family Indicates its Role in Glutamate Triggered Calcium Flux in Rice Roots. RICE (NEW YORK, N.Y.) 2016; 9:9. [PMID: 26956369 PMCID: PMC4783324 DOI: 10.1186/s12284-016-0081-x] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/21/2015] [Accepted: 02/20/2016] [Indexed: 05/19/2023]
Abstract
BACKGROUND Tremendous progress has been made in understanding the functions of the GLUTAMATE RECEPTOR-LIKE (GLR) family in Arabidopsis. Still, the functions of OsGLRs in rice, especially the ion channel activities, are largely unknown. RESULTS Using the aequorin-based luminescence imaging system, we screened the specificity of amino acids involved in the induction of Ca(2+) flux in rice roots. Of all the amino acids tested, glutamate (Glu) was the only one to trigger Ca(2+) flux significantly in rice roots. Detailed analysis showed a dose response of Ca(2+) increase to different concentrations of Glu. In addition, the Ca(2+) spike response to Glu was rapid, within 20 s after the application. A desensitization assay and pharmacological tests showed that the Glu-triggered Ca(2+) flux is mediated by OsGLRs. Whole genome analysis identified 13 OsGLR genes in rice, and these genes have various expression patterns in different tissues. Subcellular localization studies showed that all the OsGLRs examined are likely localized to the plasma membrane. Bacteria growth assays showed that at least OsGLR2.1 and OsGLR3.2 have the potential to mediate ion uptake in bacteria. Further analysis using Fura-2-based Ca(2+) imaging revealed a Glu-triggered Ca(2+) increase in OsGLR2.1-expressing human embryonic kidney (HEK) cells. CONCLUSIONS Our work provides a molecular basis for investigating mechanisms of Glu-triggered Ca(2+) flux in rice.
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Affiliation(s)
- Jun Ni
- />College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou, 310018 China
| | - Zhiming Yu
- />College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou, 310018 China
| | - Guankui Du
- />Department of Biochemistry, Hainan Medical College, Haikou, 571199 China
| | - Yanyan Zhang
- />College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou, 310018 China
| | - Jemma L. Taylor
- />School of Life Sciences, Gibbet Hill Campus, University of Warwick, Coventry, CV4 7AL UK
| | - Chenjia Shen
- />College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou, 310018 China
| | - Jing Xu
- />College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou, 310018 China
| | - Xunyan Liu
- />College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou, 310018 China
| | - Yifeng Wang
- />State Key Laboratory of Rice Biology, China National Rice Research Institute, Chinese Academy of Agricultural Sciences, Hangzhou, 311400 China
| | - Yunrong Wu
- />State Key Laboratory of Plant Physiology and Biochemistry, College of Life Science, Zhejiang University, Hangzhou, 310058 China
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61
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Gilliham M, Tyerman SD. Linking Metabolism to Membrane Signaling: The GABA-Malate Connection. TRENDS IN PLANT SCIENCE 2016; 21:295-301. [PMID: 26723562 DOI: 10.1016/j.tplants.2015.11.011] [Citation(s) in RCA: 72] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/02/2015] [Revised: 11/05/2015] [Accepted: 11/23/2015] [Indexed: 05/05/2023]
Abstract
γ-Aminobutyric acid (GABA) concentration increases rapidly in tissues when plants encounter abiotic or biotic stress, and GABA manipulation affects growth. This, coupled to GABA's well-described role as a neurotransmitter in mammals, led to over a decade of speculation that GABA is a signal in plants. The discovery of GABA-regulated anion channels in plants provides compelling mechanistic proof that GABA is a legitimate plant-signaling molecule. Here we examine research avenues unlocked by this finding and propose that these plant 'GABA receptors' possess novel properties ideally suited to translating changes in metabolic status into physiological responses. Specifically, we suggest they have a role in signaling altered cycling of tricarboxylic acid (TCA) intermediates during stress via eliciting changes in electrical potential differences across membranes.
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Affiliation(s)
- Matthew Gilliham
- Plant Transport and Signalling Lab, ARC Centre of Excellence in Plant Energy Biology and School of Agriculture, Food, and Wine, University of Adelaide, Waite Research Precinct, PMB1, Glen Osmond, SA 5064, Australia.
| | - Stephen D Tyerman
- Plant Transport and Signalling Lab, ARC Centre of Excellence in Plant Energy Biology and School of Agriculture, Food, and Wine, University of Adelaide, Waite Research Precinct, PMB1, Glen Osmond, SA 5064, Australia
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62
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Araya T, Kubo T, von Wirén N, Takahashi H. Statistical modeling of nitrogen-dependent modulation of root system architecture in Arabidopsis thaliana. JOURNAL OF INTEGRATIVE PLANT BIOLOGY 2016; 58:254-265. [PMID: 26425993 DOI: 10.1111/jipb.12433] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/14/2015] [Accepted: 09/28/2015] [Indexed: 06/05/2023]
Abstract
Plant root development is strongly affected by nutrient availability. Despite the importance of structure and function of roots in nutrient acquisition, statistical modeling approaches to evaluate dynamic and temporal modulations of root system architecture in response to nutrient availability have remained as widely open and exploratory areas in root biology. In this study, we developed a statistical modeling approach to investigate modulations of root system architecture in response to nitrogen availability. Mathematical models were designed for quantitative assessment of root growth and root branching phenotypes and their dynamic relationships based on hierarchical configuration of primary and lateral roots formulating the fishbone-shaped root system architecture in Arabidopsis thaliana. Time-series datasets reporting dynamic changes in root developmental traits on different nitrate or ammonium concentrations were generated for statistical analyses. Regression analyses unraveled key parameters associated with: (i) inhibition of primary root growth under nitrogen limitation or on ammonium; (ii) rapid progression of lateral root emergence in response to ammonium; and (iii) inhibition of lateral root elongation in the presence of excess nitrate or ammonium. This study provides a statistical framework for interpreting dynamic modulation of root system architecture, supported by meta-analysis of datasets displaying morphological responses of roots to diverse nitrogen supplies.
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Affiliation(s)
- Takao Araya
- Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI 48824, USA
- Molecular Plant Nutrition, Leibniz Institute of Plant Genetics and Crop Plant Research, D-06466 Gatersleben, Germany
| | - Takuya Kubo
- Graduate School of Environmental Science, Hokkaido University, Sapporo 060-0810, Japan
| | - Nicolaus von Wirén
- Molecular Plant Nutrition, Leibniz Institute of Plant Genetics and Crop Plant Research, D-06466 Gatersleben, Germany
| | - Hideki Takahashi
- Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI 48824, USA
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63
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Zermiani M, Zonin E, Nonis A, Begheldo M, Ceccato L, Vezzaro A, Baldan B, Trentin A, Masi A, Pegoraro M, Fadanelli L, Teale W, Palme K, Quintieri L, Ruperti B. Ethylene negatively regulates transcript abundance of ROP-GAP rheostat-encoding genes and affects apoplastic reactive oxygen species homeostasis in epicarps of cold stored apple fruits. JOURNAL OF EXPERIMENTAL BOTANY 2015; 66:7255-70. [PMID: 26428066 PMCID: PMC4765793 DOI: 10.1093/jxb/erv422] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/07/2023]
Abstract
Apple (Malus×domestica Borkh) fruits are stored for long periods of time at low temperatures (1 °C) leading to the occurrence of physiological disorders. 'Superficial scald' of Granny Smith apples, an economically important ethylene-dependent disorder, was used as a model to study relationships among ethylene action, the regulation of the ROP-GAP rheostat, and maintenance of H2O2 homeostasis in fruits during prolonged cold exposure. The ROP-GAP rheostat is a key module for adaptation to low oxygen in Arabidopsis through Respiratory Burst NADPH Oxidase Homologs (RBOH)-mediated and ROP GTPase-dependent regulation of reactive oxygen species (ROS) homeostasis. Here, it was shown that the transcriptional expression of several components of the apple ROP-GAP machinery, including genes encoding RBOHs, ROPs, and their ancillary proteins ROP-GEFs and ROP-GAPs, is coordinately and negatively regulated by ethylene in conjunction with the progressive impairment of apoplastic H2O2 homeostatic levels. RNA sequencing analyses showed that several components of the known ROP- and ROS-associated transcriptional networks are regulated along with the ROP-GAP rheostat in response to ethylene perception. These findings may extend the role of the ROP-GAP rheostat beyond hypoxic responses and suggest that it may be a functional regulatory node involved in the integration of ethylene and ROS signalling pathways in abiotic stress.
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Affiliation(s)
- Monica Zermiani
- Department of Agronomy, Food, Natural resources, Animals and Environment (DAFNAE), University of Padova, 35020 Legnaro, Italy
| | - Elisabetta Zonin
- Department of Agronomy, Food, Natural resources, Animals and Environment (DAFNAE), University of Padova, 35020 Legnaro, Italy
| | - Alberto Nonis
- Department of Agronomy, Food, Natural resources, Animals and Environment (DAFNAE), University of Padova, 35020 Legnaro, Italy
| | - Maura Begheldo
- Department of Agronomy, Food, Natural resources, Animals and Environment (DAFNAE), University of Padova, 35020 Legnaro, Italy
| | - Luca Ceccato
- Department of Agronomy, Food, Natural resources, Animals and Environment (DAFNAE), University of Padova, 35020 Legnaro, Italy
| | - Alice Vezzaro
- Department of Agronomy, Food, Natural resources, Animals and Environment (DAFNAE), University of Padova, 35020 Legnaro, Italy
| | - Barbara Baldan
- Department of Biology, University of Padova, 35121 Padova, Italy
| | - Annarita Trentin
- Department of Agronomy, Food, Natural resources, Animals and Environment (DAFNAE), University of Padova, 35020 Legnaro, Italy
| | - Antonio Masi
- Department of Agronomy, Food, Natural resources, Animals and Environment (DAFNAE), University of Padova, 35020 Legnaro, Italy
| | - Marco Pegoraro
- Department of Agronomy, Food, Natural resources, Animals and Environment (DAFNAE), University of Padova, 35020 Legnaro, Italy
| | - Livio Fadanelli
- Edmund Mach Foundation, San Michele all'Adige, 38123 Trento, Italy
| | - William Teale
- Institute of Biology II/Molecular Plant Physiology, Faculty of Biology, Albert-Ludwigs-University of Freiburg, D-79104 Freiburg, Germany
| | - Klaus Palme
- Institute of Biology II/Molecular Plant Physiology, Faculty of Biology, Albert-Ludwigs-University of Freiburg, D-79104 Freiburg, Germany Centre for Biological Systems Analysis, Albert-Ludwigs-University of Freiburg, D-79104 Freiburg, Germany Freiburg Institute for Advanced Sciences (FRIAS), Albert-Ludwigs-University of Freiburg, D-79104 Freiburg, Germany Centre for Biological Signalling Studies (bioss), Albert-Ludwigs-University of Freiburg, D-79104 Freiburg, Germany Freiburg Initiative for Systems Biology (FRISYS), Albert-Ludwigs-University of Freiburg, D-79104 Freiburg, Germany
| | - Luigi Quintieri
- Department of Pharmaceutical and Pharmacological Sciences, University of Padova, Padova, 35131 Padova, Italy
| | - Benedetto Ruperti
- Department of Agronomy, Food, Natural resources, Animals and Environment (DAFNAE), University of Padova, 35020 Legnaro, Italy
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Silva LS, Seabra AR, Leitão JN, Carvalho HG. Possible role of glutamine synthetase of the prokaryotic type (GSI-like) in nitrogen signaling in Medicago truncatula. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2015; 240:98-108. [PMID: 26475191 DOI: 10.1016/j.plantsci.2015.09.001] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/08/2015] [Revised: 08/31/2015] [Accepted: 09/01/2015] [Indexed: 06/05/2023]
Abstract
Genes containing domains related to glutamine synthetase of the prokaryotic type (GSI-like) are widespread in higher plants, but their function is currently unknown. To gain insights into the possible role of GSI-like proteins, we characterized the GSI-like gene family of Medicago truncatula and investigated the functionality of the encoded proteins. M. truncatula contains two-expressed GSI-like genes, MtGSIa and MtGSIb, encoding polypeptides of 454 and 453 amino acids, respectively. Heterologous complementation assays of a bacterial glnA mutant indicate that the proteins are not catalytically functional for glutamine synthesis. Gene expression was investigated by qRT-PCR and western blot analysis in different organs of the plant and under different nitrogen (N) regimes, revealing that both genes are preferentially expressed in roots and root nodules, and that their expression is influenced by the N-status of the plant. Analysis of transgenic plants expressing MtGSI-like-promoter-gusA fusion, indicate that the two genes are strongly expressed in the root pericycle, and interestingly, the expression is enhanced at the sites of nodule emergence being particularly strong in specific cells located in front of the protoxylem poles. Taken together, the results presented here support a role of GSI-like proteins in N sensing and/or signaling, probably operating at the interface between perception of the N-status and the developmental processes underlying both root nodule and lateral root formation. This study indicates that GSI-like genes may represent a novel class of molecular players of the N-mediated signaling events.
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Affiliation(s)
- Liliana S Silva
- Instituto de Biologia Molecular e Celular da Universidade do Porto, Rua do Campo Alegre, 823, 4150-180 Porto, Portugal; Departamento de Biologia, Faculdade de Ciências, Universidade do Porto, Portugal
| | - Ana R Seabra
- Instituto de Biologia Molecular e Celular da Universidade do Porto, Rua do Campo Alegre, 823, 4150-180 Porto, Portugal
| | - José N Leitão
- Instituto de Biologia Molecular e Celular da Universidade do Porto, Rua do Campo Alegre, 823, 4150-180 Porto, Portugal
| | - Helena G Carvalho
- Instituto de Biologia Molecular e Celular da Universidade do Porto, Rua do Campo Alegre, 823, 4150-180 Porto, Portugal.
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Moroz LL, Kohn AB. Unbiased View of Synaptic and Neuronal Gene Complement in Ctenophores: Are There Pan-neuronal and Pan-synaptic Genes across Metazoa? Integr Comp Biol 2015; 55:1028-49. [PMID: 26454853 DOI: 10.1093/icb/icv104] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023] Open
Abstract
Hypotheses of origins and evolution of neurons and synapses are controversial, mostly due to limited comparative data. Here, we investigated the genome-wide distribution of the bilaterian "synaptic" and "neuronal" protein-coding genes in non-bilaterian basal metazoans (Ctenophora, Porifera, Placozoa, and Cnidaria). First, there are no recognized genes uniquely expressed in neurons across all metazoan lineages. None of the so-called pan-neuronal genes such as embryonic lethal abnormal vision (ELAV), Musashi, or Neuroglobin are expressed exclusively in neurons of the ctenophore Pleurobrachia. Second, our comparative analysis of about 200 genes encoding canonical presynaptic and postsynaptic proteins in bilaterians suggests that there are no true "pan-synaptic" genes or genes uniquely and specifically attributed to all classes of synapses. The majority of these genes encode receptive and secretory complexes in a broad spectrum of eukaryotes. Trichoplax (Placozoa) an organism without neurons and synapses has more orthologs of bilaterian synapse-related/neuron-related genes than do ctenophores-the group with well-developed neuronal and synaptic organization. Third, the majority of genes encoding ion channels and ionotropic receptors are broadly expressed in unicellular eukaryotes and non-neuronal tissues in metazoans. Therefore, they cannot be viewed as neuronal markers. Nevertheless, the co-expression of multiple types of ion channels and receptors does correlate with the presence of neural and synaptic organization. As an illustrative example, the ctenophore genomes encode a greater diversity of ion channels and ionotropic receptors compared with the genomes of the placozoan Trichoplax and the demosponge Amphimedon. Surprisingly, both placozoans and sponges have a similar number of orthologs of "synaptic" proteins as we identified in the genomes of two ctenophores. Ctenophores have a distinct synaptic organization compared with other animals. Our analysis of transcriptomes from 10 different ctenophores did not detect recognized orthologs of synthetic enzymes encoding several classical, low-molecular-weight (neuro)transmitters; glutamate signaling machinery is one of the few exceptions. Novel peptidergic signaling molecules were predicted for ctenophores, together with the diversity of putative receptors including SCNN1/amiloride-sensitive sodium channel-like channels, many of which could be examples of a lineage-specific expansion within this group. In summary, our analysis supports the hypothesis of independent evolution of neurons and, as corollary, a parallel evolution of synapses. We suggest that the formation of synaptic machinery might occur more than once over 600 million years of animal evolution.
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Affiliation(s)
- Leonid L Moroz
- *The Whitney Laboratory for Marine Bioscience, University of Florida, 9505 Ocean Shore Blvd, St Augustine, FL 32080, USA; Department of Neuroscience, McKnight Brain Institute and Whitney Laboratory for Marine Biosciences, University of Florida, Gainesville, FL 32611, USA
| | - Andrea B Kohn
- *The Whitney Laboratory for Marine Bioscience, University of Florida, 9505 Ocean Shore Blvd, St Augustine, FL 32080, USA
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Obertello M, Shrivastava S, Katari MS, Coruzzi GM. Cross-Species Network Analysis Uncovers Conserved Nitrogen-Regulated Network Modules in Rice. PLANT PHYSIOLOGY 2015; 168:1830-43. [PMID: 26045464 PMCID: PMC4528727 DOI: 10.1104/pp.114.255877] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/17/2014] [Accepted: 06/01/2015] [Indexed: 05/04/2023]
Abstract
In this study, we used a cross-species network approach to uncover nitrogen (N)-regulated network modules conserved across a model and a crop species. By translating gene network knowledge from the data-rich model Arabidopsis (Arabidopsis thaliana) to a crop, rice (Oryza sativa), we identified evolutionarily conserved N-regulatory modules as targets for translational studies to improve N use efficiency in transgenic plants. To uncover such conserved N-regulatory network modules, we first generated an N-regulatory network based solely on rice transcriptome and gene interaction data. Next, we enhanced the network knowledge in the rice N-regulatory network using transcriptome and gene interaction data from Arabidopsis and new data from Arabidopsis and rice plants exposed to the same N treatment conditions. This cross-species network analysis uncovered a set of N-regulated transcription factors (TFs) predicted to target the same genes and network modules in both species. Supernode analysis of the TFs and their targets in these conserved network modules uncovered genes directly related to N use (e.g. N assimilation) and to other shared biological processes indirectly related to N. This cross-species network approach was validated with members of two TF families in the supernode network, BASIC-LEUCINE ZIPPER TRANSCRIPTION FACTOR1-TGA and HYPERSENSITIVITY TO LOW PI-ELICITED PRIMARY ROOT SHORTENING1 (HRS1)/HRS1 Homolog family, which have recently been experimentally validated to mediate the N response in Arabidopsis.
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Affiliation(s)
- Mariana Obertello
- Center for Genomics and Systems Biology, Department of Biology, New York University, New York, New York 10003 (M.O., S.S., M.S.K., G.M.C.); andInstituto de Ingeniería Genética y Biología Molecular, Consejo Nacional de Investigaciones Científicas y Técnicas, C1428ADN Buenos Aires, Argentina (M.O.)
| | - Stuti Shrivastava
- Center for Genomics and Systems Biology, Department of Biology, New York University, New York, New York 10003 (M.O., S.S., M.S.K., G.M.C.); andInstituto de Ingeniería Genética y Biología Molecular, Consejo Nacional de Investigaciones Científicas y Técnicas, C1428ADN Buenos Aires, Argentina (M.O.)
| | - Manpreet S Katari
- Center for Genomics and Systems Biology, Department of Biology, New York University, New York, New York 10003 (M.O., S.S., M.S.K., G.M.C.); andInstituto de Ingeniería Genética y Biología Molecular, Consejo Nacional de Investigaciones Científicas y Técnicas, C1428ADN Buenos Aires, Argentina (M.O.)
| | - Gloria M Coruzzi
- Center for Genomics and Systems Biology, Department of Biology, New York University, New York, New York 10003 (M.O., S.S., M.S.K., G.M.C.); andInstituto de Ingeniería Genética y Biología Molecular, Consejo Nacional de Investigaciones Científicas y Técnicas, C1428ADN Buenos Aires, Argentina (M.O.)
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Tuttle JR, Nah G, Duke MV, Alexander DC, Guan X, Song Q, Chen ZJ, Scheffler BE, Haigler CH. Metabolomic and transcriptomic insights into how cotton fiber transitions to secondary wall synthesis, represses lignification, and prolongs elongation. BMC Genomics 2015; 16:477. [PMID: 26116072 PMCID: PMC4482290 DOI: 10.1186/s12864-015-1708-9] [Citation(s) in RCA: 55] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2014] [Accepted: 06/19/2015] [Indexed: 11/20/2022] Open
Abstract
Background The morphogenesis of single-celled cotton fiber includes extreme elongation and staged cell wall differentiation. Designing strategies for improving cotton fiber for textiles and other uses relies on uncovering the related regulatory mechanisms. In this research we compared the transcriptomes and metabolomes of two Gossypium genotypes, Gossypium barbadense cv Phytogen 800 and G. hirsutum cv Deltapine 90. When grown in parallel, the two types of fiber developed similarly except for prolonged fiber elongation in the G. barbadense cultivar. The data were collected from isolated fibers between 10 to 28 days post anthesis (DPA) representing: primary wall synthesis to support elongation; transitional cell wall remodeling; and secondary wall cellulose synthesis, which was accompanied by continuing elongation only in G. barbadense fiber. Results Of 206 identified fiber metabolites, 205 were held in common between the two genotypes. Approximately 38,000 transcripts were expressed in the fiber of each genotype, and these were mapped to the reference set and interpreted by homology to known genes. The developmental changes in the transcriptomes and the metabolomes were compared within and across genotypes with several novel implications. Transitional cell wall remodeling is a distinct stable developmental stage lasting at least four days (18 to 21 DPA). Expression of selected cell wall related transcripts was similar between genotypes, but cellulose synthase gene expression patterns were more complex than expected. Lignification was transcriptionally repressed in both genotypes. Oxidative stress was lower in the fiber of G. barbadense cv Phytogen 800 as compared to G. hirsutum cv Deltapine 90. Correspondingly, the G. barbadense cultivar had enhanced capacity for management of reactive oxygen species during its prolonged elongation period, as indicated by a 138-fold increase in ascorbate concentration at 28 DPA. Conclusions The parallel data on deep-sequencing transcriptomics and non-targeted metabolomics for two genotypes of single-celled cotton fiber showed that a discrete developmental stage of transitional cell wall remodeling occurs before secondary wall cellulose synthesis begins. The data showed how lignification can be transcriptionally repressed during secondary cell wall synthesis, and they implicated enhanced capacity to manage reactive oxygen species through the ascorbate-glutathione cycle as a positive contributor to fiber length. Electronic supplementary material The online version of this article (doi:10.1186/s12864-015-1708-9) contains supplementary material, which is available to authorized users.
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Affiliation(s)
- John R Tuttle
- Department of Crop Science, North Carolina State University, Raleigh, NC, 27695, USA.
| | - Gyoungju Nah
- Institute for Cellular and Molecular Biology and Center for Computational Biology and Bioinformatics, The University of Texas at Austin, Austin, TX, 78712, USA.
| | - Mary V Duke
- USDA ARS Genomics and Bioinformatics Research Unit, Stoneville, MS, 38776, USA.
| | | | - Xueying Guan
- Institute for Cellular and Molecular Biology and Center for Computational Biology and Bioinformatics, The University of Texas at Austin, Austin, TX, 78712, USA.
| | - Qingxin Song
- Institute for Cellular and Molecular Biology and Center for Computational Biology and Bioinformatics, The University of Texas at Austin, Austin, TX, 78712, USA.
| | - Z Jeffrey Chen
- Institute for Cellular and Molecular Biology and Center for Computational Biology and Bioinformatics, The University of Texas at Austin, Austin, TX, 78712, USA.
| | - Brian E Scheffler
- USDA ARS Genomics and Bioinformatics Research Unit, Stoneville, MS, 38776, USA.
| | - Candace H Haigler
- Department of Crop Science, North Carolina State University, Raleigh, NC, 27695, USA. .,Department of Plant and Microbial Biology, North Carolina State University, Raleigh, NC, 27695, USA.
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Pinto E, Ferreira IMPLVO. Cation transporters/channels in plants: Tools for nutrient biofortification. JOURNAL OF PLANT PHYSIOLOGY 2015; 179:64-82. [PMID: 25841207 DOI: 10.1016/j.jplph.2015.02.010] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/15/2014] [Revised: 02/11/2015] [Accepted: 02/11/2015] [Indexed: 05/07/2023]
Abstract
Cation transporters/channels are key players in a wide range of physiological functions in plants, including cell signaling, osmoregulation, plant nutrition and metal tolerance. The recent identification of genes encoding some of these transport systems has allowed new studies toward further understanding of their integrated roles in plant. This review summarizes recent discoveries regarding the function and regulation of the multiple systems involved in cation transport in plant cells. The role of membrane transport in the uptake, distribution and accumulation of cations in plant tissues, cell types and subcellular compartments is described. We also discuss how the knowledge of inter- and intra-species variation in cation uptake, transport and accumulation as well as the molecular mechanisms responsible for these processes can be used to increase nutrient phytoavailability and nutrients accumulation in the edible tissues of plants. The main trends for future research in the field of biofortification are proposed.
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Affiliation(s)
- Edgar Pinto
- REQUIMTE/Department of Chemical Sciences, Laboratory of Bromatology and Hydrology, Faculty of Pharmacy - University of Porto, Portugal; CISA - Research Centre on Environment and Health, School of Allied Health Sciences, Polytechnic Institute of Porto, Portugal.
| | - Isabel M P L V O Ferreira
- REQUIMTE/Department of Chemical Sciences, Laboratory of Bromatology and Hydrology, Faculty of Pharmacy - University of Porto, Portugal
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Masi E, Ciszak M, Comparini D, Monetti E, Pandolfi C, Azzarello E, Mugnai S, Baluška F, Mancuso S. The electrical network of maize root apex is gravity dependent. Sci Rep 2015; 5:7730. [PMID: 25588706 PMCID: PMC4295110 DOI: 10.1038/srep07730] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2014] [Accepted: 12/09/2014] [Indexed: 12/25/2022] Open
Abstract
Investigations carried out on maize roots under microgravity and hypergravity revealed that gravity conditions have strong effects on the network of plant electrical activity. Both the duration of action potentials (APs) and their propagation velocities were significantly affected by gravity. Similarly to what was reported for animals, increased gravity forces speed-up APs and enhance synchronized electrical events also in plants. The root apex transition zone emerges as the most active, as well as the most sensitive, root region in this respect.
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Affiliation(s)
- Elisa Masi
- LINV, Department of Agrifood Production and Environmental Sciences (DISPAA), University of Florence, viale delle Idee 30, 50019 Sesto Fiorentino (FI), Italy
| | - Marzena Ciszak
- 1] LINV, Department of Agrifood Production and Environmental Sciences (DISPAA), University of Florence, viale delle Idee 30, 50019 Sesto Fiorentino (FI), Italy [2] CNR, National Institute of Optics (INO), L.go E. Fermi 6, 50125 Florence, Italy
| | - Diego Comparini
- 1] LINV, Department of Agrifood Production and Environmental Sciences (DISPAA), University of Florence, viale delle Idee 30, 50019 Sesto Fiorentino (FI), Italy [2] LINV@Kitakyushu Research Center, University of Kitakyushu, 808-0135 Hibikino, Wakamatsu-ku, Kitakyushu, Fukuoka, Japan
| | - Emanuela Monetti
- LINV, Department of Agrifood Production and Environmental Sciences (DISPAA), University of Florence, viale delle Idee 30, 50019 Sesto Fiorentino (FI), Italy
| | - Camilla Pandolfi
- LINV, Department of Agrifood Production and Environmental Sciences (DISPAA), University of Florence, viale delle Idee 30, 50019 Sesto Fiorentino (FI), Italy
| | - Elisa Azzarello
- LINV, Department of Agrifood Production and Environmental Sciences (DISPAA), University of Florence, viale delle Idee 30, 50019 Sesto Fiorentino (FI), Italy
| | - Sergio Mugnai
- LINV, Department of Agrifood Production and Environmental Sciences (DISPAA), University of Florence, viale delle Idee 30, 50019 Sesto Fiorentino (FI), Italy
| | - Frantisek Baluška
- Department of Plant Cell Biology, Institute of Cellular and Molecular Botany (IZMB), University of Bonn, Kirschallee 1, D-53115 Bonn, Germany
| | - Stefano Mancuso
- LINV, Department of Agrifood Production and Environmental Sciences (DISPAA), University of Florence, viale delle Idee 30, 50019 Sesto Fiorentino (FI), Italy
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Davies LJ, Brown CR, Elling AA. Calcium is involved in the R Mc1 (blb)-mediated hypersensitive response against Meloidogyne chitwoodi in potato. PLANT CELL REPORTS 2015; 34:167-77. [PMID: 25315813 DOI: 10.1007/s00299-014-1697-1] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/12/2014] [Revised: 09/29/2014] [Accepted: 10/07/2014] [Indexed: 05/08/2023]
Abstract
Functional characterization of the Columbia root-knot nematode resistance gene R Mc1 ( blb ) in potato revealed the R gene-mediated resistance is dependent on a hypersensitive response and involves calcium. The resistance (R) gene R Mc1(blb) confers resistance against the plant-parasitic nematode, Meloidogyne chitwoodi. Avirulent and virulent nematodes were used to functionally characterize the R Mc1(blb)-mediated resistance mechanism in potato (Solanum tuberosum). Histological observations indicated a hypersensitive response (HR) occurred during avirulent nematode infection. This was confirmed by quantifying reactive oxygen species activity in response to avirulent and virulent M. chitwoodi. To gain an insight into the signal transduction pathways mediating the R Mc1(blb)-induced HR, chemical inhibitors were utilized. Inhibiting Ca(2+) channels caused a significant reduction in electrolyte leakage, an indicator of cell death. Labeling with a Ca(2+)-sensitive dye revealed high Ca(2+) levels in the root cells surrounding avirulent nematodes. Furthermore, the calcium-dependent protein kinase (CDPK), StCDPK4 had a higher transcript level in R Mc1(blb) potato roots infected with avirulent nematodes in comparison to roots infected with virulent M. chitwoodi. The results of this study indicate Ca(2+) plays a role in the R Mc1(blb)-mediated resistance against M. chitwoodi in potato.
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Affiliation(s)
- Laura J Davies
- Department of Plant Pathology, Washington State University, Pullman, WA, 99164, USA
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Nitrate foraging by Arabidopsis roots is mediated by the transcription factor TCP20 through the systemic signaling pathway. Proc Natl Acad Sci U S A 2014; 111:15267-72. [PMID: 25288754 DOI: 10.1073/pnas.1411375111] [Citation(s) in RCA: 145] [Impact Index Per Article: 14.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
To compete for nutrients in diverse soil microenvironments, plants proliferate lateral roots preferentially in nutrient-rich zones. For nitrate, root foraging involves local and systemic signaling; however, little is known about the genes that function in the systemic signaling pathway. By using nitrate enhancer DNA to screen a library of Arabidopsis transcription factors in the yeast one-hybrid system, the transcription factor gene TEOSINTE BRANCHED1/CYCLOIDEA/PROLIFERATING CELL FACTOR1-20 (TCP20) was identified. TCP20, which belongs to an ancient, plant-specific gene family that regulates shoot, flower, and embryo development, was implicated in nitrate signaling by its ability to bind DNA in more than 100 nitrate-regulated genes. Analysis of insertion mutants of TCP20 showed that they had normal primary and lateral root growth on homogenous nitrate media but were impaired in preferential lateral root growth (root foraging) on heterogeneous media in split-root plates. Inhibition of preferential lateral root growth was still evident in the mutants even when ammonium was uniformly present in the media, indicating that the TCP20 response was to nitrate. Comparison of tcp20 mutants with those of nlp7 mutants, which are defective in local control of root growth but not in the root-foraging response, indicated that TCP20 function is independent of and distinct from NLP7 function. Further analysis showed that tcp20 mutants lack systemic control of root growth regardless of the local nitrate concentrations. These results indicate that TCP20 plays a key role in the systemic signaling pathway that directs nitrate foraging by Arabidopsis roots.
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Pratelli R, Pilot G. Regulation of amino acid metabolic enzymes and transporters in plants. JOURNAL OF EXPERIMENTAL BOTANY 2014; 65:5535-56. [PMID: 25114014 DOI: 10.1093/jxb/eru320] [Citation(s) in RCA: 191] [Impact Index Per Article: 19.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/06/2023]
Abstract
Amino acids play several critical roles in plants, from providing the building blocks of proteins to being essential metabolites interacting with many branches of metabolism. They are also important molecules that shuttle organic nitrogen through the plant. Because of this central role in nitrogen metabolism, amino acid biosynthesis, degradation, and transport are tightly regulated to meet demand in response to nitrogen and carbon availability. While much is known about the feedback regulation of the branched biosynthesis pathways by the amino acids themselves, the regulation mechanisms at the transcriptional, post-transcriptional, and protein levels remain to be identified. This review focuses mainly on the current state of our understanding of the regulation of the enzymes and transporters at the transcript level. Current results describing the effect of transcription factors and protein modifications lead to a fragmental picture that hints at multiple, complex levels of regulation that control and coordinate transport and enzyme activities. It also appears that amino acid metabolism, amino acid transport, and stress signal integration can influence each other in a so-far unpredictable fashion.
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Affiliation(s)
- Réjane Pratelli
- Plant Pathology, Physiology and Weed Science, Virginia Tech, Blacksburg, VA 24060, USA
| | - Guillaume Pilot
- Plant Pathology, Physiology and Weed Science, Virginia Tech, Blacksburg, VA 24060, USA
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Forde BG. Nitrogen signalling pathways shaping root system architecture: an update. CURRENT OPINION IN PLANT BIOLOGY 2014; 21:30-36. [PMID: 24997289 DOI: 10.1016/j.pbi.2014.06.004] [Citation(s) in RCA: 116] [Impact Index Per Article: 11.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/08/2014] [Accepted: 06/12/2014] [Indexed: 05/03/2023]
Abstract
Root system architecture is a fundamentally important trait for resource acquisition in both ecological and agronomic contexts. Because of the plasticity of root development and the almost infinite complexity of the soil, root system architecture is shaped by environmental factors to a much greater degree than shoot architecture. In attempting to understand how roots sense and respond to environmental cues, the striking effects of nitrate and other forms of nitrogen on root growth and branching have received particular attention. This minireview focuses on the latest advances in our understanding of the diverse nitrogen signalling pathways that are now known to act at multiple stages in the process of lateral root development, as well as on primary root growth.
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Affiliation(s)
- Brian G Forde
- Lancaster Environment Centre, Lancaster University, Lancaster LA1 4YQ, UK.
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Yu C, Su S, Xu Y, Zhao Y, Yan A, Huang L, Ali I, Gan Y. The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice. PLoS One 2014; 9:e105597. [PMID: 25140876 PMCID: PMC4139386 DOI: 10.1371/journal.pone.0105597] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2014] [Accepted: 07/23/2014] [Indexed: 11/18/2022] Open
Abstract
The ANR1 MADS-box gene in Arabidopsis is a key gene involved in regulating lateral root development in response to the external nitrate supply. There are five ANR1-like genes in Oryza sativa, OsMADS23, OsMADS25, OsMADS27, OsMADS57 and OsMADS61, all of which belong to the AGL17 clade. Here we have investigated the responsiveness of these genes to fluctuations in nitrogen (N), phosphorus (P) and sulfur (S) mineral nutrient supply. The MADS-box genes have been shown to have a range of responses to the nutrient supply. The expression of OsMADS61 was transiently induced by N deprivation but was not affected by re-supply with various N sources. The expression of OsMADS25 and OsMADS27 was induced by re-supplying with NO3(-) and NH4NO3, but downregulated by NH4(+). The expression of OsMADS57 was significantly downregulated by N starvation and upregulated by 3 h NO3(-) re-supply. OsMADS23 was the only gene that showed no response to either N starvation nor NO3(-) re-supply. OsMADS57 was the only gene not regulated by P fluctuation whereas the expression of OsMADS23, OsMADS25 and OsMADS27 was downregulated by P starvation and P re-supply. In contrast, all five ANR1-related genes were significantly upregulated by S starvation. Our results also indicated that there were interactions among nitrate, sulphate and phosphate transporters in rice.
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Affiliation(s)
- Chunyan Yu
- Zhejiang Key Lab of Crop Germplasm, Department of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, China
| | - Sha Su
- Zhejiang Key Lab of Crop Germplasm, Department of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, China
| | - Yichun Xu
- Zhejiang Key Lab of Crop Germplasm, Department of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, China
| | - Yongqin Zhao
- Zhejiang Key Lab of Crop Germplasm, Department of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, China
| | - An Yan
- Zhejiang Key Lab of Crop Germplasm, Department of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, China
| | - Linli Huang
- Zhejiang Key Lab of Crop Germplasm, Department of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, China
| | - Imran Ali
- Zhejiang Key Lab of Crop Germplasm, Department of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, China
| | - Yinbo Gan
- Zhejiang Key Lab of Crop Germplasm, Department of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, China
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Forde BG, Roberts MR. Glutamate receptor-like channels in plants: a role as amino acid sensors in plant defence? F1000PRIME REPORTS 2014; 6:37. [PMID: 24991414 PMCID: PMC4075314 DOI: 10.12703/p6-37] [Citation(s) in RCA: 90] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Abstract
Plant glutamate receptor-like genes (GLRs) are homologous to the genes for mammalian ionotropic glutamate receptors (iGluRs), after which they were named, but in the 16 years since their existence was first revealed, progress in elucidating their biological role has been disappointingly slow. Recently, however, studies from a number of laboratories focusing on the model plant species Arabidopsis thaliana (L.) have thrown new light on the functional properties of some members of the GLR gene family. One important finding has been that plant GLR receptors have a much broader ligand specificity than their mammalian iGluR counterparts, with evidence that some individual GLR receptors can be gated by as many as seven amino acids. These results, together with the ubiquity of their expression throughout the plant, open up the possibility that GLR receptors could have a pervasive role in plants as non-specific amino acid sensors in diverse biological processes. Addressing what one of these roles could be, recent studies examining the wound response and disease susceptibility in GLR knockout mutants have provided evidence that some members of clade 3 of the GLR gene family encode important components of the plant's defence response. Ways in which this family of amino acid receptors might contribute to the plant's ability to respond to an attack from pests and pathogens are discussed.
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New insights on plant cell elongation: a role for acetylcholine. Int J Mol Sci 2014; 15:4565-82. [PMID: 24642879 PMCID: PMC3975414 DOI: 10.3390/ijms15034565] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2014] [Revised: 03/07/2014] [Accepted: 03/11/2014] [Indexed: 12/04/2022] Open
Abstract
We investigated the effect of auxin and acetylcholine on the expression of the tomato expansin gene LeEXPA2, a specific expansin gene expressed in elongating tomato hypocotyl segments. Since auxin interferes with clathrin-mediated endocytosis, in order to regulate cellular and developmental responses we produced protoplasts from tomato elongating hypocotyls and followed the endocytotic marker, FM4-64, internalization in response to treatments. Tomato protoplasts were observed during auxin and acetylcholine treatments after transient expression of chimerical markers of volume-control related compartments such as vacuoles. Here we describe the contribution of auxin and acetylcholine to LeEXPA2 expression regulation and we support the hypothesis that a possible subcellular target of acetylcholine signal is the vesicular transport, shedding some light on the characterization of this small molecule as local mediator in the plant physiological response.
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