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For: Williams JC, Zeelen JP, Neubauer G, Vriend G, Backmann J, Michels PA, Lambeir AM, Wierenga RK. Structural and mutagenesis studies of leishmania triosephosphate isomerase: a point mutation can convert a mesophilic enzyme into a superstable enzyme without losing catalytic power. Protein Eng 1999;12:243-50. [PMID: 10235625 DOI: 10.1093/protein/12.3.243] [Citation(s) in RCA: 87] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
Number Cited by Other Article(s)
51
Tellez LA, Blancas-Mejia LM, Carrillo-Nava E, Mendoza-Hernández G, Cisneros DA, Fernández-Velasco DA. Thermal Unfolding of Triosephosphate Isomerase from Entamoeba histolytica: Dimer Dissociation Leads to Extensive Unfolding. Biochemistry 2008;47:11665-73. [DOI: 10.1021/bi801360k] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
52
The Folding Pathway of Triosephosphate Isomerase. PROGRESS IN MOLECULAR BIOLOGY AND TRANSLATIONAL SCIENCE 2008. [DOI: 10.1016/s0079-6603(08)00407-8] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register]
53
Olivares-Illana V, Rodríguez-Romero A, Becker I, Berzunza M, García J, Pérez-Montfort R, Cabrera N, López-Calahorra F, de Gómez-Puyou MT, Gómez-Puyou A. Perturbation of the dimer interface of triosephosphate isomerase and its effect on Trypanosoma cruzi. PLoS Negl Trop Dis 2007;1:e1. [PMID: 17989778 PMCID: PMC2041813 DOI: 10.1371/journal.pntd.0000001] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2007] [Accepted: 06/07/2007] [Indexed: 11/18/2022]  Open
54
Gabdoulline RR, Stein M, Wade RC. qPIPSA: relating enzymatic kinetic parameters and interaction fields. BMC Bioinformatics 2007;8:373. [PMID: 17919319 PMCID: PMC2174957 DOI: 10.1186/1471-2105-8-373] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2007] [Accepted: 10/05/2007] [Indexed: 11/29/2022]  Open
55
Leisola M, Turunen O. Protein engineering: opportunities and challenges. Appl Microbiol Biotechnol 2007;75:1225-32. [PMID: 17404726 DOI: 10.1007/s00253-007-0964-2] [Citation(s) in RCA: 51] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2007] [Revised: 03/20/2007] [Accepted: 03/21/2007] [Indexed: 11/26/2022]
56
Reyes-Vivas H, Diaz A, Peon J, Mendoza-Hernandez G, Hernandez-Alcantara G, De la Mora-De la Mora I, Enriquez-Flores S, Dominguez-Ramirez L, Lopez-Velazquez G. Disulfide bridges in the mesophilic triosephosphate isomerase from Giardia lamblia are related to oligomerization and activity. J Mol Biol 2006;365:752-63. [PMID: 17095008 DOI: 10.1016/j.jmb.2006.10.053] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2006] [Revised: 10/12/2006] [Accepted: 10/17/2006] [Indexed: 11/25/2022]
57
Sterner R, Höcker B. Catalytic Versatility, Stability, and Evolution of the (βα)8-Barrel Enzyme Fold. Chem Rev 2005;105:4038-55. [PMID: 16277370 DOI: 10.1021/cr030191z] [Citation(s) in RCA: 160] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
58
Eijsink VGH, Gåseidnes S, Borchert TV, van den Burg B. Directed evolution of enzyme stability. ACTA ACUST UNITED AC 2005;22:21-30. [PMID: 15857780 DOI: 10.1016/j.bioeng.2004.12.003] [Citation(s) in RCA: 303] [Impact Index Per Article: 15.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2004] [Revised: 11/29/2004] [Accepted: 12/02/2004] [Indexed: 11/16/2022]
59
Saugar I, Luque D, Oña A, Rodríguez JF, Carrascosa JL, Trus BL, Castón JR. Structural Polymorphism of the Major Capsid Protein of a Double-Stranded RNA Virus: An Amphipathic α Helix as a Molecular Switch. Structure 2005;13:1007-17. [PMID: 16004873 DOI: 10.1016/j.str.2005.04.012] [Citation(s) in RCA: 59] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2004] [Revised: 04/05/2005] [Accepted: 04/05/2005] [Indexed: 11/26/2022]
60
Höcker B. Directed evolution of (βα)8-barrel enzymes. ACTA ACUST UNITED AC 2005;22:31-8. [PMID: 15857781 DOI: 10.1016/j.bioeng.2004.09.005] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2004] [Revised: 09/23/2004] [Accepted: 09/24/2004] [Indexed: 10/25/2022]
61
Eijsink VGH, Bjørk A, Gåseidnes S, Sirevåg R, Synstad B, van den Burg B, Vriend G. Rational engineering of enzyme stability. J Biotechnol 2004;113:105-20. [PMID: 15380651 DOI: 10.1016/j.jbiotec.2004.03.026] [Citation(s) in RCA: 326] [Impact Index Per Article: 16.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2003] [Revised: 02/16/2004] [Accepted: 03/04/2004] [Indexed: 11/19/2022]
62
Bjørk A, Dalhus B, Mantzilas D, Sirevåg R, Eijsink VGH. Large improvement in the thermal stability of a tetrameric malate dehydrogenase by single point mutations at the dimer-dimer interface. J Mol Biol 2004;341:1215-26. [PMID: 15321717 DOI: 10.1016/j.jmb.2004.06.079] [Citation(s) in RCA: 33] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2004] [Revised: 06/06/2004] [Accepted: 06/22/2004] [Indexed: 10/26/2022]
63
Xiang T, Liu Q, Deacon AM, Koshy M, Kriksunov IA, Lei XG, Hao Q, Thiel DJ. Crystal structure of a heat-resilient phytase from Aspergillus fumigatus, carrying a phosphorylated histidine. J Mol Biol 2004;339:437-45. [PMID: 15136045 DOI: 10.1016/j.jmb.2004.03.057] [Citation(s) in RCA: 47] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/02/2004] [Revised: 03/09/2004] [Accepted: 03/09/2004] [Indexed: 11/16/2022]
64
Bjørk A, Dalhus B, Mantzilas D, Eijsink VGH, Sirevåg R. Stabilization of a Tetrameric Malate Dehydrogenase by Introduction of a Disulfide Bridge at the Dimer–Dimer Interface. J Mol Biol 2003;334:811-21. [PMID: 14636605 DOI: 10.1016/j.jmb.2003.10.006] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
65
Aparicio R, Ferreira ST, Polikarpov I. Closed Conformation of the Active Site Loop of Rabbit Muscle Triosephosphate Isomerase in the Absence of Substrate: Evidence of Conformational Heterogeneity. J Mol Biol 2003;334:1023-41. [PMID: 14643664 DOI: 10.1016/j.jmb.2003.10.022] [Citation(s) in RCA: 38] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
66
Gåseidnes S, Synstad B, Nielsen JE, Eijsink VG. Rational engineering of the stability and the catalytic performance of enzymes. ACTA ACUST UNITED AC 2003. [DOI: 10.1016/s1381-1177(02)00136-4] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
67
Rodríguez-Romero A, Hernández-Santoyo A, del Pozo Yauner L, Kornhauser A, Fernández-Velasco DA. Structure and inactivation of triosephosphate isomerase from Entamoeba histolytica. J Mol Biol 2002;322:669-75. [PMID: 12270704 DOI: 10.1016/s0022-2836(02)00809-4] [Citation(s) in RCA: 46] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
68
van den Burg B, Eijsink VGH. Selection of mutations for increased protein stability. Curr Opin Biotechnol 2002;13:333-7. [PMID: 12323355 DOI: 10.1016/s0958-1669(02)00325-7] [Citation(s) in RCA: 98] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
69
Brinda KV, Kannan N, Vishveshwara S. Analysis of homodimeric protein interfaces by graph-spectral methods. Protein Eng Des Sel 2002;15:265-77. [PMID: 11983927 DOI: 10.1093/protein/15.4.265] [Citation(s) in RCA: 49] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]  Open
70
Chánez-Cárdenas ME, Fernández-Velasco DA, Vázquez-Contreras E, Coria R, Saab-Rincón G, Pérez-Montfort R. Unfolding of triosephosphate isomerase from Trypanosoma brucei: identification of intermediates and insight into the denaturation pathway using tryptophan mutants. Arch Biochem Biophys 2002;399:117-29. [PMID: 11888197 DOI: 10.1006/abbi.2001.2749] [Citation(s) in RCA: 33] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
71
Gershenson A, Arnold FH. Enzyme stabilization by directed evolution. GENETIC ENGINEERING 2001;22:55-76. [PMID: 11501381 DOI: 10.1007/978-1-4615-4199-8_5] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/21/2023]
72
Angrand I, Serrano L, Lacroix E. Computer-assisted re-design of spectrin SH3 residue clusters. BIOMOLECULAR ENGINEERING 2001;18:125-34. [PMID: 11566604 DOI: 10.1016/s1389-0344(01)00093-4] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
73
Kursula I, Partanen S, Lambeir AM, Antonov DM, Augustyns K, Wierenga RK. Structural determinants for ligand binding and catalysis of triosephosphate isomerase. EUROPEAN JOURNAL OF BIOCHEMISTRY 2001;268:5189-96. [PMID: 11589711 DOI: 10.1046/j.0014-2956.2001.02452.x] [Citation(s) in RCA: 36] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
74
Yasugi M, Suzuki T, Yamagishi A, Oshima T. Analysis of the effect of accumulation of amino acid replacements on activity of 3-isopropylmalate dehydrogenase from Thermus thermophilus. PROTEIN ENGINEERING 2001;14:601-7. [PMID: 11579229 DOI: 10.1093/protein/14.8.601] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]
75
Höcker B, Jürgens C, Wilmanns M, Sterner R. Stability, catalytic versatility and evolution of the (beta alpha)(8)-barrel fold. Curr Opin Biotechnol 2001;12:376-81. [PMID: 11551466 DOI: 10.1016/s0958-1669(00)00230-5] [Citation(s) in RCA: 76] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
76
Schramm A, Kohlhoff M, Hensel R. Triose-phosphate isomerase from Pyrococcus woesei and Methanothermus fervidus. Methods Enzymol 2001;331:62-77. [PMID: 11265484 DOI: 10.1016/s0076-6879(01)31047-9] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/19/2023]
77
Wintrode PL, Arnold FH. Temperature adaptation of enzymes: lessons from laboratory evolution. ADVANCES IN PROTEIN CHEMISTRY 2001;55:161-225. [PMID: 11050934 DOI: 10.1016/s0065-3233(01)55004-4] [Citation(s) in RCA: 121] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
78
Irún MP, Garcia-Mira MM, Sanchez-Ruiz JM, Sancho J. Native hydrogen bonds in a molten globule: the apoflavodoxin thermal intermediate. J Mol Biol 2001;306:877-88. [PMID: 11243795 DOI: 10.1006/jmbi.2001.4436] [Citation(s) in RCA: 42] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
79
Irún MP, Maldonado S, Sancho J. Stabilization of apoflavodoxin by replacing hydrogen-bonded charged Asp or Glu residues by the neutral isosteric Asn or Gln. PROTEIN ENGINEERING 2001;14:173-81. [PMID: 11342714 DOI: 10.1093/protein/14.3.173] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
80
Arnold FH, Wintrode PL, Miyazaki K, Gershenson A. How enzymes adapt: lessons from directed evolution. Trends Biochem Sci 2001;26:100-6. [PMID: 11166567 DOI: 10.1016/s0968-0004(00)01755-2] [Citation(s) in RCA: 243] [Impact Index Per Article: 10.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
81
Verlinde CL, Hannaert V, Blonski C, Willson M, Périé JJ, Fothergill-Gilmore LA, Opperdoes FR, Gelb MH, Hol WG, Michels PA. Glycolysis as a target for the design of new anti-trypanosome drugs. Drug Resist Updat 2001;4:50-65. [PMID: 11512153 DOI: 10.1054/drup.2000.0177] [Citation(s) in RCA: 170] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
82
Kajander T, Kahn PC, Passila SH, Cohen DC, Lehtiö L, Adolfsen W, Warwicker J, Schell U, Goldman A. Buried charged surface in proteins. Structure 2000;8:1203-14. [PMID: 11080642 DOI: 10.1016/s0969-2126(00)00520-7] [Citation(s) in RCA: 96] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
83
Lambeir AM, Backmann J, Ruiz-Sanz J, Filimonov V, Nielsen JE, Kursula I, Norledge BV, Wierenga RK. The ionization of a buried glutamic acid is thermodynamically linked to the stability of Leishmania mexicana triose phosphate isomerase. EUROPEAN JOURNAL OF BIOCHEMISTRY 2000;267:2516-24. [PMID: 10785370 DOI: 10.1046/j.1432-1327.2000.01254.x] [Citation(s) in RCA: 46] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
84
Lehmann M, Kostrewa D, Wyss M, Brugger R, D'Arcy A, Pasamontes L, van Loon AP. From DNA sequence to improved functionality: using protein sequence comparisons to rapidly design a thermostable consensus phytase. PROTEIN ENGINEERING 2000;13:49-57. [PMID: 10679530 DOI: 10.1093/protein/13.1.49] [Citation(s) in RCA: 157] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
85
Valdar WSJ, Thornton JM. Protein-protein interfaces: Analysis of amino acid conservation in homodimers. Proteins 2000. [DOI: 10.1002/1097-0134(20010101)42:1<108::aid-prot110>3.0.co;2-o] [Citation(s) in RCA: 245] [Impact Index Per Article: 10.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
86
Maes D, Zeelen JP, Thanki N, Beaucamp N, Alvarez M, Thi MHD, Backmann J, Martial JA, Wyns L, Jaenicke R, Wierenga RK. The crystal structure of triosephosphate isomerase (TIM) fromThermotoga maritima: A comparative thermostability structural analysis of ten different TIM structures. Proteins 1999. [DOI: 10.1002/(sici)1097-0134(19991115)37:3<441::aid-prot11>3.0.co;2-7] [Citation(s) in RCA: 108] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
87
Alvarez M, Wouters J, Maes D, Mainfroid V, Rentier-Delrue F, Wyns L, Depiereux E, Martial JA. Lys13 plays a crucial role in the functional adaptation of the thermophilic triose-phosphate isomerase from Bacillus stearothermophilus to high temperatures. J Biol Chem 1999;274:19181-7. [PMID: 10383424 DOI: 10.1074/jbc.274.27.19181] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
88
Paper Alert. Structure 1999. [DOI: 10.1016/s0969-2126(99)80093-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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