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Godjo A, Afouda L, Baimey H, Decraemer W, Willems A. Molecular diversity of Photorhabdus and Xenorhabdus bacteria, symbionts of Heterorhabditis and Steinernema nematodes retrieved from soil in Benin. Arch Microbiol 2017; 200:589-601. [DOI: 10.1007/s00203-017-1470-2] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2017] [Revised: 11/28/2017] [Accepted: 12/11/2017] [Indexed: 02/02/2023]
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52
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Kim IH, Aryal SK, Aghai DT, Casanova-Torres ÁM, Hillman K, Kozuch MP, Mans EJ, Mauer TJ, Ogier JC, Ensign JC, Gaudriault S, Goodman WG, Goodrich-Blair H, Dillman AR. The insect pathogenic bacterium Xenorhabdus innexi has attenuated virulence in multiple insect model hosts yet encodes a potent mosquitocidal toxin. BMC Genomics 2017; 18:927. [PMID: 29191166 PMCID: PMC5709968 DOI: 10.1186/s12864-017-4311-4] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2017] [Accepted: 11/16/2017] [Indexed: 11/25/2022] Open
Abstract
BACKGROUND Xenorhabdus innexi is a bacterial symbiont of Steinernema scapterisci nematodes, which is a cricket-specialist parasite and together the nematode and bacteria infect and kill crickets. Curiously, X. innexi expresses a potent extracellular mosquitocidal toxin activity in culture supernatants. We sequenced a draft genome of X. innexi and compared it to the genomes of related pathogens to elucidate the nature of specialization. RESULTS Using green fluorescent protein-expressing X. innexi we confirm previous reports using culture-dependent techniques that X. innexi colonizes its nematode host at low levels (~3-8 cells per nematode), relative to other Xenorhabdus-Steinernema associations. We found that compared to the well-characterized entomopathogenic nematode symbiont X. nematophila, X. innexi fails to suppress the insect phenoloxidase immune pathway and is attenuated for virulence and reproduction in the Lepidoptera Galleria mellonella and Manduca sexta, as well as the dipteran Drosophila melanogaster. To assess if, compared to other Xenorhabdus spp., X. innexi has a reduced capacity to synthesize virulence determinants, we obtained and analyzed a draft genome sequence. We found no evidence for several hallmarks of Xenorhabdus spp. toxicity, including Tc and Mcf toxins. Similar to other Xenorhabdus genomes, we found numerous loci predicted to encode non-ribosomal peptide/polyketide synthetases. Anti-SMASH predictions of these loci revealed one, related to the fcl locus that encodes fabclavines and zmn locus that encodes zeamines, as a likely candidate to encode the X. innexi mosquitocidal toxin biosynthetic machinery, which we designated Xlt. In support of this hypothesis, two mutants each with an insertion in an Xlt biosynthesis gene cluster lacked the mosquitocidal compound based on HPLC/MS analysis and neither produced toxin to the levels of the wild type parent. CONCLUSIONS The X. innexi genome will be a valuable resource in identifying loci encoding new metabolites of interest, but also in future comparative studies of nematode-bacterial symbiosis and niche partitioning among bacterial pathogens.
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Affiliation(s)
- Il-Hwan Kim
- Department of Entomology, University of Wisconsin-Madison, Madison, WI USA
- Present address: Laboratory of Malaria and Vector Research, National Institute of Allergy and Infectious Diseases, Rockville, MD USA
| | | | - Dariush T. Aghai
- Department of Bacteriology, University of Wisconsin-Madison, Madison, WI USA
| | | | - Kai Hillman
- Department of Bacteriology, University of Wisconsin-Madison, Madison, WI USA
| | - Michael P. Kozuch
- Department of Bacteriology, University of Wisconsin-Madison, Madison, WI USA
| | - Erin J. Mans
- Department of Bacteriology, University of Wisconsin-Madison, Madison, WI USA
- Department of Microbiology, University of Tennessee-Knoxville, Knoxville, TN USA
| | - Terra J. Mauer
- Department of Bacteriology, University of Wisconsin-Madison, Madison, WI USA
- Department of Microbiology, University of Tennessee-Knoxville, Knoxville, TN USA
| | | | - Jerald C. Ensign
- Department of Bacteriology, University of Wisconsin-Madison, Madison, WI USA
| | | | - Walter G. Goodman
- Department of Entomology, University of Wisconsin-Madison, Madison, WI USA
| | - Heidi Goodrich-Blair
- Department of Bacteriology, University of Wisconsin-Madison, Madison, WI USA
- Department of Microbiology, University of Tennessee-Knoxville, Knoxville, TN USA
| | - Adler R. Dillman
- Department of Nematology, University of California, Riverside, CA USA
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Fukruksa C, Yimthin T, Suwannaroj M, Muangpat P, Tandhavanant S, Thanwisai A, Vitta A. Isolation and identification of Xenorhabdus and Photorhabdus bacteria associated with entomopathogenic nematodes and their larvicidal activity against Aedes aegypti. Parasit Vectors 2017; 10:440. [PMID: 28934970 PMCID: PMC5609025 DOI: 10.1186/s13071-017-2383-2] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2017] [Accepted: 09/17/2017] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND Aedes aegypti is a potential vector of West Nile, Japanese encephalitis, chikungunya, dengue and Zika viruses. Alternative control measurements of the vector are needed to overcome the problems of environmental contamination and chemical resistance. Xenorhabdus and Photorhabdus are symbionts in the intestine of entomopathogenic nematodes (EPNs) Steinernema spp. and Heterorhabditis spp. These bacteria are able to produce a broad range of bioactive compounds including antimicrobial, antiparasitic, cytotoxic and insecticidal compounds. The objectives of this study were to identify Xenorhabdus and Photorhabdus isolated from EPNs in upper northern Thailand and to study their larvicidal activity against Ae. aegypti larvae. RESULTS A total of 60 isolates of symbiotic bacteria isolated from EPNs consisted of Xenorhabdus (32 isolates) and Photorhabdus (28 isolates). Based on recA gene sequencing, BLASTN and phylogenetic analysis, 27 isolates of Xenorhabdus were identical and closely related to X. stockiae, 4 isolates were identical to X. miraniensis, and one isolate was identical to X. ehlersii. Twenty-seven isolates of Photorhabdus were closely related to P. luminescens akhurstii and P. luminescens hainanensis, and only one isolate was identical and closely related to P. luminescens laumondii. Xenorhabdus and Photorhabdus were lethal to Ae aegypti larvae. Xenorhabdus ehlersii bMH9.2_TH showed 100% efficiency for killing larvae of both fed and unfed conditions, the highest for control of Ae. aegypti larvae and X. stockiae (bLPA18.4_TH) was likely to be effective in killing Ae. aegypti larvae given the mortality rates above 60% at 72 h and 96 h. CONCLUSIONS The common species in the study area are X. stockiae, P. luminescens akhurstii, and P. luminescens hainanensis. Three symbiotic associations identified included P. luminescens akhurstii-H. gerrardi, P. luminescens hainanensis-H. gerrardi and X. ehlersii-S. Scarabaei which are new observations of importance to our knowledge of the biodiversity of, and relationships between, EPNs and their symbiotic bacteria. Based on the biological assay, X. ehlersii bMH9.2_TH begins to kill Ae. aegypti larvae within 48 h and has the most potential as a pathogen to the larvae. These data indicate that X. ehlersii may be an alternative biological control agent for Ae. aegypti and other mosquitoes.
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Affiliation(s)
- Chamaiporn Fukruksa
- Department of Microbiology and Parasitology, Faculty of Medical Science, Naresuan University, Phitsanulok, 65000, Thailand
| | - Thatcha Yimthin
- Department of Microbiology and Parasitology, Faculty of Medical Science, Naresuan University, Phitsanulok, 65000, Thailand.,Department of Microbiology and Immunology, Faculty of Tropical Medicine, Mahidol University, Bangkok, 10400, Thailand
| | - Manawat Suwannaroj
- Department of Microbiology and Parasitology, Faculty of Medical Science, Naresuan University, Phitsanulok, 65000, Thailand
| | - Paramaporn Muangpat
- Department of Microbiology and Parasitology, Faculty of Medical Science, Naresuan University, Phitsanulok, 65000, Thailand
| | - Sarunporn Tandhavanant
- Department of Microbiology and Immunology, Faculty of Tropical Medicine, Mahidol University, Bangkok, 10400, Thailand
| | - Aunchalee Thanwisai
- Department of Microbiology and Parasitology, Faculty of Medical Science, Naresuan University, Phitsanulok, 65000, Thailand.,Centre of Excellence in Medical Biotechnology (CEMB), Faculty of Medical Science, Naresuan University, Phitsanulok, 65000, Thailand.,Center of Excellence for Biodiversity, Faculty of Sciences, Naresuan University, Phitsanulok, 65000, Thailand
| | - Apichat Vitta
- Department of Microbiology and Parasitology, Faculty of Medical Science, Naresuan University, Phitsanulok, 65000, Thailand. .,Centre of Excellence in Medical Biotechnology (CEMB), Faculty of Medical Science, Naresuan University, Phitsanulok, 65000, Thailand. .,Center of Excellence for Biodiversity, Faculty of Sciences, Naresuan University, Phitsanulok, 65000, Thailand.
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Lalramnghaki HC, Vanlalhlimpuia, Vanramliana, Lalramliana. Characterization of a new isolate of entomopathogenic nematode, Steinernema sangi (Rhabditida, Steinernematidae), and its symbiotic bacteria Xenorhabdus vietnamensis (γ-Proteobacteria) from Mizoram, northeastern India. J Parasit Dis 2017; 41:1123-1131. [PMID: 29114152 DOI: 10.1007/s12639-017-0945-z] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2017] [Accepted: 07/13/2017] [Indexed: 10/19/2022] Open
Abstract
A survey was conducted to isolate indigenous EPN, specifically from the northeastern part of India, a biodiversity hotspot region, to record the occurrence and their further use as biological control agent. The morphological and molecular analysis (ITS rDNA for Steinernema and 16S rRNA for Xenorhabdus) revealed that the entomopathogenic nematodes isolated from four different habitats and its symbiotic bacteria are conspecific with Steinernema sangi and Xenorhabdus vietnamensis respectively. The phylogenetic analysis based on maximum parsimony (MP) revealed that Steinernema sangi belongs to feltiae-kraussei-oregonense group. The study constitutes the first report of Steinernema sangi and its symbiotic bacteria Xenorhabdus vietnamensis outside the type locality, Vietnam, and in particular from India.
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Affiliation(s)
- H C Lalramnghaki
- Department of Zoology, Pachhunga University College, Aizawl, Mizoram 796001 India
| | - Vanlalhlimpuia
- Department of Zoology, Pachhunga University College, Aizawl, Mizoram 796001 India
| | - Vanramliana
- Department of Zoology, Pachhunga University College, Aizawl, Mizoram 796001 India
| | - Lalramliana
- Department of Zoology, Pachhunga University College, Aizawl, Mizoram 796001 India
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Muangpat P, Yooyangket T, Fukruksa C, Suwannaroj M, Yimthin T, Sitthisak S, Chantratita N, Vitta A, Tobias NJ, Bode HB, Thanwisai A. Screening of the Antimicrobial Activity against Drug Resistant Bacteria of Photorhabdus and Xenorhabdus Associated with Entomopathogenic Nematodes from Mae Wong National Park, Thailand. Front Microbiol 2017; 8:1142. [PMID: 28702004 PMCID: PMC5487437 DOI: 10.3389/fmicb.2017.01142] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2017] [Accepted: 06/06/2017] [Indexed: 11/30/2022] Open
Abstract
Photorhabdus and Xenorhabdus are symbiotic with entomopathogenic nematodes (EPNs) of the genera Heterorhabditis and Steinernema, respectively. These bacteria produce several secondary metabolites including antimicrobial compounds. The objectives of this study were to isolate and identify EPNs and their symbiotic bacteria from Mae Wong National Park, Thailand and to evaluate the antibacterial activities of symbiont extracts against drug resistant bacteria. A total of 550 soil samples from 110 sites were collected between August 2014 and July 2015. A total of EPN isolates were obtained through baiting and White trap methods, which yielded 21 Heterorhabditis and 3 Steinernema isolates. Based on molecular identification and phylogenetic analysis, the most common species found in the present study was P. luminescens subsp. akhurstii associated with H. indica. Notably, two species of EPNs, H. zealandica and S. kushidai, and two species of symbiotic bacteria, X. japonica and P. temperata subsp. temperata represented new recorded organisms in Thailand. Furthermore, the association between P. temperata subsp. temperata and H. zealandica has not previously been reported worldwide. Disk diffusion, minimal inhibitory concentration, and minimal bactericidal concentration analyses demonstrated that the crude compound extracted by ethyl acetate from P. temperata subsp. temperata could inhibit the growth of up to 10 strains of drug resistant bacteria. Based on HPLC-MS analysis, compound classes in bacterial extracts were identified as GameXPeptide, xenoamicin, xenocoumacin, mevalagmapeptide phurealipids derivatives, and isopropylstilbene. Together, the results of this study provide evidence for the diversity of EPNs and their symbiotic bacteria in Mae Wong National Park, Thailand and demonstrate their novel associations. These findings also provide an important foundation for further research regarding the antimicrobial activity of Photorhabdus bacteria.
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Affiliation(s)
- Paramaporn Muangpat
- Department of Microbiology and Parasitology, Faculty of Medical Science, Naresuan UniversityPhitsanulok, Thailand
| | - Temsiri Yooyangket
- Department of Microbiology and Parasitology, Faculty of Medical Science, Naresuan UniversityPhitsanulok, Thailand
| | - Chamaiporn Fukruksa
- Department of Microbiology and Parasitology, Faculty of Medical Science, Naresuan UniversityPhitsanulok, Thailand
| | - Manawat Suwannaroj
- Department of Microbiology and Parasitology, Faculty of Medical Science, Naresuan UniversityPhitsanulok, Thailand
| | - Thatcha Yimthin
- Department of Microbiology and Parasitology, Faculty of Medical Science, Naresuan UniversityPhitsanulok, Thailand.,Department of Microbiology and Immunology, Faculty of Tropical Medicine, Mahidol UniversityBangkok, Thailand
| | - Sutthirat Sitthisak
- Department of Microbiology and Parasitology, Faculty of Medical Science, Naresuan UniversityPhitsanulok, Thailand.,Centre of Excellence in Medical Biotechnology, Faculty of Medical Science, Naresuan UniversityPhitsanulok, Thailand
| | - Narisara Chantratita
- Department of Microbiology and Immunology, Faculty of Tropical Medicine, Mahidol UniversityBangkok, Thailand
| | - Apichat Vitta
- Department of Microbiology and Parasitology, Faculty of Medical Science, Naresuan UniversityPhitsanulok, Thailand.,Centre of Excellence in Medical Biotechnology, Faculty of Medical Science, Naresuan UniversityPhitsanulok, Thailand.,Center of Excellence for Biodiversity, Faculty of Sciences, Naresuan UniversityPhitsanulok, Thailand
| | - Nicholas J Tobias
- Merck-Stiftungsprofessur für Molekulare Biotechnologie, Fachbereich Biowissenschaften, Goethe Universität FrankfurtFrankfurt am Main, Germany
| | - Helge B Bode
- Merck-Stiftungsprofessur für Molekulare Biotechnologie, Fachbereich Biowissenschaften, Goethe Universität FrankfurtFrankfurt am Main, Germany.,Buchmann Institute for Molecular Life Sciences, Goethe University FrankfurtFrankfurt am Main, Germany
| | - Aunchalee Thanwisai
- Department of Microbiology and Parasitology, Faculty of Medical Science, Naresuan UniversityPhitsanulok, Thailand.,Centre of Excellence in Medical Biotechnology, Faculty of Medical Science, Naresuan UniversityPhitsanulok, Thailand.,Center of Excellence for Biodiversity, Faculty of Sciences, Naresuan UniversityPhitsanulok, Thailand
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56
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Kämpfer P, Tobias NJ, Ke LP, Bode HB, Glaeser SP. Xenorhabdus thuongxuanensis sp. nov. and Xenorhabdus eapokensis sp. nov., isolated from Steinernema species. Int J Syst Evol Microbiol 2017; 67:1107-1114. [PMID: 28056225 DOI: 10.1099/ijsem.0.001770] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Two slightly yellowish-pigmented, oxidase-negative, rod-shaped and Gram-stain-negative bacterial strains (30TX1T and DL20T), isolated from Steinernema sangi and Steinernema eapokense, respectively, during soil sampling in Vietnam were studied using a polyphasic taxonomic approach. Strain 30TX1T showed highest 16S rRNA gene sequence similarity to the type strain of Xenorhabdus ehlersii (98.9 %) and strain DL20T to that of Xenorhabdus ishibashii (98.7 %). Sequence similarities to all other Xenorhabdus species were lower (<98.4 %). The two strains shared 98 % 16S rRNA gene sequence similarity. Multilocus sequence analysis (MLSA) based on concatenated partial recA, dnaN, gltX, gyrB and infB gene sequences showed a clear distinction of strains 30TX1T and DL20T among each other and to the closest related type strains. DNA-DNA hybridizations between strain DL20T and the type strain of X. ishibashii resulted in a relatedness value of 53 %. Genome-to-genome-based comparisons gave average nucleotide identities of 93.6 % (reciprocal 93.5 %) for strain 30TX1T and X. ehlersii DSM 16337T, of 92.8 % (reciprocal 93 %) for strain DL20T and X. ishibashiiDSM 22670Tand of 93.0 % (reciprocal 93.2 %) for the two novel strains. The fatty acid profile of the strains consisted of the major fatty acids C14 : 0, C16 : 0, C17 : 0 cyclo, C16 : 1ω7c and/or iso-C15 : 0 2-OH, and C18 : 1ω7c. Genome-to-genome comparison and MLSA results together with the differential biochemical and chemotaxonomic properties showed that strains 30TX1T and DL20T represent novel Xenorhabdus species, for which the names Xenorhabdus thuongxuanensis sp. nov. (type strain 30TX1T=CCM 8727T=LMG 29916T) and Xenorhabdus eapokensis sp. nov. (type strain DL20T=CCM 8728T=LMG 29917T) are proposed, respectively.
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Affiliation(s)
- Peter Kämpfer
- Institut für Angewandte Mikrobiologie, Universität Giessen, Giessen, Germany
| | - Nicholas J Tobias
- Fachbereich Biowissenschaften, Merck Stiftungsprofessur für Molekulare Biotechnologie, Goethe-Universität Frankfurt, Frankfurt am Main, Germany
| | - Long Phan Ke
- Department of Microbiology and Immunology, Faculty of Tropical Medicine, Mahidol University, Bangkok, Thailand
| | - Helge B Bode
- Fachbereich Biowissenschaften, Merck Stiftungsprofessur für Molekulare Biotechnologie, Goethe-Universität Frankfurt, Frankfurt am Main, Germany.,Buchmann Institute for Molecular Life Sciences, Goethe-Universität Frankfurt, Frankfurt am Main, Germany
| | - Stefanie P Glaeser
- Institut für Angewandte Mikrobiologie, Universität Giessen, Giessen, Germany
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Glaeser SP, Tobias NJ, Thanwisai A, Chantratita N, Bode HB, Kämpfer P. Photorhabdusluminescens subsp. namnaonensis subsp. nov., isolated from Heterorhabditisbaujardi nematodes. Int J Syst Evol Microbiol 2017; 67:1046-1051. [PMID: 28032540 DOI: 10.1099/ijsem.0.001761] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
A lightly yellowish-pigmented, oxidase-negative bacterial strain (PB45.5T) isolated from the Nam Nao district of Phetchabun in central Thailand was investigated to determine its taxonomic position. Cells of the isolate showed a rod shaped appearance. The strain stained Gram-negative. Strain PB45.5T shared highest 16S rRNA gene sequence similarity with the type strains of Photorhabdus luminescens subsp. akhurstii (99.2 %) and Photorhabdus luminescens subsp. hainanensis (99.1 %) and lower similarities to all other Photorhabdus luminescens subspecies (<98.0 %). Multilocus sequence analysis (MLSA) based on concatenated partial recA, dnaN, gltX, gyrB and infB gene sequences confirmed the affiliation obtained by 16S rRNA gene sequence analysis but showed a clear distinction of PB45.5T from the closest related type strains. Strain PB45.5T shared only 96.9 % sequence similarity (concatenated nucleotide sequences) with P. luminescens subsp. akhurstii FRG04T and 96.8 % with P. luminescens subsp. hainanensis C8404T. The fatty acid profile of the strain consisted of the major fatty acids C14 : 0, C16 : 0, C17 : 0 cyclo, C16 : 1ω7c and/or iso-C15 : 0 2-OH, and C18 : 1ω7c. The MLSA results and the differential biochemical and chemotaxonomic properties showed that strain PB45.5T represents a novel P. luminescens subspecies, for which the name Photorhabdus luminescens subsp. namnaonensis subsp. nov. (type strain PB45.5T=LMG 29915T=CCM 8729T) is proposed.
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Affiliation(s)
- Stefanie P Glaeser
- Institut für Angewandte Mikrobiologie, Universität Giessen, Giessen, Germany
| | - Nicholas J Tobias
- Fachbereich Biowissenschaften, Merck Stiftungsprofessur für Molekulare Biotechnologie, Goethe-Universität Frankfurt, Frankfurt am Main, Germany
| | - Aunchalee Thanwisai
- Department of Microbiology and Immunology, Faculty of Tropical Medicine, Mahidol University, Bangkok, Thailand
| | - Narisara Chantratita
- Department of Microbiology and Immunology, Faculty of Tropical Medicine, Mahidol University, Bangkok, Thailand
| | - Helge B Bode
- Fachbereich Biowissenschaften, Merck Stiftungsprofessur für Molekulare Biotechnologie, Goethe-Universität Frankfurt, Frankfurt am Main, Germany.,Buchmann Institute for Molecular Life Sciences, Goethe-Universität Frankfurt, Frankfurt am Main, Germany
| | - Peter Kämpfer
- Institut für Angewandte Mikrobiologie, Universität Giessen, Giessen, Germany
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McMullen JG, Peterson BF, Forst S, Blair HG, Stock SP. Fitness costs of symbiont switching using entomopathogenic nematodes as a model. BMC Evol Biol 2017; 17:100. [PMID: 28412935 PMCID: PMC5392933 DOI: 10.1186/s12862-017-0939-6] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2016] [Accepted: 03/16/2017] [Indexed: 05/09/2023] Open
Abstract
BACKGROUND Steinernematid nematodes form obligate symbioses with bacteria from the genus Xenorhabdus. Together Steinernema nematodes and their bacterial symbionts successfully infect, kill, utilize, and exit their insect hosts. During this process the nematodes and bacteria disassociate requiring them to re-associate before emerging from the host. This interaction can be complicated when two different nematodes co-infect an insect host. RESULTS Non-cognate nematode-bacteria pairings result in reductions for multiple measures of success, including total progeny production and virulence. Additionally, nematode infective juveniles carry fewer bacterial cells when colonized by a non-cognate symbiont. Finally, we show that Steinernema nematodes can distinguish heterospecific and some conspecific non-cognate symbionts in behavioral choice assays. CONCLUSIONS Steinernema-Xenorhabdus symbioses are tightly governed by partner recognition and fidelity. Association with non-cognates resulted in decreased fitness, virulence, and bacterial carriage of the nematode-bacterial pairings. Entomopathogenic nematodes and their bacterial symbionts are a useful, tractable, and reliable model for testing hypotheses regarding the evolution, maintenance, persistence, and fate of mutualisms.
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Affiliation(s)
- John G. McMullen
- School of Animal and Comparative Biomedical Sciences, University of Arizona, 117 East Lowell Street, PO Box 210090, Tucson, AZ 85721 USA
- Current address: Department of Entomology, Cornell University, 2130 Comstock Hall, Ithaca, NY 14853 USA
| | - Brittany F. Peterson
- Center for Insect Science, University of Arizona, 1007 E. Lowell St, Tucson, AZ 85721 USA
- Department of Entomology, University of Arizona, 11490 E. South Campus Dr, Tucson, AZ 85721 USA
| | - Steven Forst
- Department of Biological Sciences, University of Wisconsin, Milwaukee, Lapham Hall 458, Milwaukee, WI 53201-0413 USA
| | - Heidi Goodrich Blair
- Current address: Department of Microbiology, University of Tennessee-Knoxville, F331A Walters Life Sciences, Knoxville, TN 37996-0845 USA
| | - S. Patricia Stock
- School of Animal and Comparative Biomedical Sciences, University of Arizona, 117 East Lowell Street, PO Box 210090, Tucson, AZ 85721 USA
- Center for Insect Science, University of Arizona, 1007 E. Lowell St, Tucson, AZ 85721 USA
- Department of Entomology, University of Arizona, 11490 E. South Campus Dr, Tucson, AZ 85721 USA
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Kazimierczak W, Skrzypek H, Sajnaga E, Skowronek M, Waśko A, Kreft A. Strains of Photorhabdus spp. associated with polish Heterorhabditis isolates: their molecular and phenotypic characterization and symbiont exchange. Arch Microbiol 2017; 199:979-989. [PMID: 28382473 DOI: 10.1007/s00203-017-1368-z] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2017] [Revised: 03/10/2017] [Accepted: 03/15/2017] [Indexed: 12/24/2022]
Abstract
The relationships between six bacterial symbionts of the entomopathogenic nematodes Heterorhabditis bacteriophora and Heterorhabditis megidis from Poland to species and subspecies of the genus Photorhabdus were evaluated. This study was based on phylogenetic analysis of sequence data of five genes: 16S rRNA, gyrB, recA, gltX, and dnaN. The bacteria were also characterized phenotypically by biochemical and physiological tests. Our results have revealed that the Photorhabdus strains isolated from H. megidis belong to P. temperata, subsp. temperata and subsp. cinerea. Isolates from H. bacteriophora represent P. luminescens subs. kayaii and P. temperata subs. cinerea. This study for the first time provides evidence for H. bacteriophora and P. temperata subsp. cinerea symbiotic association. In addition, we tested whether the microsymbionts of the Polish H. bacteriophora and H. megidis isolates support the development of non-native nematode host population and colonization of their infective juveniles. It has been shown that the studied Photorhabdus strains can readily swap their nematode host, both at intra- and interspecies level. It supports the hypothesis of different symbiotic associations in the Heterorhabditis-Photorhabdus lineage.
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Affiliation(s)
- Waldemar Kazimierczak
- Laboratory of Biocontrol, Application and Production of EPN, Department of Biotechnology and Environmental Sciences, Centre for Interdisciplinary Research, John Paul II Catholic University of Lublin, ul. Konstantynów 1J, 20-708, Lublin, Poland.
| | - Henryk Skrzypek
- Laboratory of Ultrastructure and Electron Microscopy, Department of Biotechnology and Environmental Sciences, John Paul II Catholic University of Lublin, ul. Konstantynów 1F, 20-708, Lublin, Poland
| | - Ewa Sajnaga
- Laboratory of Biocontrol, Application and Production of EPN, Department of Biotechnology and Environmental Sciences, Centre for Interdisciplinary Research, John Paul II Catholic University of Lublin, ul. Konstantynów 1J, 20-708, Lublin, Poland
| | - Marcin Skowronek
- Laboratory of Biocontrol, Application and Production of EPN, Department of Biotechnology and Environmental Sciences, Centre for Interdisciplinary Research, John Paul II Catholic University of Lublin, ul. Konstantynów 1J, 20-708, Lublin, Poland
| | - Adam Waśko
- Department of Biotechnology, Human Nutrition and Science of Food Commodities, University of Life Sciences in Lublin, ul. Skromna 8, 20-704, Lublin, Poland
| | - Anna Kreft
- Laboratory of Biocontrol, Application and Production of EPN, Department of Biotechnology and Environmental Sciences, Centre for Interdisciplinary Research, John Paul II Catholic University of Lublin, ul. Konstantynów 1J, 20-708, Lublin, Poland
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Hata H, Natori T, Mizuno T, Kanazawa I, Eldesouky I, Hayashi M, Miyata M, Fukunaga H, Ohji S, Hosoyama A, Aono E, Yamazoe A, Tsuchikane K, Fujita N, Ezaki T. Phylogenetics of family Enterobacteriaceae and proposal to reclassify Escherichia hermannii and Salmonella subterranea as Atlantibacter hermannii and Atlantibacter subterranea gen. nov., comb. nov. Microbiol Immunol 2017; 60:303-11. [PMID: 26970508 DOI: 10.1111/1348-0421.12374] [Citation(s) in RCA: 38] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2015] [Revised: 02/25/2016] [Accepted: 03/07/2016] [Indexed: 11/27/2022]
Abstract
Multilocus sequence analysis based on hypervariable housekeeping proteins was utilized to differentiate closely related species in the family Enterobacteriaceae. Of 150 housekeeping proteins, the top 10 hypervariable proteins were selected and concatenated to obtain distance data. Distances between concatenated proteins within the family were 0.9-41.2%, whereas the 16S rRNA and atpD-gyrB-infB-rpoB concatenated sequence (4MLSA) distances were 0.8-6.0% and 0.9-22.1%, respectively. These data indicate that phylogenetic analysis by concatenation of hypervariable proteins is a powerful tool for discriminating species in the family Enterobacteriaceae. To confirm the discriminatory power of the 10 chosen concatenated hypervariable proteins (C10HKP), phylogenetic trees based on C10HKP, 4MLSA, and the 16S rRNA gene were constructed. Comparison of average bootstrap values among C10HKP, 4MLSA and 16S rRNA genes indicated that the C10HKP tree was the most reliable. Location via the C10HKP tree was consistent with existing assignments for almost all species in the family Enterobacteriaceae. However, the C10HKP tree suggested that several species (including Enterobacter massiliensis, Escherichia vulneris, Escherichia hermannii, and Salmonella subterranea) should be reassigned to different clusters than those defined in previous analyses. Furthermore, E. hermannii and S. subterranea appeared to fall onto a branch independent from those occupied by the other Enterobacteriaceae. Therefore, we propose Atlantibacter gen. nov., such that E. hermannii and S. subterranea would be transferred to genus Atlantibacter as Atlantibacter hermannii, comb. nov. and Atlantibacter subterranea. comb. nov., respectively.
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Affiliation(s)
- Hiroyuki Hata
- Department of Microbiology, Gifu University Graduate School of Medicine
| | - Tatsuya Natori
- Department of Microbiology, Gifu University Graduate School of Medicine
| | - Takuya Mizuno
- Department of Microbiology, Gifu University Graduate School of Medicine
| | - Izumi Kanazawa
- Department of Microbiology, Gifu University Graduate School of Medicine
| | - Ibrahim Eldesouky
- Department of Bacteriology, Mycology and Immunology, Faculty of Veterinary Medicine, Kafrelsheikh University, 33516, Egypt
| | - Masahiro Hayashi
- Division of Anaerobe Research, Life Science Research Center, Gifu University, 1-1 Yanagido, Gifu 501-1194
| | - Machiko Miyata
- Department of Microbiology, Gifu University Graduate School of Medicine
| | - Hajime Fukunaga
- Department of Microbiology, Gifu University Graduate School of Medicine
| | - Shoko Ohji
- Biological Resource Center, National Institute of Technology and Evaluation, 2-5-8, Kazusakamatari, Kisarazu-shi, Chiba 292-0818, Japan
| | - Akira Hosoyama
- Biological Resource Center, National Institute of Technology and Evaluation, 2-5-8, Kazusakamatari, Kisarazu-shi, Chiba 292-0818, Japan
| | - Eiji Aono
- Biological Resource Center, National Institute of Technology and Evaluation, 2-5-8, Kazusakamatari, Kisarazu-shi, Chiba 292-0818, Japan
| | - Atsushi Yamazoe
- Biological Resource Center, National Institute of Technology and Evaluation, 2-5-8, Kazusakamatari, Kisarazu-shi, Chiba 292-0818, Japan
| | - Keiko Tsuchikane
- Biological Resource Center, National Institute of Technology and Evaluation, 2-5-8, Kazusakamatari, Kisarazu-shi, Chiba 292-0818, Japan
| | - Nobuyuki Fujita
- Biological Resource Center, National Institute of Technology and Evaluation, 2-5-8, Kazusakamatari, Kisarazu-shi, Chiba 292-0818, Japan
| | - Takayuki Ezaki
- Department of Microbiology, Gifu University Graduate School of Medicine
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Bhat AH, Istkhar, Chaubey AK, Půža V, San-Blas E. First Report and Comparative Study of Steinernema surkhetense (Rhabditida: Steinernematidae) and its Symbiont Bacteria from Subcontinental India. J Nematol 2017; 49:92-102. [PMID: 28512381 PMCID: PMC5411258 DOI: 10.21307/jofnem-2017-049] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2016] [Indexed: 11/11/2022] Open
Abstract
Two populations (CS19 and CS20) of entomopathogenic nematodes were isolated from the soils of vegetable fields from Bijnor district, India. Based on morphological, morphometrical, and molecular studies, the nematodes were identified as Steinernema surkhetense. This work represents the first report of this species in India. The infective juveniles (IJs) showed morphometrical and morphological differences, with the original description based on longer IJs size. The IJs of the Indian isolates possess six ridges in their lateral field instead of eight reported in the original description. The analysis of ITS-rDNA sequences revealed nucleotide differences at 345, 608, and 920 positions in aligned data. No difference was observed in D2-D3 domain. The S. surkhetense COI gene was studied for the first time as well as the molecular characterization of their Xenorhabdus symbiont using the sequences of recA and gyrB genes revealing Xenorhabdus stockiae as its symbiont. These data, together with the finding of X. stockiae, suggest that this bacterium is widespread among South Asian nematodes from the "carpocapsae" group. Virulence of both isolates was tested on Spodoptera litura. The strain CS19 was capable to kill the larvae with 31.78 IJs at 72 hr, whereas CS20 needed 67.7 IJs.
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Affiliation(s)
- Aashiq Hussain Bhat
- Nematology Laboratory, Department of Zoology, Chaudhary Charan Singh University, Meerut-250004, India
| | - Istkhar
- Nematology Laboratory, Department of Zoology, Chaudhary Charan Singh University, Meerut-250004, India
| | - Ashok Kumar Chaubey
- Nematology Laboratory, Department of Zoology, Chaudhary Charan Singh University, Meerut-250004, India
| | - Vladimir Půža
- Institute of Entomology, Branišovská 31, 37005, České Budějovice, Czech Republic
| | - Ernesto San-Blas
- Instituto Venezolano de Investigaciones Científicas, Centro de Estudios Botánicos y Agroforestales, Laboratorio de Protección Vegetal, Calle 79 con Av. 8 (Santa Rita), Maracaibo, Venezuela C.P. 4001
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62
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Park Y, Kang S, Sadekuzzaman M, Kim H, Jung JK, Kim Y. Identification and bacterial characteristics of Xenorhabdus hominickii ANU101 from an entomopathogenic nematode, Steinernema monticolum. J Invertebr Pathol 2017; 144:74-87. [PMID: 28193447 DOI: 10.1016/j.jip.2017.02.002] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2016] [Revised: 01/12/2017] [Accepted: 02/08/2017] [Indexed: 12/15/2022]
Abstract
An entomopathogenic nematode, Steinernema monticolum, was collected in Korea. Its identity was confirmed by morphological and molecular characters. Its symbiotic bacterium, Xenorhabdus hominickii ANU101, was isolated and assessed in terms of bacterial characteristics. Sixty-eight different carbon sources were utilized by X. hominickii ANU101 out of 95 different sources from a Biolog assay. Compared to other Xenorhabdus species, X. hominickii ANU101 was relatively susceptible to high temperatures and did not grow above 34°C. Furthermore, its growth rate was much slower than other Xenorhabdus species. X. hominickii exhibited insecticidal activities against coleopteran, dipteran, and lepidopteran insect pests. The bacterial virulence was not correlated with its host nematode virulence with respect to relative insecticidal activity against target insects. X. hominickii ANU101 exhibited antibiotics tolerance. The bacterium possesses four different plasmids (Xh-P1 (104,132bp), Xh-P2 (95,975bp), Xh-P3 (88,536bp), and Xh-P4 (11,403bp)) and encodes 332 open reading frames. Subsequent predicted genes include toxin/antitoxins comprising a multidrug export ATP-binding/permease. This study reports bacterial characters of X. hominickii and its entomopathogenicity.
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Affiliation(s)
- Youngjin Park
- Department of Bioresource Sciences, Andong National University, Andong 36729, Republic of Korea
| | - Sangjin Kang
- Bongwha County, 1111 Bonghwa-ro, Bonghwa 36239, Republic of Korea
| | - Md Sadekuzzaman
- Department of Bioresource Sciences, Andong National University, Andong 36729, Republic of Korea
| | - Hyeonghwan Kim
- Horticultural & Herbal Crop Environment Division, National Institute of Horticultural & Herbal Science, RDA, Wanju 55365, Republic of Korea
| | - Jin-Kyo Jung
- Division of Crop Cultivation and Environment Research, Department of Central Area Crop Science, National Institute of Crop Science, Rural Development Administration, Suwon 16429, Republic of Korea
| | - Yonggyun Kim
- Department of Bioresource Sciences, Andong National University, Andong 36729, Republic of Korea.
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63
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Maher AMD, Asaiyah MAM, Brophy C, Griffin CT. An Entomopathogenic Nematode Extends Its Niche by Associating with Different Symbionts. MICROBIAL ECOLOGY 2017; 73:211-223. [PMID: 27543560 DOI: 10.1007/s00248-016-0829-2] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/20/2016] [Accepted: 08/02/2016] [Indexed: 06/06/2023]
Abstract
Bacterial symbionts are increasingly recognised as mediators of ecologically important traits of their animal hosts, with acquisition of new traits possible by uptake of novel symbionts. The entomopathogenic nematode Heterorhabditis downesi associates with two bacterial symbionts, Photorhabdus temperata subsp. temperata and P. temperata subsp. cinerea. At one intensively studied coastal dune site, P. temperata subsp. cinerea is consistently more frequently isolated than P. temperata subsp. temperata in H. downesi recovered from under the bare sand/Ammophila arrenaria of the front dunes (where harsh conditions, including drought, prevail). This is not the case in the more permissive closed dune grassland further from the sea. No differences were detected in ITS1 (internal transcribed spacer) sequence between nematode lines carrying either of the two symbiont subspecies, nor did they differ in their ability to utilise insects from three orders. The two symbionts could be readily swapped between lines, and both were carried in equal numbers within infective juveniles. In laboratory experiments, we tested whether the symbionts differentially affected nematode survival in insect cadavers that were allowed to dry. We assessed numbers of nematode infective juveniles emerging from insects that had been infected with H. downesi carrying either symbiont subspecies and then allowed to desiccate for up to 62 days. In moist conditions, cadavers produced similar numbers of nematodes, irrespective of the symbiont subspecies present, while under desiccating conditions, P. temperata subsp. cinerea cadavers yielded more nematode progeny than P. temperata subsp. temperata cadavers. Desiccating cadavers with the same nematode isolates, carrying either one or the other symbiont subspecies, confirmed that the symbiont was responsible for differences in nematode survival. Moreover, cadavers harbouring P. temperata subsp. cinerea had a reduced rate of drying relative to cadavers harbouring P. temperata subsp. temperata. Our experiments support the hypothesis that H. downesi can extend its niche into harsher conditions by associating with P. temperata subsp. cinerea.
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Affiliation(s)
- Abigail M D Maher
- Department of Biology, Maynooth University, Maynooth, County Kildare, Ireland
| | - Mohamed A M Asaiyah
- Department of Biology, Maynooth University, Maynooth, County Kildare, Ireland
- Department of Biology, Azzaytuna University, Tarhouna, Libya
| | - Caroline Brophy
- Department of Mathematics and Statistics, Maynooth University, Maynooth, County Kildare, Ireland
| | - Christine T Griffin
- Department of Biology, Maynooth University, Maynooth, County Kildare, Ireland.
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64
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Genome-based phylogeny and taxonomy of the ‘Enterobacteriales’: proposal for Enterobacterales ord. nov. divided into the families Enterobacteriaceae, Erwiniaceae fam. nov., Pectobacteriaceae fam. nov., Yersiniaceae fam. nov., Hafniaceae fam. nov., Morganellaceae fam. nov., and Budviciaceae fam. nov. Int J Syst Evol Microbiol 2016; 66:5575-5599. [DOI: 10.1099/ijsem.0.001485] [Citation(s) in RCA: 556] [Impact Index Per Article: 69.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022] Open
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65
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Molecular and phenotypic characterization of Xenorhabdus bovienii symbiotically associated with Steinernema silvaticum. Arch Microbiol 2016; 198:995-1003. [PMID: 27342112 DOI: 10.1007/s00203-016-1261-1] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2016] [Revised: 06/13/2016] [Accepted: 06/15/2016] [Indexed: 10/21/2022]
Abstract
Steinernema silvaticum is a common entomopathogenic nematode in soil of Europe; however, little is known about the bacteria living in symbiosis with this animal. In this study, we have isolated four bacterial strains from S. silvaticum and identified them as members of the species Xenorhabdus bovienii. This study was based on 16S rRNA and concatenated recA, dnaN, gltX, and gyrB gene sequence analysis. In addition, phenotypic traits have been considered, indicating that the tested strains are the most similar to those of X. bovienii. The phylogenetic relationships between the isolated strains and other strains of X. bovienii derived from various nematode hosts were analyzed and discussed. This is the first report confirming the symbiotic association of X. bovienii with S. silvaticum.
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66
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First Report of the Isolation of the Symbiotic Bacterium Photorhabdus luminescens subsp. laumondii Associated with Heterorhabditis safricana from South Africa. Curr Microbiol 2016; 73:790-795. [PMID: 27567899 DOI: 10.1007/s00284-016-1116-7] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2016] [Accepted: 08/03/2016] [Indexed: 10/21/2022]
Abstract
Photorhabdus luminescens subsp. laumondii is closely associated with the entomopathogenic nematode Heterorhabditis bacteriophora and has, to date, not been isolated from other nematode species. This study is the first report of P. luminescens subsp. laumondii from two South African isolates of entomopathogenic nematodes, Heterorhabditis safricana SF281 and H. bacteriophora SF351. Both symbiotic bacterial strains are phenotypically closely related to P. luminescens subsp. laumondii previously isolated and described from H. bacteriophora. The genetic relatedness between P. luminescens subsp. laumondii strains SF281B and SF351B was confirmed by comparing 16S rDNA, recA, gyrB and gltX sequences with sequences of P. luminescens subsp. laumondii, including the type strain (TT01T) and strain E21.
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67
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Tobias NJ, Mishra B, Gupta DK, Sharma R, Thines M, Stinear TP, Bode HB. Genome comparisons provide insights into the role of secondary metabolites in the pathogenic phase of the Photorhabdus life cycle. BMC Genomics 2016; 17:537. [PMID: 27488257 PMCID: PMC4971723 DOI: 10.1186/s12864-016-2862-4] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2016] [Accepted: 06/29/2016] [Indexed: 01/28/2023] Open
Abstract
Background Bacteria within the genus Photorhabdus maintain mutualistic symbioses with nematodes in complicated lifecycles that also involves insect pathogenic phases. Intriguingly, these bacteria are rich in biosynthetic gene clusters that produce compounds with diverse biological activities. As a basis to better understand the life cycles of Photorhabdus we sequenced the genomes of two recently discovered representative species and performed detailed genomic comparisons with five publically available genomes. Results Here we report the genomic details of two new reference Photorhabdus species. By then conducting genomic comparisons across the genus, we show that there are several highly conserved biosynthetic gene clusters. These clusters produce a range of bioactive small molecules that support the pathogenic phase of the integral relationship that Photorhabdus maintain with nematodes. Conclusions Photorhabdus contain several genetic loci that allow them to become specialist insect pathogens by efficiently evading insect immune responses and killing the insect host. Electronic supplementary material The online version of this article (doi:10.1186/s12864-016-2862-4) contains supplementary material, which is available to authorized users.
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Affiliation(s)
- Nicholas J Tobias
- Fachbereich Biowissenschaften, Merck Stiftungsprofessur für Molekulare Biotechnologie, Goethe Universität Frankfurt, Frankfurt am Main, Germany
| | - Bagdevi Mishra
- Biodiversity and Climate Research Centre (BiK-F), Senckenberg Gesellschaft für Naturforschung, Senckenberganlage 25, 60325, Frankfurt am Main, Germany.,Fachbereich Biowissenschaften, Institut für Ökologie, Evolution und Diversität, Goethe Universität Frankfurt, Max-von-Laue-Str. 13, 60438, Frankfurt am Main, Germany
| | - Deepak K Gupta
- Biodiversity and Climate Research Centre (BiK-F), Senckenberg Gesellschaft für Naturforschung, Senckenberganlage 25, 60325, Frankfurt am Main, Germany.,Fachbereich Biowissenschaften, Institut für Ökologie, Evolution und Diversität, Goethe Universität Frankfurt, Max-von-Laue-Str. 13, 60438, Frankfurt am Main, Germany
| | - Rahul Sharma
- Biodiversity and Climate Research Centre (BiK-F), Senckenberg Gesellschaft für Naturforschung, Senckenberganlage 25, 60325, Frankfurt am Main, Germany
| | - Marco Thines
- Biodiversity and Climate Research Centre (BiK-F), Senckenberg Gesellschaft für Naturforschung, Senckenberganlage 25, 60325, Frankfurt am Main, Germany.,Fachbereich Biowissenschaften, Institut für Ökologie, Evolution und Diversität, Goethe Universität Frankfurt, Max-von-Laue-Str. 13, 60438, Frankfurt am Main, Germany
| | - Timothy P Stinear
- Department of Microbiology and Immunology, University of Melbourne, at the Doherty Institute for Infection and Immunity, Parkville, VIC, 3010, Australia
| | - Helge B Bode
- Fachbereich Biowissenschaften, Merck Stiftungsprofessur für Molekulare Biotechnologie, Goethe Universität Frankfurt, Frankfurt am Main, Germany. .,Buchmann Institute for Molecular Life Sciences (BMLS), Goethe Universität Frankfurt, Frankfurt am Main, Germany.
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68
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Joyce SA, Lango L, Clarke DJ. The Regulation of Secondary Metabolism and Mutualism in the Insect Pathogenic Bacterium Photorhabdus luminescens. ADVANCES IN APPLIED MICROBIOLOGY 2016; 76:1-25. [PMID: 21924970 DOI: 10.1016/b978-0-12-387048-3.00001-5] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Abstract
Photorhabdus is a genus of insect-pathogenic Gram-negative bacteria that also maintain a mutualistic interaction with nematodes from the family Heterorhabditis. This complex life cycle, involving different interactions with different invertebrate hosts, coupled with the amenability of the system to laboratory culture has resulted in the development of Photorhabdus as a model system for studying bacterial-host interactions. Photorhabdus is predicted to have an extensive secondary metabolism with the genetic potential to produce >20 different small secondary metabolites. Therefore, this system also presents us with a unique opportunity to study the contribution of secondary metabolism to the environmental fitness of the producing organism in its natural habitat (i.e., the insect and/or the nematode). In vivo and in vitro studies have revealed that the vast majority of the genetic loci in Photorhabdus predicted to be involved in the production of secondary metabolites appear to be cryptic and, to date, although several have been characterized, only three compounds have been studied in any great detail: 3,5-dihydroxy-4-isopropylstilbene, the β-lactam antibiotic carbapenem, and an anthraquinone pigment. In this chapter, we describe how these compounds are made and the role (if any) that they have during the interactions between Photorhabdus and its invertebrate hosts. We will also outline recent work on the regulation of secondary metabolism in Photorhabdus and comment on how this has led to an increased understanding of mutualism in this bacterium.
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Affiliation(s)
- Susan A Joyce
- Department of Microbiology, University College Cork, Cork, Ireland
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69
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Cimen H, Půža V, NermuŤ J, Hatting J, Ramakuwela T, Hazir S. Steinernema biddulphi n. sp., a New Entomopathogenic Nematode (Nematoda: Steinernematidae) from South Africa. J Nematol 2016; 48:148-158. [PMID: 27765988 DOI: 10.21307/jofnem-2017-022] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022] Open
Abstract
A new species of entomopathogenic nematode (EPN), Steinernema biddulphi n. sp., was isolated from a maize field in Senekal, Free State Province of South Africa. Morphological and molecular studies indicated the distinctness of S. biddulphi n. sp. from other Steinernema species. Steinernema biddulphi n. sp. is characterized IJs with average body length of 663 μm (606-778 μm), lateral fields with six ridges in mid-body region forming the formula 2,6,2. Excretory pore located anterior to mid-pharynx (D% = 46). Hyaline layer occupies approximately half of tail length. Male spicules slightly to moderately curved, with a sharp tip and golden brown in color. The first generation of males lacking a mucron on the tail tip while the second generation males with a short filamentous mucron. Genital papillae with 11 pairs and one unpaired preanal papilla. The new species is further characterized by sequences of the internal transcribed spacer (ITS) and partial 28S regions (D2-D3) of the ribosomal DNA (rDNA). Phylogenetic data show that S. biddulphi n. sp. belongs to the "bicornutum" clade within the Steinernematidae family.
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Affiliation(s)
- Harun Cimen
- Department of Biology, Faculty of Arts and Science, Adnan Menderes University, 09010 Aydin, Turkey
| | - Vladimír Půža
- Laboratory of Entomopathogenic Nematodes, Institute of Entomology, Biology Centre, Czech Academy of Sciences, Branišovská 31, 370 05, České Budějovice, The Czech Republic
| | - JiŘí NermuŤ
- Laboratory of Entomopathogenic Nematodes, Institute of Entomology, Biology Centre, Czech Academy of Sciences, Branišovská 31, 370 05, České Budějovice, The Czech Republic
| | - Justin Hatting
- South African Agricultural Research Council, Small Grain Institute, Private Bag X29, Bethlehem, 9701, South Africa
| | - Tshima Ramakuwela
- South African Agricultural Research Council, Small Grain Institute, Private Bag X29, Bethlehem, 9701, South Africa
| | - Selcuk Hazir
- Department of Biology, Faculty of Arts and Science, Adnan Menderes University, 09010 Aydin, Turkey
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70
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Çimen H, Půža V, Nermuť J, Hatting J, Ramakuwela T, Faktorová L, Hazir S. Steinernema beitlechemi n. sp., a new entomopathogenic nematode (Nematoda: Steinernematidae) from South Africa. NEMATOLOGY 2016. [DOI: 10.1163/15685411-00002968] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
Abstract
Steinernema beitlechemi n. sp. is a new species of entomopathogenic nematode isolated from soil samples collected in Bethlehem, Free State province, South Africa. The infective juveniles of S. beitlechemi n. sp. are characterised by a body length of 696 (606-768) μm, position of nerve ring of 96 (86-105) μm from the head and lateral fields with six ridges (i.e., seven lines) in mid-body. First-generation males of S. beitlechemi n. sp. can be distinguished by a spicule length of 93 (88-100) μm and 12 pairs of genital papillae. First-generation females have a moderately protruding vulva and a rounded tail tip bearing one spine-like projection. The new species is further characterised by sequences of the ITS and partial 28S regions of the ribosomal DNA. Phylogenetic analyses show S. beitlechemi n. sp. as a member of a strongly supported monophyletic clade with three other African species: S. sacchari, S. cameroonense and S. nyetense.
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Affiliation(s)
- Harun Çimen
- Department of Biology, Faculty of Arts and Science, Adnan Menderes University, 09010 Aydin, Turkey
| | - Vladimír Půža
- Laboratory of Entomopathogenic Nematodes, Institute of Entomology, Biology Centre, Czech Academy of Sciences, Branišovská 31, 370 05, České Budějovice, The Czech Republic
| | - Jiří Nermuť
- Laboratory of Entomopathogenic Nematodes, Institute of Entomology, Biology Centre, Czech Academy of Sciences, Branišovská 31, 370 05, České Budějovice, The Czech Republic
| | - Justin Hatting
- South African Agricultural Research Council, Small Grain Institute, Private Bag X29, Bethlehem, 9701, South Africa
| | - Tshima Ramakuwela
- South African Agricultural Research Council, Small Grain Institute, Private Bag X29, Bethlehem, 9701, South Africa
| | - Lucie Faktorová
- Laboratory of Entomopathogenic Nematodes, Institute of Entomology, Biology Centre, Czech Academy of Sciences, Branišovská 31, 370 05, České Budějovice, The Czech Republic
| | - Selcuk Hazir
- Department of Biology, Faculty of Arts and Science, Adnan Menderes University, 09010 Aydin, Turkey
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Mulley G, Beeton ML, Wilkinson P, Vlisidou I, Ockendon-Powell N, Hapeshi A, Tobias NJ, Nollmann FI, Bode HB, van den Elsen J, ffrench-Constant RH, Waterfield NR. From Insect to Man: Photorhabdus Sheds Light on the Emergence of Human Pathogenicity. PLoS One 2015; 10:e0144937. [PMID: 26681201 PMCID: PMC4683029 DOI: 10.1371/journal.pone.0144937] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2015] [Accepted: 11/25/2015] [Indexed: 12/27/2022] Open
Abstract
Photorhabdus are highly effective insect pathogenic bacteria that exist in a mutualistic relationship with Heterorhabditid nematodes. Unlike other members of the genus, Photorhabdus asymbiotica can also infect humans. Most Photorhabdus cannot replicate above 34°C, limiting their host-range to poikilothermic invertebrates. In contrast, P. asymbiotica must necessarily be able to replicate at 37°C or above. Many well-studied mammalian pathogens use the elevated temperature of their host as a signal to regulate the necessary changes in gene expression required for infection. Here we use RNA-seq, proteomics and phenotype microarrays to examine temperature dependent differences in transcription, translation and phenotype of P. asymbiotica at 28°C versus 37°C, relevant to the insect or human hosts respectively. Our findings reveal relatively few temperature dependant differences in gene expression. There is however a striking difference in metabolism at 37°C, with a significant reduction in the range of carbon and nitrogen sources that otherwise support respiration at 28°C. We propose that the key adaptation that enables P. asymbiotica to infect humans is to aggressively acquire amino acids, peptides and other nutrients from the human host, employing a so called “nutritional virulence” strategy. This would simultaneously cripple the host immune response while providing nutrients sufficient for reproduction. This might explain the severity of ulcerated lesions observed in clinical cases of Photorhabdosis. Furthermore, while P. asymbiotica can invade mammalian cells they must also resist immediate killing by humoral immunity components in serum. We observed an increase in the production of the insect Phenol-oxidase inhibitor Rhabduscin normally deployed to inhibit the melanisation immune cascade. Crucially we demonstrated this molecule also facilitates protection against killing by the alternative human complement pathway.
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Affiliation(s)
- Geraldine Mulley
- School of Biological Sciences, University of Reading, Whiteknights, Reading, RG6 6AJ, United Kingdom
| | - Michael L Beeton
- Cardiff School of Health Sciences, Cardiff Metropolitan University, Llandaff Campus, Western Avenue, Cardiff, CF5 2YB, United Kingdom
| | - Paul Wilkinson
- Life Sciences Building, Bristol University, 24 Tyndall Avenue, Bristol, BS8 1TQ, United Kingdom
| | - Isabella Vlisidou
- Life Sciences Building, Bristol University, 24 Tyndall Avenue, Bristol, BS8 1TQ, United Kingdom
| | - Nina Ockendon-Powell
- Primary Care Unit, Microbiology Department, Public Health England, Gloucester Royal Hospital, Great Western Road, Gloucester, GL1 3NN, United Kingdom
| | - Alexia Hapeshi
- Division of Biomedical Sciences, Warwick Medical School, Medical School Building, The University of Warwick, Gibbet Hill Road, Coventry, CV4 7AL, United Kingdom
| | - Nick J Tobias
- Buchmann Center for Life Sciences (BMLS), Fachbereich Biowissenschaften, Goethe Universität Frankfurt, 60438, Frankfurt, Germany
| | - Friederike I Nollmann
- Buchmann Center for Life Sciences (BMLS), Fachbereich Biowissenschaften, Goethe Universität Frankfurt, 60438, Frankfurt, Germany
| | - Helge B Bode
- Buchmann Center for Life Sciences (BMLS), Fachbereich Biowissenschaften, Goethe Universität Frankfurt, 60438, Frankfurt, Germany
| | - Jean van den Elsen
- Department of Biology & Biochemistry, University of Bath, Claverton Down, Bath, BA2 7AY, United Kingdom
| | | | - Nicholas R Waterfield
- Division of Biomedical Sciences, Warwick Medical School, Medical School Building, The University of Warwick, Gibbet Hill Road, Coventry, CV4 7AL, United Kingdom
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72
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Complete genome sequence of Photorhabdus temperata subsp. thracensis 39-8 T, an entomopathogenic bacterium for the improved commercial bioinsecticide. J Biotechnol 2015; 214:115-6. [PMID: 26415660 DOI: 10.1016/j.jbiotec.2015.09.024] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2015] [Accepted: 09/22/2015] [Indexed: 11/24/2022]
Abstract
Photorhabdus temperata subsp. thracensis 39-8(T), a symbiotic bacterium from an entomopathogenic nematode Heterorhabditis bacteriophora, is a novel bacterium harboring insect pathogenicity. Herein, we present the complete genome sequence of strain 39-8(T), which consists of one circular chromosome of 5,147,098 bp with a GC content of 44.10%. This genetic information will provide insights into biotechnological applications of the genus Photorhabdus producing insecticidal toxins, leading to the enhanced commercial bioinsecticide in agricultural pest control.
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73
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Elucidation of the Photorhabdus temperata Genome and Generation of a Transposon Mutant Library To Identify Motility Mutants Altered in Pathogenesis. J Bacteriol 2015; 197:2201-2216. [PMID: 25917908 DOI: 10.1128/jb.00197-15] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2015] [Accepted: 04/17/2015] [Indexed: 11/20/2022] Open
Abstract
UNLABELLED The entomopathogenic nematode Heterorhabditis bacteriophora forms a specific mutualistic association with its bacterial partner Photorhabdus temperata. The microbial symbiont is required for nematode growth and development, and symbiont recognition is strain specific. The aim of this study was to sequence the genome of P. temperata and identify genes that plays a role in the pathogenesis of the Photorhabdus-Heterorhabditis symbiosis. A draft genome sequence of P. temperata strain NC19 was generated. The 5.2-Mb genome was organized into 17 scaffolds and contained 4,808 coding sequences (CDS). A genetic approach was also pursued to identify mutants with altered motility. A bank of 10,000 P. temperata transposon mutants was generated and screened for altered motility patterns. Five classes of motility mutants were identified: (i) nonmotile mutants, (ii) mutants with defective or aberrant swimming motility, (iii) mutant swimmers that do not require NaCl or KCl, (iv) hyperswimmer mutants that swim at an accelerated rate, and (v) hyperswarmer mutants that are able to swarm on the surface of 1.25% agar. The transposon insertion sites for these mutants were identified and used to investigate other physiological properties, including insect pathogenesis. The motility-defective mutant P13-7 had an insertion in the RNase II gene and showed reduced virulence and production of extracellular factors. Genetic complementation of this mutant restored wild-type activity. These results demonstrate a role for RNA turnover in insect pathogenesis and other physiological functions. IMPORTANCE The relationship between Photorhabdus and entomopathogenic nematode Heterorhabditis represents a well-known mutualistic system that has potential as a biological control agent. The elucidation of the genome of the bacterial partner and role that RNase II plays in its life cycle has provided a greater understanding of Photorhabdus as both an insect pathogen and a nematode symbiont.
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74
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Brameyer S, Kresovic D, Bode HB, Heermann R. LuxR solos in Photorhabdus species. Front Cell Infect Microbiol 2014; 4:166. [PMID: 25478328 PMCID: PMC4235431 DOI: 10.3389/fcimb.2014.00166] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2014] [Accepted: 10/24/2014] [Indexed: 01/18/2023] Open
Abstract
Bacteria communicate via small diffusible molecules to mediate group-coordinated behavior, a process designated as quorum sensing. The basic molecular quorum sensing system of Gram-negative bacteria consists of a LuxI-type autoinducer synthase producing acyl-homoserine lactones (AHLs) as signaling molecules, and a LuxR-type receptor detecting the AHLs to control expression of specific genes. However, many proteobacteria possess one or more unpaired LuxR-type receptors that lack a cognate LuxI-like synthase, referred to as LuxR solos. The enteric and insect pathogenic bacteria of the genus Photorhabdus harbor an extraordinarily high number of LuxR solos, more than any other known bacteria, and all lack a LuxI-like synthase. Here, we focus on the presence and the different types of LuxR solos in the three known Photorhabdus species using bioinformatics analyses. Generally, the N-terminal signal-binding domain (SBD) of LuxR-type receptors sensing AHLs have a motif of six conserved amino acids that is important for binding and specificity of the signaling molecule. However, this motif is altered in the majority of the Photorhabdus-specific LuxR solos, suggesting the use of other signaling molecules than AHLs. Furthermore, all Photorhabdus species contain at least one LuxR solo with an intact AHL-binding motif, which might allow the ability to sense AHLs of other bacteria. Moreover, all three species have high AHL-degrading activity caused by the presence of different AHL-lactonases and AHL-acylases, revealing a high quorum quenching activity against other bacteria. However, the majority of the other LuxR solos in Photorhabdus have a N-terminal so-called PAS4-domain instead of an AHL-binding domain, containing different amino acid motifs than the AHL-sensors, which potentially allows the recognition of a highly variable range of signaling molecules that can be sensed apart from AHLs. These PAS4-LuxR solos are proposed to be involved in host sensing, and therefore in inter-kingdom signaling. Overall, Photorhabdus species are perfect model organisms to study bacterial communication via LuxR solos and their role for a symbiotic and pathogenic life style.
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Affiliation(s)
- Sophie Brameyer
- Bereich Mikrobiologie, Biozentrum, Ludwig-Maximilians-Universität München München, Germany
| | - Darko Kresovic
- Fachbereich Biowissenschaften, Merck Stiftungsprofessur für Molekulare Biotechnologie, Goethe-Universität Frankfurt Frankfurt am Main, Germany
| | - Helge B Bode
- Fachbereich Biowissenschaften, Merck Stiftungsprofessur für Molekulare Biotechnologie, Goethe-Universität Frankfurt Frankfurt am Main, Germany
| | - Ralf Heermann
- Bereich Mikrobiologie, Biozentrum, Ludwig-Maximilians-Universität München München, Germany
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75
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First report of the symbiotic bacterium Xenorhabdus indica associated with the entomopathogenic nematode Steinernema yirgalemense. J Helminthol 2014; 90:108-12. [DOI: 10.1017/s0022149x14000583] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Abstract
AbstractThe entomopathogenic nematode Steinernema yirgalemense is considered a promising agent in the biocontrol of insects. However, little is known about the bacteria living in symbiosis with the nematode. In this study, we have identified the only available bacterial strain (157-C) isolated from S. yirgalemense, as a member of the species Xenorhabdus indica. Identification was based on 16S rDNA, recA, dnaN, gltX, gyrB and infB gene sequence analyses. The relatedness of strain 157-C to the type strain of X. indica (DSM 17 382) was confirmed with DNA–DNA hybridization. The phenotypic characteristics of strain 157-C are similar to those described for the type strain of X. indica. This is the first report associating X. indica with S. yirgalemense.
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76
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Interference competition in entomopathogenic nematodes: male Steinernema kill members of their own and other species. Int J Parasitol 2014; 44:1009-17. [PMID: 25110292 DOI: 10.1016/j.ijpara.2014.07.004] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2014] [Revised: 07/01/2014] [Accepted: 07/04/2014] [Indexed: 11/21/2022]
Abstract
There is evidence of competition within and between helminth species, but the mechanisms involved are not well described. In interference competition, organisms prevent each other from using the contested resource through direct negative interactions, either chemical or physical. Steinernema spp. are entomopathogenic nematodes; they enter a living insect host which they kill and consume with the aid of symbiotic bacteria. Several studies have demonstrated intra- and interspecific competition in Steinernema, mediated by a scramble for resources and by incompatibility of the bacterial symbiont. Here we describe a mechanism by which male Steinernema may compete directly for resources, both food (host) and females, by physically injuring or killing members of another species as well as males of their own species. A series of experiments was conducted in hanging drops of insect haemolymph. Males of each of four species (Steinernemalongicaudum, Steinernemacarpocapsae, Steinernemakraussei and Steinernemafeltiae), representing three of the five phylogenetic clades of the genus, killed each other. Within 48h, up to 86% of pairs included at least one dead male, compared with negligible mortality in single male controls. There was evidence of intraspecific difference: one strain of S. feltiae (4CFMO) killed while another (UK76) did not. Males also killed both females and males of other Steinernema spp. There was evidence of a hierarchy of killing, with highest mortality due to S. longicaudum followed by S. carpocapsae, S. kraussei and S. feltiae. Wax moth larvae were co-infected with members of two Steinernema spp. to confirm that killing also takes place in the natural environment of an insect cadaver. When insects were co-infected with one infective juvenile of each species, S. longicaudum males killed both S. feltiae UK76 and Steinernema hermaphroditum. Wax moths co-infected with larger, equal numbers of S. longicaudum and S. feltiae UK76 produced mainly S. longicaudum progeny, as expected based on hanging drop experiments.
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77
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Ogier JC, Pagès S, Bisch G, Chiapello H, Médigue C, Rouy Z, Teyssier C, Vincent S, Tailliez P, Givaudan A, Gaudriault S. Attenuated virulence and genomic reductive evolution in the entomopathogenic bacterial symbiont species, Xenorhabdus poinarii. Genome Biol Evol 2014; 6:1495-513. [PMID: 24904010 PMCID: PMC4079199 DOI: 10.1093/gbe/evu119] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023] Open
Abstract
Bacteria of the genus Xenorhabdus are symbionts of soil entomopathogenic nematodes of the genus Steinernema. This symbiotic association constitutes an insecticidal complex active against a wide range of insect pests. Unlike other Xenorhabdus species, Xenorhabdus poinarii is avirulent when injected into insects in the absence of its nematode host. We sequenced the genome of the X. poinarii strain G6 and the closely related but virulent X. doucetiae strain FRM16. G6 had a smaller genome (500–700 kb smaller) than virulent Xenorhabdus strains and lacked genes encoding potential virulence factors (hemolysins, type 5 secretion systems, enzymes involved in the synthesis of secondary metabolites, and toxin–antitoxin systems). The genomes of all the X. poinarii strains analyzed here had a similar small size. We did not observe the accumulation of pseudogenes, insertion sequences or decrease in coding density usually seen as a sign of genomic erosion driven by genetic drift in host-adapted bacteria. Instead, genome reduction of X. poinarii seems to have been mediated by the excision of genomic blocks from the flexible genome, as reported for the genomes of attenuated free pathogenic bacteria and some facultative mutualistic bacteria growing exclusively within hosts. This evolutionary pathway probably reflects the adaptation of X. poinarii to specific host.
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Affiliation(s)
- Jean-Claude Ogier
- INRA, UMR Diversité, Génomes et Interactions Microorganismes-Insectes (DGIMI), Montpellier, FranceUniversité Montpellier 2, UMR Diversité, Génomes et Interactions Microorganismes-Insectes (DGIMI), France
| | - Sylvie Pagès
- INRA, UMR Diversité, Génomes et Interactions Microorganismes-Insectes (DGIMI), Montpellier, FranceUniversité Montpellier 2, UMR Diversité, Génomes et Interactions Microorganismes-Insectes (DGIMI), France
| | - Gaëlle Bisch
- INRA, UMR Diversité, Génomes et Interactions Microorganismes-Insectes (DGIMI), Montpellier, FranceUniversité Montpellier 2, UMR Diversité, Génomes et Interactions Microorganismes-Insectes (DGIMI), France
| | - Hélène Chiapello
- INRA Toulouse Midi-Pyrénées, Unité MIA-T, Chemin de Borde Rouge, Castanet-Tolosan, France
| | - Claudine Médigue
- CEA, Genoscope & CNRS, UMR 8030, Laboratoire d'Analyse Bioinformatique en Génomique et Métabolisme, Evry, France
| | - Zoé Rouy
- CEA, Genoscope & CNRS, UMR 8030, Laboratoire d'Analyse Bioinformatique en Génomique et Métabolisme, Evry, France
| | - Corinne Teyssier
- Université Montpellier 1, UFR des Sciences Pharmaceutiques et Biologiques/UMR95 Qualisud, CIRAD-Persyst, France
| | - Stéphanie Vincent
- CEA, Genoscope & CNRS, UMR 8030, Laboratoire d'Analyse Bioinformatique en Génomique et Métabolisme, Evry, France
| | - Patrick Tailliez
- INRA, UMR Diversité, Génomes et Interactions Microorganismes-Insectes (DGIMI), Montpellier, FranceUniversité Montpellier 2, UMR Diversité, Génomes et Interactions Microorganismes-Insectes (DGIMI), France
| | - Alain Givaudan
- INRA, UMR Diversité, Génomes et Interactions Microorganismes-Insectes (DGIMI), Montpellier, FranceUniversité Montpellier 2, UMR Diversité, Génomes et Interactions Microorganismes-Insectes (DGIMI), France
| | - Sophie Gaudriault
- INRA, UMR Diversité, Génomes et Interactions Microorganismes-Insectes (DGIMI), Montpellier, FranceUniversité Montpellier 2, UMR Diversité, Génomes et Interactions Microorganismes-Insectes (DGIMI), France
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78
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Ferreira T, van Reenen CA, Endo A, Tailliez P, Pagès S, Spröer C, Malan AP, Dicks LMT. Photorhabdus heterorhabditis sp. nov., a symbiont of the entomopathogenic nematode Heterorhabditis zealandica. Int J Syst Evol Microbiol 2014; 64:1540-1545. [PMID: 24478206 DOI: 10.1099/ijs.0.059840-0] [Citation(s) in RCA: 45] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
The bacterial symbionts SF41T and SF783 were isolated from populations of the insect pathogenic nematode Heterorhabditis zealandica collected in South Africa. Both strains were closely related to strain Q614 isolated from a population of Heterorhabditis sp. collected from soil in Australia in the 1980s. Sequence analysis based on a multigene approach, DNA-DNA hybridization data and phenotypic traits showed that strains SF41T, SF783 and Q614 belong to the same species of the genus Photorhabdus with Photorhabdus temperata subsp. cinerea as the most closely related taxon (DNA-DNA hybridization value of 68%). Moreover, the phylogenetic position of Photorhabdus temperata subsp. cinerea DSM 19724T initially determined using the gyrB sequences, was reconsidered in the light of the data obtained by our multigene approach and DNA-DNA hybridization experiments. Strains SF41T, SF783 and Q614 represent a novel species of the genus Photorhabdus, for which the name Photorhabdus heterorhabditis sp. nov. is proposed (type strain SF41T=ATCC BAA-2479T=DSM 25263T).
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Affiliation(s)
- Tiarin Ferreira
- Department of Conservation Ecology and Entomology, Stellenbosch University, Private Bag X1, 7602 Matieland, Stellenbosch, South Africa
| | - Carol A van Reenen
- Department of Microbiology, Stellenbosch University, Private Bag X1, 7602 Matieland, Stellenbosch, South Africa
| | - Akihito Endo
- Department of Microbiology, Stellenbosch University, Private Bag X1, 7602 Matieland, Stellenbosch, South Africa
| | - Patrick Tailliez
- INRA, UMR1333 Diversité, Génomes & Interactions Microorganismes-Insectes (DGIMI), F-34000 Montpellier, France.,Université Montpellier 2, UMR1333 Diversité, Génomes & Interactions Microorganismes-Insectes (DGIMI), F-34000 Montpellier, France
| | - Sylvie Pagès
- INRA, UMR1333 Diversité, Génomes & Interactions Microorganismes-Insectes (DGIMI), F-34000 Montpellier, France.,Université Montpellier 2, UMR1333 Diversité, Génomes & Interactions Microorganismes-Insectes (DGIMI), F-34000 Montpellier, France
| | - Cathrin Spröer
- DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen, Inhoffenstrasse 7B, 38124 Braunschweig, Germany
| | - Antoinette P Malan
- Department of Conservation Ecology and Entomology, Stellenbosch University, Private Bag X1, 7602 Matieland, Stellenbosch, South Africa
| | - Leon M T Dicks
- Department of Microbiology, Stellenbosch University, Private Bag X1, 7602 Matieland, Stellenbosch, South Africa
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79
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Dunlap P. Biochemistry and Genetics of Bacterial Bioluminescence. ADVANCES IN BIOCHEMICAL ENGINEERING/BIOTECHNOLOGY 2014; 144:37-64. [DOI: 10.1007/978-3-662-43385-0_2] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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80
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Phan KL, Mráček Z, Půža V, Nermut J, Jarošová A. Steinernema huense sp. n., a new entomopathogenic nematode (Nematoda: Steinernematidae) from Vietnam. NEMATOLOGY 2014. [DOI: 10.1163/15685411-00002806] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
Abstract
A new entomopathogenic nematode, Steinernema huense sp. n., belonging to the carpocapsae group, was recovered in Bach Ma National Park (Thua Thien Hue province) Vietnam. Steinernema huense sp. n. infective juveniles are characterised by short body length of 527 (444-571) μm, distance from anterior end to excretory pore of 43 (38-46) μm, anterior end to end of pharynx of 116 (103-129) μm; tail length of 50 (43-56) μm, D% = 37 (34-39) and E% = 85 (79-93), H% = 44 (39-52) and in having six ridges (i.e., seven lines) in the lateral field. For first generation males, the diagnostic characters include the spicule length of 67 (60-72) μm; D% = 48 (41-61); SW% = 195 (168-238) and GS% = 76 (68-81). Both generations possess a minute filamentous mucron, which can be rudimentary in the first generation, and 23 genital papillae. Spicules are finely curved, brownish and slender with a prominent rostrum. First generation females have a non-protruding, symmetrical vulva, with double flapped epiptygma. The tail of mature females is obese with a short conical tip (peg) lacking minute protuberances, and post-anal swelling not developed. The new species is further characterised by sequences of ITS and D2-D3 regions of the ribosomal DNA. According to molecular data, the symbiotic bacterium of S. huense sp. n. is closely related to Xenorhabdus stockiae.
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Affiliation(s)
- Ke Long Phan
- Vietnam National Museum of Nature, Vietnam Academy of Sciences and Technology, 18 Hoang Quoc Viet, Caugiay, Hanoi, Vietnam
| | - Zdeněk Mráček
- Laboratory of Entomopathogenic Nematodes, Institute of Entomology, Biology Centre, Czech Academy of Sciences, Branišovská 31, 370 05, České Budějovice, The Czech Republic
| | - Vladimír Půža
- Laboratory of Entomopathogenic Nematodes, Institute of Entomology, Biology Centre, Czech Academy of Sciences, Branišovská 31, 370 05, České Budějovice, The Czech Republic
| | - Jiří Nermut
- Laboratory of Entomopathogenic Nematodes, Institute of Entomology, Biology Centre, Czech Academy of Sciences, Branišovská 31, 370 05, České Budějovice, The Czech Republic
| | - Andrea Jarošová
- Laboratory of Entomopathogenic Nematodes, Institute of Entomology, Biology Centre, Czech Academy of Sciences, Branišovská 31, 370 05, České Budějovice, The Czech Republic
- Faculty of Sciences, University of South Bohemia, Branišovská 31, 370 05, České Budějovice, The Czech Republic
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81
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Nishanth Kumar S, Nath VS, Pratap Chandran R, Nambisan B. Cyclic dipeptides from rhabditid entomopathogenic nematode-associated Bacillus cereus have antimicrobial activities. World J Microbiol Biotechnol 2013; 30:439-49. [DOI: 10.1007/s11274-013-1461-7] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2013] [Accepted: 08/10/2013] [Indexed: 11/30/2022]
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82
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Kumar SN, Nambisan B, Sundaresan A, Mohandas C, Anto RJ. Isolation and identification of antimicrobial secondary metabolites from Bacillus cereus associated with a rhabditid entomopathogenic nematode. ANN MICROBIOL 2013. [DOI: 10.1007/s13213-013-0653-6] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022] Open
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83
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Ferreira T, van Reenen C, Pagès S, Tailliez P, Malan AP, Dicks LMT. Photorhabdus luminescens subsp. noenieputensis subsp. nov., a symbiotic bacterium associated with a novel Heterorhabditis species related to Heterorhabditis indica. Int J Syst Evol Microbiol 2013; 63:1853-1858. [DOI: 10.1099/ijs.0.044388-0] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
The bacterial symbiont AM7T, isolated from a novel entomopathogenic nematode species of the genus Heterorhabditis, displays the main phenotypic traits of the genus
Photorhabdus
and is highly pathogenic to Galleria mellonella. Phylogenetic analysis based on a multigene approach (16S rRNA, recA, gyrB, dnaN, gltX and infB) confirmed the classification of isolate AM7T within the species
Photorhabdus luminescens
and revealed its close relatedness to
Photorhabdus luminescens subsp. caribbeanensis
,
P. luminescens subsp. akhurstii
and
P. luminescens subsp. hainanensis
. The five concatenated protein-encoding sequences (4197 nt) of strain AM7T revealed 95.8, 95.4 and 94.9 % nucleotide identity to sequences of
P. luminescens subsp. caribbeanensis
HG29T,
P. luminescens subsp. akhurstii
FRG04T and
P. luminescens subsp. hainanensis
C8404T, respectively. These identity values are less than the threshold of 97 % proposed for classification within one of the existing subspecies of
P. luminescens
. Unlike other strains described for
P. luminescens
, strain AM7T produces acid from adonitol, sorbitol and xylitol, assimilates xylitol and has no lipase activity on medium containing Tween 20 or 60. Strain AM7T is differentiated from
P. luminescens subsp. caribbeanensis
by the assimilation of N-acetylglucosamine and the absence of haemolytic activity. Unlike
P. luminescens subsp. akhurstii
, strain AM7T does not assimilate mannitol, and it is distinguished from
P. luminescens subsp. hainanensis
by the assimilation of trehalose and citrate, the inability to produce indole from tryptophan and the presence of acetoin production and urease activity. Strain AM7T ( = ATCC BAA-2407T = DSM 25462T) belongs to a novel subspecies, and is proposed as the type strain of Photorhabdus luminescens subsp. noenieputensis sp. nov.
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Affiliation(s)
- Tiarin Ferreira
- Department of Conservation Ecology and Entomology, Stellenbosch University, Private Bag X1, 7602 Matieland, South Africa
| | - Carol van Reenen
- Department of Microbiology, Stellenbosch University, Private Bag X1, 7602 Matieland, Stellenbosch, South Africa
| | - Sylvie Pagès
- Université Montpellier 2, UMR1333 Diversité, Génomes & Interactions Microorganismes-Insectes (DGIMI), F-34000 Montpellier, France
- INRA, UMR1333 Diversité, Génomes & Interactions Microorganismes-Insectes (DGIMI), F-34000 Montpellier, France
| | - Patrick Tailliez
- Université Montpellier 2, UMR1333 Diversité, Génomes & Interactions Microorganismes-Insectes (DGIMI), F-34000 Montpellier, France
- INRA, UMR1333 Diversité, Génomes & Interactions Microorganismes-Insectes (DGIMI), F-34000 Montpellier, France
| | - Antoinette P. Malan
- Department of Conservation Ecology and Entomology, Stellenbosch University, Private Bag X1, 7602 Matieland, South Africa
| | - Leon M. T. Dicks
- Department of Microbiology, Stellenbosch University, Private Bag X1, 7602 Matieland, Stellenbosch, South Africa
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84
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Kuwata R, Qiu LH, Wang W, Harada Y, Yoshida M, Kondo E, Yoshiga T. Xenorhabdus ishibashii sp. nov., isolated from the entomopathogenic nematode Steinernema aciari. Int J Syst Evol Microbiol 2013; 63:1690-1695. [DOI: 10.1099/ijs.0.041145-0] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Gram-negative bacteria of the genus
Xenorhabdus
exhibit a mutualistic association with steinernematid entomopathogenic nematodes and a pathogenic relationship with insects. Here we describe two isolates of the entomopathogenic nematode Steinernema aciari collected from China and Japan. 16S rRNA gene sequence similarity and phylogenetic analysis indicated that the isolates obtained from S. aciari belonged to the genus
Xenorhabdus
. Multilocus sequence analysis based on five universal protein-coding gene sequences revealed that the isolates were closely related to
Xenorhabdus ehlersii
DSM 16337T and
Xenorhabdus griffiniae
ID10T but that they exhibited <97 % sequence similarity with these reference strains, which indicated that the isolates were distinct from previously described species. Based on these genetic differences and several differential phenotypic traits, we propose that the isolates represent a novel species of the genus
Xenorhabdus
, for which we propose the name Xenorhabdus ishibashii sp. nov. The type strain is GDh7T ( = DSM 22670T = CGMCC 1.9166T).
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Affiliation(s)
- Ryusei Kuwata
- Laboratory of Nematology, Faculty of Agriculture, Saga University, 1 Honjo, Saga, Saga 840-8502, Japan
| | - Li-hong Qiu
- State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-sen University, Guangzhou 510275, PR China
| | - Wen Wang
- State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-sen University, Guangzhou 510275, PR China
| | - Yuki Harada
- Laboratory of Nematology, Faculty of Agriculture, Saga University, 1 Honjo, Saga, Saga 840-8502, Japan
| | - Mutsuhiro Yoshida
- Agro-Environment Research Division, Kyushu Okinawa Agricultural Research Center, 2421 Suya, Koshi, Kumamoto 861-1192, Japan
| | - Eizo Kondo
- Laboratory of Nematology, Faculty of Agriculture, Saga University, 1 Honjo, Saga, Saga 840-8502, Japan
| | - Toyoshi Yoshiga
- Laboratory of Nematology, Faculty of Agriculture, Saga University, 1 Honjo, Saga, Saga 840-8502, Japan
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85
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Ferreira T, van Reenen CA, Endo A, Spröer C, Malan AP, Dicks LMT. Description of Xenorhabdus khoisanae sp. nov., the symbiont of the entomopathogenic nematode Steinernema khoisanae. Int J Syst Evol Microbiol 2013; 63:3220-3224. [PMID: 23456807 DOI: 10.1099/ijs.0.049049-0] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Bacterial strain SF87(T), and additional strains SF80, SF362 and 106-C, isolated from the nematode Steinernema khoisanae, are non-bioluminescent Gram-reaction-negative bacteria that share many of the carbohydrate fermentation reactions recorded for the type strains of recognized Xenorhabdus species. Based on 16S rRNA gene sequence data, strain SF87(T) is shown to be closely related (98% similarity) to Xenorhabdus hominickii DSM 17903(T). Nucleotide sequences of strain SF87 obtained from the recA, dnaN, gltX, gyrB and infB genes showed 96-97% similarity with Xenorhabdus miraniensis DSM 17902(T). However, strain SF87 shares only 52.7% DNA-DNA relatedness with the type strain of X. miraniensis, confirming that it belongs to a different species. Strains SF87(T), SF80, SF362 and 106-C are phenotypically similar to X. miraniensis and X. beddingii, except that they do not produce acid from aesculin. These strains are thus considered to represent a novel species of the genus Xenorhabdus, for which the name Xenorhabdus khoisanae sp. nov. is proposed. The type strain is SF87(T) ( =DSM 25463(T) =ATCC BAA-2406(T)).
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Affiliation(s)
- Tiarin Ferreira
- Department of Conservation Ecology and Entomology, University of Stellenbosch, Private Bag X1, 7602 Matieland, South Africa
| | - Carol A van Reenen
- Department of Microbiology, University of Stellenbosch, Private Bag X1, 7602 Matieland, South Africa
| | - Akihito Endo
- Department of Microbiology, University of Stellenbosch, Private Bag X1, 7602 Matieland, South Africa
| | - Cathrin Spröer
- DSMZ - Deutsche Sammlung von Mikroorganismen und Zellkulturen, Inhoffenstrasse 7B, 38124 Braunschweig, Germany
| | - Antoinette P Malan
- Department of Conservation Ecology and Entomology, University of Stellenbosch, Private Bag X1, 7602 Matieland, South Africa
| | - Leon M T Dicks
- Department of Microbiology, University of Stellenbosch, Private Bag X1, 7602 Matieland, South Africa
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86
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Thanwisai A, Tandhavanant S, Saiprom N, Waterfield NR, Ke Long P, Bode HB, Peacock SJ, Chantratita N. Diversity of Xenorhabdus and Photorhabdus spp. and their symbiotic entomopathogenic nematodes from Thailand. PLoS One 2012; 7:e43835. [PMID: 22984446 PMCID: PMC3440396 DOI: 10.1371/journal.pone.0043835] [Citation(s) in RCA: 45] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2012] [Accepted: 07/30/2012] [Indexed: 11/19/2022] Open
Abstract
Xenorhabdus and Photorhabdus spp. are bacterial symbionts of entomopathogenic nematodes (EPNs). In this study, we isolated and characterized Xenorhabdus and Photorhabdus spp. from across Thailand together with their associated nematode symbionts, and characterized their phylogenetic diversity. EPNs were isolated from soil samples using a Galleria-baiting technique. Bacteria from EPNs were cultured and genotyped based on recA sequence. The nematodes were identified based on sequences of 28S rDNA and internal transcribed spacer regions. A total of 795 soil samples were collected from 159 sites in 13 provinces across Thailand. A total of 126 EPNs isolated from samples taken from 10 provinces were positive for Xenorhabdus (n = 69) or Photorhabdus spp. (n = 57). Phylogenetic analysis separated the 69 Xenorhabdus isolates into 4 groups. Groups 1, 2 and 3 consisting of 52, 13 and 1 isolates related to X. stockiae, and group 4 consisting of 3 isolates related to X. miraniensis. The EPN host for isolates related to X. stockiae was S. websteri, and for X. miraniensis was S. khoisanae. The Photorhabdus species were identified as P. luminescens (n = 56) and P. asymbiotica (n = 1). Phylogenenic analysis divided P. luminescens into five groups. Groups 1 and 2 consisted of 45 and 8 isolates defined as subspecies hainanensis and akhurstii, respectively. One isolate was related to hainanensis and akhurstii, two isolates were related to laumondii, and one isolate was the pathogenic species P. asymbiotica subsp. australis. H. indica was the major EPN host for Photorhabdus. This study reveals the genetic diversity of Xenorhabdus and Photorhabdus spp. and describes new associations between EPNs and their bacterial symbionts in Thailand.
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Affiliation(s)
- Aunchalee Thanwisai
- Department of Microbiology and Immunology, Faculty of Tropical Medicine, Mahidol University, Bangkok, Thailand
- Mahidol-Oxford Tropical Medicine Research Unit, Faculty of Tropical Medicine, Mahidol University, Bangkok, Thailand
| | - Sarunporn Tandhavanant
- Department of Microbiology and Immunology, Faculty of Tropical Medicine, Mahidol University, Bangkok, Thailand
- Mahidol-Oxford Tropical Medicine Research Unit, Faculty of Tropical Medicine, Mahidol University, Bangkok, Thailand
| | - Natnaree Saiprom
- Department of Microbiology and Immunology, Faculty of Tropical Medicine, Mahidol University, Bangkok, Thailand
| | - Nick R. Waterfield
- Department of Biology and Biochemistry, University of Bath, Bath, United Kingdom
| | - Phan Ke Long
- Vietnam National Museum of Nature, Vietnam Academy of Science and Technology, Caugiay, Hanoi, Vietnam
| | - Helge B. Bode
- Molecular Biotechnology, Institute for Molecular Biosciences, Goethe University Frankfurt, Frankfurt, Germany
| | - Sharon J. Peacock
- Department of Microbiology and Immunology, Faculty of Tropical Medicine, Mahidol University, Bangkok, Thailand
- Mahidol-Oxford Tropical Medicine Research Unit, Faculty of Tropical Medicine, Mahidol University, Bangkok, Thailand
- Department of Medicine, University of Cambridge, Addenbrooke's Hospital, Cambridge, United Kingdom
| | - Narisara Chantratita
- Department of Microbiology and Immunology, Faculty of Tropical Medicine, Mahidol University, Bangkok, Thailand
- Mahidol-Oxford Tropical Medicine Research Unit, Faculty of Tropical Medicine, Mahidol University, Bangkok, Thailand
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87
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Sugar DR, Murfin KE, Chaston JM, Andersen AW, Richards GR, deLéon L, Baum JA, Clinton WP, Forst S, Goldman BS, Krasomil-Osterfeld KC, Slater S, Stock SP, Goodrich-Blair H. Phenotypic variation and host interactions of Xenorhabdus bovienii SS-2004, the entomopathogenic symbiont of Steinernema jollieti nematodes. Environ Microbiol 2011; 14:924-39. [PMID: 22151385 DOI: 10.1111/j.1462-2920.2011.02663.x] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
Abstract
Xenorhabdus bovienii (SS-2004) bacteria reside in the intestine of the infective-juvenile (IJ) stage of the entomopathogenic nematode, Steinernema jollieti. The recent sequencing of the X. bovienii genome facilitates its use as a model to understand host - symbiont interactions. To provide a biological foundation for such studies, we characterized X. bovienii in vitro and host interaction phenotypes. Within the nematode host X. bovienii was contained within a membrane bound envelope that also enclosed the nematode-derived intravesicular structure. Steinernema jollieti nematodes cultivated on mixed lawns of X. bovienii expressing green or DsRed fluorescent proteins were predominantly colonized by one or the other strain, suggesting the colonizing population is founded by a few cells. Xenorhabdus bovienii exhibits phenotypic variation between orange-pigmented primary form and cream-pigmented secondary form. Each form can colonize IJ nematodes when cultured in vitro on agar. However, IJs did not develop or emerge from Galleria mellonella insects infected with secondary form. Unlike primary-form infected insects that were soft and flexible, secondary-form infected insects retained a rigid exoskeleton structure. Xenorhabdus bovienii primary and secondary form isolates are virulent towards Manduca sexta and several other insects. However, primary form stocks present attenuated virulence, suggesting that X. bovienii, like Xenorhabdus nematophila may undergo virulence modulation.
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Affiliation(s)
- Darby R Sugar
- Department of Bacteriology, University of Wisconsin-Madison, Madison, WI, USA
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88
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Tailliez P, Pagès S, Edgington S, Tymo LM, Buddie AG. Description of Xenorhabdus magdalenensis sp. nov., the symbiotic bacterium associated with Steinernema australe. Int J Syst Evol Microbiol 2011; 62:1761-1765. [PMID: 21948091 DOI: 10.1099/ijs.0.034322-0] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
A symbiotic bacterium, strain IMI 397775(T), was isolated from the insect-pathogenic nematode Steinernema australe. On the basis of 16S rRNA gene sequence similarity, this bacterial isolate was shown to belong to the genus Xenorhabdus, in agreement with the genus of its nematode host. The accurate phylogenetic position of this new isolate was defined using a multigene approach and showed that isolate IMI 397775(T) shares a common ancestor with Xenorhabdus doucetiae FRM16(T) and Xenorhabdus romanii PR06-A(T), the symbiotic bacteria associated with Steinernema diaprepesi and Steinernema puertoricense, respectively. The nucleotide identity (less than 97%) between isolate IMI 397775(T), X. doucetiae FRM16(T) and X. romanii PR06-A(T) calculated for the concatenated sequences of five gene fragments encompassing 4275 nt, several phenotypic traits and the difference between the upper temperatures that limit growth of these three bacteria allowed genetic and phenotypic differentiation of isolate IMI 397775(T) from the two closely related species. Strain IMI 397775(T) therefore represents a novel species, for which the name Xenorhabdus magdalenensis sp. nov. is proposed, with the type strain IMI 397775(T) ( = DSM 24915(T)).
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Affiliation(s)
- Patrick Tailliez
- Université Montpellier 2, UMR1333 Diversité, Génomes & Interactions Microorganismes-Insectes (DGIMI), F-34000 Montpellier, France.,INRA, UMR1333 Diversité, Génomes & Interactions Microorganismes-Insectes (DGIMI), F-34000 Montpellier, France
| | - Sylvie Pagès
- Université Montpellier 2, UMR1333 Diversité, Génomes & Interactions Microorganismes-Insectes (DGIMI), F-34000 Montpellier, France.,INRA, UMR1333 Diversité, Génomes & Interactions Microorganismes-Insectes (DGIMI), F-34000 Montpellier, France
| | | | - Lukasz M Tymo
- CABI Europe-UK, Bakeham Lane, Egham, Surrey TW20 9TY, UK
| | - Alan G Buddie
- CABI Europe-UK, Bakeham Lane, Egham, Surrey TW20 9TY, UK
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89
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Maneesakorn P, An R, Daneshvar H, Taylor K, Bai X, Adams BJ, Grewal PS, Chandrapatya A. Phylogenetic and cophylogenetic relationships of entomopathogenic nematodes (Heterorhabditis: Rhabditida) and their symbiotic bacteria (Photorhabdus: Enterobacteriaceae). Mol Phylogenet Evol 2011; 59:271-80. [PMID: 21335093 DOI: 10.1016/j.ympev.2011.02.012] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2010] [Revised: 01/06/2011] [Accepted: 02/13/2011] [Indexed: 11/29/2022]
Abstract
Mutualistic association between entomopathogenic Photorhabdus bacteria and Heterorhabditis nematodes represents one of the emerging model systems in symbiosis studies, yet little is known about this partnership from a coevolutionary perspective. Herein, we investigated phylogenetic and cophylogenetic relationships of Heterorhabditis and Photorhabdus strains using molecular markers Internal Transcribed Spacer and gyrase B gene sequences, respectively. The phylogenies presented consistent, well supported, monophyletic groups in the parsimonious and likelihood analyses for both the nematode and bacterial strains and supported the placement of currently recognized taxa, from which a potentially new Heterorhabditis species represented by a Thailand strain MP68 was identified. While the nematode strains with distant geographic distributions showed no detectable phylogenetic divergence within H. bacteriophora or H. georgiana monophyletic groups, their respective symbiotic bacteria speciated into two Photorhabdus species: P. luminescens and P. temperata, indicating the occurrence of duplication. Although such evolutionary process reduces the phylogenetic congruence between Heterorhabditis nematodes and Photorhabdus bacteria, global cophylogenetic tests using ParaFit detected a highly significant correlation between the two phylogenies (ParaFitGlobal = 0.001). Further, the associations between H. zealandica, H. indica and H. megidis strains and their symbiotic bacteria exhibited significant contribution to the overall cophylogenetic structure. Overall, this study reveals evidence of coevolution between Photorhabdus bacteria and Heterorhabditis nematodes and provides a framework for further examination of the evolution of these associations.
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90
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Peat SM, ffrench-Constant RH, Waterfield NR, Marokházi J, Fodor A, Adams BJ. A robust phylogenetic framework for the bacterial genus Photorhabdus and its use in studying the evolution and maintenance of bioluminescence: A case for 16S, gyrB, and glnA. Mol Phylogenet Evol 2010; 57:728-40. [DOI: 10.1016/j.ympev.2010.08.012] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2010] [Revised: 08/11/2010] [Accepted: 08/12/2010] [Indexed: 10/19/2022]
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91
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Ogier JC, Calteau A, Forst S, Goodrich-Blair H, Roche D, Rouy Z, Suen G, Zumbihl R, Givaudan A, Tailliez P, Médigue C, Gaudriault S. Units of plasticity in bacterial genomes: new insight from the comparative genomics of two bacteria interacting with invertebrates, Photorhabdus and Xenorhabdus. BMC Genomics 2010; 11:568. [PMID: 20950463 PMCID: PMC3091717 DOI: 10.1186/1471-2164-11-568] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2010] [Accepted: 10/15/2010] [Indexed: 11/25/2022] Open
Abstract
Background Flexible genomes facilitate bacterial evolution and are classically organized into polymorphic strain-specific segments called regions of genomic plasticity (RGPs). Using a new web tool, RGPFinder, we investigated plasticity units in bacterial genomes, by exhaustive description of the RGPs in two Photorhabdus and two Xenorhabdus strains, belonging to the Enterobacteriaceae and interacting with invertebrates (insects and nematodes). Results RGPs account for about 60% of the genome in each of the four genomes studied. We classified RGPs into genomic islands (GIs), prophages and two new classes of RGP without the features of classical mobile genetic elements (MGEs) but harboring genes encoding enzymes catalyzing DNA recombination (RGPmob), or with no remarkable feature (RGPnone). These new classes accounted for most of the RGPs and are probably hypervariable regions, ancient MGEs with degraded mobilization machinery or non canonical MGEs for which the mobility mechanism has yet to be described. We provide evidence that not only the GIs and the prophages, but also RGPmob and RGPnone, have a mosaic structure consisting of modules. A module is a block of genes, 0.5 to 60 kb in length, displaying a conserved genomic organization among the different Enterobacteriaceae. Modules are functional units involved in host/environment interactions (22-31%), metabolism (22-27%), intracellular or intercellular DNA mobility (13-30%), drug resistance (4-5%) and antibiotic synthesis (3-6%). Finally, in silico comparisons and PCR multiplex analysis indicated that these modules served as plasticity units within the bacterial genome during genome speciation and as deletion units in clonal variants of Photorhabdus. Conclusions This led us to consider the modules, rather than the entire RGP, as the true unit of plasticity in bacterial genomes, during both short-term and long-term genome evolution.
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Affiliation(s)
- Jean-Claude Ogier
- INRA, UMR 1133, Laboratoire EMIP, Place Eugène Bataillon, F-34095 Montpellier, France
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