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Rosling A, Cox F, Cruz-Martinez K, Ihrmark K, Grelet GA, Lindahl BD, Menkis A, James TY. Archaeorhizomycetes: unearthing an ancient class of ubiquitous soil fungi. Science 2011; 333:876-9. [PMID: 21836015 DOI: 10.1126/science.1206958] [Citation(s) in RCA: 176] [Impact Index Per Article: 13.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Abstract
Estimates suggest that only one-tenth of the true fungal diversity has been described. Among numerous fungal lineages known only from environmental DNA sequences, Soil Clone Group 1 is the most ubiquitous. These globally distributed fungi may dominate below-ground fungal communities, but their placement in the fungal tree of life has been uncertain. Here, we report cultures of this group and describe the class, Archaeorhizomycetes, phylogenetically placed within subphylum Taphrinomycotina in the Ascomycota. Archaeorhizomycetes comprises hundreds of cryptically reproducing filamentous species that do not form recognizable mycorrhizal structures and have saprotrophic potential, yet are omnipresent in roots and rhizosphere soil and show ecosystem and host root habitat specificity.
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Affiliation(s)
- Anna Rosling
- Department of Forest Mycology and Pathology, Uppsala BioCentre, SLU, Box 7026, 750 07 Uppsala, Sweden.
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Aučina A, Rudawska M, Leski T, Ryliškis D, Pietras M, Riepšas E. Ectomycorrhizal fungal communities on seedlings and conspecific trees of Pinus mugo grown on the coastal dunes of the Curonian Spit in Lithuania. MYCORRHIZA 2011; 21:237-245. [PMID: 20938693 PMCID: PMC3058383 DOI: 10.1007/s00572-010-0341-3] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/30/2010] [Accepted: 09/30/2010] [Indexed: 05/30/2023]
Abstract
Ectomycorrhizal (ECM) communities of mature trees and regenerating seedlings of a non-native tree species Pinus mugo grown in a harsh environment of the coastal region of the Curonian Spit National Park in Lithuania were assessed. We established three study sites (S1, S2, and S3) that were separated from each other by 15 km. The ECM species richness was rather low in particular for mature, 100-year-old trees: 12 ectomycorrhizal taxa were identified by molecular analysis from 11 distinguished morphotypes. All 12 taxa were present on seedlings and on mature trees, with between 8-11 and 9-11 taxa present on seedlings and mature trees, respectively. Cenococcum geophilum dominated all ECM communities, but the relative abundance of C. geophilum mycorrhizas was nearly two times higher on seedlings than on mature trees. Mycorrhizal associations formed by Wilcoxina sp., Lactarius rufus, and Russula paludosa were also abundant. Several fungal taxa were only occasionally detected, including Cortinarius sp., Cortinarius obtusus, Cortinarius croceus, and Meliniomyces sp. Shannon's diversity indices for the ECM assemblages of P. mugo ranged from 0.98 to 1.09 for seedling and from 1.05 to 1.31 for mature trees. According to analysis of similarity, the mycorrhizal communities were similar between the sites (R = 0.085; P = 0.06) and only slightly separated between seedlings and mature trees (R = 0.24; P < 0.0001). An incidental fruiting body survey that was conducted weakly reflected the below-ground assessment of the ECM fungal community and once again showed that ECM and fruiting body studies commonly supply different partial accounts of the true ECM fungal diversity. Our results show that P. mugo has moved into quite distinct habitats and is able to adapt a suite of ECM symbionts that sufficiently support growth and development of this tree and allow for natural seedling regeneration.
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Affiliation(s)
- Algis Aučina
- Botanical Garden of Vilnius University, 43 Kairėnų Str, 10239 Vilnius-40, Lithuania
| | - Maria Rudawska
- Institute of Dendrology, Polish Academy of Sciences, 5 Parkowa Str., 62-035 Kórnik, Poland
| | - Tomasz Leski
- Institute of Dendrology, Polish Academy of Sciences, 5 Parkowa Str., 62-035 Kórnik, Poland
| | - Darius Ryliškis
- Botanical Garden of Vilnius University, 43 Kairėnų Str, 10239 Vilnius-40, Lithuania
| | - Marcin Pietras
- Institute of Dendrology, Polish Academy of Sciences, 5 Parkowa Str., 62-035 Kórnik, Poland
| | - Edvardas Riepšas
- Department of Sylviculture, Lithuanian University of Agriculture, 11 Studentų Str, Akademija, 53361 Kaunas district Lithuania
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53
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Benucci GMN, Raggi L, Albertini E, Grebenc T, Bencivenga M, Falcinelli M, Di Massimo G. Ectomycorrhizal communities in a productive Tuber aestivum Vittad. orchard: composition, host influence and species replacement. FEMS Microbiol Ecol 2011; 76:170-84. [DOI: 10.1111/j.1574-6941.2010.01039.x] [Citation(s) in RCA: 44] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022] Open
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54
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Leski T, Aucina A, Skridaila A, Pietras M, Riepsas E, Rudawska M. Ectomycorrhizal community structure of different genotypes of Scots pine under forest nursery conditions. MYCORRHIZA 2010; 20:473-481. [PMID: 20155377 DOI: 10.1007/s00572-010-0298-2] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/23/2009] [Accepted: 01/20/2010] [Indexed: 05/28/2023]
Abstract
In this paper, we report the effect of Scots pine genotypes on ectomycorrhizal (ECM) community and growth, survival, and foliar nutrient composition of 2-year-old seedlings grown in forest bare-root nursery conditions in Lithuania. The Scots pine seeds originated from five stands from Latvia (P1), Lithuania (P2 and P3), Belarus (P4), and Poland (P5). Based on molecular identification, seven ECM fungal taxa were identified: Suillus luteus and Suillus variegatus (within the Suilloid type), Wilcoxina mikolae, Tuber sp., Thelephora terrestris, Cenococcum geophilum, and Russuloid type. The fungal species richness varied between five and seven morphotypes, depending on seed origin. The average species richness and relative abundance of most ECM morphotypes differed significantly depending on pine origin. The most essential finding of our study is the shift in dominance from an ascomycetous fungus like W. mikolae in P2 and P4 seedlings to basidiomycetous Suilloid species like S. luteus and S. variegatus in P1 and P5 seedlings. Significant differences between Scots pine origin were also found in seedling height, root dry weight, survival, and concentration of C, K, Ca, and Mg in the needles. The Spearman rank correlation coefficient revealed that survival and nutritional status of pine seedlings were positively correlated with abundance of Suilloid mycorrhizas and negatively linked with W. mikolae abundance. However, stepwise multiple regression analysis showed that only survival and magnesium content in pine needles were significantly correlated with abundance of ECM fungi, and Suilloid mycorrhizas were a main significant predictor. Our results may have implications for understanding the physiological and genetic relationship between the host tree and fungi and should be considered in management decisions in forestry and ECM fungus inoculation programs.
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Affiliation(s)
- Tomasz Leski
- Institute of Dendrology, Polish Academy of Sciences, 5 Parkowa Str., 62-035 Kórnik, Poland
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55
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Vaario LM, Pennanen T, Sarjala T, Savonen EM, Heinonsalo J. Ectomycorrhization of Tricholoma matsutake and two major conifers in Finland-an assessment of in vitro mycorrhiza formation. MYCORRHIZA 2010; 20:511-8. [PMID: 20177716 DOI: 10.1007/s00572-010-0304-8] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/30/2009] [Accepted: 01/29/2010] [Indexed: 05/23/2023]
Abstract
This study aimed to test the ability of Tricholoma matsutake isolates to form mycorrhizas with aseptic seedlings of Pinus sylvestris L. and Picea abies (L.) Karst. Germinated seedlings of Scots pine and Norway spruce were separately inoculated with either isolates originating from Finland or Japan. Eight months after inoculation, the Finnish isolate had formed a sheath and Hartig net on both host species. Ectomycorrhizal Scots pine seedlings inoculated with the Finnish isolate showed the same shoot height and dry mass as the controls. Ectomycorrhizal Norway spruce seedlings inoculated with the Finnish isolate had similar shoot height but slightly less dry mass than the control seedlings. For both tree species, inoculation with the Finnish isolate resulted in reduced total nitrogen content per seedling, but carbon content was unaffected. Inoculation with the Japanese isolate resulted in an initial Hartig net-like structure in pine but not in spruce. No typical Hartig net was observed on either tree species. Furthermore, seedlings of both species inoculated with the Japanese isolate showed significantly reduced growth, dry mass, nitrogen, and carbon content per seedling and shoot height (in spruce) compared to the controls. This study documents and describes the in vitro ectomycorrhization between T. matsutake and Scots pine or Norway spruce and the variable mycorrhizal structures that matsutake isolates can form.
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Affiliation(s)
- Lu-Min Vaario
- Finnish Forest Research Institute, Vantaa Research Unit, PL 18, 01301 Vantaa, Finland.
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56
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Wilkinson A, Solan M, Taylor AFS, Alexander IJ, Johnson D. Intraspecific diversity regulates fungal productivity and respiration. PLoS One 2010; 5:e12604. [PMID: 20830299 PMCID: PMC2935373 DOI: 10.1371/journal.pone.0012604] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2010] [Accepted: 08/12/2010] [Indexed: 11/18/2022] Open
Abstract
Individuals and not just species are key components of biodiversity, yet the relationship between intraspecific diversity and ecosystem functioning in microbial systems remains largely untested. This limits our ability to understand and predict the effects of altered genetic diversity in regulating key ecosystem processes and functions. Here, we use a model fungal system to test the hypothesis that intraspecific genotypic richness of Paxillus obscurosporus stimulates biomass and CO(2) efflux, but that this is dependent on nitrogen supply. Using controlled experimental microcosms, we show that populations containing several genotypes (maximum 8) of the fungus had greater productivity and produced significantly more CO(2) than those with fewer genotypes. Moreover, intraspecific diversity had a much stronger effect than a four-fold manipulation of the carbon:nitrogen ratio of the growth medium. The effects of intraspecific diversity were underpinned by strong roles of individuals, but overall intraspecific diversity increased the propensity of populations to over-yield, indicating that both complementarity and selection effects can operate within species. Our data demonstrate the importance of intraspecific diversity over a range of nitrogen concentrations, and the need to consider fine scale phylogenetic information of microbial communities in understanding their contribution to ecosystem processes.
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Affiliation(s)
- Anna Wilkinson
- Institute of Biological and Environmental Sciences, University of Aberdeen, Aberdeen, United Kingdom
| | - Martin Solan
- Oceanlab, University of Aberdeen, Newburgh, United Kingdom
| | | | - Ian J. Alexander
- Institute of Biological and Environmental Sciences, University of Aberdeen, Aberdeen, United Kingdom
| | - David Johnson
- Institute of Biological and Environmental Sciences, University of Aberdeen, Aberdeen, United Kingdom
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57
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Abstract
Coevolution can be a potent force in maintaining and generating biological diversity. Although coevolution is likely to have played a key role in the early development of mycorrhizal interactions, it is unclear how important coevolutionary processes are for ongoing trait evolution in those interactions. Empirical studies have shown that candidate coevolving traits, such as mycorrhizal colonization intensity, exhibit substantial heritable genetic variation within plant and fungal species and are influenced by plant genotype x fungal genotype interactions, suggesting the potential for ongoing coevolutionary selection. Selective source analysis (SSA) could be employed to build on these results, testing explicitly for ongoing coevolutionary selection and analyzing the influence of community context on local coevolutionary selection. Recent empirical studies suggest the potential for coevolution to drive adaptive differentiation among populations of plants and fungi, but further studies, especially using SSA in the context of field reciprocal transplant experiments, are needed to determine the importance of coevolutionary selection compared with nonreciprocal selection on species traits.
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Affiliation(s)
- Jason D Hoeksema
- Department of Biology, University of Mississippi, PO Box 1848, University, MS 38677, USA
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58
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Dickie IA, Bolstridge N, Cooper JA, Peltzer DA. Co-invasion by Pinus and its mycorrhizal fungi. THE NEW PHYTOLOGIST 2010; 187:475-484. [PMID: 20456067 DOI: 10.1111/j.1469-8137.2010.03277.x] [Citation(s) in RCA: 141] [Impact Index Per Article: 10.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/13/2023]
Abstract
*The absence of co-evolved mutualists of plants invading a novel habitat is the logical corollary of the more widely recognized 'enemy escape'. To avoid or overcome the loss of mutualists, plants may co-invade with nonnative mutualists, form novel associations with native mutualists or form associations with native cosmopolitan mutualists, which are native but not novel to the invading plant. *We tested these hypotheses by contrasting the ectomycorrhizal fungal communities associated with invasive Pinus contorta in New Zealand with co-occurring endemic Nothofagus solandri var. cliffortioides. *Fungal communities on Pinus were species poor (14 ectomycorrhizal species) and dominated by nonnative (93%) and cosmopolitan fungi (7%). Nothofagus had a species-rich (98 species) fungal community dominated by native Cortinarius and two cosmopolitan fungi. *These results support co-invasion by mutualists rather than novel associations as an important mechanism by which plants avoid or overcome the loss of mutualists, consistent with invasional meltdown.
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Affiliation(s)
- Ian A Dickie
- Landcare Research, Box 40, Lincoln 7640, New Zealand
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59
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Tedersoo L, May TW, Smith ME. Ectomycorrhizal lifestyle in fungi: global diversity, distribution, and evolution of phylogenetic lineages. MYCORRHIZA 2010; 20:217-63. [PMID: 20191371 DOI: 10.1007/s00572-009-0274-x] [Citation(s) in RCA: 517] [Impact Index Per Article: 36.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/26/2009] [Accepted: 08/13/2009] [Indexed: 05/11/2023]
Abstract
The ectomycorrhizal (EcM) symbiosis involves a large number of plant and fungal taxa worldwide. During studies on EcM diversity, numerous misidentifications, and contradictory reports on EcM status have been published. This review aims to: (1) critically assess the current knowledge of the fungi involved in the EcM by integrating data from axenic synthesis trials, anatomical, molecular, and isotope studies; (2) group these taxa into monophyletic lineages based on molecular sequence data and published phylogenies; (3) investigate the trophic status of sister taxa to EcM lineages; (4) highlight other potentially EcM taxa that lack both information on EcM status and DNA sequence data; (5) recover the main distribution patterns of the EcM fungal lineages in the world. Based on critically examining original reports, EcM lifestyle is proven in 162 fungal genera that are supplemented by two genera based on isotopic evidence and 52 genera based on phylogenetic data. Additionally, 33 genera are highlighted as potentially EcM based on habitat, although their EcM records and DNA sequence data are lacking. Molecular phylogenetic and identification studies suggest that EcM symbiosis has arisen independently and persisted at least 66 times in fungi, in the Basidiomycota, Ascomycota, and Zygomycota. The orders Pezizales, Agaricales, Helotiales, Boletales, and Cantharellales include the largest number of EcM fungal lineages. Regular updates of the EcM lineages and genera therein can be found at the UNITE homepage http://unite.ut.ee/EcM_lineages . The vast majority of EcM fungi evolved from humus and wood saprotrophic ancestors without any obvious reversals. Herbarium records from 11 major biogeographic regions revealed three main patterns in distribution of EcM lineages: (1) Austral; (2) Panglobal; (3) Holarctic (with or without some reports from the Austral or tropical realms). The holarctic regions host the largest number of EcM lineages; none are restricted to a tropical distribution with Dipterocarpaceae and Caesalpiniaceae hosts. We caution that EcM-dominated habitats and hosts in South America, Southeast Asia, Africa, and Australia remain undersampled relative to the north temperate regions. In conclusion, EcM fungi are phylogenetically highly diverse, and molecular surveys particularly in tropical and south temperate habitats are likely to supplement to the present figures. Due to great risk of contamination, future reports on EcM status of previously unstudied taxa should integrate molecular identification tools with axenic synthesis experiments, detailed morphological descriptions, and/or stable isotope investigations. We believe that the introduced lineage concept facilitates design of biogeographical studies and improves our understanding about phylogenetic structure of EcM fungal communities.
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Affiliation(s)
- Leho Tedersoo
- Institute of Ecology and Earth Sciences and Natural History Museum of Tartu University, 40 Lai Street, 51005, Tartu, Estonia.
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60
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Stefani FOP, Moncalvo JM, Séguin A, Bérubé JA, Hamelin RC. Impact of an 8-year-old transgenic poplar plantation on the ectomycorrhizal fungal community. Appl Environ Microbiol 2009; 75:7527-36. [PMID: 19801471 PMCID: PMC2786396 DOI: 10.1128/aem.01120-09] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2009] [Accepted: 09/26/2009] [Indexed: 11/20/2022] Open
Abstract
The long-term impact of field-deployed genetically modified trees on soil mutualistic organisms is not well known. This study aimed at evaluating the impact of poplars transformed with a binary vector containing the selectable nptII marker and beta-glucuronidase reporter genes on ectomycorrhizal (EM) fungi 8 years after field deployment. We generated 2,229 fungal internal transcribed spacer (ITS) PCR products from 1,150 EM root tips and 1,079 fungal soil clones obtained from the organic and mineral soil horizons within the rhizosphere of three control and three transformed poplars. Fifty EM fungal operational taxonomic units were identified from the 1,706 EM fungal ITS amplicons retrieved. Rarefaction curves from both the root tips and soil clones were close to saturation, indicating that most of the EM species present were recovered. Based on qualitative and/or quantitative alpha- and beta-diversity measurements, statistical analyses did not reveal significant differences between EM fungal communities associated with transformed poplars and the untransformed controls. However, EM communities recovered from the root tips and soil cloning analyses differed significantly from each other. We found no evidence of difference in the EM fungal community structure linked to the long-term presence of the transgenic poplars studied, and we showed that coupling root tip analysis with a soil DNA cloning strategy is a complementary approach to better document EM fungal diversity.
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Affiliation(s)
- Franck O P Stefani
- Universite Laval, Faculte de Foresterie et de Geomatique, Quebec, QC G1K 7P4, Canada.
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61
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Pan JJ, May G. Fungal-fungal associations affect the assembly of endophyte communities in maize (Zea mays). MICROBIAL ECOLOGY 2009; 58:668-678. [PMID: 19517158 DOI: 10.1007/s00248-009-9543-7] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/10/2009] [Accepted: 05/17/2009] [Indexed: 05/27/2023]
Abstract
Many factors can affect the assembly of communities, ranging from species pools to habitat effects to interspecific interactions. In microbial communities, the predominant focus has been on the well-touted ability of microbes to disperse and the environment acting as a selective filter to determine which species are present. In this study, we investigated the role of biotic interactions (e.g., competition, facilitation) in fungal endophyte community assembly by examining endophyte species co-occurrences within communities using null models. We used recombinant inbred lines (genotypes) of maize (Zea mays) to examine community assembly at multiple habitat levels, at the individual plant and host genotype levels. Both culture-dependent and culture-independent approaches were used to assess endophyte communities. Communities were analyzed using the complete fungal operational taxonomic unit (OTU) dataset or only the dominant (most abundant) OTUs in order to ascertain whether species co-occurrences were different for dominant members compared to when all members were included. In the culture-dependent approach, we found that for both datasets, OTUs co-occurred on maize genotypes more frequently than expected under the null model of random species co-occurrences. In the culture-independent approach, we found that OTUs negatively co-occurred at the individual plant level but were not significantly different from random at the genotype level for either the dominant or complete datasets. Our results showed that interspecific interactions can affect endophyte community assembly, but the effects can be complex and depend on host habitat level. To our knowledge, this is the first study to examine endophyte community assembly in the same host species at multiple habitat levels. Understanding the processes and mechanisms that shape microbial communities will provide important insights into microbial community structure and the maintenance of microbial biodiversity.
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Affiliation(s)
- Jean J Pan
- Department of Biology, The University of Akron, 302 Buchtel Common, Akron, OH 44325-3908, USA.
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62
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Pasonen HL, Lu J, Niskanen AM, Seppänen SK, Rytkönen A, Raunio J, Pappinen A, Kasanen R, Timonen S. Effects of sugar beet chitinase IV on root-associated fungal community of transgenic silver birch in a field trial. PLANTA 2009; 230:973-983. [PMID: 19697057 DOI: 10.1007/s00425-009-1005-4] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/05/2009] [Accepted: 08/05/2009] [Indexed: 05/28/2023]
Abstract
Heterogenous chitinases have been introduced in many plant species with the aim to increase the resistance of plants to fungal diseases. We studied the effects of the heterologous expression of sugar beet chitinase IV on the intensity of ectomycorrhizal (ECM) colonization and the structure of fungal communities in the field trial of 15 transgenic and 8 wild-type silver birch (Betula pendula Roth) genotypes. Fungal sequences were separated in denaturing gradient gel electrophoresis and identified by sequencing the ITS1 region to reveal the operational taxonomic units. ECM colonization was less intense in 7 out of 15 transgenic lines than in the corresponding non-transgenic control plants, but the slight decrease in overall ECM colonization in transgenic lines could not be related to sugar beet chitinase IV expression or total endochitinase activity. One transgenic line showing fairly weak sugar beet chitinase IV expression without significantly increased total endochitinase activity differed significantly from the non-transgenic controls in the structure of fungal community. Five sequences belonging to three different fungal genera (Hebeloma, Inocybe, Laccaria) were indicative of wild-type genotypes, and one sequence (Lactarius) indicated one transgenic line. In cluster analysis, the non-transgenic control grouped together with the transgenic lines indicating that genotype was a more important factor determining the structure of fungal communities than the transgenic status of the plants. With the tested birch lines, no clear evidence for the effect of the heterologous expression of sugar beet chitinase IV on ECM colonization or the structure of fungal community was found.
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Affiliation(s)
- Hanna-Leena Pasonen
- Department of Applied Biology, University of Helsinki, 00014 Helsinki, Finland.
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63
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Cavender-Bares J, Izzo A, Robinson R, Lovelock CE. Changes in ectomycorrhizal community structure on two containerized oak hosts across an experimental hydrologic gradient. MYCORRHIZA 2009; 19:133-142. [PMID: 19142671 DOI: 10.1007/s00572-008-0220-3] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/11/2008] [Accepted: 12/09/2008] [Indexed: 05/27/2023]
Abstract
Shifts in ectomycorrhizal (ECM) community structure were examined across an experimental hydrologic gradient on containerized seedlings of two oak species, Quercus montana and Quercus palustris, inoculated from a homogenate of roots from mature oak trees. At the end of one growing season, seedlings were harvested, roots were sorted by morphotype, and proportional colonization of each type was determined. DNA was subsequently extracted from individual root tips for polymerase chain reaction, restriction fragment length polymorphism, and rDNA sequencing of the ITS1/5.8S/ITS2 region to determine identities of fungal morphotypes. Twelve distinct molecular types were identified. Analysis of similarity showed that ECM fungal assemblages shifted significantly in composition across the soil moisture gradient. Taxa within the genus Tuber and the family Thelephoraceae were largely responsible for the changes in fungal assemblages. There were also significant differences in ECM community assemblages between the two oak host species. These results demonstrate that the structure of ECM fungal communities depends on both the abiotic and biotic environments and can shift with changes in soil moisture as well as host plant, even within the same genus.
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Affiliation(s)
- J Cavender-Bares
- Department of Ecology, Evolution, and Behavior, University of Minnesota, 1987 Upper Buford Circle, Saint Paul, MN, 55108, USA.
- Smithsonian Environmental Research Center, 647 Contee's Wharf Road, Edgewater, MD, 21037, USA.
| | - A Izzo
- Plant and Microbial Biology Department, University of California at Berkeley, Berkeley, CA, 94720, USA
- Department of Biology, Elon University, 2625 Campus Box, Elon, NC, 27244, USA
| | - R Robinson
- Smithsonian Environmental Research Center, 647 Contee's Wharf Road, Edgewater, MD, 21037, USA
| | - C E Lovelock
- Smithsonian Environmental Research Center, 647 Contee's Wharf Road, Edgewater, MD, 21037, USA
- School of Integrative Biology and Centre for Marine Studies, The University of Queensland, Brisbane, QLD, 4072, Australia
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64
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Urban A, Puschenreiter M, Strauss J, Gorfer M. Diversity and structure of ectomycorrhizal and co-associated fungal communities in a serpentine soil. MYCORRHIZA 2008; 18:339-354. [PMID: 18677625 DOI: 10.1007/s00572-008-0189-y] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/12/2008] [Accepted: 07/09/2008] [Indexed: 05/26/2023]
Abstract
The community of ectomycorrhizal (ECM) and co-associated fungi from a serpentine site forested with Pinus sylvestris and Quercus petraea was explored, to improve the understanding of ECM diversity in naturally metalliferous soils. ECM fungi were identified by a combination of morphotyping and direct sequencing of the nuclear ribosomal internal transcribed spacer region 2 and of a part of the large-subunit region. Co-associated fungi from selected ECM were identified by restriction fragment length polymorphism and sequencing of representative clones from libraries. Polymerase chain reaction with species-specific primers was applied to assess patterns of association of ECM and co-associated fungi. Twenty ECM species were differentiated. Aphyllophoralean fungi representing several basidiomycete orders and Russulaceae were dominant. Phialocephala fortinii was the most frequently encountered taxon from the diverse assemblage of ECM co-associated fungi. A ribotype representing a deeply branching ascomycete lineage known from ribosomal deoxyribonucleic acid sequences only was detected in some ECM samples. A broad taxonomic range of fungi have the potential to successfully colonise tree roots under the extreme edaphic conditions of serpentine soils. Distribution patterns of ECM-co-associated fungi hint at the importance of specific inter-fungal interactions, which are hypothesised to be a relevant factor for the maintenance of ECM diversity.
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Affiliation(s)
- Alexander Urban
- Fungal Genomics Unit, Austrian Research Centers, Tech Gate Vienna, Donau-City-Strasse 1, 1220 Vienna, Austria.
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65
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Korkama-Rajala T, Müller MM, Pennanen T. Decomposition and fungi of needle litter from slow- and fast-growing Norway spruce (Picea abies) clones. MICROBIAL ECOLOGY 2008; 56:76-89. [PMID: 17943340 DOI: 10.1007/s00248-007-9326-y] [Citation(s) in RCA: 51] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/29/2007] [Accepted: 09/24/2007] [Indexed: 05/25/2023]
Abstract
The fungal species involved in the decomposition of needle litter and their response to intraspecific genetic variation of trees are poorly known. First, we compared the needle decomposition and fungal decomposers underneath eight different Norway spruce clones in situ. This experiment revealed 60-70% loss of needle mass in two years. Although spruce clones differed considerably in growth (twofold height difference) and their needles differed in chemical composition, no significant difference was found for loss of needle mass under the spruce clones. Furthermore, the spruce clones did not affect the community structure of the fungal decomposers. Fungi inhabiting needle litter were identified by extracting ribosomal RNA (rRNA) and sequencing complementary DNA (cDNA) of internal trascribed spacer 1 (ITS1) region. The most frequent identifications were Lophodermium, Pezizales, Mycena, and Marasmius, suggesting that endophytic fungi were involved in the decomposition process. Second, we evaluated the potential of endophytes to decompose needle material in a microcosm experiment in which all other fungi than endophytes were excluded. Within 2 years, the endophytes had decomposed 35-45% of the needle mass. Sequences of Mollisia, Lophodermium, Lachnum, and Phialocephala were most frequently found in rRNA and rDNA extracted from the needles at the end of the microcosm experiment. The dominant needle endophyte in fresh, green needles was Lophodermium piceae, and this species was also found frequently in the needle material after 2 years of decay both in the field and laboratory experiments. Moreover, the relative abundance of Lophodermium-derived denaturing gradient gel electrophoresis (DGGE) bands correlated positively with the decomposition in the microcosm experiment. Hence, our results suggest a significant role of endophytic fungi, and particularly L. piceae, in the process of needle decomposition in boreal forests.
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Affiliation(s)
- Tiina Korkama-Rajala
- Vantaa Research Unit, Finnish Forest Research Institute Metla, PO Box, 18, Vantaa, Finland.
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Jaatinen K, Laiho R, Vuorenmaa A, del Castillo U, Minkkinen K, Pennanen T, Penttilä T, Fritze H. Responses of aerobic microbial communities and soil respiration to water-level drawdown in a northern boreal fen. Environ Microbiol 2008; 10:339-53. [PMID: 17903215 DOI: 10.1111/j.1462-2920.2007.01455.x] [Citation(s) in RCA: 91] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
On a global basis, peatlands are a major reserve of carbon (C). Hydrological changes can affect the decomposition processes in peatlands and in turn can alter their C balance. Since 1959, a groundwater extraction plant has generated a water-level gradient at our study site that has gradually changed part of the wet fen into a dry peatland forest. The average water-level drawdown of the gradient (from a pristine 9 cm to 26 cm in the dry end) is close to an estimate predicted by an increase in mean global temperature of 3 degrees C. We studied the total microbial community of the aerobic surface peat in four locations along the gradient through phospholipid fatty acid and PCR-DGGE methods. Additionally, field measurements of soil respiration showed a threefold increase in the C-emission rate at the driest location compared with the wettest one, indicating enhanced decomposition. Also, both fungal and bacterial biomass increased in the drier locations. At the species level, the fungal community changed due to water-level drawdown whereas actinobacteria were less sensitive to drying. The majority of fungal sequences were similar to ectomycorrhizal (ECM) fungi, which dominated throughout the gradient. Our results indicate that ECM fungi might act as important facultative decomposers in organic-rich environments such as peatlands.
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Affiliation(s)
- Krista Jaatinen
- Finnish Forest Research Institute, Vantaa Research Unit, PO Box 18, 01301 Vantaa, Finland.
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Pan JJ, Baumgarten AM, May G. Effects of host plant environment and Ustilago maydis infection on the fungal endophyte community of maize (Zea mays). THE NEW PHYTOLOGIST 2008; 178:147-156. [PMID: 18194146 DOI: 10.1111/j.1469-8137.2007.02350.x] [Citation(s) in RCA: 55] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/25/2023]
Abstract
The focus of many fungal endophyte studies has been how plants benefit from endophyte infection. Few studies have investigated the role of the host plant as an environment in shaping endophyte community diversity and composition. The effects that different attributes of the host plant, that is, host genetic variation, host variation in resistance to the fungal pathogen Ustilago maydis and U. maydis infection, have on the fungal endophyte communities in maize (Zea mays) was examined. The internal transcribed spacer (ITS) region of the rDNA was sequenced to identify fungi and the endophyte communities were compared in six maize lines that varied in their resistance to U. maydis. It was found that host genetic variation, as determined by maize line, had significant effects on species richness, while the interactions between line and U. maydis infection and line and field plot had significant effects on endophyte community composition. However, the effects of maize line were not dependent on whether lines were resistant or susceptible to U. maydis. Almost 3000 clones obtained from 58 plants were sequenced to characterize the maize endophyte community. These results suggest that the endophyte community is shaped by complex interactions and factors, such as inoculum pool and microclimate, may be important.
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Affiliation(s)
- Jean J Pan
- Department of Biology, The University of Akron, Akron, OH 44325, USA
- Department of Ecology, Evolution and Behavior, University of Minnesota, St. Paul, MN 55108, USA
| | - Andrew M Baumgarten
- Pioneer Hi-Bred International, Maize Product Development - MB Breeding Systems, Johnston, IA 50131, USA
| | - Georgiana May
- Department of Ecology, Evolution and Behavior, University of Minnesota, St. Paul, MN 55108, USA
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He XH, Horwath WR, Zasoski RJ, Aanderud Z, Bledsoe CS. Nitrogen sink strength of ectomycorrhizal morphotypes of Quercus douglasii, Q. garryana, and Q. agrifolia seedlings grown in a northern California oak woodland. MYCORRHIZA 2007; 18:33-41. [PMID: 17899217 DOI: 10.1007/s00572-007-0150-5] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/08/2007] [Accepted: 08/17/2007] [Indexed: 05/17/2023]
Abstract
Little information is known on what the magnitude of nitrogen (N) processed by ectomycorrhizal (ECM) fungal species in the field. In a common garden experiment performed in a northern California oak woodland, we investigated transfer of nitrogen applied as 15NH4 or 15NO3 from leaves to ectomycorrhizal roots of three oak species, Quercus agrifolia, Q. douglasii, and Q. garryana. Oak seedlings formed five common ectomycorrhizal morphotypes on root tips. Mycorrhizal tips were more enriched in 15N than fine roots. N transfer was greater to the less common morphotypes than to the more common types. 15N transfer from leaves to roots was greater when 15NO3(-), not [Formula: see text], was supplied. 15N transfer to roots was greater in seedlings of Q. agrifolia than in Q. douglasii and Q. garryana. Differential N transfer to ectomycorrhizal root tips suggests that ectomycorrhizal morphotypes can influence flows of N from leaves to roots and that mycorrhizal diversity may influence the total N requirement of plants.
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Affiliation(s)
- X H He
- Department of Land, Air and Water Resources, University of California, One Shields Avenue, Davis, CA, 95616, USA
- Asian National Environmental Science Center, University of Tokyo, 1-1-8 Midori-cho, Nishitokyo, Tokyo, 188-0002, Japan
| | - W R Horwath
- Department of Land, Air and Water Resources, University of California, One Shields Avenue, Davis, CA, 95616, USA
| | - R J Zasoski
- Department of Land, Air and Water Resources, University of California, One Shields Avenue, Davis, CA, 95616, USA
| | - Z Aanderud
- Department of Land, Air and Water Resources, University of California, One Shields Avenue, Davis, CA, 95616, USA
| | - C S Bledsoe
- Department of Land, Air and Water Resources, University of California, One Shields Avenue, Davis, CA, 95616, USA.
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Korkama T, Fritze H, Pakkanen A, Pennanen T. Interactions between extraradical ectomycorrhizal mycelia, microbes associated with the mycelia and growth rate of Norway spruce (Picea abies) clones. THE NEW PHYTOLOGIST 2007; 173:798-807. [PMID: 17286828 DOI: 10.1111/j.1469-8137.2006.01957.x] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/13/2023]
Abstract
Despite their ecological relevance, field studies of the extraradical mycelia of ectomycorrhizal (ECM) fungi are rare. Here we examined in situ interactions between ECM mycelia and host vigour. Ectomycorrhizal mycelia were harvested with in-growth mesh bags buried under Norway spruce (Picea abies) clones planted in 1994 in a randomized block design. Mycelial biomass was determined and fungal species were identified by denaturing gradient gel electrophoresis (DGGE) and sequencing of the internal transcribed spacer 1 (ITS1) region. Microbial community structure in the mycelium was investigated by phospholipid fatty acid (PLFA) profiling. Compared to slow-growing spruce clones, fast-growing clones tended to support denser mycelia where the relative proportions of Atheliaceae fungi and PLFAs indicative of Gram-positive bacteria were higher. Ascomycetes and PLFAs representative of Gram-negative bacteria were more common with slow-growing clones. In general, the ECM mycelial community was similar to the ECM root-tip community. Growth rate of the hosts, the ECM mycelial community and the microbes associated with the mycelium were related, suggesting multitrophic interactions between trees, fungi and bacteria.
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Affiliation(s)
- T Korkama
- Finnish Forest Research Institute (Metla) Vantaa Research Unit, PO Box 18, FI-01301, Vantaa, Finland
| | - H Fritze
- Finnish Forest Research Institute (Metla) Vantaa Research Unit, PO Box 18, FI-01301, Vantaa, Finland
| | - A Pakkanen
- Finnish Forest Research Institute (Metla) Vantaa Research Unit, PO Box 18, FI-01301, Vantaa, Finland
| | - T Pennanen
- Finnish Forest Research Institute (Metla) Vantaa Research Unit, PO Box 18, FI-01301, Vantaa, Finland
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Affiliation(s)
- Ian A Dickie
- Landcare Research, PO Box 40, Lincoln 7640, New Zealand (tel +64 3 321 9646; fax +64 3321 9998; email )
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Parrent JL, Vilgalys R. Biomass and compositional responses of ectomycorrhizal fungal hyphae to elevated CO2 and nitrogen fertilization. THE NEW PHYTOLOGIST 2007; 176:164-174. [PMID: 17803647 DOI: 10.1111/j.1469-8137.2007.02155.x] [Citation(s) in RCA: 57] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/17/2023]
Abstract
The extramatrical mycelia (EMM) of ectomycorrhizal fungi make up a large proportion of the microbial diversity and biomass in temperate forest soils. Thus, their response to elevated CO(2) can have large effects on plant nutrient acquisition and carbon movement through forests. Here, the effects of CO(2) and nitrogen (N) fertilization on EMM biomass and community structure in Pinus taeda forest plots were examined using sand-filled mesh bags buried in the field, the contents of which were analyzed by phospholipid fatty acid (PLFA) and DNA sequencing. A total of 2138 sequences comprising 295 taxa were recovered; most (83.5%) were from ectomycorrhizal fungal taxa. No biomass increase was detected in elevated CO(2) plots relative to control plots, but individual taxa responded to both CO(2) and N fertilization, four of the six most abundant taxa were less frequent in N-fertilized plots. Thelephoroid and athelioid taxa were both frequent and abundant as EMM, and thelephoroid richness was extremely high. Russula and Cortinariaceae taxa were less abundant and boletoid taxa were more abundant as EMM relative to ectomycorrhizas. The EMM community, sampled across seasons and years, was dynamic with a high degree of interspecific variation in response to CO(2) enrichment and N fertilization.
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Affiliation(s)
- Jeri Lynn Parrent
- Biology Department, Duke University, Box 90338, Durham, NC 27708-0338, USA
- (Present address) Department of Forest Mycology and Pathology, Swedish University of Agricultural Sciences, PO Box 7026, Ulls väg 26a, SE 750 07 Uppsala, Sweden
| | - Rytas Vilgalys
- Biology Department, Duke University, Box 90338, Durham, NC 27708-0338, USA
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Ishida TA, Nara K, Hogetsu T. Host effects on ectomycorrhizal fungal communities: insight from eight host species in mixed conifer-broadleaf forests. THE NEW PHYTOLOGIST 2007; 174:430-440. [PMID: 17388905 DOI: 10.1111/j.1469-8137.2007.02016.x] [Citation(s) in RCA: 263] [Impact Index Per Article: 15.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/14/2023]
Abstract
To advance our understanding of host effects on the community structure of ectomycorrhizal fungi (EMF), EMF communities were compared among different host species, genera and families in two mixed conifer-broadleaf forests in Japan. Using molecular identification methods we examined EMF root tips of eight coexisting species belonging to six genera (three families): Abies and Tsuga (Pinaceae), Betula and Carpinus (Betulaceae) and Fagus and Quercus (Fagaceae). In total, 205 EMF species were detected, and the total richness was estimated to exceed 300 species using major estimators. Of the 55 EMF species occurring three or more times, eight showed significantly biased host preference. A Mantel test showed a significantly negative correlation between EMF community similarity and host taxonomic distance. Detrended correspondence analysis separated EMF communities mainly by host taxonomic and successional status. Thus, EMF communities are similar on hosts with similar taxonomic and successional status. A significant proportion of EMF exhibited host specificity, which may contribute to the extremely diverse EMF community in conifer-broadleaf forests.
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Affiliation(s)
- Takahide A Ishida
- Graduate School of Agriculture and Life Sciences, The University of Tokyo, Yayoi 1-1-1, Bunkyo-ku, Tokyo, 113-8657, Japan
| | - Kazuhide Nara
- Asian Natural Environmental Science Center, The University of Tokyo, Nishitokyo, Tokyo, 188-0002, Japan
| | - Taizo Hogetsu
- Graduate School of Agriculture and Life Sciences, The University of Tokyo, Yayoi 1-1-1, Bunkyo-ku, Tokyo, 113-8657, Japan
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Affiliation(s)
- Martina Peter
- Swiss Federal Research Institute WSL, Zuercherstrasse 111, CH-8903 Birmensdorf, Switzerland.
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