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For: Farrelly V, Rainey FA, Stackebrandt E. Effect of genome size and rrn gene copy number on PCR amplification of 16S rRNA genes from a mixture of bacterial species. Appl Environ Microbiol 1995;61:2798-801. [PMID: 7618894 PMCID: PMC167554 DOI: 10.1128/aem.61.7.2798-2801.1995] [Citation(s) in RCA: 521] [Impact Index Per Article: 18.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]  Open
Number Cited by Other Article(s)
51
Development of a prokaryotic universal primer for simultaneous analysis of Bacteria and Archaea using next-generation sequencing. PLoS One 2014;9:e105592. [PMID: 25144201 PMCID: PMC4140814 DOI: 10.1371/journal.pone.0105592] [Citation(s) in RCA: 788] [Impact Index Per Article: 78.8] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2014] [Accepted: 07/26/2014] [Indexed: 01/03/2023]  Open
52
Inoue D, Pang J, Matsuda M, Sei K, Nishida K, Ike M. Development of a whole community genome amplification-assisted DNA microarray method to detect functional genes involved in the nitrogen cycle. World J Microbiol Biotechnol 2014;30:2907-15. [DOI: 10.1007/s11274-014-1718-9] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2014] [Accepted: 07/31/2014] [Indexed: 11/28/2022]
53
On the Usefulness of Circulating Bacterial 16S rDNA as a Marker of Microbial Translocation in HIV-1–Infected Patients. J Acquir Immune Defic Syndr 2014;66:e87-9. [DOI: 10.1097/qai.0000000000000188] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
54
Halophilic microorganisms are responsible for the rosy discolouration of saline environments in three historical buildings with mural paintings. PLoS One 2014;9:e103844. [PMID: 25084531 PMCID: PMC4118916 DOI: 10.1371/journal.pone.0103844] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2014] [Accepted: 07/02/2014] [Indexed: 01/31/2023]  Open
55
Berry D, Widder S. Deciphering microbial interactions and detecting keystone species with co-occurrence networks. Front Microbiol 2014;5:219. [PMID: 24904535 PMCID: PMC4033041 DOI: 10.3389/fmicb.2014.00219] [Citation(s) in RCA: 780] [Impact Index Per Article: 78.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2014] [Accepted: 04/26/2014] [Indexed: 01/17/2023]  Open
56
Targeted and highly multiplexed detection of microorganisms by employing an ensemble of molecular probes. Appl Environ Microbiol 2014;80:4153-61. [PMID: 24795371 DOI: 10.1128/aem.00666-14] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
57
Effects of temperature on microbial succession and metabolite change during saeu-jeot fermentation. Food Microbiol 2014;38:16-25. [DOI: 10.1016/j.fm.2013.08.004] [Citation(s) in RCA: 58] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2013] [Revised: 06/03/2013] [Accepted: 08/10/2013] [Indexed: 11/18/2022]
58
Teles R, Teles F, Frias-Lopez J, Paster B, Haffajee A. Lessons learned and unlearned in periodontal microbiology. Periodontol 2000 2014;62:95-162. [PMID: 23574465 PMCID: PMC3912758 DOI: 10.1111/prd.12010] [Citation(s) in RCA: 227] [Impact Index Per Article: 22.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
59
Mavengere NR, Ellis AG, Le Roux JJ. Burkholderia aspalathi sp. nov., isolated from root nodules of the South African legume Aspalathus abietina Thunb. Int J Syst Evol Microbiol 2014;64:1906-1912. [PMID: 24599894 DOI: 10.1099/ijs.0.057067-0] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
60
Mehta CM, Palni U, Franke-Whittle IH, Sharma AK. Compost: its role, mechanism and impact on reducing soil-borne plant diseases. WASTE MANAGEMENT (NEW YORK, N.Y.) 2014;34:607-22. [PMID: 24373678 DOI: 10.1016/j.wasman.2013.11.012] [Citation(s) in RCA: 42] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/29/2013] [Revised: 11/28/2013] [Accepted: 11/28/2013] [Indexed: 05/14/2023]
61
Laverock B, Tait K, Gilbert JA, Osborn AM, Widdicombe S. Impacts of bioturbation on temporal variation in bacterial and archaeal nitrogen-cycling gene abundance in coastal sediments. ENVIRONMENTAL MICROBIOLOGY REPORTS 2014;6:113-21. [PMID: 24596269 PMCID: PMC4208606 DOI: 10.1111/1758-2229.12115] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/01/2013] [Accepted: 10/11/2013] [Indexed: 05/13/2023]
62
Brugère JF, Mihajlovski A, Missaoui M, Peyret P. Tools for stools: the challenge of assessing human intestinal microbiota using molecular diagnostics. Expert Rev Mol Diagn 2014;9:353-65. [DOI: 10.1586/erm.09.16] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
63
Zhang ZQ, He C, Li ML. Analysis of intestinal bacterial community diversity of adult Dastarcus helophoroides. JOURNAL OF INSECT SCIENCE (ONLINE) 2014;14:114. [PMID: 25200108 PMCID: PMC4212848 DOI: 10.1093/jis/14.1.114] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/08/2012] [Accepted: 02/20/2013] [Indexed: 05/31/2023]
64
Angly FE, Dennis PG, Skarshewski A, Vanwonterghem I, Hugenholtz P, Tyson GW. CopyRighter: a rapid tool for improving the accuracy of microbial community profiles through lineage-specific gene copy number correction. MICROBIOME 2014;2:11. [PMID: 24708850 PMCID: PMC4021573 DOI: 10.1186/2049-2618-2-11] [Citation(s) in RCA: 157] [Impact Index Per Article: 15.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/22/2013] [Accepted: 02/17/2014] [Indexed: 05/13/2023]
65
Sharma B, Narzary D, Jha DK. Culture Independent Diversity Analysis of Soil Microbial Community and their Significance. SUSTAINABLE DEVELOPMENT AND BIODIVERSITY 2014. [DOI: 10.1007/978-3-319-05936-5_12] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
66
Zhang ZQ, He C, Li ML. Analysis of intestinal bacterial community diversity of adult Dastarcus helophoroides. JOURNAL OF INSECT SCIENCE (ONLINE) 2014;14:114. [PMID: 25200108 PMCID: PMC4212848 DOI: 10.1673/031.014.114] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/08/2012] [Accepted: 02/20/2013] [Indexed: 06/03/2023]
67
Hyman RW, Fukushima M, Jiang H, Fung E, Rand L, Johnson B, Vo KC, Caughey AB, Hilton JF, Davis RW, Giudice LC. Diversity of the vaginal microbiome correlates with preterm birth. Reprod Sci 2014;21:32-40. [PMID: 23715799 PMCID: PMC3857766 DOI: 10.1177/1933719113488838] [Citation(s) in RCA: 214] [Impact Index Per Article: 21.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
68
Niu SQ, Fukushima J, Jiang Y, Ishikawa Y, Ueda T, Matsumoto S. Analysis of Bacterial Community Structure in the Natural Circulation System Wastewater Bioreactor by Using a 16S rRNA Gene Clone Library. Microbiol Immunol 2013;50:937-50. [PMID: 17179661 DOI: 10.1111/j.1348-0421.2006.tb03870.x] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
69
Pester M, Maixner F, Berry D, Rattei T, Koch H, Lücker S, Nowka B, Richter A, Spieck E, Lebedeva E, Loy A, Wagner M, Daims H. NxrB encoding the beta subunit of nitrite oxidoreductase as functional and phylogenetic marker for nitrite-oxidizing Nitrospira. Environ Microbiol 2013;16:3055-71. [PMID: 24118804 DOI: 10.1111/1462-2920.12300] [Citation(s) in RCA: 172] [Impact Index Per Article: 15.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2013] [Accepted: 09/26/2013] [Indexed: 12/01/2022]
70
Balashov SV, Mordechai E, Adelson ME, Gygax SE. Identification, quantification and subtyping of Gardnerella vaginalis in noncultured clinical vaginal samples by quantitative PCR. J Med Microbiol 2013;63:162-175. [PMID: 24200640 DOI: 10.1099/jmm.0.066407-0] [Citation(s) in RCA: 77] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
71
Vishnivetskaya TA, Layton AC, Lau MCY, Chauhan A, Cheng KR, Meyers AJ, Murphy JR, Rogers AW, Saarunya GS, Williams DE, Pfiffner SM, Biggerstaff JP, Stackhouse BT, Phelps TJ, Whyte L, Sayler GS, Onstott TC. Commercial DNA extraction kits impact observed microbial community composition in permafrost samples. FEMS Microbiol Ecol 2013;87:217-30. [PMID: 24102625 DOI: 10.1111/1574-6941.12219] [Citation(s) in RCA: 63] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2013] [Revised: 09/09/2013] [Accepted: 09/10/2013] [Indexed: 11/30/2022]  Open
72
Piterina AV, Pembroke JT. Use of PCR-DGGE Based Molecular Methods to Analyse Microbial Community Diversity and Stability during the Thermophilic Stages of an ATAD Wastewater Sludge Treatment Process as an Aid to Performance Monitoring. ISRN BIOTECHNOLOGY 2013;2013:162645. [PMID: 25937969 PMCID: PMC4393042 DOI: 10.5402/2013/162645] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/26/2013] [Accepted: 08/20/2013] [Indexed: 01/07/2023]
73
Nathani NM, Patel AK, Dhamannapatil PS, Kothari RK, Singh KM, Joshi CG. Comparative evaluation of rumen metagenome community using qPCR and MG-RAST. AMB Express 2013;3:55. [PMID: 24025701 PMCID: PMC3851495 DOI: 10.1186/2191-0855-3-55] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2013] [Accepted: 08/10/2013] [Indexed: 11/10/2022]  Open
74
Zhang Y, Hunt HK, Hu Z. Application of bacteriophages to selectively remove Pseudomonas aeruginosa in water and wastewater filtration systems. WATER RESEARCH 2013;47:4507-4518. [PMID: 23764600 DOI: 10.1016/j.watres.2013.05.014] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/04/2013] [Revised: 05/07/2013] [Accepted: 05/09/2013] [Indexed: 06/02/2023]
75
Watanarojanaporn N, Longtonglang A, Boonkerd N, Tittabutr P, Lee J, Teaumroong N. Biases for detecting arbuscular mycorrhizal fungal mixture by terminal restriction fragment length polymorphism (T-RFLP). World J Microbiol Biotechnol 2013;30:77-86. [DOI: 10.1007/s11274-013-1423-0] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2013] [Accepted: 06/28/2013] [Indexed: 11/28/2022]
76
Gmiterek A, Wójtowicz H, Mackiewicz P, Radwan-Oczko M, Kantorowicz M, Chomyszyn-Gajewska M, Frąszczak M, Bielecki M, Olczak M, Olczak T. The unique hmuY gene sequence as a specific marker of Porphyromonas gingivalis. PLoS One 2013;8:e67719. [PMID: 23844074 PMCID: PMC3699645 DOI: 10.1371/journal.pone.0067719] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2013] [Accepted: 05/21/2013] [Indexed: 12/23/2022]  Open
77
Extremely High Copy Numbers and Polymorphisms of the rDNA Operon Estimated from Single Cell Analysis of Oligotrich and Peritrich Ciliates. Protist 2013;164:369-79. [DOI: 10.1016/j.protis.2012.11.006] [Citation(s) in RCA: 179] [Impact Index Per Article: 16.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2012] [Revised: 10/31/2012] [Accepted: 11/30/2012] [Indexed: 11/13/2022]
78
Novel stem–loop probe DNA arrays: Detection of specific acetotrophic 16S ribosomal RNA signatures. Anal Biochem 2013;435:60-7. [DOI: 10.1016/j.ab.2012.12.006] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2012] [Revised: 11/24/2012] [Accepted: 12/03/2012] [Indexed: 11/19/2022]
79
Development of a PCR method for detecting proteolytic psychrotrophic bacteria in raw milk. Int Dairy J 2013. [DOI: 10.1016/j.idairyj.2012.09.007] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
80
Větrovský T, Baldrian P. The variability of the 16S rRNA gene in bacterial genomes and its consequences for bacterial community analyses. PLoS One 2013;8:e57923. [PMID: 23460914 PMCID: PMC3583900 DOI: 10.1371/journal.pone.0057923] [Citation(s) in RCA: 640] [Impact Index Per Article: 58.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2012] [Accepted: 01/28/2013] [Indexed: 11/19/2022]  Open
81
Can abundance of protists be inferred from sequence data: a case study of foraminifera. PLoS One 2013;8:e56739. [PMID: 23431390 PMCID: PMC3576339 DOI: 10.1371/journal.pone.0056739] [Citation(s) in RCA: 92] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2012] [Accepted: 01/14/2013] [Indexed: 12/03/2022]  Open
82
Jung JY, Lee SH, Lee HJ, Jeon CO. Microbial succession and metabolite changes during fermentation of saeu-jeot: traditional Korean salted seafood. Food Microbiol 2013;34:360-8. [PMID: 23541203 DOI: 10.1016/j.fm.2013.01.009] [Citation(s) in RCA: 84] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2012] [Revised: 01/02/2013] [Accepted: 01/16/2013] [Indexed: 01/13/2023]
83
Rectal swabs are suitable for quantifying the carriage load of KPC-producing carbapenem-resistant Enterobacteriaceae. Antimicrob Agents Chemother 2013;57:1474-9. [PMID: 23295937 DOI: 10.1128/aac.01275-12] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]  Open
84
Miller CS. Assembling full-length rRNA genes from short-read metagenomic sequence datasets using EMIRGE. Methods Enzymol 2013;531:333-52. [PMID: 24060129 DOI: 10.1016/b978-0-12-407863-5.00017-4] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
85
He C, Nan X, Zhang Z, Li M. Composition and diversity analysis of the gut bacterial community of the Oriental armyworm, Mythimna separata, determined by culture-independent and culture-dependent techniques. JOURNAL OF INSECT SCIENCE (ONLINE) 2013;13:165. [PMID: 24773514 PMCID: PMC4015408 DOI: 10.1673/031.013.16501] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/22/2012] [Accepted: 07/15/2012] [Indexed: 06/03/2023]
86
Depletion of unwanted nucleic acid templates by selective cleavage: LNAzymes, catalytically active oligonucleotides containing locked nucleic acids, open a new window for detecting rare microbial community members. Appl Environ Microbiol 2012;79:1534-44. [PMID: 23263968 DOI: 10.1128/aem.03392-12] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]  Open
87
Kembel SW, Wu M, Eisen JA, Green JL. Incorporating 16S gene copy number information improves estimates of microbial diversity and abundance. PLoS Comput Biol 2012;8:e1002743. [PMID: 23133348 PMCID: PMC3486904 DOI: 10.1371/journal.pcbi.1002743] [Citation(s) in RCA: 278] [Impact Index Per Article: 23.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2012] [Accepted: 08/31/2012] [Indexed: 02/01/2023]  Open
88
Moffett BF, Nicholson FA, Uwakwe NC, Chambers BJ, Harris JA, Hill TCJ. Zinc contamination decreases the bacterial diversity of agricultural soil. FEMS Microbiol Ecol 2012;43:13-9. [PMID: 19719692 DOI: 10.1111/j.1574-6941.2003.tb01041.x] [Citation(s) in RCA: 70] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]  Open
89
Pearce DA, Gast CJ, Lawley B, Ellis-Evans JC. Bacterioplankton community diversity in a maritime Antarctic lake, determined by culture-dependent and culture-independent techniques. FEMS Microbiol Ecol 2012;45:59-70. [PMID: 19719607 DOI: 10.1016/s0168-6496(03)00110-7] [Citation(s) in RCA: 65] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]  Open
90
Ruegger PM, Bent E, Li W, Jeske DR, Cui X, Braun J, Jiang T, Borneman J. Improving oligonucleotide fingerprinting of rRNA genes by implementation of polony microarray technology. J Microbiol Methods 2012;90:235-40. [PMID: 22640891 PMCID: PMC3404216 DOI: 10.1016/j.mimet.2012.05.013] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2012] [Revised: 05/20/2012] [Accepted: 05/20/2012] [Indexed: 10/28/2022]
91
Ince O, Basaka B, Inceb BK, Cetecioglua Z, Celikkolb S, Kolukirik M. Effect of nitrogen deficiency during SBR operation on PHA storage and microbial diversity. ENVIRONMENTAL TECHNOLOGY 2012;33:1827-1837. [PMID: 23240176 DOI: 10.1080/09593330.2011.634441] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
92
Yuan S, Cohen DB, Ravel J, Abdo Z, Forney LJ. Evaluation of methods for the extraction and purification of DNA from the human microbiome. PLoS One 2012. [PMID: 22457796 DOI: 10.1371/joumal.pone.0033865] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/02/2023]  Open
93
Devine SP, Pelletreau KN, Rumpho ME. 16S rDNA-based metagenomic analysis of bacterial diversity associated with two populations of the kleptoplastic sea slug Elysia chlorotica and its algal prey Vaucheria litorea. THE BIOLOGICAL BULLETIN 2012;223:138-154. [PMID: 22983039 DOI: 10.1086/bblv223n1p138] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
94
Nair A, Gopalan SV, George S, Kumar KS, Merilä J. Cross-species testing and utility of microsatellite loci in Indirana frogs. BMC Res Notes 2012;5:389. [PMID: 22838958 PMCID: PMC3441609 DOI: 10.1186/1756-0500-5-389] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2012] [Accepted: 07/13/2012] [Indexed: 11/10/2022]  Open
95
Jin HM, Kim JM, Lee HJ, Madsen EL, Jeon CO. Alteromonas as a key agent of polycyclic aromatic hydrocarbon biodegradation in crude oil-contaminated coastal sediment. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2012;46:7731-7740. [PMID: 22709320 DOI: 10.1021/es3018545] [Citation(s) in RCA: 63] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
96
Magwira CA, Kullin B, Lewandowski S, Rodgers A, Reid SJ, Abratt VR. Diversity of faecal oxalate-degrading bacteria in black and white South African study groups: insights into understanding the rarity of urolithiasis in the black group. J Appl Microbiol 2012;113:418-28. [PMID: 22616725 DOI: 10.1111/j.1365-2672.2012.05346.x] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2012] [Revised: 05/02/2012] [Accepted: 05/14/2012] [Indexed: 12/13/2022]
97
Comparative survey of rumen microbial communities and metabolites across one caprine and three bovine groups, using bar-coded pyrosequencing and ¹H nuclear magnetic resonance spectroscopy. Appl Environ Microbiol 2012;78:5983-93. [PMID: 22706048 DOI: 10.1128/aem.00104-12] [Citation(s) in RCA: 113] [Impact Index Per Article: 9.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]  Open
98
Greeff MR, Christison KW, Macey BM. Development and preliminary evaluation of a real-time PCR assay for Halioticida noduliformans in abalone tissues. DISEASES OF AQUATIC ORGANISMS 2012;99:103-117. [PMID: 22691979 DOI: 10.3354/dao02468] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
99
Isolation, identification and monitoring of contaminant bacteria in Iranian Kefir type drink by 16S rDNA sequencing. Food Control 2012. [DOI: 10.1016/j.foodcont.2011.12.017] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
100
Evaluation of methods for the extraction and purification of DNA from the human microbiome. PLoS One 2012;7:e33865. [PMID: 22457796 PMCID: PMC3311548 DOI: 10.1371/journal.pone.0033865] [Citation(s) in RCA: 343] [Impact Index Per Article: 28.6] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2011] [Accepted: 02/23/2012] [Indexed: 01/28/2023]  Open
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