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Ortiz A, Martinez-Murcia FJ, Luque JL, Giménez A, Morales-Ortega R, Ortega J. Dyslexia Diagnosis by EEG Temporal and Spectral Descriptors: An Anomaly Detection Approach. Int J Neural Syst 2020; 30:2050029. [PMID: 32496139 DOI: 10.1142/s012906572050029x] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
Abstract
Diagnosis of learning difficulties is a challenging goal. There are huge number of factors involved in the evaluation procedure that present high variance among the population with the same difficulty. Diagnosis is usually performed by scoring subjects according to results obtained in different neuropsychological (performance-based) tests specifically designed to this end. One of the most frequent disorders is developmental dyslexia (DD), a specific difficulty in the acquisition of reading skills not related to mental age or inadequate schooling. Its prevalence is estimated between 5% and 12% of the population. Traditional tests for DD diagnosis aim to measure different behavioral variables involved in the reading process. In this paper, we propose a diagnostic method not based on behavioral variables but on involuntary neurophysiological responses to different auditory stimuli. The experiments performed use electroencephalography (EEG) signals to analyze the temporal behavior and the spectral content of the signal acquired from each electrode to extract relevant (temporal and spectral) features. Moreover, the relationship of the features extracted among electrodes allows to infer a connectivity-like model showing brain areas that process auditory stimuli in a synchronized way. Then an anomaly detection system based on the reconstruction residuals of an autoencoder using these features has been proposed. Hence, classification is performed by the proposed system based on the differences in the resulting connectivity models that have demonstrated to be a useful tool for differential diagnosis of DD as well as a method to step towards gaining a better knowledge of the brain processes involved in DD. The results corroborate that nonspeech stimulus modulated at specific frequencies related to the sampling processes developed in the brain to capture rhymes, syllables and phonemes produces effects in specific frequency bands that differentiate between controls and DD subjects. The proposed method showed relatively high sensitivity above 0.6, and up to 0.9 in some of the experiments.
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Affiliation(s)
- Andrés Ortiz
- Department of Communications Engineering, University of Malaga, Campus de Teatinos s/n, 29071 Malaga, Spain.,Andalusian Research Institute in Data Science and Computational Intelligence (DaSCI), University of Granada, C/Periodista Daniel Saucedo Aranda s/n, 18071 Granada, Spain
| | - Francisco J Martinez-Murcia
- Department of Communications Engineering, University of Malaga, Campus de Teatinos s/n, 29071 Malaga, Spain.,Andalusian Research Institute in Data Science and Computational Intelligence (DaSCI), University of Granada, C/Periodista Daniel Saucedo Aranda s/n, 18071 Granada, Spain
| | - Juan L Luque
- Department of Developmental and Educational Psychology, University of Malaga, Campus de Teatinos s/n, 29071 Malaga, Spain
| | - Almudena Giménez
- Department of Basic Psychology, Faculty of Psychology, University of Malaga, Campus de Teatinos s/n, 29071 Malaga, Spain
| | - Roberto Morales-Ortega
- Department of Computer Architecture and Technology, University of Granada, Periodista Daniel Saucedo Aranda, 18071 Granada, Spain
| | - Julio Ortega
- Department of Computer Architecture and Technology, University of Granada, Periodista Daniel Saucedo Aranda, 18071 Granada, Spain
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52
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Ruffini G, Salvador R, Tadayon E, Sanchez-Todo R, Pascual-Leone A, Santarnecchi E. Realistic modeling of mesoscopic ephaptic coupling in the human brain. PLoS Comput Biol 2020; 16:e1007923. [PMID: 32479496 PMCID: PMC7289436 DOI: 10.1371/journal.pcbi.1007923] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/28/2019] [Revised: 06/11/2020] [Accepted: 05/01/2020] [Indexed: 11/29/2022] Open
Abstract
Several decades of research suggest that weak electric fields may influence neural processing, including those induced by neuronal activity and proposed as a substrate for a potential new cellular communication system, i.e., ephaptic transmission. Here we aim to model mesoscopic ephaptic activity in the human brain and explore its trajectory during aging by characterizing the electric field generated by cortical dipoles using realistic finite element modeling. Extrapolating from electrophysiological measurements, we first observe that modeled endogenous field magnitudes are comparable to those in measurements of weak but functionally relevant self-generated fields and to those produced by noninvasive transcranial brain stimulation, and therefore possibly able to modulate neuronal activity. Then, to evaluate the role of these fields in the human cortex in large MRI databases, we adapt an interaction approximation that considers the relative orientation of neuron and field to estimate the membrane potential perturbation in pyramidal cells. We use this approximation to define a simplified metric (EMOD1) that weights dipole coupling as a function of distance and relative orientation between emitter and receiver and evaluate it in a sample of 401 realistic human brain models from healthy subjects aged 16-83. Results reveal that ephaptic coupling, in the simplified mesoscopic modeling approach used here, significantly decreases with age, with higher involvement of sensorimotor regions and medial brain structures. This study suggests that by providing the means for fast and direct interaction between neurons, ephaptic modulation may contribute to the complexity of human function for cognition and behavior, and its modification across the lifespan and in response to pathology.
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Affiliation(s)
- Giulio Ruffini
- Neuroelectrics Corporation, Cambridge, Massachusetts, United States of America
- Neuroelectrics Barcelona, Barcelona, Spain
- Starlab Barcelona, Barcelona, Spain
| | | | - Ehsan Tadayon
- Berenson-Allen Center for Noninvasive Brain Stimulation, Beth Israel Deaconess Medical Center and Harvard Medical School, Boston, Massachusetts, United States of America
| | | | - Alvaro Pascual-Leone
- Hinda and Arthur Marcus Institute for Aging Research and Center for Memory Health, Hebrew SeniorLife, Boston, Massachusetts, United States of America
- Guttmann Brain Health Institut, Institut Guttmann, Universitat Autonoma Barcelona, Spain
- Department of Neurology, Harvard Medical School, Boston, Massachusetts, United States of America
| | - Emiliano Santarnecchi
- Berenson-Allen Center for Noninvasive Brain Stimulation, Beth Israel Deaconess Medical Center and Harvard Medical School, Boston, Massachusetts, United States of America
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53
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Nadalin JK, Martinet LE, Blackwood EB, Lo MC, Widge AS, Cash SS, Eden UT, Kramer MA. A statistical framework to assess cross-frequency coupling while accounting for confounding analysis effects. eLife 2019; 8:44287. [PMID: 31617848 PMCID: PMC6821458 DOI: 10.7554/elife.44287] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2018] [Accepted: 10/06/2019] [Indexed: 01/14/2023] Open
Abstract
Cross frequency coupling (CFC) is emerging as a fundamental feature of brain activity, correlated with brain function and dysfunction. Many different types of CFC have been identified through application of numerous data analysis methods, each developed to characterize a specific CFC type. Choosing an inappropriate method weakens statistical power and introduces opportunities for confounding effects. To address this, we propose a statistical modeling framework to estimate high frequency amplitude as a function of both the low frequency amplitude and low frequency phase; the result is a measure of phase-amplitude coupling that accounts for changes in the low frequency amplitude. We show in simulations that the proposed method successfully detects CFC between the low frequency phase or amplitude and the high frequency amplitude, and outperforms an existing method in biologically-motivated examples. Applying the method to in vivo data, we illustrate examples of CFC during a seizure and in response to electrical stimuli.
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Affiliation(s)
- Jessica K Nadalin
- Department of Mathematics and Statistics, Boston University, Boston, United States
| | | | - Ethan B Blackwood
- Department of Psychiatry, University of Minnesota, Minneapolis, United States
| | - Meng-Chen Lo
- Department of Psychiatry, University of Minnesota, Minneapolis, United States
| | - Alik S Widge
- Department of Psychiatry, University of Minnesota, Minneapolis, United States
| | - Sydney S Cash
- Department of Neurology, Massachusetts General Hospital, Boston, United States
| | - Uri T Eden
- Department of Mathematics and Statistics, Boston University, Boston, United States
| | - Mark A Kramer
- Department of Mathematics and Statistics, Boston University, Boston, United States
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54
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Abstract
Neural oscillations are widely studied using methods based on the Fourier transform, which models data as sums of sinusoids. This has successfully uncovered numerous links between oscillations and cognition or disease. However, neural data are nonsinusoidal, and these nonsinusoidal features are increasingly linked to a variety of behavioral and cognitive states, pathophysiology, and underlying neuronal circuit properties. We present a new analysis framework, one that is complementary to existing Fourier and Hilbert transform-based approaches, that quantifies oscillatory features in the time domain on a cycle-by-cycle basis. We have released this cycle-by-cycle analysis suite as "bycycle," a fully documented, open-source Python package with detailed tutorials and troubleshooting cases. This approach performs tests to assess whether an oscillation is present at any given moment and, if so, quantifies each oscillatory cycle by its amplitude, period, and waveform symmetry, the latter of which is missed with the use of conventional approaches. In a series of simulated event-related studies, we show how conventional Fourier and Hilbert transform approaches can conflate event-related changes in oscillation burst duration as increased oscillatory amplitude and as a change in the oscillation frequency, even though those features were unchanged in simulation. Our approach avoids these errors. Furthermore, we validate this approach in simulation and against experimental recordings of patients with Parkinson's disease, who are known to have nonsinusoidal beta (12-30 Hz) oscillations.NEW & NOTEWORTHY We introduce a fully documented, open-source Python package, bycycle, for analyzing neural oscillations on a cycle-by-cycle basis. This approach is complementary to traditional Fourier and Hilbert transform-based approaches but avoids specific pitfalls. First, bycycle confirms an oscillation is present, to avoid analyzing aperiodic, nonoscillatory data as oscillations. Next, it quantifies nonsinusoidal aspects of oscillations, increasingly linked to neural circuit physiology, behavioral states, and diseases. This approach is tested against simulated and real data.
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Affiliation(s)
- Scott Cole
- Neurosciences Graduate Program, University of California, San Diego, La Jolla, California
| | - Bradley Voytek
- Neurosciences Graduate Program, University of California, San Diego, La Jolla, California.,Department of Cognitive Science, University of California, San Diego, La Jolla, California.,Halıcıoğlu Data Science Institute, University of California, San Diego, La Jolla, California
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Miller AM, Miocinovic S, Swann NC, Rajagopalan SS, Darevsky DM, Gilron R, de Hemptinne C, Ostrem JL, Starr PA. Effect of levodopa on electroencephalographic biomarkers of the parkinsonian state. J Neurophysiol 2019; 122:290-299. [PMID: 31066605 DOI: 10.1152/jn.00141.2019] [Citation(s) in RCA: 30] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
Abstract
The objective of this study was to evaluate proposed electroencephalographic (EEG) biomarkers of Parkinson's disease (PD) and test their correlation with motor impairment in a new, well-characterized cohort of PD patients and controls. Sixty-four-channel EEG was recorded from 14 patients with rigid-akinetic PD with minimal tremor and from 14 age-matched healthy controls at rest and during voluntary movement. Patients were tested off and on medication during a single session. Recordings were analyzed for phase-amplitude coupling over sensorimotor cortex and for pairwise coherence from all electrode pairs in the recording montage (distributed coherence). Phase-amplitude coupling and distributed coherence were found to be elevated Off compared with On levodopa, and their reduction was correlated with motor improvement. In the Off medication state, phase-amplitude coupling was greater in sensorimotor contacts contralateral to the most affected body part and reduced by voluntary movement. We conclude that phase-amplitude coupling and distributed coherence are cortical biomarkers of the parkinsonian state that are detectable noninvasively and may be useful as objective aids for management of dopaminergic therapy. Several analytic methods may be used for noninvasive measurement of abnormal brain synchronization in PD. Calculation of phase-amplitude coupling requires only a single electrode over motor cortex. NEW & NOTEWORTHY Several EEG biomarkers of the parkinsonian state have been proposed that are related to abnormal cortical synchronization. We report several new findings in this study: correlations of EEG markers of synchronization with specific motor signs of Parkinson's disease (PD), and demonstration that one of the EEG markers, phase-amplitude coupling, is more elevated over the more clinically affected brain hemisphere. These findings underscore the potential utility of scalp EEG for objective, noninvasive monitoring of medication state in PD.
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Affiliation(s)
- Andrew M Miller
- Department of Neurological Surgery, University of California , San Francisco, California.,School of Medicine, University of Kansas , Kansas City, Kansas
| | | | - Nicole C Swann
- Department of Human Physiology, University of Oregon , Eugene, Oregon
| | - Sheila S Rajagopalan
- Department of Neurological Surgery, University of California , San Francisco, California
| | - David M Darevsky
- Department of Neurological Surgery, University of California , San Francisco, California.,Graduate Program in Neuroscience, University of California , San Francisco, California
| | - Ro'ee Gilron
- Department of Neurological Surgery, University of California , San Francisco, California
| | - Coralie de Hemptinne
- Department of Neurological Surgery, University of California , San Francisco, California
| | - Jill L Ostrem
- Department of Neurology, University of California , San Francisco, California.,Parkinson's Disease Research, Education and Clinical Center at the San Francisco Veteran's Affairs Medical Center , San Francisco, California
| | - Philip A Starr
- Department of Neurological Surgery, University of California , San Francisco, California.,Parkinson's Disease Research, Education and Clinical Center at the San Francisco Veteran's Affairs Medical Center , San Francisco, California.,Graduate Program in Neuroscience, University of California , San Francisco, California
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