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Sutherland C, Brambilla M, Pedrini P, Tenan S. A multiregion community model for inference about geographic variation in species richness. Methods Ecol Evol 2016. [DOI: 10.1111/2041-210x.12536] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
Affiliation(s)
- Chris Sutherland
- Department of Environmental Conservation University of Massachusetts Amherst MA 01003 USA
| | - Mattia Brambilla
- Vertebrate Zoology Section MUSE ‐ Museo delle Scienze Corso del Lavoro e della Scienza 3 I‐38122 Trento Italy
- Fondazione Lombardia per l'Ambiente Settore biodiversità e aree protette Largo 10 luglio 1976 1 I‐20822 Seveso (MB) Italy
| | - Paolo Pedrini
- Vertebrate Zoology Section MUSE ‐ Museo delle Scienze Corso del Lavoro e della Scienza 3 I‐38122 Trento Italy
| | - Simone Tenan
- Vertebrate Zoology Section MUSE ‐ Museo delle Scienze Corso del Lavoro e della Scienza 3 I‐38122 Trento Italy
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52
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Morelli F, Jerzak L, Pruscini F, Santolini R, Benedetti Y, Tryjanowski P. Testing bird response to roads on a rural environment: A case study from Central Italy. ACTA OECOLOGICA 2015. [DOI: 10.1016/j.actao.2015.10.006] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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53
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Gwinn DC, Allen MS, Bonvechio KI, V. Hoyer M, Beesley LS. Evaluating estimators of species richness: the importance of considering statistical error rates. Methods Ecol Evol 2015. [DOI: 10.1111/2041-210x.12462] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Daniel C. Gwinn
- Biometric Research LLC Gainesville FL 32605 USA
- Program for Fisheries and Aquatic Sciences School of Forest Resources and Conservation University of Florida Gainesville FL 32653 USA
| | - Michael S. Allen
- Program for Fisheries and Aquatic Sciences School of Forest Resources and Conservation University of Florida Gainesville FL 32653 USA
- Nature Coast Biological Station Institute of Food and Agricultural Sciences University of Florida Gainesville FL 32603 USA
| | - Kimberly I. Bonvechio
- Florida Fish and Wildlife Conservation Commission Fish and Wildlife Research Institute Eustis FL 32726 USA
| | - Mark V. Hoyer
- Program for Fisheries and Aquatic Sciences School of Forest Resources and Conservation University of Florida Gainesville FL 32653 USA
| | - Leah S. Beesley
- Centre of Excellence in Natural Resource Management University of Western Australia Albany WA 6332 Australia
- Cooperative Research Centre for Water Sensitive Cities Clayton Vic. 3800 Australia
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Curtis JR, Robinson WD. Sixty years of change in avian communities of the Pacific Northwest. PeerJ 2015; 3:e1152. [PMID: 26339537 PMCID: PMC4558065 DOI: 10.7717/peerj.1152] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2015] [Accepted: 07/13/2015] [Indexed: 12/01/2022] Open
Abstract
Bird communities are influenced by local and regional processes. The degree to which communities are dynamic has implications for projecting responses in community composition as birds track geographic shifts of their habitats. Historic datasets offer a legacy of information that can be used to quantify changes over time in avian community composition. A rare, highly-detailed avian survey of multiple habitat types in the Willamette Valley, Oregon, was conducted in 1952. We resurveyed the same sites in 2013 and evaluated whether observed results agreed with theoretical patterns of community change. We compared alpha, beta, and gamma diversity between survey periods and evaluated shifts in categorical abundances of species. Most patterns of change were consistent with community turnover. Nearly 50% of species were replaced over six decades, with increased species richness and decreased evenness at local and regional spatial extents. Patterns of regional species turnover reflected local turnover. Evidence that local shifts in habitat type drove bird community change were not strongly supported, although historic data on habitats within study plots were limited to macro-level aerial photographs. Thus, regional factors and structural changes likely played important roles determining species composition and abundance.
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Affiliation(s)
- Jenna R Curtis
- Department of Fisheries & Wildlife, Oregon State University , Corvallis, OR , United States
| | - W Douglas Robinson
- Department of Fisheries & Wildlife, Oregon State University , Corvallis, OR , United States
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55
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McNew LB, Handel CM. Evaluating species richness: Biased ecological inference results from spatial heterogeneity in detection probabilities. ECOLOGICAL APPLICATIONS : A PUBLICATION OF THE ECOLOGICAL SOCIETY OF AMERICA 2015; 25:1669-1680. [PMID: 26552273 DOI: 10.1890/14-1248.1] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
Accurate estimates of species richness are necessary to test predictions of ecological theory and evaluate biodiversity for conservation purposes. However, species richness is difficult to measure in the field because some species will almost always be overlooked due to their cryptic nature or the observer's failure to perceive their cues. Common measures of species richness that assume consistent observability across species are inviting because they may require only single counts of species at survey sites. Single-visit estimation methods ignore spatial and temporal variation in species detection probabilities related to survey or site conditions that may confound estimates of species richness. We used simulated and empirical data to evaluate the bias and precision of raw species counts, the limiting forms of jackknife and Chao estimators, and multispecies occupancy models when estimating species richness to evaluate whether the choice of estimator can affect inferences about the relationships between environmental conditions and community size under variable detection processes. Four simulated scenarios with realistic and variable detection processes were considered. Results of simulations indicated that (1) raw species counts were always biased low, (2) single-visit jackknife and Chao estimators were significantly biased regardless of detection process, (3) multispecies occupancy models were more precise and generally less biased than the jackknife and Chao estimators, and (4) spatial heterogeneity resulting from the effects of a site covariate on species detection probabilities had significant impacts on the inferred relationships between species richness and a spatially explicit environmental condition. For a real data set of bird observations in northwestern Alaska, USA, the four estimation methods produced different estimates of local species richness, which severely affected inferences about the effects of shrubs on local avian richness. Overall, our results indicate that neglecting the effects of site covariates on species detection probabilities may lead to significant bias in estimation of species richness, as well as the inferred relationships between community size and environmental covariates.
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56
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Jarnevich CS, Stohlgren TJ, Kumar S, Morisette JT, Holcombe TR. Caveats for correlative species distribution modeling. ECOL INFORM 2015. [DOI: 10.1016/j.ecoinf.2015.06.007] [Citation(s) in RCA: 164] [Impact Index Per Article: 18.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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57
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Detection Probabilities of Electrofishing, Hoop Nets, and Benthic Trawls for Fishes in Two Western North American Rivers. JOURNAL OF FISH AND WILDLIFE MANAGEMENT 2015. [DOI: 10.3996/022015-jfwm-011] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Abstract
Research comparing different sampling techniques helps improve the efficiency and efficacy of sampling efforts. We compared the effectiveness of three sampling techniques (small-mesh hoop nets, benthic trawls, boat-mounted electrofishing) for 30 species in the Green (WY, USA) and Kootenai (ID, USA) rivers by estimating conditional detection probabilities (probability of detecting a species given its presence at a site). Electrofishing had the highest detection probabilities (generally greater than 0.60) for most species (88%), but hoop nets also had high detectability for several taxa (e.g., adult burbot Lota lota, juvenile northern pikeminnow Ptychocheilus oregonensis). Benthic trawls had low detection probabilities (<0.05) for most taxa (84%). Gear-specific effects were present for most species indicating large differences in gear effectiveness among techniques. In addition to gear effects, habitat characteristics also influenced detectability of fishes. Most species-specific habitat relationships were idiosyncratic and reflected the ecology of the species. Overall findings of our study indicate that boat-mounted electrofishing and hoop nets are the most effective techniques for sampling fish assemblages in large, coldwater rivers.
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58
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Morelli F. Indicator species for avian biodiversity hotspots: Combination of specialists and generalists is necessary in less natural environments. J Nat Conserv 2015. [DOI: 10.1016/j.jnc.2015.06.006] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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59
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Anderson AS, Marques TA, Shoo LP, Williams SE. Detectability in Audio-Visual Surveys of Tropical Rainforest Birds: The Influence of Species, Weather and Habitat Characteristics. PLoS One 2015; 10:e0128464. [PMID: 26110433 PMCID: PMC4482497 DOI: 10.1371/journal.pone.0128464] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2013] [Accepted: 04/27/2015] [Indexed: 11/17/2022] Open
Abstract
Indices of relative abundance do not control for variation in detectability, which can bias density estimates such that ecological processes are difficult to infer. Distance sampling methods can be used to correct for detectability, but in rainforest, where dense vegetation and diverse assemblages complicate sampling, information is lacking about factors affecting their application. Rare species present an additional challenge, as data may be too sparse to fit detection functions. We present analyses of distance sampling data collected for a diverse tropical rainforest bird assemblage across broad elevational and latitudinal gradients in North Queensland, Australia. Using audio and visual detections, we assessed the influence of various factors on Effective Strip Width (ESW), an intuitively useful parameter, since it can be used to calculate an estimate of density from count data. Body size and species exerted the most important influence on ESW, with larger species detectable over greater distances than smaller species. Secondarily, wet weather and high shrub density decreased ESW for most species. ESW for several species also differed between summer and winter, possibly due to seasonal differences in calling behavior. Distance sampling proved logistically intensive in these environments, but large differences in ESW between species confirmed the need to correct for detection probability to obtain accurate density estimates. Our results suggest an evidence-based approach to controlling for factors influencing detectability, and avenues for further work including modeling detectability as a function of species characteristics such as body size and call characteristics. Such models may be useful in developing a calibration for non-distance sampling data and for estimating detectability of rare species.
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Affiliation(s)
- Alexander S Anderson
- Centre for Tropical Biodiversity and Climate Change, College of Marine & Environmental Sciences, James Cook University, Townsville, Queensland, Australia
| | - Tiago A Marques
- Research Unit for Wildlife Population Assessment, Centre for Research into Ecological and Environmental Modeling, University of St Andrews, The Observatory, Buchanan Gardens, St Andrews, Scotland
| | - Luke P Shoo
- School of Biological Sciences, The University of Queensland, St. Lucia, Queensland, Australia
| | - Stephen E Williams
- Centre for Tropical Biodiversity and Climate Change, College of Marine & Environmental Sciences, James Cook University, Townsville, Queensland, Australia
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60
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Methodological challenges in monitoring bat population- and assemblage-level changes for anthropogenic impact assessment. Mamm Biol 2015. [DOI: 10.1016/j.mambio.2014.11.002] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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61
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Lesmeister DB, Nielsen CK, Schauber EM, Hellgren EC. Spatial and temporal structure of a mesocarnivore guild in midwestern north America. WILDLIFE MONOGRAPHS 2015. [DOI: 10.1002/wmon.1015] [Citation(s) in RCA: 129] [Impact Index Per Article: 14.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Damon B. Lesmeister
- Cooperative Wildlife Research Laboratory, Department of Zoology; Center for Ecology; Southern Illinois University; 251 Life Science II Carbondale IL 62901 USA
| | - Clayton K. Nielsen
- Cooperative Wildlife Research Laboratory, Department of Zoology; Center for Ecology; Southern Illinois University; 251 Life Science II Carbondale IL 62901 USA
| | - Eric M. Schauber
- Cooperative Wildlife Research Laboratory, Department of Zoology; Center for Ecology; Southern Illinois University; 251 Life Science II Carbondale IL 62901 USA
| | - Eric C. Hellgren
- Cooperative Wildlife Research Laboratory, Department of Zoology; Center for Ecology; Southern Illinois University; 251 Life Science II Carbondale IL 62901 USA
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62
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Volvenko IV. The comparative statuses of the Far Eastern seas and the northwestern Pacific Ocean based on the range of integral characteristics of pelagic and bottom trawl macrofauna. JOURNAL OF ASIA-PACIFIC BIODIVERSITY 2015. [DOI: 10.1016/j.japb.2015.01.006] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022] Open
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63
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Kellner KF, Swihart RK. Accounting for imperfect detection in ecology: a quantitative review. PLoS One 2014; 9:e111436. [PMID: 25356904 PMCID: PMC4214722 DOI: 10.1371/journal.pone.0111436] [Citation(s) in RCA: 107] [Impact Index Per Article: 10.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2014] [Accepted: 10/02/2014] [Indexed: 11/25/2022] Open
Abstract
Detection in studies of species abundance and distribution is often imperfect. Assuming perfect detection introduces bias into estimation that can weaken inference upon which understanding and policy are based. Despite availability of numerous methods designed to address this assumption, many refereed papers in ecology fail to account for non-detection error. We conducted a quantitative literature review of 537 ecological articles to measure the degree to which studies of different taxa, at various scales, and over time have accounted for imperfect detection. Overall, just 23% of articles accounted for imperfect detection. The probability that an article incorporated imperfect detection increased with time and varied among taxa studied; studies of vertebrates were more likely to incorporate imperfect detection. Among articles that reported detection probability, 70% contained per-survey estimates of detection that were less than 0.5. For articles in which constancy of detection was tested, 86% reported significant variation. We hope that our findings prompt more ecologists to consider carefully the detection process when designing studies and analyzing results, especially for sub-disciplines where incorporation of imperfect detection in study design and analysis so far has been lacking.
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Affiliation(s)
- Kenneth F. Kellner
- Department of Forestry and Natural Resources, Purdue University, West Lafayette, Indiana, United States of America
- * E-mail:
| | - Robert K. Swihart
- Department of Forestry and Natural Resources, Purdue University, West Lafayette, Indiana, United States of America
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64
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Maravalhas J, Vasconcelos HL. Revisiting the pyrodiversity-biodiversity hypothesis: long-term fire regimes and the structure of ant communities in a Neotropical savanna hotspot. J Appl Ecol 2014. [DOI: 10.1111/1365-2664.12338] [Citation(s) in RCA: 59] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Jonas Maravalhas
- Programa de Pós-Graduação em Ecologia e Conservação de Recursos Naturais; Universidade Federal de Uberlândia (UFU); Av. Pará 1720 38400-902 Uberlândia MG Brazil
| | - Heraldo L. Vasconcelos
- Programa de Pós-Graduação em Ecologia e Conservação de Recursos Naturais; Universidade Federal de Uberlândia (UFU); Av. Pará 1720 38400-902 Uberlândia MG Brazil
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65
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Reliability of different mark-recapture methods for population size estimation tested against reference population sizes constructed from field data. PLoS One 2014; 9:e98840. [PMID: 24896260 PMCID: PMC4045897 DOI: 10.1371/journal.pone.0098840] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2013] [Accepted: 05/07/2014] [Indexed: 11/19/2022] Open
Abstract
Reliable estimates of population size are fundamental in many ecological studies and biodiversity conservation. Selecting appropriate methods to estimate abundance is often very difficult, especially if data are scarce. Most studies concerning the reliability of different estimators used simulation data based on assumptions about capture variability that do not necessarily reflect conditions in natural populations. Here, we used data from an intensively studied closed population of the arboreal gecko Gehyra variegata to construct reference population sizes for assessing twelve different population size estimators in terms of bias, precision, accuracy, and their 95%-confidence intervals. Two of the reference populations reflect natural biological entities, whereas the other reference populations reflect artificial subsets of the population. Since individual heterogeneity was assumed, we tested modifications of the Lincoln-Petersen estimator, a set of models in programs MARK and CARE-2, and a truncated geometric distribution. Ranking of methods was similar across criteria. Models accounting for individual heterogeneity performed best in all assessment criteria. For populations from heterogeneous habitats without obvious covariates explaining individual heterogeneity, we recommend using the moment estimator or the interpolated jackknife estimator (both implemented in CAPTURE/MARK). If data for capture frequencies are substantial, we recommend the sample coverage or the estimating equation (both models implemented in CARE-2). Depending on the distribution of catchabilities, our proposed multiple Lincoln-Petersen and a truncated geometric distribution obtained comparably good results. The former usually resulted in a minimum population size and the latter can be recommended when there is a long tail of low capture probabilities. Models with covariates and mixture models performed poorly. Our approach identified suitable methods and extended options to evaluate the performance of mark-recapture population size estimators under field conditions, which is essential for selecting an appropriate method and obtaining reliable results in ecology and conservation biology, and thus for sound management.
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66
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Banks-Leite C, Pardini R, Boscolo D, Cassano CR, Püttker T, Barros CS, Barlow J. Assessing the utility of statistical adjustments for imperfect detection in tropical conservation science. J Appl Ecol 2014; 51:849-859. [PMID: 25177046 PMCID: PMC4144333 DOI: 10.1111/1365-2664.12272] [Citation(s) in RCA: 84] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2013] [Accepted: 04/14/2014] [Indexed: 11/30/2022]
Abstract
In recent years, there has been a fast development of models that adjust for imperfect detection. These models have revolutionized the analysis of field data, and their use has repeatedly demonstrated the importance of sampling design and data quality. There are, however, several practical limitations associated with the use of detectability models which restrict their relevance to tropical conservation science. We outline the main advantages of detectability models, before examining their limitations associated with their applicability to the analysis of tropical communities, rare species and large‐scale data sets. Finally, we discuss whether detection probability needs to be controlled before and/or after data collection. Models that adjust for imperfect detection allow ecologists to assess data quality by estimating uncertainty and to obtain adjusted ecological estimates of populations and communities. Importantly, these models have allowed informed decisions to be made about the conservation and management of target species. Data requirements for obtaining unadjusted estimates are substantially lower than for detectability‐adjusted estimates, which require relatively high detection/recapture probabilities and a number of repeated surveys at each location. These requirements can be difficult to meet in large‐scale environmental studies where high levels of spatial replication are needed, or in the tropics where communities are composed of many naturally rare species. However, while imperfect detection can only be adjusted statistically, covariates of detection probability can also be controlled through study design. Using three study cases where we controlled for covariates of detection probability through sampling design, we show that the variation in unadjusted ecological estimates from nearly 100 species was qualitatively the same as that obtained from adjusted estimates. Finally, we discuss that the decision as to whether one should control for covariates of detection probability through study design or statistical analyses should be dependent on study objectives. Synthesis and applications. Models that adjust for imperfect detection are an important part of an ecologist's toolkit, but they should not be uniformly adopted in all studies. Ecologists should never let the constraints of models dictate which questions should be pursued or how the data should be analysed, and detectability models are no exception. We argue for pluralism in scientific methods, particularly where cost‐effective applied ecological science is needed to inform conservation policy at a range of different scales and in many different systems.
Models that adjust for imperfect detection are an important part of an ecologist's toolkit, but they should not be uniformly adopted in all studies. Ecologists should never let the constraints of models dictate which questions should be pursued or how the data should be analysed, and detectability models are no exception. We argue for pluralism in scientific methods, particularly where cost‐effective applied ecological science is needed to inform conservation policy at a range of different scales and in many different systems.
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Affiliation(s)
- Cristina Banks-Leite
- Grand Challenges in Ecosystems and the Environment, Department of Life Sciences, Imperial College London Silwood Park Campus, Ascot, SL5 7PY, UK ; Departmento de Ecologia, Instituto de Biociências, Universidade de São Paulo Rua do Matão, 101, trav. 14, São Paulo, SP, 05508-090, Brazil
| | - Renata Pardini
- Departmento de Zoologia, Instituto de Biociências, Universidade de São Paulo Rua do Matão, 101, trav. 14, São Paulo, SP, 05508-090, Brazil
| | - Danilo Boscolo
- Departamento de Biologia, Faculdade de Filosofia Ciências e Letras de Ribeirão Preto, Universidade de São Paulo - USP Av. Bandeirantes 3900, Ribeirão Preto, 14040-901, Brazil
| | - Camila Righetto Cassano
- Departmento de Ecologia, Instituto de Biociências, Universidade de São Paulo Rua do Matão, 101, trav. 14, São Paulo, SP, 05508-090, Brazil ; Departamento de Ciências Biológicas, Universidade Estadual de Santa Cruz Campus Prof. Soane Nazaré de Andrade, Km 16 - Rodovia Jorge Amado, Ilhéus, BA, 45662-900, Brazil
| | - Thomas Püttker
- Departmento de Zoologia, Instituto de Biociências, Universidade de São Paulo Rua do Matão, 101, trav. 14, São Paulo, SP, 05508-090, Brazil
| | - Camila Santos Barros
- Departmento de Ecologia, Instituto de Biociências, Universidade de São Paulo Rua do Matão, 101, trav. 14, São Paulo, SP, 05508-090, Brazil
| | - Jos Barlow
- Lancaster Environment Centre, Lancaster University Lancaster, LA1 4YQ, UK ; Museu Paraense Emílio Goeldi Av. Magalhães Barata 376, Belém, Pará, CEP 66040-170, Brazil
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67
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Hyde JM, Stewart PM, Miller JM. Species Richness Estimation and Rarefaction of Fish Assemblages in a Small Watershed. SOUTHEAST NAT 2014. [DOI: 10.1656/058.013.0204] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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68
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Grundel R, Frohnapple KJ, Zaya DN, Glowacki GA, Weiskerger CJ, Patterson TA, Pavlovic NB. Geographic coincidence of richness, mass, conservation value, and response to climate of U.S. land birds. ECOLOGICAL APPLICATIONS : A PUBLICATION OF THE ECOLOGICAL SOCIETY OF AMERICA 2014; 24:791-811. [PMID: 24988777 DOI: 10.1890/12-0823.1] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
Distributional patterns across the United States of five avian community breeding-season characteristics--community biomass, richness, constituent species' vulnerability to extirpation, percentage of constituent species' global abundance present in the community (conservation index, CI), and the community's position along the ecological gradient underlying species composition (principal curve ordination score, PC--were described, their covariation was analyzed, and projected effects of climate change on the characteristics and their covariation were modeled. Higher values of biomass, richness, and CI were generally preferred from a conservation perspective. However, higher values of these characteristics often did not coincide geographically; thus regions of the United States would differ in their value for conservation depending on which characteristic was chosen for setting conservation priorities. For instance, correlation patterns between characteristics differed among Landscape Conservation Cooperatives. Among the five characteristics, community richness and the ecological gradient underlying community composition (PC) had the highest correlations with longitude, with richness declining from east to west across the contiguous United States. The ecological gradient underlying composition exhibited a demarcation near the 100th meridian, separating the contiguous United States grossly into two similar-sized avian ecological provinces. The combined score (CS), a measure of species' threat of decline or extirpation, exhibited the strongest latitudinal pattern, declining from south to north. Over -75% of the lower United States, projected changes in June temperature and precipitation to year 2080 were associated with decreased averaged values of richness, biomass, and CI, implying decreased conservation value for birds. The two ecological provinces demarcated near the 100th meridian diverged from each other, with projected changes in June temperatures and precipitation from the year 2000 to 2080 suggesting increased ecological dissimilarity between the eastern and western halves of the lower United States with changing climate. Anticipated climate-related changes in the five characteristics by 2080 were more weakly correlated with latitude or longitude then the responses themselves, indicating less distinct geographic patterns of characteristic change than in the characteristics themselves. Climate changes projected for 2080 included geographic shifts in avian biomass, CS, and PC values, a moderate overall decline in CI, and general decline in species richness per site.
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69
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Gagnon Lupien N, Gauthier G, Lavoie C. Effect of the invasive common reed on the abundance, richness and diversity of birds in freshwater marshes. Anim Conserv 2014. [DOI: 10.1111/acv.12135] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- N. Gagnon Lupien
- Département de biologie; Université Laval; Quebec City Quebec Canada
| | - G. Gauthier
- Département de biologie; Université Laval; Quebec City Quebec Canada
| | - C. Lavoie
- École Supérieure d'Aménagement du Territoire et de Développement Régional; Université Laval; Quebec City Quebec Canada
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70
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Sanderlin JS, Block WM, Ganey JL. Optimizing study design for multi-species avian monitoring programmes. J Appl Ecol 2014. [DOI: 10.1111/1365-2664.12252] [Citation(s) in RCA: 36] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Jamie S. Sanderlin
- Rocky Mountain Research Station; U. S. Forest Service; 2500 S. Pine Knoll Dr. Flagstaff AZ 86001 USA
| | - William M. Block
- Rocky Mountain Research Station; U. S. Forest Service; 2500 S. Pine Knoll Dr. Flagstaff AZ 86001 USA
| | - Joseph L. Ganey
- Rocky Mountain Research Station; U. S. Forest Service; 2500 S. Pine Knoll Dr. Flagstaff AZ 86001 USA
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71
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Carneiro E, Mielke OHH, Casagrande MM, Fiedler K. Skipper Richness (Hesperiidae) Along Elevational Gradients in Brazilian Atlantic Forest. NEOTROPICAL ENTOMOLOGY 2014; 43:27-38. [PMID: 27193401 DOI: 10.1007/s13744-013-0175-8] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/15/2013] [Accepted: 09/20/2013] [Indexed: 06/05/2023]
Abstract
Hesperiidae are claimed to be a group of elusive butterflies that need major effort for sampling, thus being frequently omitted from tropical butterfly surveys. As no studies have associated species richness patterns of butterflies with environmental gradients of high altitudes in Brazil, we surveyed Hesperiidae ensembles in Serra do Mar along elevational transects (900-1,800 m above sea level) on three mountains. Transects were sampled 11-12 times on each mountain to evaluate how local species richness is influenced by mountain region, vegetation type, and elevational zones. Patterns were also analyzed for the subfamilies, and after disregarding species that exhibit hilltopping behavior. Species richness was evaluated by the observed richness, Jacknife2 estimator and Chao 1 estimator standardized by sample coverage. Overall, 155 species were collected, but extrapolation algorithms suggest a regional richness of about 220 species. Species richness was far higher in forest than in early successional vegetation or grassland. Richness decreased with elevation, and was higher on Anhangava mountain compared with the two others. Patterns were similar between observed and extrapolated Jacknife2 richness, but vegetation type and mountain richness became altered using sample coverage standardization. Hilltopping species were more easily detected than species that do not show this behavior; however, their inclusion did neither affect estimated richness nor modify the shape of the species accumulation curve. This is the first contribution to systematically study highland butterflies in southern Brazil where all records above 1,200 m are altitudinal extensions of the known geographical ranges of skipper species in the region.
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Affiliation(s)
- E Carneiro
- Lab de Estudos de Lepidoptera Neotropical, Depto de Zoologia, Univ Federal do Paraná, Caixa Postal 19020, 81531-980, Curitiba, PR, Brasil.
| | - O H H Mielke
- Lab de Estudos de Lepidoptera Neotropical, Depto de Zoologia, Univ Federal do Paraná, Caixa Postal 19020, 81531-980, Curitiba, PR, Brasil
| | - M M Casagrande
- Lab de Estudos de Lepidoptera Neotropical, Depto de Zoologia, Univ Federal do Paraná, Caixa Postal 19020, 81531-980, Curitiba, PR, Brasil
| | - K Fiedler
- Dept of Tropical Ecology and Animal Biodiversity, Fac of Life Sciences, Univ of Vienna, Vienna, Austria
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72
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Understanding the patchy distribution of four-horned antelope Tetracerus quadricornis in a tropical dry deciduous forest in Central India. JOURNAL OF TROPICAL ECOLOGY 2013. [DOI: 10.1017/s0266467413000722] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Abstract
Abstract:At the landscape level, the four-horned antelope is confined to tropical dry deciduous forests and within these, their distribution is patchy. Various factors have been proposed as determinants for their patchy distribution within landscapes, but none provided an adequate explanation. We hypothesized that availability of a constant supply of forage influenced the species distribution. We found that the four-horned antelope mainly fed on fruits and flowers, and that a total of 60% of the tree species in Panna Tiger Reserve bore fruits at different times of the year. High tree species richness in habitat patches was considered a surrogate for constant supply of forage for the four-horned antelope. Data from 547 sighting locations between 2002 and 2006 and six spatial layers were analysed using maximum entropy to produce a probability distribution model for the four-horned antelope in Panna Tiger Reserve. Our model predicted that habitat patches summing up to only 9.5% of the 543 km2 of Panna Tiger Reserve had high probability of distribution (>0.5) of four-horned antelope. Although all variables contributed to the distribution model of the four-horned antelope, explanatory power was highest for tree species richness within habitat patches. The distribution of four-horned antelope within tropical dry deciduous forests can be treated as an indicator of high tree diversity and hence habitat quality.
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73
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Klaver RW, Peterson CR, Patla DA. Influence of Water Conductivity on Amphibian Occupancy in the Greater Yellowstone Ecosystem. WEST N AM NATURALIST 2013. [DOI: 10.3398/064.073.0208] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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74
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Reese GC, Wilson KR, Flather CH. Program SimAssem: software for simulating species assemblages and estimating species richness. Methods Ecol Evol 2013. [DOI: 10.1111/2041-210x.12070] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
Affiliation(s)
- Gordon C. Reese
- Department of Fish, Wildlife, and Conservation Biology; Colorado State University; Fort Collins; CO; 80523; USA
| | - Kenneth R. Wilson
- Department of Fish, Wildlife, and Conservation Biology; Colorado State University; Fort Collins; CO; 80523; USA
| | - Curtis H. Flather
- Rocky Mountain Research Station; U.S. Forest Service; Fort Collins; CO; 80526; USA
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75
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Princé K, Jiguet F. Ecological effectiveness of French grassland agri-environment schemes for farmland bird communities. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2013; 121:110-116. [PMID: 23535512 DOI: 10.1016/j.jenvman.2013.02.039] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/23/2012] [Revised: 02/21/2013] [Accepted: 02/25/2013] [Indexed: 06/02/2023]
Abstract
Agri-environment schemes (AES) have been implemented to cope with the loss of farmland biodiversity due to agricultural intensification over the last decades. In France, grassland measures (more closely linked to extensive grazing) are the most widely implemented within the French AES, and are presumably those whose effectiveness can be better assessed. In this paper, we have evaluated the effectiveness of French grassland agri-environmental measures (gAES) to enhance farmland bird diversity on a national scale, using local abundances of 19 farmland breeding birds within 463 Small Agricultural Regions (SAR) covering France during 2001-2008. We modeled responses of species abundances and estimated species richness to five categories of grassland AES, accounting for the characteristics of local production systems. Extensive management of grasslands had a positive effect on species richness. Despite mixed results on the effectiveness of the different grassland AES categories, our results are optimistic in terms of the ability of some French AES to provide benefits to birds. It seems that some grassland AES have achieved their objectives while meeting species ecological requirements. Moreover, this study highlights the fact that some of these grassland AES have the potential to enhance the population dynamics of declining species. Finally, although they all aim at benefitting biodiversity, it cannot be assumed that grassland measures lead to uniform conservation benefits.
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Affiliation(s)
- Karine Princé
- UMR 7204 MNHN-CNRS-UPMC, Centre de Recherches sur la Biologie des Populations d'Oiseaux, CP 51, 55 rue Buffon, 75005 Paris, France.
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76
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Variability in abundance of temperate reef fishes estimated by visual census. PLoS One 2013; 8:e61072. [PMID: 23593395 PMCID: PMC3617182 DOI: 10.1371/journal.pone.0061072] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2012] [Accepted: 03/05/2013] [Indexed: 11/19/2022] Open
Abstract
Identifying sources of sampling variation and quantifying their magnitude is critical to the interpretation of ecological field data. Yet, most monitoring programs of reef fish populations based on underwater visual censuses (UVC) consider only a few of the factors that may influence fish counts, such as the diver or census methodology. Recent studies, however, have drawn attention to a broader range of processes that introduce variability at different temporal scales. This study analyzes the magnitude of different sources of variation in UVCs of temperate reef fishes off Patagonia (Argentina). The variability associated with time-of-day, tidal state, and time elapsed between censuses (minutes, days, weeks and months) was quantified for censuses conducted on the five most conspicuous and common species: Pinguipes brasilianus, Pseudopercis semifasciata, Sebastes oculatus, Acanthistius patachonicus and Nemadactylus bergi. Variance components corresponding to spatial heterogeneity and to the different temporal scales were estimated using nested random models. The levels of variability estimated for the different species were related to their life history attributes and behavior. Neither time-of-day nor tidal state had a significant effect on counts, except for the influence of tide on P. brasilianus. Spatial heterogeneity was the dominant source of variance in all but one species. Among the temporal scales, the intra-annual variation was the highest component for most species due to marked seasonal fluctuations in abundance, followed by the weekly and the instantaneous variation; the daily component was not significant. The variability between censuses conducted at different tidal levels and time-of-day was similar in magnitude to the instantaneous variation, reinforcing the conclusion that stochastic variation at very short time scales is non-negligible and should be taken into account in the design of monitoring programs and experiments. The present study provides baseline information to design and interpret results from visual census programs in temperate reefs.
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77
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Roche EA, Brown CR, Brown MB, Lear KM. Recapture heterogeneity in cliff swallows: increased exposure to mist nets leads to net avoidance. PLoS One 2013; 8:e58092. [PMID: 23472138 PMCID: PMC3589455 DOI: 10.1371/journal.pone.0058092] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2012] [Accepted: 02/03/2013] [Indexed: 11/19/2022] Open
Abstract
Ecologists often use mark-recapture to estimate demographic variables such as abundance, growth rate, or survival for samples of wild animal populations. A common assumption underlying mark-recapture is that all animals have an equal probability of detection, and failure to meet or correct for this assumption-as when certain members of the population are either easier or more difficult to capture than other animals-can lead to biased and inaccurate demographic estimates. We built within-year and among-years Cormack-Jolly-Seber recaptures-only models to identify causes of capture heterogeneity for a population of colonially nesting cliff swallows (Petrochelidon pyrrhonota) caught using mist-netting as a part of a 20-year mark-recapture study in southwestern Nebraska, U.S.A. Daily detection of cliff swallows caught in stationary mist nets at their colony sites declined as the birds got older and as the frequency of netting at a site within a season increased. Experienced birds' avoidance of the net could be countered by sudden disturbances that startled them into a net, such as when we dropped a net over the side of a bridge or flushed nesting cliff swallows into a stationary net positioned at a colony entrance. Our results support the widely held, but seldom tested, belief that birds learn to avoid stationary mist nets over time, but also show that modifications of traditional field methods can reduce this source of recapture heterogeneity.
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Affiliation(s)
- Erin A Roche
- Department of Biological Sciences, University of Tulsa, Tulsa, Oklahoma, USA.
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78
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Parry G, Bodger O, McDonald R, Forman D. A systematic re-sampling approach to assess the probability of detecting otters Lutra lutra using spraint surveys on small lowland rivers. ECOL INFORM 2013. [DOI: 10.1016/j.ecoinf.2012.11.002] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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79
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Wells K, O'Hara RB. Species interactions: estimating per-individual interaction strength and covariates before simplifying data into per-species ecological networks. Methods Ecol Evol 2012. [DOI: 10.1111/j.2041-210x.2012.00249.x] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
| | - Robert B. O'Hara
- Biodiversity and Climate Research Centre (BiK-F); Senckenberganlage 25; D-60325; Frankfurt (Main); Germany
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80
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Do terrestrial protected areas conserve freshwater fish diversity? Results from the Western Ghats of India. ORYX 2012. [DOI: 10.1017/s0030605311000937] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
Abstract
AbstractTerrestrial protected areas are often designated in inaccessible high elevation regions, and usually targeted towards conservation of charismatic large mammals and birds. It has been suggested that such protected areas, with partial coverage of riverine habitats, may not be adequate for conservation of freshwater taxa such as fishes. Also, protected areas are often designated in upstream catchments of dam reservoirs, and conservation of freshwater biodiversity is usually not a priority. We investigated the importance of existing protected areas for conservation of stream fishes within and across three dammed and two undammed rivers in the southern Western Ghats, India (a global biodiversity hotspot). Comparisons of stream sites in protected and unprotected areas were restricted to mid elevations because of confounding factors of dams, elevation and stream order. For dammed rivers, endemic and total species richness was significantly higher inside protected areas than unprotected areas. Total fish species richness increased with decreasing elevation and endemic species richness peaked at mid elevations. Species found in comparable stream orders across dammed and undammed midland river reaches were similar. Intensity of threats such as sand mining, dynamite fishing, pollution and introduced invasive fishes was higher in unprotected than in protected areas. Lack of awareness among managers has also led to the occurrence of some threats within protected areas. However, existing protected areas are vital for conservation of endemic fishes. Our results support the need for extending the scope of terrestrial protected areas towards better representation of freshwater ecosystems and biodiversity.
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81
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Wintle BA, Walshe TV, Parris KM, McCarthy MA. Designing occupancy surveys and interpreting non-detection when observations are imperfect. DIVERS DISTRIB 2012. [DOI: 10.1111/j.1472-4642.2011.00874.x] [Citation(s) in RCA: 63] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022] Open
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82
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Skalak SL, Sherwin RE, Brigham RM. Sampling period, size and duration influence measures of bat species richness from acoustic surveys. Methods Ecol Evol 2012. [DOI: 10.1111/j.2041-210x.2011.00177.x] [Citation(s) in RCA: 64] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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83
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Huggins R, Hwang WH. A Review of the Use of Conditional Likelihood in Capture-Recapture Experiments. Int Stat Rev 2011. [DOI: 10.1111/j.1751-5823.2011.00157.x] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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84
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Galbraith JA, Fraser EA, Clout MN, Hauber ME. Survey duration and season influence the detection of introduced eastern rosella (Platycercus eximius) in New Zealand. NEW ZEALAND JOURNAL OF ZOOLOGY 2011. [DOI: 10.1080/03014223.2011.584541] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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85
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Archaux F, Henry PY, Gimenez O. When can we ignore the problem of imperfect detection in comparative studies? Methods Ecol Evol 2011. [DOI: 10.1111/j.2041-210x.2011.00142.x] [Citation(s) in RCA: 59] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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86
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Garamszegi LZ, Møller AP. Nonrandom variation in within-species sample size and missing data in phylogenetic comparative studies. Syst Biol 2011; 60:876-80. [PMID: 21712480 DOI: 10.1093/sysbio/syr060] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Affiliation(s)
- László Zsolt Garamszegi
- Department of Evolutionary Ecology, Estacion Biologica de Donana-CSIC, c/ Americo Vespucio s/n, Seville, Spain
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87
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Stouffer PC, Johnson EI, Bierregaard RO, Lovejoy TE. Understory bird communities in Amazonian rainforest fragments: species turnover through 25 years post-isolation in recovering landscapes. PLoS One 2011; 6:e20543. [PMID: 21731616 PMCID: PMC3120763 DOI: 10.1371/journal.pone.0020543] [Citation(s) in RCA: 73] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2011] [Accepted: 05/05/2011] [Indexed: 11/26/2022] Open
Abstract
Inferences about species loss following habitat conversion are typically drawn from short-term surveys, which cannot reconstruct long-term temporal dynamics of extinction and colonization. A long-term view can be critical, however, to determine the stability of communities within fragments. Likewise, landscape dynamics must be considered, as second growth structure and overall forest cover contribute to processes in fragments. Here we examine bird communities in 11 Amazonian rainforest fragments of 1–100 ha, beginning before the fragments were isolated in the 1980s, and continuing through 2007. Using a method that accounts for imperfect detection, we estimated extinction and colonization based on standardized mist-net surveys within discreet time intervals (1–2 preisolation samples and 4–5 post-isolation samples). Between preisolation and 2007, all fragments lost species in an area-dependent fashion, with loss of as few as <10% of preisolation species from 100-ha fragments, but up to 70% in 1-ha fragments. Analysis of individual time intervals revealed that the 2007 result was not due to gradual species loss beginning at isolation; both extinction and colonization occurred in every time interval. In the last two samples, 2000 and 2007, extinction and colonization were approximately balanced. Further, 97 of 101 species netted before isolation were detected in at least one fragment in 2007. Although a small subset of species is extremely vulnerable to fragmentation, and predictably goes extinct in fragments, developing second growth in the matrix around fragments encourages recolonization in our landscapes. Species richness in these fragments now reflects local turnover, not long-term attrition of species. We expect that similar processes could be operating in other fragmented systems that show unexpectedly low extinction.
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Affiliation(s)
- Philip C Stouffer
- School of Renewable Natural Resources, Louisiana State University Agricultural Center and Louisiana State University, Baton Rouge, Louisiana, United States of America.
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88
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Meyer CFJ, Aguiar LMS, Aguirre LF, Baumgarten J, Clarke FM, Cosson JF, Villegas SE, Fahr J, Faria D, Furey N, Henry M, Hodgkison R, Jenkins RKB, Jung KG, Kingston T, Kunz TH, Cristina MacSwiney Gonzalez M, Moya I, Patterson BD, Pons JM, Racey PA, Rex K, Sampaio EM, Solari S, Stoner KE, Voigt CC, von Staden D, Weise CD, Kalko EKV. Accounting for detectability improves estimates of species richness in tropical bat surveys. J Appl Ecol 2011. [DOI: 10.1111/j.1365-2664.2011.01976.x] [Citation(s) in RCA: 71] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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89
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Assessing conservation values: biodiversity and endemicity in tropical land use systems. PLoS One 2011; 6:e16238. [PMID: 21298054 PMCID: PMC3029302 DOI: 10.1371/journal.pone.0016238] [Citation(s) in RCA: 41] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2010] [Accepted: 12/17/2010] [Indexed: 11/20/2022] Open
Abstract
Despite an increasing amount of data on the effects of tropical land use on continental forest fauna and flora, it is debatable whether the choice of the indicator variables allows for a proper evaluation of the role of modified habitats in mitigating the global biodiversity crisis. While many single-taxon studies have highlighted that species with narrow geographic ranges especially suffer from habitat modification, there is no multi-taxa study available which consistently focuses on geographic range composition of the studied indicator groups. We compiled geographic range data for 180 bird, 119 butterfly, 204 tree and 219 understorey plant species sampled along a gradient of habitat modification ranging from near-primary forest through young secondary forest and agroforestry systems to annual crops in the southwestern lowlands of Cameroon. We found very similar patterns of declining species richness with increasing habitat modification between taxon-specific groups of similar geographic range categories. At the 8 km2 spatial level, estimated richness of endemic species declined in all groups by 21% (birds) to 91% (trees) from forests to annual crops, while estimated richness of widespread species increased by +101% (trees) to +275% (understorey plants), or remained stable (- 2%, butterflies). Even traditional agroforestry systems lost estimated endemic species richness by - 18% (birds) to - 90% (understorey plants). Endemic species richness of one taxon explained between 37% and 57% of others (positive correlations) and taxon-specific richness in widespread species explained up to 76% of variation in richness of endemic species (negative correlations). The key implication of this study is that the range size aspect is fundamental in assessments of conservation value via species inventory data from modified habitats. The study also suggests that even ecologically friendly agricultural matrices may be of much lower value for tropical conservation than indicated by mere biodiversity value.
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90
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Abstract
Estimation of abundance is important in both open and closed population capture-recapture analysis, but unmodeled heterogeneity of capture probability leads to negative bias in abundance estimates. This article defines and develops a suite of open population capture-recapture models using finite mixtures to model heterogeneity of capture and survival probabilities. Model comparisons and parameter estimation use likelihood-based methods. A real example is analyzed, and simulations are used to check the main features of the heterogeneous models, especially the quality of estimation of abundance, survival, recruitment, and turnover. The two major advances in this article are the provision of realistic abundance estimates that take account of heterogenetiy of capture, and an appraisal of the amount of overestimation of survival arising from conditioning on the first capture when heterogeneity of survival is present.
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Affiliation(s)
- Shirley Pledger
- School of Mathematics, Statistics and Operations Research, Victoria University of Wellington, Wellington, New Zealand.
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91
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Abstract
A variety of processes are thought to be involved in the formation and dynamics of species assemblages. For example, various metacommunity theories are based on differences in the relative contributions of dispersal of species among local communities and interactions of species within local communities. Interestingly, metacommunity theories continue to be advanced without much empirical validation. Part of the problem is that statistical models used to analyze typical survey data either fail to specify ecological processes with sufficient, complexity or they fail to account for errors in detection of species during sampling. In this paper, we describe a statistical modeling framework for the analysis of metacommunity dynamics that is based on the idea of adopting a unified approach, multispecies occupancy modeling, for computing inferences about individual species, local communities of species, or the entire metacommunity of species. This approach accounts for errors in detection of species during sampling and also allows different metacommunity paradigms to be specified in terms of species- and location-specific probabilities of occurrence, extinction, and colonization: all of which are estimable. In addition, this approach can be used to address inference problems that arise in conservation ecology, such as predicting temporal and spatial changes in biodiversity for use in making conservation decisions. To illustrate, we estimate changes in species composition associated with the species-specific phenologies of flight patterns of butterflies in Switzerland for the purpose of estimating regional differences in biodiversity.
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Affiliation(s)
- Robert M Dorazio
- U.S. Geological Survey and University of Florida, Department of Statistics, Gainesville, Florida 32611-0339, USA.
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92
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Gómez-Rodríguez C, Guisan A, Díaz-Paniagua C, Bustamante J. Application of Detection Probabilities to the Design of Amphibian Monitoring Programs in Temporary Ponds. ANN ZOOL FENN 2010. [DOI: 10.5735/086.047.0502] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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93
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Phillips LB, Hansen AJ, Flather CH, Robison-Cox J. Applying species--energy theory to conservation: a case study for North American birds. ECOLOGICAL APPLICATIONS : A PUBLICATION OF THE ECOLOGICAL SOCIETY OF AMERICA 2010; 20:2007-2023. [PMID: 21049886 DOI: 10.1890/09-0580.1] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/30/2023]
Abstract
Ecosystem energy is now recognized as a primary correlate and potential driver of global patterns of species richness. The increasingly well-tested species-energy relationship is now ripe for application to conservation, and recent advances in satellite technology make this more feasible. While the correlates for the species-energy relationship have been addressed many times previously, this study is among the first to apply species-energy theory to conservation. Our objectives were to: (1) determine the strongest model of bird richness across North America; (2) determine whether the slope of the best species-energy model varied with varying energy levels; and (3) identify the spatial patterns with similar or dissimilar slopes to draw inference for conservation. Model selection techniques were used to evaluate relationships between Moderate Resolution Imaging Spectroradiometer (MODIS) measures of ecosystem energy and species richness of native land birds using the USGS Breeding Bird Survey (BBS) data. Linear, polynomial, and break point regression techniques were used to evaluate the shape of the relationships with correction for spatial autocorrelation. Spatial analyses were used to determine regions where slopes of the relationship differed. We found that annual gross primary production (GPP) was the strongest correlate of richness (adjusted R2 = 0.55), with a quadratic model being the strongest model. The negative slope of the model was confirmed significantly negative at the highest energy levels. This finding demonstrates that there are three different slopes to the species-energy relationship across the energy gradient of North America: positive, flat, and negative. If energy has a causal relationship with richness, then species-energy theory implies that energy causes richness to increase in low-energy areas, energy has little effect in intermediate-energy areas, and energy depresses richness in the highest-energy areas. This information provides a basis for potential applications for more effective conservation. For example, in low-energy areas, increased nutrients could improve vegetation productivity and increase species richness. In high-energy areas where competitive dominance of vegetation might reduce species richness, vegetation manipulation could increase species richness. These strategies will likely be most effective if tailored to the local energy gradient.
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94
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Doxa A, Bas Y, Paracchini ML, Pointereau P, Terres JM, Jiguet F. Low-intensity agriculture increases farmland bird abundances in France. J Appl Ecol 2010. [DOI: 10.1111/j.1365-2664.2010.01869.x] [Citation(s) in RCA: 102] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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95
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Flesch AD, Swann DE, Turner DS, Powell BF. Herpetofauna of the Rincon Mountains, Arizona. SOUTHWEST NAT 2010. [DOI: 10.1894/pas-14.1] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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96
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97
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Watson DM. Optimizing inventories of diverse sites: insights from Barro Colorado Island birds. Methods Ecol Evol 2010. [DOI: 10.1111/j.2041-210x.2010.00028.x] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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98
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Ruiz-Gutiérrez V, Zipkin EF, Dhondt AA. Occupancy dynamics in a tropical bird community: unexpectedly high forest use by birds classified as non-forest species. J Appl Ecol 2010. [DOI: 10.1111/j.1365-2664.2010.01811.x] [Citation(s) in RCA: 81] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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99
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Termite diversity and abundance across fire-induced habitat variability in a tropical moist savanna (Lamto, Central Côte d'Ivoire). JOURNAL OF TROPICAL ECOLOGY 2010. [DOI: 10.1017/s0266467410000015] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Abstract
Abstract:At Lamto, little is known about animal community responses to habitat variability resulting from fires and the mosaic pattern of the vegetation in general and in particular about that of termites which play key roles in this ecosystem. With a standardized method, data were collected on termites from four habitats differing in their vegetation cover and fire-history: annually burned savanna, savanna woodland, forest island and gallery forest. A range of environmental variables was measured and correlated with species abundances. The number of termite species collected in the savanna woodland was very close to that found in the gallery forest while the forest island was the richest habitat. The species richness of the savanna woodland and forest island seemed partly due to their heterogeneous and transitional vegetation structures and variable food resources. With regard to the fire-history of habitats, Connell's intermediate disturbance hypothesis offers an explanation for differences in the patterns of habitat-specific species richness. Variation in species abundances was significantly correlated with only two environmental variables (soil pH and woody plant species richness). The pH appeared as the most influential factor for fungus-growers while tree invasion in the savanna strongly reduces the abundance of grass-feeding species (e.g. Trinervitermes geminatus). Although not significantly correlated with species abundances, soil carbon showed a positive correlation with the dominant soil-feeder Basidentitermes potens. As for wood-feeders, they were not strongly correlated with woody plant species richness; this fact might be linked to their use for other sources of nourishment. Overall, it appears that habitat variability in the Lamto reserve contributes to the maintenance of different subsets of the termite community.
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100
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White EP, Hurlbert AH. The Combined Influence of the Local Environment and Regional Enrichment on Bird Species Richness. Am Nat 2010; 175:E35-43. [PMID: 20028215 DOI: 10.1086/649578] [Citation(s) in RCA: 58] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Affiliation(s)
- Ethan P White
- Department of Biology and the Ecology Center, Utah State University, Logan, Utah 84322, USA.
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