1001
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Montoya J, Woodward G, Emmerson MC, Solé RV. Press perturbations and indirect effects in real food webs. Ecology 2009; 90:2426-33. [DOI: 10.1890/08-0657.1] [Citation(s) in RCA: 119] [Impact Index Per Article: 7.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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1002
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O'Gorman EJ, Emmerson MC. Perturbations to trophic interactions and the stability of complex food webs. Proc Natl Acad Sci U S A 2009; 106:13393-8. [PMID: 19666606 PMCID: PMC2726361 DOI: 10.1073/pnas.0903682106] [Citation(s) in RCA: 125] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2009] [Indexed: 11/18/2022] Open
Abstract
The pattern of predator-prey interactions is thought to be a key determinant of ecosystem processes and stability. Complex ecological networks are characterized by distributions of interaction strengths that are highly skewed, with many weak and few strong interactors present. Theory suggests that this pattern promotes stability as weak interactors dampen the destabilizing potential of strong interactors. Here, we present an experimental test of this hypothesis and provide empirical evidence that the loss of weak interactors can destabilize communities in nature. We ranked 10 marine consumer species by the strength of their trophic interactions. We removed the strongest and weakest of these interactors from experimental food webs containing >100 species. Extinction of strong interactors produced a dramatic trophic cascade and reduced the temporal stability of key ecosystem process rates, community diversity and resistance to changes in community composition. Loss of weak interactors also proved damaging for our experimental ecosystems, leading to reductions in the temporal and spatial stability of ecosystem process rates, community diversity, and resistance. These results highlight the importance of conserving species to maintain the stabilizing pattern of trophic interactions in nature, even if they are perceived to have weak effects in the system.
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Affiliation(s)
- Eoin J O'Gorman
- Environmental Research Institute, University College Cork, Lee Road, Cork, Ireland.
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1003
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Allesina S, Bodini A, Pascual M. Functional links and robustness in food webs. Philos Trans R Soc Lond B Biol Sci 2009; 364:1701-9. [PMID: 19451121 DOI: 10.1098/rstb.2008.0214] [Citation(s) in RCA: 66] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
The robustness of ecosystems to species losses is a central question in ecology, given the current pace of extinctions and the many species threatened by human impacts, including habitat destruction and climate change. Robustness from the perspective of secondary extinctions has been addressed in the context of food webs to consider the complex network of species interactions that underlie responses to perturbations. In-silico removal experiments have examined the structural properties of food webs that enhance or hamper the robustness of ecosystems to species losses, with a focus on the role of hubs, the most connected species. Here we take a different approach and focus on the role of the connections themselves. We show that trophic links can be divided into functional and redundant based on their contribution to robustness. The analysis of empirical webs shows that hubs are not necessarily the most important species as they may hold many redundant links. Furthermore, the fraction of functional connections is high and constant across systems regardless of size and interconnectedness. The main consequence of this scaling pattern is that ecosystem robustness can be considerably reduced by species extinctions even when these do not result in any secondary extinctions. This introduces the possibility of tipping points in the collapse of ecosystems.
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Affiliation(s)
- Stefano Allesina
- Department of Ecology and Evolutionary Biology, University of Michigan, Natural Science Building, 830 North University, Ann Arbor, MI 48109, USA.
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1004
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McCann KS, Rooney N. The more food webs change, the more they stay the same. Philos Trans R Soc Lond B Biol Sci 2009; 364:1789-801. [PMID: 19451128 DOI: 10.1098/rstb.2008.0273] [Citation(s) in RCA: 106] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
Here, we synthesize a number of recent empirical and theoretical papers to argue that food-web dynamics are characterized by high amounts of spatial and temporal variability and that organisms respond predictably, via behaviour, to these changing conditions. Such behavioural responses on the landscape drive a highly adaptive food-web structure in space and time. Empirical evidence suggests that underlying attributes of food webs are potentially scale-invariant such that food webs are characterized by hump-shaped trophic structures with fast and slow pathways that repeat at different resolutions within the food web. We place these empirical patterns within the context of recent food-web theory to show that adaptable food-web structure confers stability to an assemblage of interacting organisms in a variable world. Finally, we show that recent food-web analyses agree with two of the major predictions of this theory. We argue that the next major frontier in food-web theory and applied food-web ecology must consider the influence of variability on food-web structure.
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Affiliation(s)
- Kevin Shear McCann
- Department of Integrative Biology, University of Guelph, Guelph, Ontario, Canada.
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1005
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Dunne JA, Williams RJ. Cascading extinctions and community collapse in model food webs. Philos Trans R Soc Lond B Biol Sci 2009; 364:1711-23. [PMID: 19451122 DOI: 10.1098/rstb.2008.0219] [Citation(s) in RCA: 150] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
Species loss in ecosystems can lead to secondary extinctions as a result of consumer-resource relationships and other species interactions. We compare levels of secondary extinctions in communities generated by four structural food-web models and a fifth null model in response to sequential primary species removals. We focus on various aspects of food-web structural integrity including robustness, community collapse and threshold periods, and how these features relate to assumptions underlying different models, different species loss sequences and simple measures of diversity and complexity. Hierarchical feeding, a fundamental characteristic of food-web structure, appears to impose a cost in terms of robustness and other aspects of structural integrity. However, exponential-type link distributions, also characteristic of more realistic models, generally confer greater structural robustness than the less skewed link distributions of less realistic models. In most cases for the more realistic models, increased robustness and decreased levels of web collapse are associated with increased diversity, measured as species richness S, and increased complexity, measured as connectance C. These and other results, including a surprising sensitivity of more realistic model food webs to loss of species with few links to other species, are compared with prior work based on empirical food-web data.
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Affiliation(s)
- Jennifer A Dunne
- Santa Fe Institute, 1399 Hyde Park Road, Santa Fe, NM 87501, USA.
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1006
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Covariance between disturbance and soil resources dictates the invasibility of northern fescue prairies. Biol Invasions 2009. [DOI: 10.1007/s10530-009-9551-z] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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1007
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Gross T, Rudolf L, Levin SA, Dieckmann U. Generalized Models Reveal Stabilizing Factors in Food Webs. Science 2009; 325:747-50. [PMID: 19661430 DOI: 10.1126/science.1173536] [Citation(s) in RCA: 170] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Affiliation(s)
- Thilo Gross
- Max Planck Institute for Physics of Complex Systems, Nöthnitzer Strasse 38, 01187 Dresden, Germany.
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1008
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Banasek-Richter C, Bersier LF, Cattin MF, Baltensperger R, Gabriel JP, Merz Y, Ulanowicz RE, Tavares AF, Williams DD, de Ruiter PC, Winemiller KO, Naisbit RE. Complexity in quantitative food webs. Ecology 2009; 90:1470-7. [PMID: 19569361 DOI: 10.1890/08-2207.1] [Citation(s) in RCA: 94] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Food webs depict who eats whom in communities. Ecologists have examined statistical metrics and other properties of food webs, but mainly due to the uneven quality of the data, the results have proved controversial. The qualitative data on which those efforts rested treat trophic interactions as present or absent and disregard potentially huge variation in their magnitude, an approach similar to analyzing traffic without differentiating between highways and side roads. More appropriate data are now available and were used here to analyze the relationship between trophic complexity and diversity in 59 quantitative food webs from seven studies (14-202 species) based on recently developed quantitative descriptors. Our results shed new light on food-web structure. First, webs are much simpler when considered quantitatively, and link density exhibits scale invariance or weak dependence on food-web size. Second, the "constant connectance" hypothesis is not supported: connectance decreases with web size in both qualitative and quantitative data. Complexity has occupied a central role in the discussion of food-web stability, and we explore the implications for this debate. Our findings indicate that larger webs are more richly endowed with the weak trophic interactions that recent theories show to be responsible for food-web stability.
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Affiliation(s)
- Carolin Banasek-Richter
- Department of Biology, Darmstadt University of Technology, Schnittspahnstrasse 10, D-64287 Darmstadt, Germany
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1009
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Evolution of diversity in spatially structured Escherichia coli populations. Appl Environ Microbiol 2009; 75:6047-54. [PMID: 19648364 DOI: 10.1128/aem.00063-09] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
The stochastic Ricker population model was used to investigate the generation and maintenance of genetic diversity in a bacterial population grown in a spatially structured environment. In particular, we showed that Escherichia coli undergoes dramatic genetic diversification when grown as a biofilm. Using a novel biofilm entrapment method, we retrieved 64 clones from each of six different depths of a mature biofilm, and after subculturing for approximately 30 generations, we measured their growth kinetics in three different media. We fit a stochastic Ricker population growth model to the recorded growth curves. The growth kinetics of clonal lineages descendant from cells sampled at different biofilm depths varied as a function of both the depth in the biofilm and the growth medium used. We concluded that differences in the growth dynamics of clones were heritable and arose during adaptive evolution under local conditions in a spatially heterogeneous environment. We postulate that under nutrient-limited conditions, selective sweeps would be protracted and would be insufficient to purge less-fit variants, a phenomenon that would allow the coexistence of genetically distinct clones. These findings contribute to the current understanding of biofilm ecology and complement current hypotheses for the maintenance and generation of microbial diversity in spatially structured environments.
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1010
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Isbell FI, Polley HW, Wilsey BJ. Biodiversity, productivity and the temporal stability of productivity: patterns and processes. Ecol Lett 2009; 12:443-51. [PMID: 19379138 DOI: 10.1111/j.1461-0248.2009.01299.x] [Citation(s) in RCA: 198] [Impact Index Per Article: 13.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Theory predicts that the temporal stability of productivity, measured as the ratio of the mean to the standard deviation of community biomass, increases with species richness and evenness. We used experimental species mixtures of grassland plants to test this hypothesis and identified the mechanisms involved. Additionally, we tested whether biodiversity, productivity and temporal stability were similarly influenced by particular types of species interactions. We found that productivity was less variable among years in plots planted with more species. Temporal stability did not depend on whether the species were planted equally abundant (high evenness) or not (realistically low evenness). Greater richness increased temporal stability by increasing overyielding, asynchrony of species fluctuations and statistical averaging. Species interactions that favoured unproductive species increased both biodiversity and temporal stability. Species interactions that resulted in niche partitioning or facilitation increased both productivity and temporal stability. Thus, species interactions can promote biodiversity and ecosystem services.
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Affiliation(s)
- Forest I Isbell
- Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, IA 50011, USA.
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1011
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Carnicer J, Jordano P, Melián CJ. The temporal dynamics of resource use by frugivorous birds: a network approach. Ecology 2009; 90:1958-70. [PMID: 19694143 DOI: 10.1890/07-1939.1] [Citation(s) in RCA: 109] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Affiliation(s)
- Jofre Carnicer
- Integrative Ecology Group, Estación Biológica de Douiana, Consejo Superior de Investigaciones Cientificas, Isla de La Cartuja, Av. Americo Vespucio s/n Sevilla 41092, Spain.
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1012
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Kartascheff B, Guill C, Drossel B. Positive complexity–stability relations in food web models without foraging adaptation. J Theor Biol 2009; 259:12-23. [DOI: 10.1016/j.jtbi.2009.03.012] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2008] [Revised: 03/09/2009] [Accepted: 03/10/2009] [Indexed: 11/29/2022]
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1013
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Nishikawa J, Kudo T, Sakata S, Benno Y, Sugiyama T. Diversity of mucosa-associated microbiota in active and inactive ulcerative colitis. Scand J Gastroenterol 2009; 44:180-6. [PMID: 18825588 DOI: 10.1080/00365520802433231] [Citation(s) in RCA: 100] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Abstract
OBJECTIVE Recent findings indicate that bacteria play an important role in the pathogenesis of inflammatory bowel disease (IBD). However, the exact role of bacteria in ulcerative colitis (UC) has still to be elucidated. The objective of the study was to investigate the potential differences in the intestinal microbiota between patients with UC and control subjects, using terminal restriction fragment length polymorphism (T-RFLP) analysis of the mucosa-associated microbiota from UC patients and non-IBD controls. MATERIAL AND METHODS Nine active UC patients and 11 non-IBD controls were included in the study. Seven patients with active UC who entered into the inactive phase after antibiotic combination treatment were also classified as patients with inactive UC. Mucosa-associated microbiota was compared between non-IBD controls and UC patients using T-RFLP analysis. Microbiota in both the active and inactive phase was also analyzed in UC patients receiving antibiotic treatment. RESULTS T-RFLP patterns of mucosa-associated microbiota differed between active UC patients and non-IBD controls. Microbial compositions of active UC patients were significantly less diverse. The difference resulted from loss of commensals. From the viewpoint of disease activity before and after antibiotic combination treatment, T-RFLP patterns were also different between the active and inactive phases in the identical patients. Inactive UC patients possessed more diverse microbial compositions. No specific terminal restriction fragments were observed in UC patients. CONCLUSIONS T-RFLP analysis showed that the mucosa-associated microbiota of patients with active UC differed from that of non-IBD controls. Active UC patients possessed significantly fewer diverse microbial compositions.
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Affiliation(s)
- Jun Nishikawa
- Department of Gastroenterology and Hematology, Graduate School of Medicine and Pharmaceutical Sciences, University of Toyama, Japan
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1014
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Bonecker CC, Aoyagui ASM, Santos RM. The impact of impoundment on the rotifer communities in two tropical floodplain environments: interannual pulse variations. BRAZ J BIOL 2009; 69:529-37. [DOI: 10.1590/s1519-69842009000300008] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2008] [Accepted: 03/04/2009] [Indexed: 11/22/2022] Open
Abstract
Hydrological pulses are the main factor regulating the structure of biological communities in floodplains. Reservoirs above this ecosystem change the environment's dynamics and the community's biodiversity. This study evaluated the structure and stability of the rotifer community in response to changes in hydrological pulses after the Porto Primavera impoundment in the Upper Paraná River floodplain. The community was studied in a river and in a floodplain lake downstream of the dam over a four-year period before and after the impoundment. A decrease in species richness and abundance was observed soon after the impoundment, followed by an increase in these attributes and in specific diversity when the hydrometric level of the Paraná River rose and, consequently, increased the connectivity between the floodplain environments. Conochilus coenobasis, Filinia longiseta, Keratella cochlearis, Lecane proiecta and Polyarthra dolichoptera persisted throughout the study and contributed to community stability (the maintenance of rank in species abundance over time), which was high in the floodplain lake, mainly after the impoundment. Reductions in the frequency, intensity and amplitude of potamophase pulses after the impoundment led to the decrease in species richness and the increases in abundance, community stability, and species diversity, which determine community resilience.
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Affiliation(s)
| | | | - RM. Santos
- Universidade Estadual de Maringá, Brazil
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1015
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1016
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Stallings CD. Fishery-independent data reveal negative effect of human population density on Caribbean predatory fish communities. PLoS One 2009; 4:e5333. [PMID: 19421312 PMCID: PMC2672166 DOI: 10.1371/journal.pone.0005333] [Citation(s) in RCA: 63] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2009] [Accepted: 03/25/2009] [Indexed: 11/19/2022] Open
Abstract
BACKGROUND Understanding the current status of predatory fish communities, and the effects fishing has on them, is vitally important information for management. However, data are often insufficient at region-wide scales to assess the effects of extraction in coral reef ecosystems of developing nations. METHODOLOGY/PRINCIPAL FINDINGS Here, I overcome this difficulty by using a publicly accessible, fisheries-independent database to provide a broad scale, comprehensive analysis of human impacts on predatory reef fish communities across the greater Caribbean region. Specifically, this study analyzed presence and diversity of predatory reef fishes over a gradient of human population density. Across the region, as human population density increases, presence of large-bodied fishes declines, and fish communities become dominated by a few smaller-bodied species. CONCLUSIONS/SIGNIFICANCE Complete disappearance of several large-bodied fishes indicates ecological and local extinctions have occurred in some densely populated areas. These findings fill a fundamentally important gap in our knowledge of the ecosystem effects of artisanal fisheries in developing nations, and provide support for multiple approaches to data collection where they are commonly unavailable.
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1017
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1018
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Bruelheide H, Luginbühl U. Peeking at ecosystem stability: making use of a natural disturbance experiment to analyze resistance and resilience. Ecology 2009; 90:1314-25. [DOI: 10.1890/07-2148.1] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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1019
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Increasing community size and connectance can increase stability in competitive communities. J Theor Biol 2009; 258:179-88. [DOI: 10.1016/j.jtbi.2009.01.010] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2008] [Revised: 11/18/2008] [Accepted: 01/15/2009] [Indexed: 11/20/2022]
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1020
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Zavalloni C, Gielen B, De Boeck HJ, Lemmens CMHM, Ceulemans R, Nijs I. Greater impact of extreme drought on photosynthesis of grasslands exposed to a warmer climate in spite of acclimation. PHYSIOLOGIA PLANTARUM 2009; 136:57-72. [PMID: 19374719 DOI: 10.1111/j.1399-3054.2009.01214.x] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
In view of the projected increase in the frequency of extreme events during this century, we investigated the impact of a drought extreme on leaf ecophysiological parameters and carbon isotope composition (delta(13)C) of grassland communities with species richness (S) of one, three or nine species. The communities, grown for 3 years at either ambient air temperatures (ambient T(air)) or ambient T(air) + 3 degrees C (elevated T(air)), were additionally subjected to an imposed drought by withholding water for 24 days. During the previous 3 years equal precipitation was applied in both temperature treatments, thus communities at elevated T(air) had experienced more frequent, mild droughts. However, it was unknown whether this resulted in a higher resistance for facing extreme droughts. At similar soil matric potentials stomatal conductance (g(s)) and transpiration (Tr) were higher at elevated than ambient T(air), indicating acclimation to lower soil water content. Despite the stomatal acclimation observed, plants in elevated T(air) showed a lower resistance to the drought extreme as indicated by their lower photosynthetic rate (A(max)), g(s) and Tr during the entire duration of the drought extreme. Lower values for A(max), Tr and g(s) were also recorded in species at S = 3 as compared with species at S = 1 for both temperature treatments, but no further differences with S = 9 suggesting that stress was not alleviated at higher S-levels. The discrimination of (13)C was poorly correlated with measurements of instantaneous leaf water-use efficiency (A(max)/Tr) and, with this time scale and sampling method, it was not possible to detect any potential change in plant water-use efficiency using leaf delta(13)C.
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Affiliation(s)
- Costanza Zavalloni
- Research Group of Plant and Vegetation Ecology, Department of Biology, University of Antwerp (Campus Drie Eiken), Universiteitsplein 1, BE-2610 Wilrijk, Belgium
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1021
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Parnell JJ, Crowl TA, Weimer BC, Pfrender ME. Biodiversity in microbial communities: system scale patterns and mechanisms. Mol Ecol 2009; 18:1455-62. [PMID: 19298265 DOI: 10.1111/j.1365-294x.2009.04128.x] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
Abstract
The relationship between anthropogenic impact and the maintenance of biodiversity is a fundamental question in ecology. The emphasis on the organizational level of biodiversity responsible for ecosystem processes is shifting from a species-centred focus to include genotypic diversity. The relationship between biodiversity measures at these two scales remains largely unknown. By stratifying anthropogenic effects between scales of biodiversity of bacterial communities, we show a statistically significant difference in diversity based on taxonomic scale. Communities with intermediate species richness show high genotypic diversity while speciose and species-poor communities do not. We propose that in species-poor communities, generally comprising stable yet harsh conditions, physiological tolerance and competitive trade-offs limit both the number of species that occur and the loss of genotypes due to decreases in already constrained fitness. In species-rich communities, natural environmental conditions result in well-defined community structure and resource partitioning. Disturbance of these communities disrupts niche space, resulting in lower genotypic diversity despite the maintenance of species diversity. Our work provides a model to inform future research about relationships between species and genotypic biodiversity based on determining the biodiversity consequences of changing environmental context.
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Affiliation(s)
- J Jacob Parnell
- Department of Biology, Utah State University, Logan, UT84322, USA
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1022
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1023
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Ings TC, Montoya JM, Bascompte J, Blüthgen N, Brown L, Dormann CF, Edwards F, Figueroa D, Jacob U, Jones JI, Lauridsen RB, Ledger ME, Lewis HM, Olesen JM, van Veen FJF, Warren PH, Woodward G. Ecological networks--beyond food webs. J Anim Ecol 2009; 78:253-69. [PMID: 19120606 DOI: 10.1111/j.1365-2656.2008.01460.x] [Citation(s) in RCA: 652] [Impact Index Per Article: 43.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
1. A fundamental goal of ecological network research is to understand how the complexity observed in nature can persist and how this affects ecosystem functioning. This is essential for us to be able to predict, and eventually mitigate, the consequences of increasing environmental perturbations such as habitat loss, climate change, and invasions of exotic species. 2. Ecological networks can be subdivided into three broad types: 'traditional' food webs, mutualistic networks and host-parasitoid networks. There is a recent trend towards cross-comparisons among network types and also to take a more mechanistic, as opposed to phenomenological, perspective. For example, analysis of network configurations, such as compartments, allows us to explore the role of co-evolution in structuring mutualistic networks and host-parasitoid networks, and of body size in food webs. 3. Research into ecological networks has recently undergone a renaissance, leading to the production of a new catalogue of evermore complete, taxonomically resolved, and quantitative data. Novel topological patterns have been unearthed and it is increasingly evident that it is the distribution of interaction strengths and the configuration of complexity, rather than just its magnitude, that governs network stability and structure. 4. Another significant advance is the growing recognition of the importance of individual traits and behaviour: interactions, after all, occur between individuals. The new generation of high-quality networks is now enabling us to move away from describing networks based on species-averaged data and to start exploring patterns based on individuals. Such refinements will enable us to address more general ecological questions relating to foraging theory and the recent metabolic theory of ecology. 5. We conclude by suggesting a number of 'dead ends' and 'fruitful avenues' for future research into ecological networks.
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Affiliation(s)
- Thomas C Ings
- School of Biological and Chemical Sciences, Queen Mary University of London, London E1 4NS, UK
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1024
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Wittebolle L, Marzorati M, Clement L, Balloi A, Daffonchio D, Heylen K, De Vos P, Verstraete W, Boon N. Initial community evenness favours functionality under selective stress. Nature 2009; 458:623-6. [PMID: 19270679 DOI: 10.1038/nature07840] [Citation(s) in RCA: 552] [Impact Index Per Article: 36.8] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2008] [Accepted: 01/28/2009] [Indexed: 01/12/2023]
Abstract
Owing to the present global biodiversity crisis, the biodiversity-stability relationship and the effect of biodiversity on ecosystem functioning have become major topics in ecology. Biodiversity is a complex term that includes taxonomic, functional, spatial and temporal aspects of organismic diversity, with species richness (the number of species) and evenness (the relative abundance of species) considered among the most important measures. With few exceptions (see, for example, ref. 6), the majority of studies of biodiversity-functioning and biodiversity-stability theory have predominantly examined richness. Here we show, using microbial microcosms, that initial community evenness is a key factor in preserving the functional stability of an ecosystem. Using experimental manipulations of both richness and initial evenness in microcosms with denitrifying bacterial communities, we found that the stability of the net ecosystem denitrification in the face of salinity stress was strongly influenced by the initial evenness of the community. Therefore, when communities are highly uneven, or there is extreme dominance by one or a few species, their functioning is less resistant to environmental stress. Further unravelling how evenness influences ecosystem processes in natural and humanized environments constitutes a major future conceptual challenge.
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Affiliation(s)
- Lieven Wittebolle
- LabMET, Laboratory of Microbial Ecology & Technology, Ghent University, B-9000 Ghent, Belgium
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1025
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Schauss K, Focks A, Leininger S, Kotzerke A, Heuer H, Thiele-Bruhn S, Sharma S, Wilke BM, Matthies M, Smalla K, Munch JC, Amelung W, Kaupenjohann M, Schloter M, Schleper C. Dynamics and functional relevance of ammonia-oxidizing archaea in two agricultural soils. Environ Microbiol 2009; 11:446-56. [PMID: 19196275 DOI: 10.1111/j.1462-2920.2008.01783.x] [Citation(s) in RCA: 250] [Impact Index Per Article: 16.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Crucial steps in geochemical cycles are in many cases performed by more than one group of microorganisms, but the significance of this functional redundancy with respect to ecosystem functioning is poorly understood. Ammonia-oxidizing archaea (AOA) and their bacterial counterparts (AOB) are a perfect system to address this question: although performing the same transformation step, they belong to well-separated phylogenetic groups. Using pig manure amended with different concentrations of sulfadiazine (SDZ), an antibiotic that is frequently used in veterinary medicine, it was possible to affect AOB and AOA to different degrees. Addition of manure stimulated growth of AOB in both soils and, interestingly, also growth of AOA was considerably stimulated in one of the soils. The antibiotic treatments decreased the manure effect notably on AOB, whereas AOA were affected to a lower extent. Model calculations concerning the respective proportions of AOA and AOB in ammonia oxidation indicate a substantial contribution of AOA in one of the soils that further increased under the influence of SDZ, hence indicating functional redundancy between AOA and AOB.
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Affiliation(s)
- Kristina Schauss
- Helmholtz Zentrum München, German Research Center for Environmental Health, Institute for Soil Ecology, Neuherberg, Germany
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1026
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Souza GM, Ribeiro RV, Prado CH, Damineli DS, Sato AM, Oliveira MS. Using network connectance and autonomy analyses to uncover patterns of photosynthetic responses in tropical woody species. ECOLOGICAL COMPLEXITY 2009. [DOI: 10.1016/j.ecocom.2008.10.002] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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1027
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Jiang L, Joshi H, Patel S. Predation Alters Relationships between Biodiversity and Temporal Stability. Am Nat 2009; 173:389-99. [DOI: 10.1086/596540] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
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1028
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Powell CR, Boland RP. The effects of stochastic population dynamics on food web structure. J Theor Biol 2009; 257:170-80. [PMID: 19084026 DOI: 10.1016/j.jtbi.2008.11.006] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2008] [Revised: 10/28/2008] [Accepted: 11/01/2008] [Indexed: 10/21/2022]
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1029
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Szwabiński J, Pekalski A. Stability of a model food web. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2009; 79:021915. [PMID: 19391786 DOI: 10.1103/physreve.79.021915] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/04/2008] [Revised: 11/13/2008] [Indexed: 05/27/2023]
Abstract
We investigate numerically the stability of a model food web, introduced by Nunes Amaral and Meyer [Phys. Rev. Lett. 82, 652 (1999)]. The model describes a system of species located in niches at several levels. Upper level species are predating on those from a lower level. We show that the model web is more stable when it is larger, although the number of niches is more important than the number of levels. The food web is self-organizing itself, trying to reach a certain degree of complexity, i.e., number of species and links among them. If the system cannot achieve this state, it will go extinct. We demonstrate that the average number of links per species and the reduced number of species depend in the same way on the number of niches. We also determine how the stability of the food web depends on another parameter of the model, the killing probability. Despite keeping the ratio of the creation and killing probabilities constant, increasing the latter reduces significantly the stability of the model food web. We show that connectance dependence on the number of niches has a power-type character, which agrees with the field data, and that it decreases with the number of species also as a power-type function.
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Affiliation(s)
- Janusz Szwabiński
- Institute of Theoretical Physics, University of Wrocław, pl. M. Borna 9, 50-204 Wrocław, Poland.
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1030
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Effect of a single oral administration of Lactobacillus plantarum DSMZ 8862/8866 before and at the time point of weaning on intestinal microbial communities in piglets. Int J Food Microbiol 2009; 130:227-32. [PMID: 19237219 DOI: 10.1016/j.ijfoodmicro.2009.01.026] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2008] [Revised: 01/18/2009] [Accepted: 01/23/2009] [Indexed: 11/22/2022]
Abstract
The aim of this study was to evaluate whether a single administration of two strains of Lactobacillus plantarum (DSMZ 8862 and 8866) either before or at the time point of weaning can influence the intestinal microbiota of piglets. A total of 176 piglets were allocated into five groups: control (LP0), administration of 5 x 10(9) or 5x10(10) cfu at day 25 of life (LP1, LP2) and administration of 5 x 10(9) or 5 x 10(10) cfu at day 28 of life (LP3, LP4). Piglets were weaned on day 28 of life. On day 25 (LP1, LP2), 28 (LP0, LP3, LP4), 33 (all groups) and 39 (all groups) of life, 10-13 animals of each group were killed and genomic DNA was extracted from small and large intestinal contents. Denaturing gradient gel electrophoresis demonstrated that administration of L. plantarum had a significant effect in GIT microbial communities as revealed by the Simpson's index of diversity and cluster analysis based on the Dice similarity index; this effect was more pronounced in groups LP3 and LP4. A treatment dependent presence of Clostridium glycolicum-like, Lactobacillus sobrius-like, Eubacterium rectale-like and Roseburia faecalis-like phylotypes was observed. The results show that the administration of L. plantarum at the point of weaning can influence gastrointestinal microbiota in weaning piglets which may have positive results on gastrointestinal health.
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1031
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Solimini AG, Ptacnik R, Cardoso AC. Towards holistic assessment of the functioning of ecosystems under the Water Framework Directive. Trends Analyt Chem 2009. [DOI: 10.1016/j.trac.2008.10.015] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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1032
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Temporal Shifts in Microbial Communities in Nonpregnant African-American Women with and without Bacterial Vaginosis. Interdiscip Perspect Infect Dis 2009; 2008:181253. [PMID: 19277101 PMCID: PMC2648625 DOI: 10.1155/2008/181253] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2008] [Accepted: 10/27/2008] [Indexed: 02/06/2023] Open
Abstract
Bacterial vaginosis (BV) has been described as an increase in the number of anaerobic and facultatively anaerobic bacteria relative to lactobacilli in the vaginal tract. Several undesirable consequences of this community shift can include irritation, white discharge, an elevated pH, and increased susceptibility to sexually transmitted infections. While the etiology of the condition remains ill defined, BV has been associated with adverse reproductive and pregnancy outcomes. In order to describe the structure of vaginal communities over time we determined the phylogenetic composition of vaginal communities from seven women sampled at multiple points using 16S rRNA gene sequencing. We found that women with no evidence of BV had communities dominated by lactobacilli that appeared stable over our sampling periods while those with BV had greater diversity and decreased stability overtime. In addition, only Lactobacillus iners was found in BV positive communities.
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1033
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SEILER MEREDITHB, KEELEY ERNESTR. Intraspecific taxonomy and ecology characterize morphological divergence among cutthroat trout (Oncorhynchus clarkii ssp. Richardson) populations. Biol J Linn Soc Lond 2009. [DOI: 10.1111/j.1095-8312.2008.01130.x] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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1034
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1035
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Kools SAE, Boivin MEY, Van Der Wurff AWG, Berg MP, Van Gestel CAM, Van Straalen NM. Assessment of structure and function in metal polluted grasslands using Terrestrial Model Ecosystems. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2009; 72:51-59. [PMID: 18539329 DOI: 10.1016/j.ecoenv.2008.03.016] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/01/2007] [Revised: 03/20/2008] [Accepted: 03/29/2008] [Indexed: 05/26/2023]
Abstract
Ecosystem effects of metal pollution in field situations are hard to predict, since metals occur often in mixtures and links between structural (organisms) and functional endpoints (ecosystem processes) are not always that clear. In grasslands, both structure and functioning was suspected to be affected by a mixture of copper, lead, and zinc. Therefore, the structural and functional variables were studied simultaneously using Terrestrial Model Ecosystems (TMEs). Comparing averages of low- and high-polluted soil, based on total metal concentrations, did not show differences in structural and functional variables. However, nematode community structure (Maturity Index) negatively correlated with metal concentrations. Next to that, multivariate statistics showed that enchytraeid, earthworm and, to lesser extent, nematode diversity decreased with increasing metal concentrations and a lower pH in the soil. Bacterial CFU and nematode biomass were positively related with decomposer activity and nitrate concentrations. Nitrate concentrations were negatively related to ammonium concentrations. Earthworm biomass, CO(2) production and plant yield were not related to metal concentrations. The most metal-sensitive endpoint was enchytraeid biomass. In all analyses, soil pH was a significant factor, indicating direct effects on organisms, or indicating indirect effects by influencing metal availability. In general, structural diversity seemed more positively related to functional endpoints than structural biomass. TMEs proved valuable tools to assess the structure and function in metal polluted field situations. The outcome feeds modeling effort and direct future research.
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Affiliation(s)
- Stefan A E Kools
- Vrije Universiteit, Department of Animal Ecology, De Boelelaan 1085 NL-1081 HV Amsterdam, The Netherlands; Grontmij|AquaSense, Amsterdam, P.O. Box 95125, NL-1090 HC Amsterdam, The Netherlands.
| | - Marie-Elène Y Boivin
- Vrije Universiteit, Department of Animal Ecology, De Boelelaan 1085 NL-1081 HV Amsterdam, The Netherlands; National Institute for Public Health and the Environment (RIVM), P.O. Box 1 NL-3720 BA Bilthoven, The Netherlands
| | - André W G Van Der Wurff
- Wageningen University and Research Center, Laboratory of Nematology, P.O. Box 8123 NL-6700 ES Wageningen, The Netherlands
| | - Matty P Berg
- Vrije Universiteit, Department of Animal Ecology, De Boelelaan 1085 NL-1081 HV Amsterdam, The Netherlands
| | - Cornelis A M Van Gestel
- Vrije Universiteit, Department of Animal Ecology, De Boelelaan 1085 NL-1081 HV Amsterdam, The Netherlands
| | - Nico M Van Straalen
- Vrije Universiteit, Department of Animal Ecology, De Boelelaan 1085 NL-1081 HV Amsterdam, The Netherlands
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1036
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Little AEF, Robinson CJ, Peterson SB, Raffa KF, Handelsman J. Rules of engagement: interspecies interactions that regulate microbial communities. Annu Rev Microbiol 2008; 62:375-401. [PMID: 18544040 DOI: 10.1146/annurev.micro.030608.101423] [Citation(s) in RCA: 252] [Impact Index Per Article: 15.8] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
Microbial communities comprise an interwoven matrix of biological diversity modified by physical and chemical variation over space and time. Although these communities are the major drivers of biosphere processes, relatively little is known about their structure and function, and predictive modeling is limited by a dearth of comprehensive ecological principles that describe microbial community processes. Here we discuss working definitions of central ecological terms that have been used in various fashions in microbial ecology, provide a framework by focusing on different types of interactions within communities, review the status of the interface between evolutionary and ecological study, and highlight important similarities and differences between macro- and microbial ecology. We describe current approaches to study microbial ecology and progress toward predictive modeling.
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Affiliation(s)
- Ainslie E F Little
- Department of Bacteriology, University of Wisconsin, Madison, Wisconsin, 53706, USA.
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1037
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Kools SAE, Berg MP, Boivin MEY, Kuenen FJA, van der Wurff AWG, van Gestel CAM, van Straalen NM. Stress responses investigated; application of zinc and heat to Terrestrial Model Ecosystems from heavy metal polluted grassland. THE SCIENCE OF THE TOTAL ENVIRONMENT 2008; 406:462-468. [PMID: 18701139 DOI: 10.1016/j.scitotenv.2008.06.057] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/27/2008] [Accepted: 06/27/2008] [Indexed: 05/26/2023]
Abstract
This study tested the hypothesis that soils with a deprived biodiversity due to metal pollution are less stable than non-polluted soils, containing a more diverse community. For this, soils were sampled from specific grasslands in the Netherlands that contain elevated heavy metal concentrations (Cu, Pb and Zn). Soils that showed the largest differences in metal concentrations were incubated in the laboratory using Terrestrial Model Ecosystems (TMEs). This approach enabled simultaneous measurement of structural (bacteria, nematodes, enchytraeids, earthworms) and functional parameters (nitrogen leaching, feeding activity, CO2 production, plant growth). The highest polluted soils showed a lower bacterial growth, and decreased enchytraeid and nematode biomass and diversity, hence a deprived community. More nitrate leached from high polluted soils, while all other functional endpoints did not differ. Additional stress application of zinc and heat was used to test the stability. Zinc treatment caused effects only in the higher polluted soils, observed at several moments in time for enchytraeids, CO2 fluxes and plant growth. Heat stress caused a large reduction in enchytraeid and earthworm biomass. Ammonium leaching was decreased by heat treatments in the most polluted soils, while CO2 was increased by heat in less polluted soils. Most effects were seen in the most polluted systems and it was concluded that they seem less stable.
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Affiliation(s)
- Stefan A E Kools
- Vrije Universiteit, Department of Animal Ecology, De Boelelaan 1085 NL-1081 HV Amsterdam, The Netherlands.
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1038
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Crowder LB, Hazen EL, Avissar N, Bjorkland R, Latanich C, Ogburn MB. The Impacts of Fisheries on Marine Ecosystems and the Transition to Ecosystem-Based Management. ANNUAL REVIEW OF ECOLOGY EVOLUTION AND SYSTEMATICS 2008. [DOI: 10.1146/annurev.ecolsys.39.110707.173406] [Citation(s) in RCA: 109] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Larry B. Crowder
- Center for Marine Conservation, Duke University Marine Laboratory, Nicholas School of the Environment, Beaufort, North Carolina 28516;
| | - Elliott L. Hazen
- Center for Marine Conservation, Duke University Marine Laboratory, Nicholas School of the Environment, Beaufort, North Carolina 28516;
| | - Naomi Avissar
- Center for Marine Conservation, Duke University Marine Laboratory, Nicholas School of the Environment, Beaufort, North Carolina 28516;
| | - Rhema Bjorkland
- Center for Marine Conservation, Duke University Marine Laboratory, Nicholas School of the Environment, Beaufort, North Carolina 28516;
| | - Catherine Latanich
- Center for Marine Conservation, Duke University Marine Laboratory, Nicholas School of the Environment, Beaufort, North Carolina 28516;
| | - Matthew B. Ogburn
- Center for Marine Conservation, Duke University Marine Laboratory, Nicholas School of the Environment, Beaufort, North Carolina 28516;
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1039
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García-Charton J, Pérez-Ruzafa A, Marcos C, Claudet J, Badalamenti F, Benedetti-Cecchi L, Falcón J, Milazzo M, Schembri P, Stobart B, Vandeperre F, Brito A, Chemello R, Dimech M, Domenici P, Guala I, Le Diréach L, Maggi E, Planes S. Effectiveness of European Atlanto-Mediterranean MPAs: Do they accomplish the expected effects on populations, communities and ecosystems? J Nat Conserv 2008. [DOI: 10.1016/j.jnc.2008.09.007] [Citation(s) in RCA: 121] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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1040
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Jenkins SR, Moore P, Burrows MT, Garbary DJ, Hawkins SJ, Ingólfsson A, Sebens KP, Snelgrove PVR, Wethey DS, Woodin SA. COMPARATIVE ECOLOGY OF NORTH ATLANTIC SHORES: DO DIFFERENCES IN PLAYERS MATTER FOR PROCESS? Ecology 2008; 89:S3-23. [PMID: 19097481 DOI: 10.1890/07-1155.1] [Citation(s) in RCA: 70] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Affiliation(s)
- Stuart R Jenkins
- School of Ocean Sciences, Bangor University, Menai Bridge, Anglesey LL595AB, United Kingdom.
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1041
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Mougi A, Nishimura K. Enrichment can damp population cycles: a balance of inflexible and flexible interactions. OIKOS 2008. [DOI: 10.1111/j.1600-0706.2008.16688.x] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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1042
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Ebeling A, Klein AM, Schumacher J, Weisser WW, Tscharntke T. How does plant richness affect pollinator richness and temporal stability of flower visits? OIKOS 2008. [DOI: 10.1111/j.1600-0706.2008.16819.x] [Citation(s) in RCA: 273] [Impact Index Per Article: 17.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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1043
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Riedel R, Marinoni R, Martins-Op N. Spatio-Temporal Trends of Insect Communities in Southern Brazil. ACTA ACUST UNITED AC 2008. [DOI: 10.3923/je.2008.369.380] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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1044
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1045
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Botton S, van Heusden M, Parsons JR, Smidt H, van Straalen N. Resilience of Microbial Systems Towards Disturbances. Crit Rev Microbiol 2008; 32:101-12. [PMID: 16850561 DOI: 10.1080/10408410600709933] [Citation(s) in RCA: 70] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
Abstract
In this paper we aim at summarizing the current definitions of resilience in systems ecology with particular attention towards microbial systems. The recent advances of biomolecular techniques have provided scientists with new tools to investigate these systems in greater detail and with higher resolution. Therefore existing concepts and hypotheses have been revisited and discussed with respect to their applicability for ecosystems ruled by microbial processes. This review has also led to some reflections on the suitability of the term "resilience" as a general goal in environmental policies.
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Affiliation(s)
- S Botton
- Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Amsterdam, The Netherlands.
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1046
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Zachow C, Berg C, Müller H, Meincke R, Komon-Zelazowska M, Druzhinina IS, Kubicek CP, Berg G. Fungal diversity in the rhizosphere of endemic plant species of Tenerife (Canary Islands): relationship to vegetation zones and environmental factors. ISME JOURNAL 2008; 3:79-92. [DOI: 10.1038/ismej.2008.87] [Citation(s) in RCA: 70] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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1047
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Kato S, Haruta S, Cui ZJ, Ishii M, Igarashi Y. Network relationships of bacteria in a stable mixed culture. MICROBIAL ECOLOGY 2008; 56:403-411. [PMID: 18196313 DOI: 10.1007/s00248-007-9357-4] [Citation(s) in RCA: 59] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/28/2007] [Revised: 10/17/2007] [Accepted: 12/08/2007] [Indexed: 05/25/2023]
Abstract
We investigated the network relationships of bacteria in a structurally stable mixed culture degrading cellulose. The mixed culture consists of four bacterial strains (a cellulose-degrading anaerobe [strain S], a saccharide-utilizing anaerobe [strain F], a peptide- and acetate-utilizing aerobe [strain 3] and a peptide-, glucose-, and ethanol-utilizing aerobe [strain 5]). Interspecies interactions were examined by analyzing the effects of culture filtrates on the growth of the other strains and by comprehensively analyzing population dynamics in the mixed-culture systems with all possible combinations of the four bacterial strains. The persistence of strain S depends on the effects of strain 5. However, strain 5 is a disadvantaged strain because strain 3 has bacteriocidal activity on strain 5. The extinction of strain 5 is indirectly prevented by strain F that suppresses the growth of strain 3. Although strain F directly has suppressive effects on the growth of strain S, strain F is essential for the persistence of strain S, considering the indirect effects (maintaining strain 5, which is essential for the survival of strain S, by inhibiting strain 3). These indirect relationships form a bacterial network in which all the relationships including suppressive effects were well balanced to maintain the structural stability. In addition to direct metabolite interactions, such kind of indirect relationships could have a great impact on microbial community structure in the natural environment.
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Affiliation(s)
- Souichiro Kato
- Department of Biotechnology, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Yayoi 1-1-1, Tokyo, 113-8657, Japan
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1048
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Abstract
This review covers the 390 novel marine natural products described to date from deep-water (>50 m) marine fauna, with details on the source organism, its depth and country of origin, along with any reported biological activity of the metabolites. Relevant synthetic studies on the deep-sea natural products have also been included.
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Affiliation(s)
- Danielle Skropeta
- School of Chemistry, University of Wollongong, Wollongong, Australia.
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1049
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Keith AM, van der Wal R, Brooker RW, Osler GHR, Chapman SJ, Burslem DFRP, Elston DA. INCREASING LITTER SPECIES RICHNESS REDUCES VARIABILITY IN A TERRESTRIAL DECOMPOSER SYSTEM. Ecology 2008; 89:2657-64. [DOI: 10.1890/07-1364.1] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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1050
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Krushelnycky PD, Gillespie RG. Compositional and functional stability of arthropod communities in the face of ant invasions. ECOLOGICAL APPLICATIONS : A PUBLICATION OF THE ECOLOGICAL SOCIETY OF AMERICA 2008; 18:1547-1562. [PMID: 18767628 DOI: 10.1890/07-1293.1] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
Abstract
There is a general consensus that the diversity of a biotic community can have an influence on its stability, but the strength, ubiquity, and relative importance of this effect is less clear. In the context of biological invasions, diversity has usually been studied in terms of its effect on a community's invasibility, but diversity may also influence stability by affecting the magnitude of compositional or functional changes experienced by a community upon invasion. We examined the impacts of invasive ants on arthropod communities at five natural area sites in the Hawaiian Islands, and assessed whether differences among sites in community diversity and density variables were related to measures of stability. Ant invasion was usually associated with significant changes in overall community composition, as measured by Bray-Curtis distances, particularly among endemic subsets of the communities. Changes in mean species richness were also strong at three of the five sites. Among sites, diversity was negatively related to stability as measured by resistance to overall compositional change, but this effect could not be separated from the strong negative effect of invasive ant density on compositional stability. When compositional stability was measured as proportional change in richness, the best predictor of stability among endemic community subsets was endemic richness, with richer communities losing proportionately more species than species-poor communities. This effect was highly significant even after controlling for differences in invasive ant density and suggested that communities that had already lost many endemic species were resistant to further species loss upon ant invasion, while more intact communities remained vulnerable to species loss. Communities underwent strong but idiosyncratic functional shifts in association with ant invasion, both in terms of trophic structure and total arthropod biomass. There were no apparent relationships, however, between functional stability and community diversity or density measures. Instead, invasive ant density was the best among-site predictor of the magnitude of functional change. Overall, diversity appeared to be a poor predictor of stability in the face of ant invasion in these communities, possibly because any actual diversity effects were overshadowed by community-specific factors and variation in the magnitude of the ant-mediated perturbation.
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Affiliation(s)
- Paul D Krushelnycky
- Department of Environmental Science, Policy and Management, 137 Mulford Hall, University of California, Berkeley, California 94720-3114, USA.
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