Inhibition of shoot branching by new terpenoid plant hormones

Laser microdissection and its application to analyze gene expression in arbuscular mycorrhizal symbiosis

Phosphorus is essential for plant growth, and in many soils phosphorus availability limits crop production. Most plants in natural ecosystems obtain phosphorus via a symbiotic partnership with arbuscular mycorrhizal (AM) fungi. While the significance of these associations is apparent, their molecular basis is poorly understood. Consequently, the potential to harness the mycorrhizal symbiosis to improve phosphorus nutrition in agriculture is not realized. Transcript profiling has recently been used to investigate gene expression changes that accompany development of the AM symbiosis. While these approaches have enabled the identification of AM-symbiosis-associated genes, they have generally involved the use of RNA from whole mycorrhizal roots. Laser microdissection techniques allow the dissection and capture of individual cells from a tissue. RNA can then be isolated from these samples and cell-type specific gene expression information can be obtained. This technology has been applied to obtain cells from plants and more recently to study plant-microbe interactions. The latter techniques, particularly those developed for root-microbe interactions, are of relevance to plant-parasitic weed research. Here, laser microdissection, its use in plant biology and in particular plant-microbe interactions are discussed. An overview of the AM symbiosis is then provided, with a focus on recent advances in understanding development of the arbuscule-cortical cell interface. Finally, the recent applications of laser microdissection for analyses of AM symbiosis are discussed.

Strigolactone acts downstream of auxin to regulate bud outgrowth in pea and Arabidopsis

During the last century, two key hypotheses have been proposed to explain apical dominance in plants: auxin promotes the production of a second messenger that moves up into buds to repress their outgrowth, and auxin saturation in the stem inhibits auxin transport from buds, thereby inhibiting bud outgrowth. The recent discovery of strigolactone as the novel shoot-branching inhibitor allowed us to test its mode of action in relation to these hypotheses. We found that exogenously applied strigolactone inhibited bud outgrowth in pea (Pisum sativum) even when auxin was depleted after decapitation. We also found that strigolactone application reduced branching in Arabidopsis (Arabidopsis thaliana) auxin response mutants, suggesting that auxin may act through strigolactones to facilitate apical dominance. Moreover, strigolactone application to tiny buds of mutant or decapitated pea plants rapidly stopped outgrowth, in contrast to applying N-1-naphthylphthalamic acid (NPA), an auxin transport inhibitor, which significantly slowed growth only after several days. Whereas strigolactone or NPA applied to growing buds reduced bud length, only NPA blocked auxin transport in the bud. Wild-type and strigolactone biosynthesis mutant pea and Arabidopsis shoots were capable of instantly transporting additional amounts of auxin in excess of endogenous levels, contrary to predictions of auxin transport models. These data suggest that strigolactone does not act primarily by affecting auxin transport from buds. Rather, the primary repressor of bud outgrowth appears to be the auxin-dependent production of strigolactones.

Parasitic angiosperms, semagenesis and general strategies for plant-plant signaling in the rhizosphere

BACKGROUND

In addition to their roles in eukaryotic defense and development, reactive oxygen species (ROS) have recently been identified as critical for host attachment by the parasitic angiosperms. In a process known as semagenesis, ROS generated at the root tip of Striga asiatica (L.) Kuntze (Scrophulariaceae) function together with host peroxidases to oxidize monolignols at the host root surface. As a result, para-benzoquinone products accumulate as both necessary and sufficient components for inducing development of the host attachment organ, the haustorium. This event constitutes the critical vegetative/pathogenic transition in the parasite.

RESULTS

New evidence is presented that semagenesis occurs broadly in plant-plant signaling. Eudicotyledenous seedlings are more sensitive to the xenognostic benzoquinones than monocots, but general root development, including root elongation, root hair initiation and root hair growth, is impacted in both clades. Specific inhibitors of haustorial development in S. asiatica also inhibit benzoquinone-mediated root development in the non-parasites. These results suggest a common mechanism for benzoquinone perception.

CONCLUSION

Semagenesis enriches our understanding of the mechanisms available for small-molecule underground information exchange among plants. Critical differences in this process, as used by parasitic plants, are beginning to emerge and point towards new strategies for managing parasitic angiosperms in agricultural settings.

DWARF27, an iron-containing protein required for the biosynthesis of strigolactones, regulates rice tiller bud outgrowth

Tillering in rice (Oryza sativa) is one of the most important agronomic traits that determine grain yields. Previous studies on rice tillering mutants have shown that the outgrowth of tiller buds in rice is regulated by a carotenoid-derived MAX/RMS/D (more axillary branching) pathway, which may be conserved in higher plants. Strigolactones, a group of terpenoid lactones, have been recently identified as products of the MAX/RMS/D pathway that inhibits axillary bud outgrowth. We report here the molecular genetic characterization of d27, a classic rice mutant exhibiting increased tillers and reduced plant height. D27 encodes a novel iron-containing protein that localizes in chloroplasts and is expressed mainly in vascular cells of shoots and roots. The phenotype of d27 is correlated with enhanced polar auxin transport. The phenotypes of the d27 d10 double mutant are similar to those of d10, a mutant defective in the ortholog of MAX4/RMS1 in rice. In addition, 2'-epi-5-deoxystrigol, an identified strigolactone in root exudates of rice seedlings, was undetectable in d27, and the phenotypes of d27 could be rescued by supplementation with GR24, a synthetic strigolactone analog. Our results demonstrate that D27 is involved in the MAX/RMS/D pathway, in which D27 acts as a new member participating in the biosynthesis of strigolactones.

Structure and function of natural and synthetic signalling molecules in parasitic weed germination

The structures of naturally occurring germination stimulants for seeds of the parasitic weeds Striga spp. and Orobanche spp. are described. The bioactiphore in this strigolactone family of stimulants is deduced from a structure-activity relationship and shown to reside in the CD part of the stimulant molecule. A molecular mechanism for the initial stages of seed germination is proposed. The influence of stereochemistry on the stimulant activity is significant. Combining this molecular information leads to a model for the design of synthetic strigolactones. Nijmegen-1 is a typical example of a highly active, newly designed synthetic stimulant. The occurrence of natural stimulants not belonging to the strigolactone family, such as cotylenin and parthenolide, is briefly described. The biosynthesis of natural strigolactones from beta-carotene is analysed in terms of isolated and predicted stimulants. This scheme will be helpful in the search for new strigolactones from root exudates. Protein fishing experiments to isolate and characterise the receptor protein using biotin-labelled GR 24 are described. A receptor protein of 60 kD was identified by this method. Nijmegen-1 has been tested as a suicidal germination agent in field trials on tobacco infested by Orobanche ramosa L. The preliminary results are highly rewarding. Finally, some future challenges in synthesis are described. These include synthesising new natural and synthetic stimulants and establishing the molecular connection between strigolactones as germination stimulants, as the branching factor for arbuscular mycorrhizal fungi and as an inhibitor of shoot branching.

The genetics of barley low-tillering mutants: absent lower laterals (als)

Barley (Hordeum vulgare L.) carrying the recessive mutation absent lower laterals (als) exhibits few tillers and irregular inflorescence development. To gain an increased understanding of the genetic control of tillering in barley, we conducted morphological, genetic, and transcriptome analysis of the als mutant. Axillary buds for primary tillers, but not for secondary tillers, developed in als plants. Double mutant combinations of als with one low-tillering and four high-tillering mutants resulted in a tillering phenotype similar to als, indicating that als was epistatic to these tillering genes. However, double mutant combinations of als with another low-tillering mutant, intermedium-b, reduced tiller numbers, indicating there were at least two genetic pathways regulating tillering in barley. Next, we used simple sequence repeat markers to map the Als gene on the long arm of barley chromosome 3H, Bin 11. Finally, the Affymetrix Barley1 GeneChip was used to identify differentially accumulated transcripts in als compared to wild-type. Forty percent of the transcripts with twofold or greater accumulation in als tissues corresponded to stress and defense response genes. This finding suggested that a tillering pathway may modulate the stress response.

Strigolactones: ecological significance and use as a target for parasitic plant control

Parasitic weeds cause severe damage to important agricultural crops. Although some promising control methods against these parasitic plants have been developed, new strategies continue to be relevant in integrated approaches. The life cycle for root parasitic weeds is intimately associated with their host and is a suitable target for such new control strategies, particularly when directed at the early stages of the host-parasite interaction. Here, the authors focus on knowledge of the germination stimulants-strigolactones-for the root parasitic plants Striga and Orobanche spp. and discuss their biosynthetic origin, ecological significance and physiological and biochemical regulation. In addition, the existing and possible new control strategies that are based on this knowledge, and that could lead to more efficient control methods against these root parasitic weeds, are reviewed.

Strigolactones: structures and biological activities

Strigolactones released from plant roots induce seed germination of root parasitic weeds, witchweeds (Striga spp.) and broomrapes (Orobanche spp.), and hyphal branching of symbiotic arbuscular mycorrhizal (AM) fungi. In addition to these functions in the rhizosphere, strigolactones have recently been shown to be a novel class of plant hormones regulating shoot outgrowth. The natural strigolactones identified so far have the common C-D ring moiety, which is thought to be the essential structure for exhibiting biological activity. The introduction of substitutions on the A-B ring moiety of 5-deoxystrigol, the basic strigolactone, affords various strigolactones, e.g. hydroxylation on C-4, C-5 and C-9 leads to orobanchol, strigol and sorgomol respectively. Then, acetylation and probably other derivatisations of these hydroxy-strigolactones would occur. Although the C-2'-(R) stereochemistry was thought to be an important structural feature for potent germination stimulation activity, 2'-epi-strigolactones were found in root exudates of tobacco, rice, pea and other plant species, indicating that at least some plants produce both epimers.

Thinking outside the F-box: novel ligands for novel receptors

The importance of regulated proteolysis in the physiology and development of plants is highlighted by the large number of genes dedicated to proteasome-dependent protein degradation. Within the SCF class of E3 ubiquitin ligases are more than 700 F-box proteins that act as recognition modules to specifically target their dedicated substrates for ubiquitylation. This review focuses on very recent studies indicating that some F-box proteins function as phytohormone or light receptors, which directly perceive signals and facilitate specific target-protein degradation to regulate downstream pathways. If this new connection between ligand-regulated proteolysis and signaling proves to be more extensive, an entirely new way of understanding the control of signal transduction is in the offing.

Potential implications for epigenetic regulation of carotenoid biosynthesis during root and shoot development

Major regulators of carotenoid biosynthesis have remained rather elusive even though the flux through the branch in the carotenoid pathway can affect plant development in response to environmental stimuli, such as light. Our recent investigations demonstrated that the production of the most abundant carotenoid in plants, lutein, is regulated by carotenoid isomerase (CRTISO) activity at a rate-limiting step of this branch point in carotenoid biosynthesis. CRTISO is required to isomerase cis-carotenes, such as tetra-cis-lycopene to all-trans-lycopene. In order to maintain permissive transcriptional regulation of CRTISO, active marks of histone lysine methylation are targeted to the promoter region by the SET DOMAIN GROUP8 (SDG8) methyltransferase. Mutants of SDG8 (ccr1 ) and CRTISO (ccr2 ) show an increase in shoot branching, which may be partly explained by limiting synthesis of the carotenoid-derived branching hormone, strigolactone. In this addendum, we demonstrate new functions for SDG8 in mediating branching in Arabidopsis roots. The roles that carotenoids and SDG8 play in root and shoot development begins to open new doors for investigating the regulation of carotenoid composition in response to epigenetic events.

David and Goliath: what can the tiny weed Arabidopsis teach us to improve biomass production in crops?

In the next decades, the world market for plant-derived products is expected to expand exponentially. Not only do we rely on plants to feed the growing world population, but plants will also play a pivotal role in providing a significant part of our increasing energy demands. Whereas in the 1960s the green revolution contributed to increase plant productivity, it is expected that biotechnological advances will further boost biomass production and plant yield. To do this effectively, it will be necessary to understand how the molecular machinery that determines yield parameters operates. Although of no direct economic significance, the model plant Arabidopsis can be used to find genes and regulatory networks controlling biomass production, which, in turn, can be applied for further growth improvement in other species including cereals.

Roles for auxin, cytokinin, and strigolactone in regulating shoot branching

Many processes have been described in the control of shoot branching. Apical dominance is defined as the control exerted by the shoot tip on the outgrowth of axillary buds, whereas correlative inhibition includes the suppression of growth by other growing buds or shoots. The level, signaling, and/or flow of the plant hormone auxin in stems and buds is thought to be involved in these processes. In addition, RAMOSUS (RMS) branching genes in pea (Pisum sativum) control the synthesis and perception of a long-distance inhibitory branching signal produced in the stem and roots, a strigolactone or product. Auxin treatment affects the expression of RMS genes, but it is unclear whether the RMS network can regulate branching independently of auxin. Here, we explore whether apical dominance and correlative inhibition show independent or additive effects in rms mutant plants. Bud outgrowth and branch lengths are enhanced in decapitated and stem-girdled rms mutants compared with intact control plants. This may relate to an RMS-independent induction of axillary bud outgrowth by these treatments. Correlative inhibition was also apparent in rms mutant plants, again indicating an RMS-independent component. Treatments giving reductions in RMS1 and RMS5 gene expression, auxin transport, and auxin level in the main stem were not always sufficient to promote bud outgrowth. We suggest that this may relate to a failure to induce the expression of cytokinin biosynthesis genes, which always correlated with bud outgrowth in our treatments. We present a new model that accounts for apical dominance, correlative inhibition, RMS gene action, and auxin and cytokinin and their interactions in controlling the progression of buds through different control points from dormancy to sustained growth.

The phytoene synthase gene family in the Grasses: subfunctionalization provides tissue-specific control of carotenogenesis

Carotenoids are a complex class of isoprenoid pigments playing diverse roles in plants and providing nutritional value. Metabolic engineering of the biosynthetic pathway has been of interest to specifically address global vitamin A deficiency by breeding cereal crop staples in the Poaceae (Grass family) for elevated levels of provitamin A carotenoids. However, there remain open questions about the rate-controlling steps that limit predictability of metabolic engineering in plants, whether by transgenic or nontransgenic means. We decided to focus on the first committed biosynthetic step which is mediated by phytoene synthase. Our studies revealed that in the Grasses, PSY is encoded by three genes. Maize transcript profiling, together with carotenoid and ABA analysis, revealed that the three PSY copies have subfunctionalized and provide the Grasses with a fine tine control of carotenogenesis in response to various developmental and external cues. Promoter analysis supports subfunctionalization; cis-element analysis of maize PSY1 alleles and comparison with Grass orthologs suggests that man's selection of yellow maize endosperm has occurred at the expense of a change of gene regulation in photosynthetic tissue as compared to the progenitor white endosperm PSY1 allele.

The lateral root initiation index: an integrative measure of primordium formation

BACKGROUND AND AIMS

Lateral root initiation is an essential and continuous process in the formation of root systems; therefore, its quantitative analysis is indispensable. In this study a new measure of lateral root initiation is proposed and analysed, namely the lateral root initiation index (I(LRI)), which defines how many lateral roots and/or primordia are formed along a parent-root portion corresponding to 100 cortical cells in a file.

METHODS

For data collection, a commonly used root clearing procedure was employed, and a new simple root clearing procedure is also proposed. The I(LRI) was determined as 100dl, where d is the density of lateral root initiation events (number mm(-1)) and l is the average fully elongated cortical cell length (mm).

KEY RESULTS

Analyses of different Arabidopsis thaliana genotypes and of a crop plant, tomato (Solanum lycopersicum), showed that I(LRI) is a more precise parameter than others commonly used as it normalizes root growth for variations in cell length. Lateral root primordium density varied in the A. thaliana accessions Col, Ler, Ws, and C24; however, in all accessions except Ws, I(LRI) was similar under the same growth conditions. The nitrogen/carbon ratio in the growth medium did not change the lateral root primordium density but did affect I(LRI). The I(LRI) was also modified in a number of auxin-related mutants, revealing new root branching phenotypes in some of these mutants. The rate of lateral root initiation increased with Arabidopsis seedling age; however, I(LRI) was not changed in plants between 8 and 14 d post-germination.

CONCLUSIONS

The I(LRI) allows for a more precise comparison of lateral root initiation under different growth conditions, treatments, genotypes and plant species than other comparable methods.

Role of plant hormones in plant defence responses

Plant hormones play important roles in regulating developmental processes and signaling networks involved in plant responses to a wide range of biotic and abiotic stresses. Significant progress has been made in identifying the key components and understanding the role of salicylic acid (SA), jasmonates (JA) and ethylene (ET) in plant responses to biotic stresses. Recent studies indicate that other hormones such as abscisic acid (ABA), auxin, gibberellic acid (GA), cytokinin (CK), brassinosteroids (BR) and peptide hormones are also implicated in plant defence signaling pathways but their role in plant defence is less well studied. Here, we review recent advances made in understanding the role of these hormones in modulating plant defence responses against various diseases and pests.

Auxin-cytokinin interactions in the control of shoot branching

In many plant species, the intact main shoot apex grows predominantly and axillary bud outgrowth is inhibited. This phenomenon is called apical dominance, and has been analyzed for over 70 years. Decapitation of the shoot apex releases the axillary buds from their dormancy and they begin to grow out. Auxin derived from an intact shoot apex suppresses axillary bud outgrowth, whereas cytokinin induced by decapitation of the shoot apex stimulates axillary bud outgrowth. Here we describe the molecular mechanisms of the interactions between auxin and cytokinin in the control of shoot branching.

Adaptation of a seedling micro-grafting technique to the study of long-distance signaling in flowering of Arabidopsis thaliana

Long-distance signaling via phloem tissues is an important mechanism for inter-organ communication. Such communication allows plants to integrate environmental information into physiological and developmental responses. Grafting has provided persuasive evidence of long-distance signaling involved in various processes, including flowering, tuberization, nodulation, shoot branching, post-transcriptional gene silencing, and disease resistance. A micro-grafting technique to generate two-shoot grafts is available for young seedlings of Arabidopsis thaliana and was adapted for use in the study of flowering. Histological analysis using transgenic plants expressing beta-glucuronidase (GUS) in phloem tissues showed that phloem continuity between a stock and a scion was established between 7 and 10 days after grafting. Experiments using tracer dyes and enhanced green fluorescent protein (EGFP) showed that the phloem connection was functional and capable of effecting macromolecular transmission. Successful grafts can be obtained at high frequency (10-30%) and selected after 2-3 weeks of post-surgery growth. This method was applied successfully to the study of flowering, one of the important events regulated by long-distance signaling. This grafting technique will facilitate the study of the long-distance action of genes involved in various aspects of growth and development, and in transport of signal molecules.

2008: Signaling breakthroughs of the year

This year's signaling breakthroughs extended from protein crystals to cells and subcellular structures to whole genomes. Nominations included research on synapses in brains and in B cells; the evolution and regulation of signaling networks; the identification of a new class of plant hormones; insights into the causes and treatments of disease, such as cancer and schizophrenia; and a possible way to stay in shape while avoiding exercise.

Self-organisation at the whole-plant level: a modelling study

Within-plant light and nutrient environments are spatially and temporally heterogeneous. The development of different parts of a plant is highly coordinated, which enables the efficient capture and use of resources in such heterogeneous environments. The physiological mechanisms underlying the correlative control of distantly located plant tissues and organs are still not fully understood. In this study, a mathematical model based on a self-organisation mechanism for resource allocation mediated by polar auxin transport is proposed to explain the origin of correlative effects among shoot branches. In the model, the shoot system of an individual plant is treated as a collection of relatively independent modular subunits competing for root-derived resources. The allocation of root-derived resources to different parts of the shoot is determined by their relative vascular contacts with the root system. The development of the vascular network is specified by the polar transport of auxin produced by various parts of the shoot in response to their immediate internal and external environments. The simulation results show that, by altering the amount of auxin they release individually in response to the local environment and modifying their relative vascular contact with the root system, subunits of a shoot are able to coordinate without a central controller and self-organise into functional and structural patterns such as light foraging and correlative dominance. This modelling study suggests that morphological dynamics at the whole-plant level can be understood as the sum of all modular responses to their local environments. The concept of self-organisation holds great promise for an in-depth understanding of the organisational laws that generate overall plant structure and functions.

Unravelling the regulatory mechanisms that modulate the MEP pathway in higher plants

The methyl-D-erythritol 4-phosphate pathway is responsible for the biosynthesis of a substantial number of natural compounds of biological and biotechnological importance. In recent years, this pathway has become an obvious target to develop new herbicides and antimicrobial drugs. In addition, the production of a variety of compounds of medical and agricultural interest may be possible through the genetic manipulation of this pathway. To this end, a complete understanding of the molecular mechanisms that regulate this pathway is of tremendous importance. Recent data have accumulated that show some of the multiple mechanisms that regulate the methyl-D-erythritol 4-phosphate pathway in plants. In this review we will describe some of these and discuss their implications. It has been demonstrated that 1-deoxy-D-xylulose-5-phosphate synthase (DXS), the first enzyme of this route, plays a major role in the overall regulation of the pathway. A small gene family codes for this enzyme in most of the plants which have been analysed so far, and the members of these gene families belong to different phylogenetic groups. Each of these genes exhibits a distinct expression pattern, suggesting unique functions. One of the most interesting regulatory mechanisms recently described for this pathway is the post-transcriptional regulation of the level of DXS and DXR proteins. In the case of DXS, this regulation appears conserved among plants, supporting its importance. The evidence accumulated suggests that this regulation might link the activity of this pathway with the plant's physiological conditions and the metabolic demand for the final products of this route.

Fabacyl acetate, a germination stimulant for root parasitic plants from Pisum sativum

A germination stimulant, fabacyl acetate, was purified from root exudates of pea (Pisum sativum L.) and its structure was determined as ent-2'-epi-4a,8a-epoxyorobanchyl acetate [(3aR,4R,4aR,8bS,E)-4a,8a-epoxy-8,8-dimethyl-3-(((R)-4-methyl-5-oxo-2,5-dihydrofuran-2-yloxy)methylene)-2-oxo-3,3a,4,5,6,7,8,8b-decahydro-2H-indeno[1,2-b]furan-4-yl acetate], by 1D and 2D NMR spectroscopic, ESI- and EI-MS spectrometric, X-ray crystallographic analyses, and by comparing the (1)H NMR spectroscopic data and relative retention times (RR(t)) in LC-MS and GC-MS with those of synthetic standards prepared from (+)-orobanchol and (+)-2'-epiorobanchol. The (1)H NMR spectroscopic data and RR(t) of fabacyl acetate were identical with those of an isomer prepared from (+)-2'-epiorobanchol except for the opposite sign in CD spectra. This is the first natural ent-strigolactone containing an epoxide group. Fabacyl acetate was previously detected in root exudates of other Fabaceae plants including faba bean (Vicia faba L.) and alfalfa (Medicago sativa L.).

Multiple layers of incompatibility to the parasitic witchweed, Striga hermonthica

* Witchweeds (Striga spp.) are major agricultural pests that infest important crops in sub-Saharan Africa. Striga hermonthica parasitizes gramineous plants including sorghum, maize and rice, but not dicots. To understand host recognition mechanisms of S. hermonthica, we investigated its interaction with nonhost dicots including Arabidopsis, cowpea, Lotus japonicus and Phtheirospermum japonicum, a hemiparasite. * Striga hermonthica seeds were pretreated with strigol, a germination stimulant, and allowed to germinate next to a potential host root. We characterized the histological phenotype of the interactions. Moreover, we monitored the infection of a host rice and the nonhost P. japonicum by S. hermonthica using time-lapse photography. * All nonhost dicots tested did not support S. hermonthica shoot growth beyond the six leaf-pair stage; however, the arrest of parasite development occurred at different stages. Striga hermonthica haustoria were able to reach the steles of Arabidopsis and cowpea, while L. japonicus blocked S. hermonthica infection in the root cortex. Striga hermonthica often failed to penetrate P. japonicum roots. * Our analysis indicates that there are at least four types of incompatible interaction to S. hermonthica. Combinations of these different incompatibility mechanisms contribute to the total resistance to S. hermonthica.

Role of mitochondria in the response of arbuscular mycorrhizal fungi to strigolactones

The plant signals strigolactones activate seed germination of the parasitic weeds (Striga and Orobanche), growth of arbuscular mycorrhizal (AM) fungi and have recently been described as a new class of plant hormones that inhibit shoot branching. In AM fungi, the synthetic strigolactone analogue GR24 rapidly stimulates mitochondrial metabolism (within minutes) and biogenesis (within one hour). New gene expression, more active nuclear division and cell proliferation occur later (within days). By using pharmacological approaches to inhibit the mitochondrial ATP synthesis, various steps of the respiratory chain and the mitochondrial protein translation, we further describe the mechanisms underlying the mitochondrial response to GR24. We show with SHAM and KCN inhibition treatments that the respiratory chain of Gigaspora rosea is branched and includes an alternative oxydase. The two electron transports can be used for GR24 activation of hyphal branching but only the alternative one is used for spore germination. By using the inhibitors Oligomycin, Rotenone, Antimycine A and KCN, we show that indirect (proton pumping) and direct inhibition of ATP synthase does not completely abolish the activation of hyphal branching by GR24. However, hyphal branching was totally inhibited with the suppression of mitochondrial biogenesis, confirming the essential role played by mitochondria to amplify the strigolactone response of AM fungi.

Selective inhibition of carotenoid cleavage dioxygenases: phenotypic effects on shoot branching

Members of the carotenoid cleavage dioxygenase family catalyze the oxidative cleavage of carotenoids at various chain positions, leading to the formation of a wide range of apocarotenoid signaling molecules. To explore the functions of this diverse enzyme family, we have used a chemical genetic approach to design selective inhibitors for different classes of carotenoid cleavage dioxygenase. A set of 18 arylalkyl-hydroxamic acids was synthesized in which the distance between an iron-chelating hydroxamic acid and an aromatic ring was varied; these compounds were screened as inhibitors of four different enzyme classes, either in vitro or in vivo. Potent inhibitors were found that selectively inhibited enzymes that cleave carotenoids at the 9,10 position; 50% inhibition was achieved at submicromolar concentrations. Application of certain inhibitors at 100 μm to Arabidopsis node explants or whole plants led to increased shoot branching, consistent with inhibition of 9,10-cleavage.