Ectomycorrhizal fungal communities in young forest stands regenerating after clearcut logging

Large-scale parallel 454 sequencing reveals host ecological group specificity of arbuscular mycorrhizal fungi in a boreonemoral forest

* Knowledge of the diversity of arbuscular mycorrhizal fungi (AMF) in natural ecosystems is a major bottleneck in mycorrhizal ecology. Here, we aimed to apply 454 sequencing--providing a new level of descriptive power--to assess the AMF diversity in a boreonemoral forest. * 454 sequencing reads of the small subunit ribosomal RNA (SSU rRNA) gene of Glomeromycota were assigned to sequence groups by blast searches against a custom-made annotated sequence database. * We detected 47 AMF taxa in the roots of 10 plant species in a 10 x 10 m plot, which is almost the same as the number of plant species in the whole studied forest. There was a significant difference between AMF communities in the roots of forest specialist plant species and in the roots of habitat generalist plant species. Forest plant species hosted 22 specialist AMF taxa, and the generalist plants shared all but one AMF taxon with forest plants, including globally distributed generalist fungi. These AMF taxa that have been globally recorded only in forest ecosystems were significantly over-represented in the roots of forest plant species. * Our findings suggest that partner specificity in AM symbiosis may occur at the level of ecological groups, rather than at the species level, of both plant and fungal partners.

Bacterial, archaeal and eukaryal community structures throughout soil horizons of harvested and naturally disturbed forest stands

Disturbances caused by timber harvesting have critical long-term effects on the forest soil microbiota and alter fundamental ecosystem services provided by these communities. This study assessed the effects of organic matter removal and soil compaction on microbial community structures in different soil horizons 13 years after timber harvesting at the long-term soil productivity site at Skulow Lake, British Columbia. A harvested stand was compared with an unmanaged forest stand. Ribosomal intergenic spacer profiles of bacteria, archaea and eukarya indicated significantly different community structures in the upper three soil horizons of the two stands, with differences decreasing with depth. Large-scale sequencing of the ribosomal intergenic spacers coupled to small-subunit ribosomal RNA genes allowed taxonomic identification of major microbial phylotypes affected by harvesting or varying among soil horizons. Actinobacteria and Gemmatimonadetes were the predominant phylotypes in the bacterial profiles, with the relative abundance of these groups highest in the unmanaged stand, particularly in the deeper soil horizons. Predominant eukaryal phylotypes were mainly assigned to known mycorrhizal and saprotrophic species of Basidiomycetes and Ascomycetes. Harvesting affected Basidiomycetes to a minor degree but had stronger effects on some Ascomycetes. Archaeal profiles had low diversity with only a few predominant crenarchaeal phylotypes whose abundance appeared to increase with depth. Detection of these effects 13 years after harvesting may indicate a long-term change in processes mediated by the microbial community with important consequences for forest productivity. These effects warrant more comprehensive investigation of the effects of harvesting on the structure of forest soil microbial communities and the functional consequences.

Influence of soil nutrients on ectomycorrhizal communities in a chronosequence of mixed temperate forests

Many factors associated with forests are collectively responsible for controlling ectomycorrhizal (ECM) fungal community structure, including plant species composition, forest structure, stand age, and soil nutrients. The objective of this study was to examine relationships among ECM fungal community measures, local soil nutrients, and stand age along a chronosequence of mixed forest stands that were similar in vegetation composition and site quality. Six combinations of age class (5-, 26-, 65-, and 100-year-old) and stand initiation type (wildfire and clearcut) were replicated on four sites, each representing critical seral stages of stand development in Interior Cedar-Hemlock (ICH) forests of southern British Columbia. We found significant relationships between ECM fungal diversity and both available and organic P; available P was also positively correlated with the abundance of two ECM taxa (Rhizopogon vinicolor group and Cenoccocum geophilum). By contrast, ECM fungal diversity varied unpredictably with total and mineralizable N or C to N ratio. We also found that soil C, N, available P, and forest floor depth did not exhibit strong patterns across stand ages. Overall, ECM fungal community structure was more strongly influenced by stand age than specific soil nutrients, but better correlations with soil nutrients may occur at broader spatial scales covering a wider range of site qualities.

Assessing the effect of disturbances on ectomycorrhiza diversity

Ectomycorrhiza (ECM) communities can be described on a species level or on a larger scale at an ecosystem level. Here we show that the species level approach of successional processes in ECM communities is not appropriate for understanding the diversity patterns of ECM communities at contaminated sites. An ecosystem based approach improves predictability since different biotic and abiotic factors are included. However, it still does not take into account the hierarchical structure of the ecosystem. We suggest that diversity patterns of ECMs communities in forests can best be investigated at three levels. This hypothetical approach for investigation can be tested at sites of secondary succession in areas contaminated with metals. Once the diversity patterns are appropriately described by a hierarchical ecosystem approach, to the species level is used to explain these patterns by populational and ecotoxicological mechanisms.

Mycorrhizal colonisation of mountain birch (Betula pubescens ssp. czerepanovii) along three environmental gradients: does life in harsh environments alter plant-fungal relationships?

Environmental stress affects ectomycorrhizal communities (ECM), but it is not known how general the detected ECM responses are. We investigated ECM fungi on roots of mountain birch, Betula pubescens subsp. czerepanovii (Orlova) Hämet-Ahti, along three environmental gradients, two natural (altitude, seashore) and one human-induced (pollution), within the Kola Peninsula, NW Russia. Chlorophyll fluorescence of birch leaves indicated no environmental stress even in the conditions that were presumed most stressful in terms of abiotic environment, where the biomass and population density of birches were strongly reduced. Although neither overall ECM colonisation nor root fungal biomass showed stress-related patterns, colonisation by Cenococcum geophilum tended to decrease with abiotic stress. ECM morphotype diversity declined with abiotic stress, and along altitudinal gradient this decline was related to an increase in proportion of morphotypes with high fungal biomass. Polycormic birches had higher ECM colonisation than monocormic birches at high stress sites only. ECM morphotype diversity increased with foliar nitrogen concentration at low stress sites, but not at high stress sites. Birches with higher chlorophyll fluorescence had lower chitin concentration in their roots (indicating lower proportion of fungal structures) at high stress sites only. Our results suggest that at high stress sites (1) mechanical shelter created by polycormic trees may favour ECM fungi and (2) mountain birches maintain lower ECM diversity than at low stress sites.

Temporal changes in the ectomycorrhizal community in two soil horizons of a temperate oak forest

The species structure of an ectomycorrhizal (ECM) community was assessed monthly for 15 months in the two horizons (A1 and A2) of an oak temperate forest in northeastern France. Ectomycorrhizal species were identified each month by internal transcribed spacer sequencing. Seventy-five fungal symbionts were identified. The community was dominated by Tomentellaceae, Russulaceae, Cortinariaceae, and Boletales. Four species are abundant in the study site: Lactarius quietus, Tomentella sublilacina, Cenococcum geophilum, and Russula sp1. The relative abundance of each species varied depending on the soil horizon and over time. Some species, such as L. quietus, were present in the A1 and A2 horizons. C. geophilum was located particularly in the A2 horizon, whereas T. sublilacina was more abundant in A1. Some species, such as Clavulina sp., were detected in winter, while T. sublilacina and L. quietus were present all year long. Our results support the hypothesis that a rapid turnover of species composition of the ECM community occurs over the course of a month. The spatial and temporal unequal distribution of ECM species could be explained by their ecological preferences, driven by such factors as root longevity, competition for resources, and resistance to environmental variability.

Reducing airborne ectomycorrhizal fungi and growing non-mycorrhizal loblolly pine (Pinus taeda L.) seedlings in a greenhouse

Atmospheric spores of ectomycorrhizal (ECM) fungi are a potential source of contamination when mycorrhizal studies are performed in the greenhouse, and techniques for minimizing such contamination have rarely been tested. We grew loblolly pine (Pinus taeda L.) from seed in a greenhouse and inside a high-efficiency particulate air-filtered chamber (HFC) constructed within the same greenhouse. Seedlings were germinated in seven different sand- or soil-based and artificially based growth media. Seedlings grown in the HFC had fewer mycorrhizal short roots than those grown in the open greenhouse atmosphere. Furthermore, the proportion of seedlings from the HFC that were completely non-mycorrhizal was higher than that of seedlings from the greenhouse atmosphere. Seedlings grown in sterilized, artificially based growth media (>50% peat moss, vermiculite, and/or perlite by volume) had fewer mycorrhizal short roots than those grown in sand- or soil-based media. The HFC described here can minimize undesirable ECM colonization of host seedlings in greenhouse bioassays. In addition, the number of non-mycorrhizal seedlings can be maximized when the HFC is used in combination with artificially based growth media.

High diversity of arbuscular mycorrhizal fungi in a boreal herb-rich coniferous forest

* Here, the diversity of arbuscular mycorrhizal (AM) fungi was determined in a boreal herb-rich coniferous forest in relation to environmental variables. * Root samples of five plant species (Fragaria vesca, Galeobdolon luteum, Hepatica nobilis, Oxalis acetosella and Trifolium pratense) were analysed from stands differing in age and forest management intensity. * Thirty-four Glomeromycota taxa (small-subunit ribosomal RNA gene (SSU rDNA) sequence groups) were detected from 90 root samples (911 clones), including eight new taxa. Sequence groups related to Glomus intraradices were most common (MO-G3 and MO-G13). Samples of H. nobilis were colonized by more AM fungal taxa (3.68 +/- 0.31) than those of O. acetosella (2.69 +/- 0.34), but did not differ significantly in this respect from those of F. vesca (3.15 +/- 0.38). Effects of forest management, host plant species (except above) or season on the number or composition of fungal taxa in root samples were not detected, and neither were they explained by environmental variables (vegetation, soil and light conditions). * This is the most taxon-rich habitat described to date in terms of root-colonizing Glomeromycota. The data demonstrate the importance of temperate coniferous forests as habitats for AM fungi and plants. Lack of obvious fungal community patterns suggests more complex effects of biotic and abiotic factors, and possibly no adverse effect of common forest management practices on AM fungal diversity.

The co-occurrence of ectomycorrhizal, arbuscular mycorrhizal, and dark septate fungi in seedlings of four members of the Pinaceae

Although roots of species in the Pinaceae are usually colonized by ectomycorrhizal (EM) fungi, there are increasing reports of the presence of arbuscular mycorrhizal (AM) and dark septate endophytic (DSE) fungi in these species. The objective of this study was to determine the colonization patterns in seedlings of three Pinus (pine) species (Pinus banksiana, Pinus strobus, Pinus contorta) and Picea glauca x Picea engelmannii (hybrid spruce) grown in soil collected from a disturbed forest site. Seedlings of all three pine species and hybrid spruce became colonized by EM, AM, and DSE fungi. The dominant EM morphotype belonged to the E-strain category; limited colonization by a Tuber sp. was found on roots of Pinus strobus and an unknown morphotype (cf. Suillus-Rhizopogon group) with thick, cottony white mycelium was present on short roots of all species. The three fungal categories tended to occupy different niches in a single root system. No correlation was found between the percent root colonized by EM and percent colonization by either AM or DSE, although there was a positive correlation between percent root length colonized by AM and DSE. Hyphae and vesicles were the only AM intracellular structures found in roots of all species; arbuscules were not observed in any roots.

Is transplanting an effective means of preserving vegetation?

Transplantation to new locations is used widely to propagate horticultural and agricultural species but is also promoted as a means of relocating whole communities that stand in the way of development. It may be used as well to move vegetation from the field for experimentation under controlled conditions. Transplantation has not in the past been considered a reliable means of conserving threatened species or reproducing functional characteristics of natural communities, and has been regarded by many as highly ineffective. However, its potential must now be re-examined because of the many recent transplant attempts as well as advances in related fields. Recent trials illustrate that individual endangered species are still particularly difficult to transplant and displaced multi-species sods are almost always changed in the process. Exact reconstruction of communities from individual components is next to impossible because the full complement of species, including critical microbial components, is almost never known. Owing to a limited understanding of phenology, reproduction, functional roles, and interrelationships among constituent microbes, cryptogams, vascular plants, and fauna, transplants may be placed into sites with both biological and physical insufficiencies. Genetic diversity may be lost or, if genotypes from diverse sources are mixed, outbreeding depression may result. Recent advances in soil science, microbial ecology, and population genetics have in some cases improved the effectiveness of transplantation, but new insights mainly permit a fuller appreciation of the causes of failure. Home-site advantage has been demonstrated, and habitat protection appears to be the best and perhaps only reliable way of preserving intact natural communities and rare species. Furthermore, experimentation with vegetational mats under controlled conditions may have little relevance to natural ecosystems.

Growth and mycorrhizal community structure of Pinus sylvestris seedlings following the addition of forest litter

We report the effects of pine and oak litter on species composition and diversity of mycorrhizal fungi colonizing 2-year-old Pinus sylvestris L. seedlings grown in a bare-root nursery in Lithuania. A layer of pine or oak litter was placed on the surface of the nursery bed soil to mimic natural litter cover. Oak litter amendment appeared to be most favorable for seedling survival, with a 73% survival rate, in contrast to the untreated mineral bed soil (44%). The concentrations of total N, P, K, Ca, and Mg were higher in oak growth medium than in pine growth medium. Relative to the control (pH 6.1), the pH was lower in pine growth medium (5.8) and higher in oak growth medium (6.3). There were also twofold and threefold increases in the C content of growth medium with the addition of pine and oak litter, respectively. Among seven mycorrhizal morphotypes, eight different mycorrhizal taxa were identified: Suillus luteus, Suillus variegatus, Wilcoxina mikolae, a Tuber sp., a Tomentella sp., Cenococcum geophilum, Amphinema byssoides, and one unidentified ectomycorrhizal symbiont. Forest litter addition affected the relative abundance of mycorrhizal symbionts more than their overall representation. This was more pronounced for pine litter than for oak litter, with 40% and 25% increases in the abundance of suilloid mycorrhizae, respectively. Our findings provide preliminary evidence that changes in the supply of organic matter through litter manipulation may have far-reaching effects on the chemistry of soil, thus influencing the growth and survival of Scots pine seedlings and their mycorrhizal communities.

Ectomycorrhizal fungi: exploring the mycelial frontier

Ectomycorrhizal (ECM) fungi form mutualistic symbioses with many tree species and are regarded as key organisms in nutrient and carbon cycles in forest ecosystems. Our appreciation of their roles in these processes is hampered by a lack of understanding of their soil-borne mycelial systems. These mycelia represent the vegetative thalli of ECM fungi that link carbon-yielding tree roots with soil nutrients, yet we remain largely ignorant of their distribution, dynamics and activities in forest soils. In this review we consider information derived from investigations of fruiting bodies, ECM root tips and laboratory-based microcosm studies, and conclude that these provide only limited insights into soil-borne ECM mycelial communities. Recent advances in understanding soil-borne mycelia of ECM fungi have arisen from the combined use of molecular technologies and novel field experimentation. These approaches have the potential to provide unprecedented insights into the functioning of ECM mycelia at the ecosystem level, particularly in the context of land-use changes and global climate change.

Ectomycorrhizal colonization of naturally regenerating Pinus sylvestris L. seedlings growing in different micro-habitats in boreal forest

We investigated the species richness and composition of ectomycorrhizal (EM) fungi colonizing Pinus sylvestris L. seedlings naturally regenerating in boreal forest, in three different microhabitats: on forest ground, on decaying stumps, and within moss layer on erratic boulders. We tested the hypothesis that habitat differences would affect the composition of the EM community of regenerating pine seedlings. In total, 16 EM species were detected, from which none occurred on seedlings growing in all three microhabitats. Piloderma croceum and Cenococcum geophilum were common for seedlings growing in forest ground and on boulders, while Tricholoma aestuans and Suillus luteus were shared between seedlings growing on forest ground and decaying stumps. EM species richness and composition were strikingly different between seedlings regenerating in different microhabitats. Results are discussed as a function of dispersal and niche differentiation of EM fungi.

Ectomycorrhiza communities of red oak (Quercus rubra L.) of different age in the Lusatian lignite mining district, East Germany

Ectomycorrhizal (ECM) communities were assessed on a 720 m(2) plot along a chronosequence of red oak (Quercus rubra) stands on a forest reclamation site with disturbed soil in the lignite mining area of Lower Lusatia (Brandenburg, Germany). Adjacent to the mining area, a red oak reference stand with undisturbed soil was investigated reflecting mycorrhiza diversity of the intact landscape. Aboveground, sporocarp surveys were carried out during the fruiting season in a 2-week interval in the years 2002 and 2003. Belowground, ECM morphotypes were identified by comparing sequences of the internal transcribed spacer regions from nuclear rDNA with sequences from the GenBank database. Fifteen ECM fungal species were identified as sporocarps and 61 belowground as determined by morphological/anatomical and molecular analysis of their ectomycorrhizas. The number of ECM morphotypes increased with stand age along the chronosequence. However, the number of morphotypes was lower in stands with disturbed soil than with undisturbed soil. All stands showed site-specific ECM communities with low similarity between the chronosequence stands. The dominant ECM species in nearly all stands was Cenococcum geophilum, which reached an abundance approaching 80% in the 21-year-old chronosequence stand. Colonization rate of red oak was high (>95%) at all stands besides the youngest chronosequence stand where colonization rate was only 15%. This supports our idea that artificial inoculation with site-adapted mycorrhizal fungi would enhance colonization rate of red oak and thus plant growth and survival in the first years after outplanting.

Petroleum hydrocarbon contamination in boreal forest soils: a mycorrhizal ecosystems perspective

The importance of developing multi-disciplinary approaches to solving problems relating to anthropogenic pollution is now clearly appreciated by the scientific community, and this is especially evident in boreal ecosystems exposed to escalating threats of petroleum hydrocarbon (PHC) contamination through expanded natural resource extraction activities. This review aims to synthesize information regarding the fate and behaviour of PHCs in boreal forest soils in both ecological and sustainable management contexts. From this, we hope to evaluate potential management strategies, identify gaps in knowledge and guide future research. Our central premise is that mycorrhizal systems, the ubiquitous root symbiotic fungi and associated food-web communities, occupy the structural and functional interface between decomposition and primary production in northern forest ecosystems (i.e. underpin survival and productivity of the ecosystem as a whole), and, as such, are an appropriate focal point for such a synthesis. We provide pertinent basic information about mycorrhizas, followed by insights into the ecology of ecto- and ericoid mycorrhizal systems. Next, we review the fate and behaviour of PHCs in forest soils, with an emphasis on interactions with mycorrhizal fungi and associated bacteria. Finally, we summarize implications for ecosystem management. Although we have gained tremendous insights into understanding linkages between ecosystem functions and the various aspects of mycorrhizal diversity, very little is known regarding rhizosphere communities in PHC-contaminated soils. This makes it difficult to translate ecological knowledge into environmental management strategies. Further research is required to determine which fungal symbionts are likely to survive and compete in various ecosystems, whether certain fungal - plant associations gain in ecological importance following contamination events, and how PHC contamination may interfere with processes of nutrient acquisition and exchange and metabolic processes. Research is also needed to assess whether the metabolic capacity for intrinsic decomposition exists in these ecosystems, taking into account ecological variables such as presence of other organisms (and their involvement in syntrophic biodegradation), bioavailability and toxicity of mixtures of PHCs, and physical changes to the soil environment.

Ectomycorrhizal fungal succession in mixed temperate forests

Ectomycorrhizal (ECM) fungal communities of Douglas-fir (Pseudotsuga menziesii) and paper birch (Betula papyrifera) were studied along a chronosequence of forest development after stand-replacing disturbance. Previous studies of ECM succession did not use molecular techniques for fungal identification or lacked replication, and none examined different host species. Four age classes of mixed forests were sampled: 5-, 26-, 65-, and 100-yr-old, including wildfire-origin stands from all four classes and stands of clearcut origin from the youngest two classes. Morphotyping and DNA sequences were used to identify fungi on ECM root tips. ECM fungal diversities were lower in 5-yr-old than in older stands on Douglas-fir, but were similar among age classes on paper birch. Host-specific fungi dominated in 5-yr-old stands, but host generalists were dominant in the oldest two age classes. ECM fungal community compositions were similar in 65- and 100-yr-old stands but differed among all other pairs of age classes. Within the age range studied, site-level ECM fungal diversity reached a plateau by the 26-yr-old age class, while community composition stabilized by the 65-yr-old class. Simple categories such as 'early stage', 'multi stage', and 'late stage' were insufficient to describe fungal species' successional patterns. Rather, ECM fungal succession may be best described in the context of stand development.

Wide geographical and ecological distribution of nitrogen and carbon gains from fungi in pyroloids and monotropoids (Ericaceae) and in orchids

* Stable isotope abundance analyses recently revealed that some European green orchids and pyroloids (Ericaceae) are partially myco-heterotrophic, exploiting mycorrhizal fungi for organic carbon and nitrogen. Here we investigate related species to assess their nutritional mode across various forest and climate types in Germany and California. * C- and N-isotope signatures of five green pyroloids, three green orchids and several obligate myco-heterotrophic species (including the putatively fully myco-heterotrophic Pyrola aphylla) were analysed to quantify the green plants' nutrient gain from their fungal partners and to investigate the constancy of enrichment in (13)C and (15)N of fully myco-heterotrophic plants from diverse taxa and locations relative to neighbouring autotrophic plants. * All green pyroloid and one orchid species showed significant (15)N enrichment, confirming incorporation of fungi-derived N compounds while heterotrophic C gain was detected only under low irradiance in Orthilia secunda. Pyrola aphylla had an isotope signature equivalent to those of fully myco-heterotrophic plants. * It is demonstrated that primarily N gain from mycorrhizal fungi occurred in all taxonomic groups investigated across a wide range of geographical and ecological contexts. The (13)C and (15)N enrichment of obligate myco-heterotrophic plants relative to accompanying autotrophic plants turned out as a fairly constant parameter.

Forest stand age and the occurrence of chanterelle (Cantharellus) species in Oregon's central Cascade Mountains

We describe watershed-scale habitat associations of three Cantharellus species with respect to stand age. During the 1998 autumn fruiting season we collected chanterelle sporocarps from 18 forest stands in and adjacent to the H.J. Andrews experimental forest in the central Cascade Mountains of Oregon. Sampled stands represented two age categories: old growth ( approximately 350+ y) and 40-60-y-old second growth naturally regenerated from clear-cut harvest. Old growth and second growth stands were spatially paired to reduce the chance of spurious habitat relationships caused by unmeasured correlated variables. We found stand age to be a good predictor of the distribution of C. subalbidus and C. formosus, but only marginally useful for predicting the occurrence of C. cascadensis. The odds that a randomly located chanterelle sporocarp will be C. subalbidus, compared to other chanterelles, are 3-23.5 times higher in old growth than in second growth. Alternatively, there is only a 4-38% chance that a randomly located sporocarp will be C. formosus in old growth. C. cascadensis was found to be uncommon throughout the study area and showed no significant habitat associations. The abundance of C. cascadensis increased substantially with decreasing elevation indicating that landscape features other than stand age may be more useful in predicting its occurrence.

Stand age and sampling year effect on the fungal fruit body community in Pinus pinaster forests in central Spain

The process of fungal community succession in forests is still insufficiently known, especially in Mediterranean ecosystems. To reveal successional patterns, we studied changes in aboveground sporocarp composition in managed Pinus pinaster Ait. forests across a stand age chronosequence from 5 to more than 90 years in Soria province (Central Spain). We evaluated the effect of yearly conditions and stand age on species richness, composition, and trophic groups. All aboveground sporocarps were collected and identified in 21 plots, each measuring 150 m2, placed in a random stand age-stratified survey. Sampling was performed weekly in the autumn during 6 years (1997–2002). The effect of year and stand age on species richness was analysed using repeated measures analysis of variance and change in composition. Changes in community composition were evaluated via canonical correspondence analysis (CCA). The response of different trophic groups was analyzed using ANOVA with age as a fixed factor. Fungal community richness increased with stand age. This increase was related to the rise in humicolous saprotroph and mycorrhizal species. The presence of parasitic and lignicolous fungi was always very low, probably as a result of forest management. Yearly conditions exerted a stronger effect than stand age on aboveground sporocarp community richness and composition.

Effects of clearcut logging and tree species composition on the diversity and community composition of epigeous fruit bodies formed by ectomycorrhizal fungi

The objective of this study was to examine the effects of stand age and tree species composition on the abundance, diversity, and community composition of epigeous fruit bodies formed by ectomycorrhizal (ECM) fungi in the Interior Cedar Hemlock zone of British Columbia. Fruit bodies were collected and identified in May, June, August, September, and October of 1996, 1997, 1998, and 1999 from transects located in new (5 year old) plantations and mature (75–125 year old) wild forests composed of relatively pure Betula papyrifera Marsh. (paper birch), relatively pure Pseudotsuga menziesii var. glauca (Beissn.) Franco (interior Douglas-fir), and mixtures of the two tree species. A total of 187 fungal taxa were collected during the study, of which 185 occurred in mature forests and only 17 occurred in the plantations. Thirty-four taxa were unique to mature predominantly birch forests, 35 were unique to mature predominantly Douglas-fir forests, 17 were unique to mixed mature forests, and 68 taxa were found in all three mature forest types. The abundance of fruit bodies in mature forests varied widely among sampling years and generally increased with annual precipitation. ECM species richness differed between stand ages but not among forest compositions in both plantations and mature forests. Lactarius glyciosmus , Hygrophorus eburneus var. eburneus , and Cortinarius armillatus were more abundant in mature birch than mature Douglas-fir forests. Lactarius torminosus , Leccinum scabrum var. scabrum , and Rozites caperatus were also found predominantly in mature birch and mixed forests, whereas Gomphidius subroseus was more abundant in Douglas-fir forests than in birch and mixed mature forests. Russula brevipes was also found predominantly in mature Douglas-fir and mixed forests. Our results indicate that clearcutting has a profound effect on abundance and composition of ECM fruit bodies, and that changes in forest tree species composition may lead to shifts in ECM fungal community composition.

Vertical distribution of an ectomycorrhizal community in upper soil horizons of a young Norway spruce (Picea abies [L.] Karst.) stand of the Bavarian Limestone Alps

The vertical niche differentiation of genera of ectomycorrhiza (ECM) was assessed in a 17-year-old Norway spruce (Picea abies [L.] Karst.) plantation on a mountainous dolomitic site (1,050 m above sea level) of the Bavarian Limestone Alps. We determined ECM anatomotypes, recorded the abundance of corresponding ECM root tips and classified them into groups of ECM exploration types, which refer to the organisation and the extent of their extramatrical mycelia. The abundance of ECM was highest in the organic soil layers, compared to the mineral soil horizon. The ordination of the ECM communities and of the exploration types revealed segregation related to soil horizon properties. While Cenococcum geophilum preferred the organic soil layers, Lactarius spp., Tomentella spp. and Craterellus tubaeformis were generally most abundant in the mineral soil horizons. Cenococcum geophilum was the predominant species, possibly based on enhanced competitiveness under the prevailing site conditions. The short-distance exploration types (e.g. C. geophilum) preferentially colonised the organic soil layer, whereas the contact types (e.g. most of the Tomentella spp., C. tubaeformis) together with medium-distance types (e.g. Amphinema byssoides) were primarily associated with the underlying A-horizons. Therefore, the soil horizons had an important effect on the distribution of ECM and on their community structure. The spatial niche differentiation of ECM genera and exploration types is discussed in regard to specific physico-chemical properties of soil horizon and the assumed ecophysiological strategies of ECM.

Soil modification by different tree species influences the extent of seedling ectomycorrhizal infection

Established vegetation can facilitate the ectomycorrhizal infection of seedlings, but it is not known whether this interaction is limited by the phylogenetic relatedness of trees and seedlings. We use a series of bioassay experiments to test whether soil modification by different ectomycorrhizal tree species causes different levels of seedling infection, whether the extent of seedling infection is a function of the relatedness of tree and seedling, and whether the effect of trees on seedlings is mediated by biotic or abiotic soil factors. We found that soils from under different tree species do vary in their mycorrhizal infectiveness. However, this variation is not related to the genetic relatedness of trees and seedlings but instead, appears to be an attribute of the overstory species, irrespective of seedling species, mediated through a suite of humus- and base-cation-related abiotic effects on soils. Modification of abiotic soil properties by overstory trees should be considered as an important factor in the effect of different overstory trees on the extent of seedling mycorrhizal infection.

Drought effects on fine-root and ectomycorrhizal-root biomass in managed Pinus oaxacana Mirov stands in Oaxaca, Mexico

The effects of a severe drought on fine-root and ectomycorrhizal biomass were investigated in a forest ecosystem dominated by Pinus oaxacana located in Oaxaca, Mexico. Root cores were collected during both the wet and dry seasons of 1998 and 1999 from three sites subjected to different forest management treatments in 1990 and assessed for total fine-root biomass and ectomycorrhizal-root biomass. Additionally, a bioassay experiment with P. oaxacana seedlings was conducted to assess the ectomycorrhizal inoculum potential of the soil for each of the three stands. Results indicated that biomasses of both fine roots and ectomycorrhizal roots were reduced by almost 60% in the drought year compared to the nondrought year. There were no significant differences in ectomycorrhizal and fine-root biomass between the wet and dry seasons. Further, the proportion of total root biomass consisting of ectomycorrhizal roots did not vary between years or seasons. These results suggest that both total fine-root biomass and ectomycorrhizal-root biomass are strongly affected by severe drought in these high-elevation tropical pine forests, and that these responses outweigh seasonal effects. Forest management practices in these tropical pine forests should consider the effects of drought on the capacity of P. oaxacana to maintain sufficient levels of ectomycorrhizae especially when there is a potential for synergistic interactions between multiple disturbances that may lead to more severe stress in the host plant and subsequent reductions in ectomycorrhizal colonization.

Ectomycorrhizal community structure varies among Norway spruce (Picea abies) clones

In northern boreal forests, the diversity of ectomycorrhizal (ECM) species is much greater than that of their host trees. This field study investigated the role of individual trees in shaping the ECM community. We compared ECM communities of eight Norway spruce (Picea abies) clones planted in a clear-cut area in 1994 with a randomized block design. In 2003, the ECM fungi were identified from randomly sampled root tips using denaturing gradient gel electrophoresis (DGGE) and rDNA internal transcribed spacer (ITS) sequence similarity. ECM diversity varied among clone groups, showing twofold growth differences. Moreover, according to detrended correspondence analysis (DCA), ECM community structure varied not only among but also within slow-growing or fast-growing clones. Results suggest that ECM diversity and community structure are related to the growth rate or size of the host. A direct or indirect influence of host genotype was also observed, and we therefore suggest that individual trees are partly responsible for the high diversity and patchy distribution of ECM communities in boreal forests.

Does proximity to mature trees influence ectomycorrhizal fungus communities of Douglas-fir seedlings?

The influence of mature trees on colonization of Douglas-fir (Pseudotsuga menziesii) seedlings by ectomycorrhizal fungi (EMF) is not well understood. Here, the EMF communities of seedlings planted near and far from trees are compared with each other, with EMF of seedlings potted in field soils and with EMF of mature trees. Seedlings were planted within 6 m, or beyond 16 m, from residual Douglas-fir trees in recently harvested green-tree retention units in Washington State, USA, or potted in soils gathered from near each residual tree. Mature tree roots were sampled by partly excavating the root system. The EMF communities were assessed by polymerase chain reaction-restriction fragment length polymorphism and sequence analysis of ribosomal RNA genes. Seedlings near trees had higher species richness and diversity of EMF communities compared with seedlings far from trees. The EMF communities of seedlings near trees were more similar to those of mature trees, while seedlings far from trees were more similar to glasshouse seedlings. By enhancing the EMF diversity of seedlings, residual trees may maintain or accelerate the re-establishment of mycorrhizal communities associated with mature forests.

Evidence for mutualist limitation: the impacts of conspecific density on the mycorrhizal inoculum potential of woodland soils

The ability of seedlings to establish can depend on the availability of appropriate mycorrhizal fungal inoculum. The possibility that mycorrhizal mutualists limit the distribution of seedlings may depend on the prevalence of the plant hosts that form the same type of mycorrhizal association as the target seedling species and thus provide inoculum. We tested this hypothesis by measuring ectomycorrhizal (EM) fine root distribution and conducting an EM inoculum potential bioassay along a gradient of EM host density in a pinyon-juniper woodland where pinyon is the only EM fungal host while juniper and other plant species are hosts for arbuscular mycorrhizal (AM) fungi. We found that pinyon fine roots were significantly less abundant than juniper roots both in areas dominated aboveground by juniper and in areas where pinyon and juniper were co-dominant. Pinyon seedlings establishing in pinyon-juniper zones are thus more likely to encounter AM than EM fungi. Our bioassay confirmed this result. Pinyon seedlings were six times less likely to be colonized by EM fungi when grown in soil from juniper-dominated zones than in soil from either pinyon-juniper or pinyon zones. Levels of EM colonization were also reduced in seedlings grown in juniper-zone soil. Preliminary analyses indicate that EM community composition varied among sites. These results are important because recent droughts have caused massive mortality of mature pinyons resulting in a shift towards juniper-dominated stands. Lack of EM inoculum in these stands could reduce the ability of pinyon seedlings to re-colonize sites of high pinyon mortality, leading to long-term vegetation shifts.

Thuja plicata exclusion in ectomycorrhiza-dominated forests: testing the role of inoculum potential of arbuscular mycorrhizal fungi

The ability of trees dependent on arbuscular mycorrhizal (AM) fungi to establish in ectomycorrhizal forests is unknown. On northern Vancouver Island, Canada, there are sharp boundaries between mixed red cedar (Thuja plicata)-hemlock (Tsuga heterophylla) (CH) stands, and stands of hemlock and amabilis fir (Abies amabilis) (HA). We tested differences in AM colonization of red cedar between ectomycorrhiza-dominated (HA) stands and stands containing red cedar (CH), across a range of light levels. We used a soil bioassay approach to determine whether there was sufficient AM fungal inoculum in the HA tree stands to colonize red cedar seedlings. Seeds of hemlock and red cedar were sown in forest floor samples collected from the two types of forests, and shade treatments ranging from < 1 to 53% of full sunlight were imposed. After 6 months, seedling survival and root and shoot biomass were quantified, and red cedar seedlings were sampled for AM fungal colonization. Hemlock survival and growth did not differ between soil types, suggesting there was no substrate-associated limitation to its establishment in either forest type. Red cedar colonization by AM fungi was significantly correlated with light levels in CH soils but arbuscular mycorrhizas were absent in roots of red cedar seedlings grown in HA soil. Red cedar survival and relative growth rate were significantly greater in the CH than in HA soil; higher growth was due primarily to greater shoot growth in CH soils at high light levels. The low soil inoculum potential for red cedar in ectomycorrhiza-dominated stands may account for the virtual exclusion of red cedar seedlings from these forests.

Diversity and fruiting patterns of ectomycorrhizal and saprobic fungi in an old-growth Mediterranean forest dominated by Quercus ilex L

We collected and mapped epigeous fruitbodies of both ectomycorrhizal (ECM) and saprobic fungi in an old-growth Quercus ilex L. Mediterranean forest within a permanent transect of 6400 m2 over three consecutive fruiting seasons. Out of 5382 fruitbodies, a total of 234 species were found, including 166 and 68 ECM and saprobic taxa, respectively. Both communities were mainly composed of rare species. Two genera, Russula and Cortinarius, accounted for 34.4% of ECM fruitbodies and 50% of species diversity. The three most abundant ECM species were Laccaria laccata (Scop.: Fr.) Berk. & Broome, Inocybe tigrina R. Heim, and Lactarius chrysorrheus Fr. The fruiting ECM community encompassed a few Mediterranean species and numerous broad host range temperate species. We also analysed the fruiting patterns in relation to forest structure, host composition, and natural canopy gaps. The results showed (i) a significant correlation of species richness to tree density, (ii) a richness decrease as the number of vegetation layers increases, and (iii) a preferential fruiting of some species near Q. ilex or Arbutus unedo L. Another noteworthy feature was that richness and production were greatly enhanced in canopy gaps. Selective fruiting was also observed among species. These results highlight the importance of forest structure and large woody debris for fungal conservation.Key words: ECM community, saprophytic fungi, holm oak, macromycete fruiting patterns, canopy gaps, fungal conservation.

Diversity of ectomycorrhizae on experimentally planted Douglas-fir seedlings in variable retention forestry sites on southern Vancouver Island

Studies were done on Vancouver Island of ectomycorrhizal (EM) communities at four distances (5–45 m) from isolated forest patches in three second-growth (SG) and three old-growth (OG) Douglas-fir sites subject to variable retention harvesting. We tested the hypothesis that retention of mature trees enhances colonization and diversity of EM fungi on seedlings planted in adjacent areas. In total 41 EM morphotypes were described, with mean diversity of 3.47 morphotypes and root colonization of 62% per seedling. Overall, root colonization declined with distance (72% at 5 m vs. 52% at 45 m), as did EM diversity (4.7 at 5 m vs. 2.9 at 45 m). For individual sites, the distance effect was significant for root colonization at four sites and for EM diversity at three to four sites. This suggests that variable retention is important for the recovery of ectomycorrhizal biota in harvested sites. Seedling root colonization was significantly lower in SG sites than in OG sites. Though EM diversity did not differ with stand age, OG sites had potentially more total (34) and unique (14) EM morphotypes than did SG sites (total 27, unique 7). Differences with stand age might be related to the relative abilities of EM fungi to disperse to regenerating second-growth forests.Key words: variable retention silviculture, ectomycorrhizae ecology, Douglas-fir seedlings, old growth, second-growth forests.

Exploring functional definitions of mycorrhizas: Are mycorrhizas always mutualisms?

Mycorrhizas are considered to be classic mutualisms. Here, we define mutualism as a reciprocal increase in fitness of the symbionts, and we review the evidence for mycorrhizal mutualism at the community, whole-plant, and cellular scales. It is difficult to use results of most mycorrhizal studies because (i) fungal contribution to nutrient uptake is not accurately estimated, (ii) increased growth is not necessarily correlated with increased plant fecundity or survival, especially in communities, and (iii) benefits that occur only at certain times of year, or under specific extreme conditions, may not be detected. To produce the nonmycorrhizal controls required to study mutualism in the field, soil microflora and fauna must be severely perturbed; therefore, it is virtually impossible to evaluate effects of mycorrhizas on plant fitness under realistic conditions. Using the evidence available, we conclude that mycorrhizas can occupy various positions along the continuum from parasitism to mutualism, depending on the specific plant and fungal genotypes and their abiotic and biotic environments. Although we discuss the possibility of defining mycorrhizas by some physiological characteristic, we conclude that mycorrhizas should be defined on a structural or developmental basis and that any requirement to demonstrate mutualism be eliminated.Key words: mycorrhiza, mutualism, parasitism, physiology, fitness, community.

Mycorrhizal networks: a review of their extent, function, and importance

It is well known from laboratory studies that a single mycorrhizal fungal isolate can colonize different plant species, form interplant linkages, and provide a conduit for interplant transfer of isotopic carbon, nitrogen, phosphorus, or water. There is increasing laboratory and field evidence that the magnitude and direction of transfer is influenced by physiological source–sink gradients between plants. There is also evidence that mycorrhizal fungi play a role in regulating transfer through their own source–sink patterns, frequency of links, and mycorrhizal dependency. Although it is plausible that connections are extensive in nature, field studies have been hampered by our inability to observe them in situ and by belowground complexity. In future, isotopic tracers, morphological observations, microsatellite techniques, and fluorescent dyes will be useful in the study of networks in nature. Mycorrhizal networks have the potential to influence patterns of seedling establishment, interplant competition, plant diversity, and plant community dynamics, but studies in this area are just beginning. Future plant community studies would benefit from concurrent experimental use of fungal network controls, isotopic labeling, direct observation of interplant linkages, and long-term observation in the field. In this paper, we review recent literature on mycorrhizal networks and interplant carbon transfer, suggest future research directions, and highlight promising scientific approaches.Key words: common mycorrhizal network, carbon transfer, source–sink, establishment, competition, diversity.

Ectomycorrhizal community effects on hybrid spruce seedling growth and nutrition in clearcuts

A diverse community of ectomycorrhizal (ECM) fungi is generally considered beneficial to forest ecosystems, but the function of ECM communities should be considered within an ecological context. The growth of hybrid spruce (Picea glauca (Moench) Voss × Picea sitchensis (Bong.) Carrière) seedlings was compared after transplanting into recent clearcuts, where soil moisture and nitrogen are typically readily available. The seedlings had either a "forest" ECM community (taken from forest gap edges) or a "pioneer" ECM community (taken from disturbed road edges) and were planted at wide and close spacing. After 3 years, morphotype distribution and abundance (64% community similarity between "forest" and "pioneer" seedlings) overlapped considerably, but height growth was 25% greater for the "pioneer" seedlings. There was a reduction in diameter at close spacing, with little difference in competition effects between ECM communities. There were no differences detected in foliar nitrogen concentrations and no evidence of nitrogen or phosphorus deficiencies. The advantage of fungi such as Amphinema byssoides, Thelephora terrestris, and Laccaria laccata might be the proliferation of fine roots that allows for the fullest utilization of abundant soil resources. The results suggest that the ECM communities arising after clearcut disturbances are well adapted to these initial soil conditions.Key words: ectomycorrhiza, disturbance, diversity, productivity, competition, Picea glauca.

Ectomycorrhizal fungal communities in an Abies firma forest, with special reference to ectomycorrhizal associations between seedlings and mature trees

Ectomycorrhizal fungal communities of both seedlings and mature trees of Abies firma Sieb. et Zucc. were studied based on morphological and molecular analyses of ectomycorrhizal (ECM) roots. A total of 142 seedlings and 28 soil cores were collected from a 10 m × 30 m plot, and 37 morphotypes were recorded from seedlings and 23 from mature trees. A morphotype, type 21, formed by an unidentified fungus that is likely a Russula species, was dominant on both seedlings (30% of the total number of the ECM roots detected) and mature trees (56%) and overlapped them spatially, suggesting a hyphal linkage between mature trees and seedlings in the plot. A total of 12 morphotypes were recorded from soil blocks underneath fruiting bodies of undescribed Russula sp. 1, the dominant aboveground fruiting body in the plot, among which type 21 was the most abundant. The pattern of restriction fragment length polymorphism of this type was identical to that of the fruiting body of Russula sp. 1. These results indicate that Russula sp. 1 was the dominant ECM fungus associated with both mature trees and seedlings and would play an important role in the dynamics and maintenance of this Abies-dominated forest site.Key words: Abies firma, ectomycorrhizal fungal community, morphotype, PCR-RFLP analysis, tree age.

Ectomycorrhizal colonization of greenhouse-grown Douglas-fir (Pseudotsuga menziesii) seedlings by inoculum associated with the roots of refuge plants sampled from a Douglas-fir forest in the southern interior of British Columbia

Douglas-fir (Pseudotsuga menziesii (Mirb.) Franco) seedlings were grown in the greenhouse in a sterilized mixture of forest soil and vermiculite, which had been inoculated with root fragments from one of six different ectomycorrhizal under story plant species (Arctostaphylos uva-ursi (L.) Spreng, P. menziessi, Salix bebbiana Bebb, Alnus viridis subsp. sinuata (Regel) Ä. Löve & and D. Löve (alder), Betula papyrifera Marsh. (paper birch), Populus tremuloides Michx.) and arbuscular mycorrhizal Calamagrostis rubescens Buckl. (pinegrass) sampled from a dry Douglas-fir forest in the southern interior of British Columbia. The overall objective of the present study was to investigate the inoculum potential of these ectomycorrhizal roots for colonizing Douglas-fir seedlings. A total of seven ectomycorrhizal morphotypes formed on the bioassay seedlings, which were colonized by all treatments except the control. Seedlings growing in soil inoculated with root fragments of Douglas-fir, Arctostaphylos, and paper birch had greater ectomycorrhizal richness and a higher percentage of colonized fine roots relative to the pinegrass and alder treatments. The community of ectomycorrhizal fungi that colonized the bioassay seedlings differed from that associated with some of the same refuge plants assessed in a previously reported field-based study at this site. Different ectomy corrhizal fungal colonization strategies and the retention of refuge plants are discussed in relation to the colonization of outplanted seedlings following clearcutting.Key words: ectomycorrhizae, refuge plants, inoculum potential, soil bioassay, Pseudotsuga menziesii.