151
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Layek B, Sehgal D, Argenta PA, Panyam J, Prabha S. Nanoengineering of Mesenchymal Stem Cells via Surface Modification for Efficient Cancer Therapy. ADVANCED THERAPEUTICS 2019. [DOI: 10.1002/adtp.201900043] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Affiliation(s)
- Buddhadev Layek
- Department of Experimental and Clinical PharmacologyCollege of PharmacyUniversity of Minnesota Minneapolis MN 55455 USA
| | - Drishti Sehgal
- Department of PharmaceuticsCollege of PharmacyUniversity of Minnesota Minneapolis MN 55455 USA
| | - Peter A. Argenta
- Division of Gynecologic OncologyDepartment of Obstetrics and GynecologyUniversity of Minnesota Minneapolis MN 55455 USA
| | - Jayanth Panyam
- Department of PharmaceuticsCollege of PharmacyUniversity of Minnesota Minneapolis MN 55455 USA
| | - Swayam Prabha
- Department of Experimental and Clinical PharmacologyCollege of PharmacyUniversity of Minnesota Minneapolis MN 55455 USA
- Department of PharmaceuticsCollege of PharmacyUniversity of Minnesota Minneapolis MN 55455 USA
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152
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Terzic V, Pousse G, Méallet-Renault R, Grellier P, Dubois J. Dibenzocyclooctynes: Effect of Aryl Substitution on Their Reactivity toward Strain-Promoted Alkyne–Azide Cycloaddition. J Org Chem 2019; 84:8542-8551. [DOI: 10.1021/acs.joc.9b00895] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Affiliation(s)
- Vida Terzic
- Institut de Chimie des Substances Naturelles, CNRS UPR 2301, Univ. Paris-Sud, Univ. Paris-Saclay, 1, av. de la Terrasse, Gif-sur-Yvette 91198, France
| | - Guillaume Pousse
- Institut de Chimie des Substances Naturelles, CNRS UPR 2301, Univ. Paris-Sud, Univ. Paris-Saclay, 1, av. de la Terrasse, Gif-sur-Yvette 91198, France
| | - Rachel Méallet-Renault
- Institut des Sciences Moléculaires d’Orsay, CNRS UMR 8214, Univ. Paris-Sud, Univ. Paris-Saclay, Orsay 91405, France
| | - Philippe Grellier
- UMR 7245 CNRS MCAM, Muséum National d’Histoire Naturelle, CP52, 57 Rue Cuvier, Paris 75005, France
| | - Joëlle Dubois
- Institut de Chimie des Substances Naturelles, CNRS UPR 2301, Univ. Paris-Sud, Univ. Paris-Saclay, 1, av. de la Terrasse, Gif-sur-Yvette 91198, France
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153
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Lee KJ, Kang D, Park HS. Site-Specific Labeling of Proteins Using Unnatural Amino Acids. Mol Cells 2019; 42:386-396. [PMID: 31122001 PMCID: PMC6537655 DOI: 10.14348/molcells.2019.0078] [Citation(s) in RCA: 33] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2019] [Accepted: 05/02/2019] [Indexed: 12/11/2022] Open
Abstract
Labeling of a protein with a specific dye or tag at defined positions is a critical step in tracing the subtle behavior of the protein and assessing its cellular function. Over the last decade, many strategies have been developed to achieve selective labeling of proteins in living cells. In particular, the site-specific unnatural amino acid (UAA) incorporation technique has gained increasing attention since it enables attachment of various organic probes to a specific position of a protein in a more precise way. In this review, we describe how the UAA incorporation technique has expanded our ability to achieve site-specific labeling and visualization of target proteins for functional analyses in live cells.
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Affiliation(s)
- Kyung Jin Lee
- Department of Chemistry, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34141,
Korea
| | - Deokhee Kang
- Department of Chemistry, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34141,
Korea
| | - Hee-Sung Park
- Department of Chemistry, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34141,
Korea
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154
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Cavanaugh M, Silantyeva E, Pylypiv Koh G, Malekzadeh E, Lanzinger WD, Willits RK, Becker ML. RGD-Modified Nanofibers Enhance Outcomes in Rats after Sciatic Nerve Injury. J Funct Biomater 2019; 10:jfb10020024. [PMID: 31146396 PMCID: PMC6637389 DOI: 10.3390/jfb10020024] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2019] [Revised: 05/13/2019] [Accepted: 05/22/2019] [Indexed: 01/23/2023] Open
Abstract
Nerve injuries requiring surgery are a significant problem without good clinical alternatives to the autograft. Tissue engineering strategies are critically needed to provide an alternative. In this study, we utilized aligned nanofibers that were click-modified with the bioactive peptide RGD for rat sciatic nerve repair. Empty conduits or conduits filled with either non-functionalized aligned nanofibers or RGD-functionalized aligned nanofibers were used to repair a 13 mm gap in the rat sciatic nerve of animals for six weeks. The aligned nanofibers encouraged cell infiltration and nerve repair as shown by histological analysis. RGD-functionalized nanofibers reduced muscle atrophy. During the six weeks of recovery, the animals were subjected to motor and sensory tests. Sensory recovery was improved in the RGD-functionalized nanofiber group by week 4, while other groups needed six weeks to show improvement after injury. Thus, the use of functionalized nanofibers provides cues that aid in in vivo nerve repair and should be considered as a future repair strategy.
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Affiliation(s)
- McKay Cavanaugh
- Department of Biomedical Engineering, The University of Akron, Akron, OH 44325-0302, USA.
| | - Elena Silantyeva
- Department of Polymer Science, The University of Akron, Akron, OH 44325, USA.
| | - Galina Pylypiv Koh
- Department of Biomedical Engineering, The University of Akron, Akron, OH 44325-0302, USA.
| | - Elham Malekzadeh
- Department of Biomedical Engineering, The University of Akron, Akron, OH 44325-0302, USA.
| | | | - Rebecca Kuntz Willits
- Department of Biomedical Engineering, The University of Akron, Akron, OH 44325-0302, USA.
| | - Matthew L Becker
- Department of Polymer Science, The University of Akron, Akron, OH 44325, USA.
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155
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Kawasaki Y, Yamanaka Y, Seto Y, Igawa K, Tomooka K. Synthesis of NMs-DACN: Small and Hydrophilic Click Reaction Device. CHEM LETT 2019. [DOI: 10.1246/cl.190026] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Affiliation(s)
- Yuuya Kawasaki
- Institute for Materials Chemistry and Engineering, and IRCCS, Kyushu University, Kasuga, Fukuoka 816-8580, Japan
| | - Yuki Yamanaka
- Department of Molecular and Material Sciences, Kyushu University, Kasuga, Fukuoka 816-8580, Japan
| | - Yuki Seto
- Department of Molecular and Material Sciences, Kyushu University, Kasuga, Fukuoka 816-8580, Japan
| | - Kazunobu Igawa
- Institute for Materials Chemistry and Engineering, and IRCCS, Kyushu University, Kasuga, Fukuoka 816-8580, Japan
- Department of Molecular and Material Sciences, Kyushu University, Kasuga, Fukuoka 816-8580, Japan
| | - Katsuhiko Tomooka
- Institute for Materials Chemistry and Engineering, and IRCCS, Kyushu University, Kasuga, Fukuoka 816-8580, Japan
- Department of Molecular and Material Sciences, Kyushu University, Kasuga, Fukuoka 816-8580, Japan
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156
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Harris T, Alabugin IV. Strain and stereoelectronics in cycloalkyne click chemistry. MENDELEEV COMMUNICATIONS 2019. [DOI: 10.1016/j.mencom.2019.05.001] [Citation(s) in RCA: 28] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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157
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Lin Z, Xiong Y, Xiang S, Gang O. Controllable Covalent-Bound Nanoarchitectures from DNA Frames. J Am Chem Soc 2019; 141:6797-6801. [PMID: 30978016 DOI: 10.1021/jacs.9b01510] [Citation(s) in RCA: 31] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
Could one manipulate nanoscale building blocks using chemical reactions like molecular synthesis to yield new supra-nanoscale objects? The precise control over the final architecture might be challenging due to the size mismatch of molecularly scaled reactive functional groups and nanoscale building blocks, which limits a control over the valence and specific locations of reaction spots. Taking advantage of programmable octahedral DNA frame, we report a facile approach of engineering chemical reactions between nanoscale building blocks toward formation of controlled nanoarchitectures. Azide and alkyne moieties were specifically anchored onto desired vertices of DNA frames, providing chemically reactive nanoconstructs with directionally defined valence. Akin to the conventional molecular reactions, the formation of a variety of nanoscale architectures was readily achieved upon mixing of the frames with the different reactive valence and at different stoichiometric ratios. This strategy may open a door for a programmable synthesis of supra-nanoscale structures with complex architectures and diversified functions.
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Affiliation(s)
- Zhiwei Lin
- Department of Chemical Engineering, Fu Foundation School of Engineering and Applied Science , Columbia University , New York , New York 10027 , United States
| | - Yan Xiong
- Department of Chemical Engineering, Fu Foundation School of Engineering and Applied Science , Columbia University , New York , New York 10027 , United States
| | - Shuting Xiang
- Department of Chemical Engineering, Fu Foundation School of Engineering and Applied Science , Columbia University , New York , New York 10027 , United States
| | - Oleg Gang
- Department of Chemical Engineering, Fu Foundation School of Engineering and Applied Science , Columbia University , New York , New York 10027 , United States.,Department of Applied Physics and Applied Mathematics, Fu Foundation School of Engineering and Applied Science , Columbia University , New York , New York 10027 , United States.,Center for Functional Nanomaterials, Energy & Photon Sciences Directorate , Brookhaven National Laboratory , Upton , New York 11973 , United States
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158
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Hamlin TA, Levandowski BJ, Narsaria AK, Houk KN, Bickelhaupt FM. Structural Distortion of Cycloalkynes Influences Cycloaddition Rates both by Strain and Interaction Energies. Chemistry 2019; 25:6342-6348. [PMID: 30779472 PMCID: PMC6519225 DOI: 10.1002/chem.201900295] [Citation(s) in RCA: 45] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2019] [Revised: 02/16/2019] [Indexed: 12/27/2022]
Abstract
The reactivities of 2‐butyne, cycloheptyne, cyclooctyne, and cyclononyne in the 1,3‐dipolar cycloaddition reaction with methyl azide were evaluated through DFT calculations at the M06‐2X/6‐311++G(d)//M06‐2X/6‐31+G(d) level of theory. Computed activation free energies for the cycloadditions of cycloalkynes are 16.5–22.0 kcal mol−1 lower in energy than that of the acyclic 2‐butyne. The strained or predistorted nature of cycloalkynes is often solely used to rationalize this significant rate enhancement. Our distortion/interaction–activation strain analysis has been revealed that the degree of geometrical predistortion of the cycloalkyne ground‐state geometries acts to enhance reactivity compared with that of acyclic alkynes through three distinct mechanisms, not only due to (i) a reduced strain or distortion energy, but also to (ii) a smaller HOMO–LUMO gap, and (iii) an enhanced orbital overlap, which both contribute to more stabilizing orbital interactions.
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Affiliation(s)
- Trevor A Hamlin
- Department of Theoretical Chemistry, Amsterdam Center for Multiscale Modeling (ACMM), Vrije Universiteit Amsterdam, De Boelelaan 1083, 1081 HV, Amsterdam, The Netherlands
| | - Brian J Levandowski
- Department of Chemistry and Biochemistry, University of California, Los Angeles, CA, 90095, USA
| | - Ayush K Narsaria
- Department of Theoretical Chemistry, Amsterdam Center for Multiscale Modeling (ACMM), Vrije Universiteit Amsterdam, De Boelelaan 1083, 1081 HV, Amsterdam, The Netherlands
| | - Kendall N Houk
- Department of Chemistry and Biochemistry, University of California, Los Angeles, CA, 90095, USA
| | - F Matthias Bickelhaupt
- Department of Theoretical Chemistry, Amsterdam Center for Multiscale Modeling (ACMM), Vrije Universiteit Amsterdam, De Boelelaan 1083, 1081 HV, Amsterdam, The Netherlands.,Institute for Molecules and Materials (IMM), Radboud University of Nijmegen, Heyendaalseweg 135, 6525 AJ, Nijmegen, The Netherlands
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159
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Nakamura K, Tsubokura K, Kurbangalieva A, Nakao Y, Murase T, Shimoda T, Tanaka K. Efficient route to RIKEN click probes for glycoconjugation. J Carbohydr Chem 2019. [DOI: 10.1080/07328303.2019.1578886] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
Affiliation(s)
- Kayo Nakamura
- GlycoTargeting Research Laboratory, RIKEN Baton Zone Program, Wako, Japan
| | - Kazuki Tsubokura
- Biofunctional Synthetic Chemistry Laboratory, RIKEN Cluster for Pioneering Research, Wako, Japan
- Graduate School of Advanced Science and Engineering, Department of Chemistry and Biochemistry, Waseda University, Shinjuku-ku, Japan
| | - Almira Kurbangalieva
- Biofunctional Chemistry Laboratory, Butlerov Institute of Chemistry, Kazan Federal University, Kazan, Russian
| | - Yoichi Nakao
- Graduate School of Advanced Science and Engineering, Department of Chemistry and Biochemistry, Waseda University, Shinjuku-ku, Japan
| | - Takefumi Murase
- GlycoTargeting Research Laboratory, RIKEN Baton Zone Program, Wako, Japan
- GlyTech, Inc, Shimogyo-ku, Japan
| | - Taiji Shimoda
- GlycoTargeting Research Laboratory, RIKEN Baton Zone Program, Wako, Japan
- GlyTech, Inc, Shimogyo-ku, Japan
| | - Katsunori Tanaka
- GlycoTargeting Research Laboratory, RIKEN Baton Zone Program, Wako, Japan
- Biofunctional Synthetic Chemistry Laboratory, RIKEN Cluster for Pioneering Research, Wako, Japan
- Biofunctional Chemistry Laboratory, Butlerov Institute of Chemistry, Kazan Federal University, Kazan, Russian
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160
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Philip DL, Silantyeva EA, Becker ML, Willits RK. RGD-Functionalized Nanofibers Increase Early GFAP Expression during Neural Differentiation of Mouse Embryonic Stem Cells. Biomacromolecules 2019; 20:1443-1454. [PMID: 30726667 PMCID: PMC6650284 DOI: 10.1021/acs.biomac.9b00018] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
Stem cell differentiation toward a specific lineage is controlled by its microenvironment. Polymer scaffolds have long been investigated to provide microenvironment cues; however, synthetic polymers lack the specific signaling motifs necessary to direct cellular responses on their own. In this study, we fabricated random and aligned poly(ε-caprolactone) nanofiber substrates, surface-functionalized with RGD viastrain-promoted azide-alkyne cycloaddition, that were used to investigate the role of a covalently tethered bioactive peptide (RGD) and nanofiber orientation on neural differentiation of mouse embryonic stem cells. Gene and protein expression showed neural differentiation progression over 14 days, with similar expression on RGD random and aligned nanofibers for neurons and glia over time. The high levels of glial fibrillary acidic protein expression at early time points were indicative of neural progenitors, and occurred earlier than on controls or in previous reports. These results highlight the influence of RGD binding versus topography in differentiation.
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161
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García-Rodeja Y, Fernández I. Factors Controlling the Reactivity of Strained-Alkyne Embedded Cycloparaphenylenes. J Org Chem 2019; 84:4330-4337. [DOI: 10.1021/acs.joc.9b00292] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Yago García-Rodeja
- Departamento de Química Orgánica I and Centro de Innovación en Química Avanzada (ORFEO−CINQA), Facultad de Ciencias Químicas, Universidad Complutense de Madrid, 28040-Madrid, Spain
| | - Israel Fernández
- Departamento de Química Orgánica I and Centro de Innovación en Química Avanzada (ORFEO−CINQA), Facultad de Ciencias Químicas, Universidad Complutense de Madrid, 28040-Madrid, Spain
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162
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Fukushima S, Ashizawa M, Kawauchi S, Michinobu T. Strain‐Promoted Double Azide Addition to Octadehydrodibenzo[12]annulene Derivatives. Helv Chim Acta 2019. [DOI: 10.1002/hlca.201900016] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Affiliation(s)
- Satomi Fukushima
- Department of Organic and Polymeric MaterialsTokyo Institute of Technology, 2-12-1 Ookayama, Meguro-ku Tokyo 152-8552 Japan
| | - Minoru Ashizawa
- Department of Organic and Polymeric MaterialsTokyo Institute of Technology, 2-12-1 Ookayama, Meguro-ku Tokyo 152-8552 Japan
| | - Susumu Kawauchi
- Department of Organic and Polymeric MaterialsTokyo Institute of Technology, 2-12-1 Ookayama, Meguro-ku Tokyo 152-8552 Japan
| | - Tsuyoshi Michinobu
- Department of Organic and Polymeric MaterialsTokyo Institute of Technology, 2-12-1 Ookayama, Meguro-ku Tokyo 152-8552 Japan
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163
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Hassenrück J, Wittmann V. Cyclopropene derivatives of aminosugars for metabolic glycoengineering. Beilstein J Org Chem 2019; 15:584-601. [PMID: 30931000 PMCID: PMC6423581 DOI: 10.3762/bjoc.15.54] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2018] [Accepted: 02/19/2019] [Indexed: 12/25/2022] Open
Abstract
Cyclopropenes have been proven valuable chemical reporter groups for metabolic glycoengineering (MGE). They readily react with tetrazines in an inverse electron-demand Diels-Alder (DAinv) reaction, a prime example of a bioorthogonal ligation reaction, allowing their visualization in biological systems. Here, we present a comparative study of six cyclopropene-modified hexosamine derivatives and their suitability for MGE. Three mannosamine derivatives in which the cyclopropene moiety is attached to the sugar by either an amide or a carbamate linkage and that differ by the presence or absence of a stabilizing methyl group at the double bond have been examined. We determined their DAinv reaction kinetics and their labeling intensities after metabolic incorporation. To determine the efficiencies by which the derivatives are metabolized to sialic acids, we synthesized and investigated the corresponding cyclopropane derivatives because cyclopropenes are not stable under the analysis conditions. From these experiments, it became obvious that N-(cycloprop-2-en-1-ylcarbonyl)-modified (Cp-modified) mannosamine has the highest metabolic acceptance. However, carbamate-linked N-(2-methylcycloprop-2-en-1-ylmethyloxycarbonyl)-modified (Cyoc-modified) mannosamine despite its lower metabolic acceptance results in the same cell-surface labeling intensity due to its superior reactivity in the DAinv reaction. Based on the high incorporation efficiency of the Cp derivative we synthesized and investigated two new Cp-modified glucosamine and galactosamine derivatives. Both compounds lead to comparable, distinct cell-surface staining after MGE. We further found that the amide-linked Cp-modified glucosamine derivative but not the Cyoc-modified glucosamine is metabolically converted to the corresponding sialic acid.
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Affiliation(s)
- Jessica Hassenrück
- University of Konstanz, Department of Chemistry and Konstanz Research School Chemical Biology (KoRS-CB), Universitätsstr. 10, 78457 Konstanz, Germany
| | - Valentin Wittmann
- University of Konstanz, Department of Chemistry and Konstanz Research School Chemical Biology (KoRS-CB), Universitätsstr. 10, 78457 Konstanz, Germany
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164
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Ogura A, Tanaka K. Next-generation Glycocluster for Achieving Pattern Recognition in Living System. J SYN ORG CHEM JPN 2019. [DOI: 10.5059/yukigoseikyokaishi.77.163] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Affiliation(s)
| | - Katsunori Tanaka
- Biofunctional Synthetic Chemistry Laboratory, RIKEN Cluster for Pioneering Research
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165
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Knighton R, Sharma K, Robertson NS, Spring DR, Wills M. Synthesis and Reactivity of a Bis-Strained Alkyne Derived from 1,1'-Biphenyl-2,2',6,6'-tetrol. ACS OMEGA 2019; 4:2160-2167. [PMID: 31459462 PMCID: PMC6648819 DOI: 10.1021/acsomega.8b03634] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/02/2019] [Accepted: 01/10/2019] [Indexed: 05/03/2023]
Abstract
The novel "double strained alkyne" 3 has been prepared and evaluated in strain-promoted azide-alkyne cycloaddition reactions with azides. The X-ray crystallographic structure of 3, which was prepared in one step from 1,1'-biphenyl-2,2',6,6'-tetrol 4, reveals the strained nature of the alkynes. Dialkyne 3 undergoes cycloaddition reactions with a number of azides, giving mixtures of regiosiomeric products in excellent yields. The monoaddition products were not observed or isolated from the reactions, suggesting that the second cycloaddition proceeds at a faster rate than the first, and this is supported by molecular modeling studies. Dialkyne 3 was successfully employed for "peptide stapling" of a p53-based diazido peptide, whereby two azides are bridged to give a product with a stabilized conformation.
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Affiliation(s)
- Richard
C. Knighton
- Department
of Chemistry, University of Warwick, Gibbet Hill Road, Coventry CV4 7AL, U.K.
| | - Krishna Sharma
- Department
of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, U.K.
| | - Naomi S. Robertson
- Department
of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, U.K.
| | - David R. Spring
- Department
of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, U.K.
- E-mail: (D.R.S.)
| | - Martin Wills
- Department
of Chemistry, University of Warwick, Gibbet Hill Road, Coventry CV4 7AL, U.K.
- E-mail: (M.W.)
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166
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Nouraie P, Moradi Dehaghi S, Foroumadi A. Coumarin-1,2,3-triazole hybrid derivatives: Green synthesis and DFT calculations. SYNTHETIC COMMUN 2019. [DOI: 10.1080/00397911.2018.1557686] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
Affiliation(s)
- Pegah Nouraie
- Department of Chemistry, Tehran North Branch, Islamic Azad University, Tehran, Iran
| | | | - Alireza Foroumadi
- Drug Design and Development Research Center, The Institute of Pharmaceutical Sciences (TIPS), Tehran University of Medical Sciences, Tehran, Iran
- Department of Medicinal Chemistry, Faculty of Pharmacy, Tehran University of Medical Sciences, Tehran, Iran
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167
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Affiliation(s)
- Seiji SAKAMOTO
- Graduate School of Engineering, Department of Synthetic Chemistry and Biological Chemistry, Kyoto University
| | - Itaru HAMACHI
- Graduate School of Engineering, Department of Synthetic Chemistry and Biological Chemistry, Kyoto University
- ERATO Innovative Molecular Technology for Neuroscience Project, Japan Science and Technology Agency (JST)
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168
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Takayama Y, Kusamori K, Nishikawa M. Click Chemistry as a Tool for Cell Engineering and Drug Delivery. Molecules 2019; 24:molecules24010172. [PMID: 30621193 PMCID: PMC6337375 DOI: 10.3390/molecules24010172] [Citation(s) in RCA: 96] [Impact Index Per Article: 19.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2018] [Revised: 12/24/2018] [Accepted: 12/29/2018] [Indexed: 01/14/2023] Open
Abstract
Click chemistry has great potential for use in binding between nucleic acids, lipids, proteins, and other molecules, and has been used in many research fields because of its beneficial characteristics, including high yield, high specificity, and simplicity. The recent development of copper-free and less cytotoxic click chemistry reactions has allowed for the application of click chemistry to the field of medicine. Moreover, metabolic glycoengineering allows for the direct modification of living cells with substrates for click chemistry either in vitro or in vivo. As such, click chemistry has become a powerful tool for cell transplantation and drug delivery. In this review, we describe some applications of click chemistry for cell engineering in cell transplantation and for drug delivery in the diagnosis and treatment of diseases.
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Affiliation(s)
- Yukiya Takayama
- Laboratory of Biopharmaceutics, Faculty of Pharmaceutical Sciences, Tokyo University of Science, 2641 Yamazaki, Noda, Chiba 278-8510, Japan.
| | - Kosuke Kusamori
- Laboratory of Biopharmaceutics, Faculty of Pharmaceutical Sciences, Tokyo University of Science, 2641 Yamazaki, Noda, Chiba 278-8510, Japan.
| | - Makiya Nishikawa
- Laboratory of Biopharmaceutics, Faculty of Pharmaceutical Sciences, Tokyo University of Science, 2641 Yamazaki, Noda, Chiba 278-8510, Japan.
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169
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Simon J, Christmann S, Mailänder V, Wurm FR, Landfester K. Protein Corona Mediated Stealth Properties of Biocompatible Carbohydrate‐based Nanocarriers. Isr J Chem 2019. [DOI: 10.1002/ijch.201800166] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Johanna Simon
- Max Planck Institute for Polymer Research Ackermannweg 10 55128 Mainz Germany
- Dermatology ClinicUniversity Medical Center of the Johannes Gutenberg-University Mainz Langenbeckstr. 1 55131 Mainz Germany
| | - Sarah Christmann
- Max Planck Institute for Polymer Research Ackermannweg 10 55128 Mainz Germany
| | - Volker Mailänder
- Max Planck Institute for Polymer Research Ackermannweg 10 55128 Mainz Germany
- Dermatology ClinicUniversity Medical Center of the Johannes Gutenberg-University Mainz Langenbeckstr. 1 55131 Mainz Germany
| | - Frederik R. Wurm
- Max Planck Institute for Polymer Research Ackermannweg 10 55128 Mainz Germany
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170
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Yoshida S, Kuribara T, Ito H, Meguro T, Nishiyama Y, Karaki F, Hatakeyama Y, Koike Y, Kii I, Hosoya T. A facile preparation of functional cycloalkynes via an azide-to-cycloalkyne switching approach. Chem Commun (Camb) 2019; 55:3556-3559. [DOI: 10.1039/c9cc01113g] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
Abstract
Terminal alkyne-selective click conjugation of diynes bearing strained and terminal alkyne moieties with functional azides has been achieved by transient protection of strained alkynes via complexation with copper to easily afford various functional cycloalkynes.
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Affiliation(s)
- Suguru Yoshida
- Laboratory of Chemical Bioscience, Institute of Biomaterials and Bioengineering
- Tokyo Medical and Dental University (TMDU)
- Tokyo 101-0062
- Japan
| | - Tomoko Kuribara
- Laboratory of Chemical Bioscience, Institute of Biomaterials and Bioengineering
- Tokyo Medical and Dental University (TMDU)
- Tokyo 101-0062
- Japan
| | - Harumi Ito
- Laboratory of Chemical Bioscience, Institute of Biomaterials and Bioengineering
- Tokyo Medical and Dental University (TMDU)
- Tokyo 101-0062
- Japan
- Laboratory for Pathophysiological and Health Science
| | - Tomohiro Meguro
- Laboratory of Chemical Bioscience, Institute of Biomaterials and Bioengineering
- Tokyo Medical and Dental University (TMDU)
- Tokyo 101-0062
- Japan
| | - Yoshitake Nishiyama
- Laboratory of Chemical Bioscience, Institute of Biomaterials and Bioengineering
- Tokyo Medical and Dental University (TMDU)
- Tokyo 101-0062
- Japan
| | - Fumika Karaki
- Laboratory of Chemical Bioscience, Institute of Biomaterials and Bioengineering
- Tokyo Medical and Dental University (TMDU)
- Tokyo 101-0062
- Japan
| | - Yasutomo Hatakeyama
- Laboratory of Chemical Bioscience, Institute of Biomaterials and Bioengineering
- Tokyo Medical and Dental University (TMDU)
- Tokyo 101-0062
- Japan
| | - Yuka Koike
- Common Facilities Unit
- Compass to Healthy Life Research Complex Program
- RIKEN Cluster for Science
- Technology and Innovation Hub
- Kobe 650-0047
| | - Isao Kii
- Laboratory for Pathophysiological and Health Science
- RIKEN Center for Biosystems Dynamics Research (BDR)
- Kobe 650-0047
- Japan
- Common Facilities Unit
| | - Takamitsu Hosoya
- Laboratory of Chemical Bioscience, Institute of Biomaterials and Bioengineering
- Tokyo Medical and Dental University (TMDU)
- Tokyo 101-0062
- Japan
- Laboratory for Chemical Biology
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171
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Cai X, Wang D, Gao Y, Yi L, Yang X, Xi Z. Tetra-fluorinated aromatic azide for highly efficient bioconjugation in living cells. RSC Adv 2019; 9:23-26. [PMID: 35521584 PMCID: PMC9059488 DOI: 10.1039/c8ra09303b] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2018] [Accepted: 12/10/2018] [Indexed: 11/27/2022] Open
Abstract
We developed a fast strain-promoted azide–alkyne cycloaddition reaction (SPAAC) by tetra-fluorinated aromatic azide with a kinetic constant of 3.60 M−1 s−1, which is among the fastest SPAAC ligations reported so far. We successfully employed the reaction for covalent labelling of proteins with high efficiency and for bioimaging of mitochondria in living cells. The reaction could be a generally useful toolbox for chemical biology and biomaterials. A fast strain-promoted azide–alkyne cycloaddition based on tetra-fluorinated aromatic azide was developed and applied to label proteins and living cells with high efficiency.![]()
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Affiliation(s)
- Xuekang Cai
- Department of Nuclear Medicine
- Peking University First Hospital
- Beijing
- China
- State Key Laboratory of Organic–Inorganic Composites
| | - Dan Wang
- State Key Laboratory of Elemento-Organic Chemistry
- Department of Chemical Biology
- National Pesticide Engineering Research Center (Tianjin)
- Nankai University
- Tianjin
| | - Yasi Gao
- State Key Laboratory of Organic–Inorganic Composites
- Beijing University of Chemical Technology
- Beijing 100029
- China
| | - Long Yi
- State Key Laboratory of Organic–Inorganic Composites
- Beijing University of Chemical Technology
- Beijing 100029
- China
- Collaborative Innovation Center of Chemical Science and Engineering (Tianjin)
| | - Xing Yang
- Department of Nuclear Medicine
- Peking University First Hospital
- Beijing
- China
- Peking University School of Medical Technology
| | - Zhen Xi
- State Key Laboratory of Elemento-Organic Chemistry
- Department of Chemical Biology
- National Pesticide Engineering Research Center (Tianjin)
- Nankai University
- Tianjin
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172
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Tanaka K, Nomura S. Renovation of Glycomolecules for Molecular Imaging Studies: Low-Affinity Glycan Ligands can be Used for Selective Cell Imaging? HETEROCYCLES 2019. [DOI: 10.3987/rev-18-sr(f)3] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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173
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Sakai R, Iguchi H, Maruyama T. Quantification of azide groups on a material surface and a biomolecule using a clickable and cleavable fluorescent compound. RSC Adv 2019; 9:4621-4625. [PMID: 35520182 PMCID: PMC9060625 DOI: 10.1039/c8ra09421g] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2018] [Accepted: 01/29/2019] [Indexed: 11/21/2022] Open
Abstract
We propose a novel method for quantifying azide groups on a solid surface and a protein.
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Affiliation(s)
- Rika Sakai
- Department of Chemical Science and Engineering
- Graduate School of Engineering
- Kobe University
- Kobe 657-8501
- Japan
| | - Hiroki Iguchi
- Department of Chemical Science and Engineering
- Graduate School of Engineering
- Kobe University
- Kobe 657-8501
- Japan
| | - Tatsuo Maruyama
- Department of Chemical Science and Engineering
- Graduate School of Engineering
- Kobe University
- Kobe 657-8501
- Japan
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174
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Cheng L, Kang X, Wang D, Gao Y, Yi L, Xi Z. The one-pot nonhydrolysis Staudinger reaction and Staudinger or SPAAC ligation. Org Biomol Chem 2019; 17:5675-5679. [DOI: 10.1039/c9ob00528e] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
The one-pot nonhydrolysis Staudinger reaction and Staudinger or SPAAC ligation were used for producing a FRET-based dyad in living cells as a proof-of-concept study.
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Affiliation(s)
- Longhuai Cheng
- State Key Laboratory of Elemento-Organic Chemistry and Department of Chemical Biology
- National Engineering Research Center of Pesticide (Tianjin)
- College of Chemistry
- Nankai University
- Tianjin 300071
| | - Xueying Kang
- State Key Laboratory of Organic–Inorganic Composites and Beijing Key Laboratory of Bioprocess
- Beijing University of Chemical Technology (BUCT)
- Beijing 100029
- China
| | - Dan Wang
- State Key Laboratory of Elemento-Organic Chemistry and Department of Chemical Biology
- National Engineering Research Center of Pesticide (Tianjin)
- College of Chemistry
- Nankai University
- Tianjin 300071
| | - Yasi Gao
- State Key Laboratory of Organic–Inorganic Composites and Beijing Key Laboratory of Bioprocess
- Beijing University of Chemical Technology (BUCT)
- Beijing 100029
- China
| | - Long Yi
- State Key Laboratory of Organic–Inorganic Composites and Beijing Key Laboratory of Bioprocess
- Beijing University of Chemical Technology (BUCT)
- Beijing 100029
- China
- Collaborative Innovation Center of Chemical Science and Engineering
| | - Zhen Xi
- State Key Laboratory of Elemento-Organic Chemistry and Department of Chemical Biology
- National Engineering Research Center of Pesticide (Tianjin)
- College of Chemistry
- Nankai University
- Tianjin 300071
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175
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Forshaw S, Knighton RC, Reber J, Parker JS, Chmel NP, Wills M. A strained alkyne-containing bipyridine reagent; synthesis, reactivity and fluorescence properties. RSC Adv 2019; 9:36154-36161. [PMID: 35540623 PMCID: PMC9074932 DOI: 10.1039/c9ra06866j] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2019] [Accepted: 10/29/2019] [Indexed: 01/18/2023] Open
Abstract
We report the synthesis of a bipyridyl reagent containing a strained alkyne, which significantly restricts its flexibility. Upon strain-promoted alkyne-azide cycloaddition (SPAAC) with an azide, which does not require a Cu catalyst, the structure becomes significantly more flexible and an increase in fluorescence is observed. Upon addition of Zn(ii), the fluorescence is enhanced further. The reagent has the potential to act as a fluorescent labelling agent with azide-containing substrates, including biological molecules. A bipyridyl reagent containing a strained alkyne 7, reacts with benzyl azide to give a significantly more flexible product 10 and an increase in fluorescence is observed. Upon addition of Zn(ii), the fluorescence is enhanced further.![]()
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Affiliation(s)
- Sam Forshaw
- Department of Chemistry
- The University of Warwick
- Coventry
- UK
| | | | - Jami Reber
- Department of Chemistry
- The University of Warwick
- Coventry
- UK
| | - Jeremy S. Parker
- Early Chemical Development, Pharmaceutical Sciences
- IMED Biotech Unit
- AstraZeneca
- Macclesfield
- UK
| | | | - Martin Wills
- Department of Chemistry
- The University of Warwick
- Coventry
- UK
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176
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Liu X, Gong P, Song P, Xie F, Miller II AL, Chen S, Lu L. Rapid conjugation of nanoparticles, proteins and siRNAs to microbubbles by strain-promoted click chemistry for ultrasound imaging and drug delivery. Polym Chem 2019; 10:705-717. [DOI: 10.1039/c8py01721b] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Strain-promoted alkyne–azide cycloaddition (SPAAC) click chemistry was applied for the rapid conjugation of nanoparticles, proteins, and siRNA-micelles to ultrasound microbubbles.
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Affiliation(s)
- Xifeng Liu
- Department of Physiology and Biomedical Engineering
- Mayo Clinic
- Rochester
- USA
- Department of Orthopedic Surgery
| | - Ping Gong
- Department of Radiology
- Mayo Clinic
- Rochester
- USA
| | | | - Feng Xie
- Division of Cardiovascular Medicine
- Nebraska Medical Center
- Omaha
- USA
| | | | - Shigao Chen
- Department of Radiology
- Mayo Clinic
- Rochester
- USA
| | - Lichun Lu
- Department of Physiology and Biomedical Engineering
- Mayo Clinic
- Rochester
- USA
- Department of Orthopedic Surgery
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177
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Schaub TA, Margraf JT, Zakharov L, Reuter K, Jasti R. Strain‐Promoted Reactivity of Alkyne‐Containing Cycloparaphenylenes. Angew Chem Int Ed Engl 2018; 57:16348-16353. [DOI: 10.1002/anie.201808611] [Citation(s) in RCA: 27] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2018] [Revised: 09/27/2018] [Indexed: 12/18/2022]
Affiliation(s)
- Tobias A. Schaub
- Department of Chemistry & Biochemistry and Material Science Institute University of Oregon Eugene OR 97403 USA
| | - Johannes T. Margraf
- Chair of Theoretical Chemistry Technical University of Munich 85747 Garching Germany
| | - Lev Zakharov
- Department of Chemistry & Biochemistry and Material Science Institute University of Oregon Eugene OR 97403 USA
| | - Karsten Reuter
- Chair of Theoretical Chemistry Technical University of Munich 85747 Garching Germany
| | - Ramesh Jasti
- Department of Chemistry & Biochemistry and Material Science Institute University of Oregon Eugene OR 97403 USA
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178
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Schaub TA, Margraf JT, Zakharov L, Reuter K, Jasti R. Strain‐Promoted Reactivity of Alkyne‐Containing Cycloparaphenylenes. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201808611] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Tobias A. Schaub
- Department of Chemistry & Biochemistry and Material Science Institute University of Oregon Eugene OR 97403 USA
| | - Johannes T. Margraf
- Chair of Theoretical Chemistry Technical University of Munich 85747 Garching Germany
| | - Lev Zakharov
- Department of Chemistry & Biochemistry and Material Science Institute University of Oregon Eugene OR 97403 USA
| | - Karsten Reuter
- Chair of Theoretical Chemistry Technical University of Munich 85747 Garching Germany
| | - Ramesh Jasti
- Department of Chemistry & Biochemistry and Material Science Institute University of Oregon Eugene OR 97403 USA
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179
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Alvarez-Dorta D, Thobie-Gautier C, Croyal M, Bouzelha M, Mével M, Deniaud D, Boujtita M, Gouin SG. Electrochemically Promoted Tyrosine-Click-Chemistry for Protein Labeling. J Am Chem Soc 2018; 140:17120-17126. [DOI: 10.1021/jacs.8b09372] [Citation(s) in RCA: 61] [Impact Index Per Article: 10.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Affiliation(s)
- Dimitri Alvarez-Dorta
- Chimie Et Interdisciplinarité, Synthèse, Analyse, Modélisation (CEISAM), UMR CNRS 6230, UFR des Sciences et des Techniques, Université de Nantes, 2 rue de la Houssinière, BP 92208, 44322 Nantes Cedex 3, France
| | - Christine Thobie-Gautier
- Chimie Et Interdisciplinarité, Synthèse, Analyse, Modélisation (CEISAM), UMR CNRS 6230, UFR des Sciences et des Techniques, Université de Nantes, 2 rue de la Houssinière, BP 92208, 44322 Nantes Cedex 3, France
| | - Mikael Croyal
- Centre de Recherche en Nutrition Humaine Ouest (CRNHO), West Human Nutrition Research Center, F-44000 Nantes, France
- UMR 1280 PhAN, INRA, F-44000 Nantes, France
| | | | - Mathieu Mével
- INSERM UMR1089, Université de Nantes, CHU de Nantes, France
| | - David Deniaud
- Chimie Et Interdisciplinarité, Synthèse, Analyse, Modélisation (CEISAM), UMR CNRS 6230, UFR des Sciences et des Techniques, Université de Nantes, 2 rue de la Houssinière, BP 92208, 44322 Nantes Cedex 3, France
| | - Mohammed Boujtita
- Chimie Et Interdisciplinarité, Synthèse, Analyse, Modélisation (CEISAM), UMR CNRS 6230, UFR des Sciences et des Techniques, Université de Nantes, 2 rue de la Houssinière, BP 92208, 44322 Nantes Cedex 3, France
| | - Sébastien G. Gouin
- Chimie Et Interdisciplinarité, Synthèse, Analyse, Modélisation (CEISAM), UMR CNRS 6230, UFR des Sciences et des Techniques, Université de Nantes, 2 rue de la Houssinière, BP 92208, 44322 Nantes Cedex 3, France
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180
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Yu A, Zhao J, Peng W, Banazadeh A, Williamson SD, Goli M, Huang Y, Mechref Y. Advances in mass spectrometry-based glycoproteomics. Electrophoresis 2018; 39:3104-3122. [PMID: 30203847 PMCID: PMC6375712 DOI: 10.1002/elps.201800272] [Citation(s) in RCA: 64] [Impact Index Per Article: 10.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2018] [Revised: 09/03/2018] [Accepted: 09/03/2018] [Indexed: 12/13/2022]
Abstract
Protein glycosylation, an important PTM, plays an essential role in a wide range of biological processes such as immune response, intercellular signaling, inflammation, and host-pathogen interaction. Aberrant glycosylation has been correlated with various diseases. However, studying protein glycosylation remains challenging because of low abundance, microheterogeneities of glycosylation sites, and poor ionization efficiency of glycopeptides. Therefore, the development of sensitive and accurate approaches to characterize protein glycosylation is crucial. The identification and characterization of protein glycosylation by MS is referred to as the field of glycoproteomics. Methods such as enrichment, metabolic labeling, and derivatization of glycopeptides in conjunction with different MS techniques and bioinformatics tools, have been developed to achieve an unequivocal quantitative and qualitative characterization of glycoproteins. This review summarizes the recent developments in the field of glycoproteomics over the past 6 years (2012 to 2018).
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Affiliation(s)
- Aiying Yu
- Department of Chemistry and Biochemistry, Texas Tech University, Lubbock, TX, USA
| | - Jingfu Zhao
- Department of Chemistry and Biochemistry, Texas Tech University, Lubbock, TX, USA
| | - Wenjing Peng
- Department of Chemistry and Biochemistry, Texas Tech University, Lubbock, TX, USA
| | - Alireza Banazadeh
- Department of Chemistry and Biochemistry, Texas Tech University, Lubbock, TX, USA
| | - Seth D Williamson
- Department of Chemistry and Biochemistry, Texas Tech University, Lubbock, TX, USA
| | - Mona Goli
- Department of Chemistry and Biochemistry, Texas Tech University, Lubbock, TX, USA
| | - Yifan Huang
- Department of Chemistry and Biochemistry, Texas Tech University, Lubbock, TX, USA
| | - Yehia Mechref
- Department of Chemistry and Biochemistry, Texas Tech University, Lubbock, TX, USA
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181
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Kim EJ. Chemical Reporters and Their Bioorthogonal Reactions for Labeling Protein O-GlcNAcylation. Molecules 2018; 23:molecules23102411. [PMID: 30241321 PMCID: PMC6222402 DOI: 10.3390/molecules23102411] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2018] [Revised: 09/11/2018] [Accepted: 09/12/2018] [Indexed: 12/22/2022] Open
Abstract
Protein O-GlcNAcylation is a non-canonical glycosylation of nuclear, mitochondrial, and cytoplasmic proteins with the attachment of a single O-linked β-N-acetyl-glucosamine (O-GlcNAc) moiety. Advances in labeling and identifying O-GlcNAcylated proteins have helped improve the understanding of O-GlcNAcylation at levels that range from basic molecular biology to cell signaling and gene regulation to physiology and disease. This review describes these advances in chemistry involving chemical reporters and their bioorthogonal reactions utilized for detection and construction of O-GlcNAc proteomes in a molecular mechanistic view. This detailed view will help better understand the principles of the chemistries utilized for biology discovery and promote continued efforts in developing new molecular tools and new strategies to further explore protein O-GlcNAcylation.
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Affiliation(s)
- Eun Ju Kim
- Department of Science Education-Chemistry Major, Daegu University, Gyeongsan-si 712-714, Gyeongsangbuk-do, Korea.
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182
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Hamlin TA, Svatunek D, Yu S, Ridder L, Infante I, Visscher L, Bickelhaupt FM. Elucidating the Trends in Reactivity of Aza-1,3-Dipolar Cycloadditions. European J Org Chem 2018. [DOI: 10.1002/ejoc.201800572] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Affiliation(s)
- Trevor A. Hamlin
- Department of Theoretical Chemistry and Amsterdam Center for Multiscale Modeling (ACMM); Vrije Universiteit Amsterdam; De Boelelaan 1083 1081 HV Amsterdam The Netherlands
| | - Dennis Svatunek
- Department of Theoretical Chemistry and Amsterdam Center for Multiscale Modeling (ACMM); Vrije Universiteit Amsterdam; De Boelelaan 1083 1081 HV Amsterdam The Netherlands
- Institute of Applied Synthetic Chemistry; Technische Universität Wien (TU Wien); Getreidemarkt 9 1060 Vienna Austria
| | - Song Yu
- Department of Theoretical Chemistry and Amsterdam Center for Multiscale Modeling (ACMM); Vrije Universiteit Amsterdam; De Boelelaan 1083 1081 HV Amsterdam The Netherlands
| | - Lars Ridder
- Netherlands eScience Center; Science Park 140 1098 XG Amsterdam The Netherlands
| | - Ivan Infante
- Institute for Molecules and Materials (IMM); Radboud University; Heyendaalseweg 135 6525 AJ Nijmegen The Netherlands
| | - Lucas Visscher
- Department of Theoretical Chemistry and Amsterdam Center for Multiscale Modeling (ACMM); Vrije Universiteit Amsterdam; De Boelelaan 1083 1081 HV Amsterdam The Netherlands
| | - F. Matthias Bickelhaupt
- Department of Theoretical Chemistry and Amsterdam Center for Multiscale Modeling (ACMM); Vrije Universiteit Amsterdam; De Boelelaan 1083 1081 HV Amsterdam The Netherlands
- Institute for Molecules and Materials (IMM); Radboud University; Heyendaalseweg 135 6525 AJ Nijmegen The Netherlands
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183
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Lis C, Rubner S, Gröst C, Hoffmann R, Knappe D, Berg T. iSPAAC: Isomer-Free Generation of a Bcl-xL
-Inhibitor in Living Cells. Chemistry 2018; 24:13762-13766. [DOI: 10.1002/chem.201803032] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2018] [Indexed: 11/12/2022]
Affiliation(s)
- Christian Lis
- Leipzig University; Institute of Organic Chemistry; Johannisallee 29 04103 Leipzig Germany
| | - Stefan Rubner
- Leipzig University; Institute of Organic Chemistry; Johannisallee 29 04103 Leipzig Germany
| | - Corinna Gröst
- Leipzig University; Institute of Organic Chemistry; Johannisallee 29 04103 Leipzig Germany
| | - Ralf Hoffmann
- Leipzig University; Institute of Bioanalytical Chemistry and Center for Biotechnology and Biomedicine (BBZ); Deutscher Platz 5 04103 Leipzig Germany
| | - Daniel Knappe
- Leipzig University; Institute of Bioanalytical Chemistry and Center for Biotechnology and Biomedicine (BBZ); Deutscher Platz 5 04103 Leipzig Germany
| | - Thorsten Berg
- Leipzig University; Institute of Organic Chemistry; Johannisallee 29 04103 Leipzig Germany
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184
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Sun L, Ishihara M, Middleton DR, Tiemeyer M, Avci FY. Metabolic labeling of HIV-1 envelope glycoprotein gp120 to elucidate the effect of gp120 glycosylation on antigen uptake. J Biol Chem 2018; 293:15178-15194. [PMID: 30115684 DOI: 10.1074/jbc.ra118.004798] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2018] [Revised: 08/12/2018] [Indexed: 12/21/2022] Open
Abstract
The glycan shield on the envelope glycoprotein gp120 of HIV-1 has drawn immense attention as a vulnerable site for broadly neutralizing antibodies and for its significant impact on host adaptive immune response to HIV-1. Glycosylation sites and glycan composition/structure at each site on gp120 along with the interactions of gp120 glycan shield with broadly neutralizing antibodies have been extensively studied. However, a method for directly and selectively tracking gp120 glycans has been lacking. Here, we integrate metabolic labeling and click chemistry technology with recombinant gp120 expression to demonstrate that gp120 glycans could be specifically labeled and directly detected. Selective labeling of gp120 by N-azidoacetylmannosamine (ManNAz) and N-azidoacetylgalactosamine (GalNAz) incorporation into the gp120 glycan shield was characterized by MS of tryptic glycopeptides. By using metabolically labeled gp120, we investigated the impact of gp120 glycosylation on its interaction with host cells and demonstrated that oligomannose enrichment and sialic acid deficiency drastically enhanced gp120 uptake by bone marrow-derived dendritic cells. Collectively, our data reveal an effective labeling and detection method for gp120, serving as a tool for functional characterization of the gp120 glycans and potentially other glycosylated proteins.
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Affiliation(s)
- Lina Sun
- From the Department of Biochemistry and Molecular Biology, Center for Molecular Medicine and
| | - Mayumi Ishihara
- Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia 30602
| | - Dustin R Middleton
- From the Department of Biochemistry and Molecular Biology, Center for Molecular Medicine and
| | - Michael Tiemeyer
- Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia 30602
| | - Fikri Y Avci
- From the Department of Biochemistry and Molecular Biology, Center for Molecular Medicine and .,Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia 30602
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185
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Yoshida S. Controlled Reactive Intermediates Enabling Facile Molecular Conjugation. BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN 2018. [DOI: 10.1246/bcsj.20180104] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Affiliation(s)
- Suguru Yoshida
- Laboratory of Chemical Bioscience, Institute of Biomaterials and Bioengineering, Tokyo Medical and Dental University (TMDU), 2-3-10 Kanda-Surugadai, Chiyoda-ku, Tokyo 101-0062, Japan
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186
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Tera M, Glasauer SMK, Luedtke NW. In Vivo Incorporation of Azide Groups into DNA by Using Membrane-Permeable Nucleotide Triesters. Chembiochem 2018; 19:1939-1943. [PMID: 29953711 DOI: 10.1002/cbic.201800351] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2018] [Indexed: 12/27/2022]
Abstract
Metabolic incorporation of bioorthogonal functional groups into cellular nucleic acids can be impeded by insufficient phosphorylation of nucleosides. Previous studies found that 5azidomethyl-2'-deoxyuridine (AmdU) was incorporated into the DNA of HeLa cells expressing a low-fidelity thymidine kinase, but not by wild-type HeLa cells. Here we report that membrane-permeable phosphotriester derivatives of AmdU can exhibit enhanced incorporation into the DNA of wild-type cells and animals. AmdU monophosphate derivatives bearing either 5'-bispivaloyloxymethyl (POM), 5'-bis-(4-acetoxybenzyl) (AB), or "Protide" protective groups were used to mask the phosphate group of AmdU prior to its entry into cells. The POM derivative "POM-AmdU" exhibited better chemical stability, greater metabolic incorporation efficiency, and lower toxicity than "AB-AmdU". Remarkably, the addition of POM-AmdU to the water of zebrafish larvae enabled the biosynthesis of azide-modified DNA throughout the body.
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Affiliation(s)
- Masayuki Tera
- Department of Chemistry, University of Zürich, Winterthurerstrasse 190, 8057, Zürich, Switzerland.,Bioorganic Research Institute, Suntory Foundation for Life Sciences, 8-1-1 Seikadai, Seikacho, Soraku, 619-0284, Kyoto, Japan
| | - Stella M K Glasauer
- Department of Chemistry, University of Zürich, Winterthurerstrasse 190, 8057, Zürich, Switzerland
| | - Nathan W Luedtke
- Department of Chemistry, University of Zürich, Winterthurerstrasse 190, 8057, Zürich, Switzerland
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187
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Wang M, McNitt CD, Wang H, Ma X, Scarry SM, Wu Z, Popik VV, Li Z. The efficiency of 18F labelling of a prostate specific membrane antigen ligand via strain-promoted azide-alkyne reaction: reaction speed versus hydrophilicity. Chem Commun (Camb) 2018; 54:7810-7813. [PMID: 29946609 DOI: 10.1039/c8cc03999b] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
Here we report the 18F labeling of a prostate specific membrane antigen (PSMA) ligand via a strain promoted oxa-dibenzocyclooctyne (ODIBO)- or bicyclo[6.1.0]nonyne (BCN)-azide reaction. Although ODIBO reacts with azide 20 fold faster than BCN, in vivo PET imaging suggests that 18F-BCN-azide-PSMA demonstrated much higher tumor uptake and a much higher tumor to background contrast.
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Affiliation(s)
- Mengzhe Wang
- Department of Radiology and Biomedical Research Imaging Center, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, USA.
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188
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Silantyeva EA, Nasir W, Carpenter J, Manahan O, Becker ML, Willits RK. Accelerated neural differentiation of mouse embryonic stem cells on aligned GYIGSR-functionalized nanofibers. Acta Biomater 2018; 75:129-139. [PMID: 29879551 PMCID: PMC6774047 DOI: 10.1016/j.actbio.2018.05.052] [Citation(s) in RCA: 31] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2018] [Revised: 05/17/2018] [Accepted: 05/30/2018] [Indexed: 12/09/2022]
Abstract
Substrates for embryonic stem cell culture are typified by poorly defined xenogenic, whole proteins or cellular components that are difficult and expensive to generate, characterize, and recapitulate. Herein, the generation of well-defined scaffolds of Gly-Tyr-Ile-Gly-Ser-Arg (GYIGSR) peptide-functionalized poly(ε-caprolactone) (PCL) aligned nanofibers are used to accelerate the neural lineage commitment and differentiation of D3 mouse embryonic stem cells (mESCs). Gene expression trends and immunocytochemistry analysis were similar to laminin-coated glass, and indicated an earlier differentiation progression than D3 mESCs on laminin. Further, GYIGSR-functionalized nanofiber substrates yielded an increased gene expression of Sox1, a neural progenitor cell marker, and Tubb3, Cdh2, Syp, neuronal cell markers, at early time points. In addition, guidance of neurites was found to parallel the fiber direction. We demonstrate the fabrication of a well-defined, xeno-free functional nanofiber scaffold and demonstrates its use as a surrogate for xenogenic and complex matrixes currently used for the neural differentiation of stem cells ex vivo. STATEMENT OF SIGNIFICANCE In this paper, we report the use of GYIGSR-functionalized poly(ε-caprolactone) aligned nanofibers as a tool to accelerate the neural lineage commitment and differentiation of D3 mouse embryonic stem cells. The results indicate that functional nanofiber substrates promote faster differentiation than laminin coated substrates. The data suggest that aligned nanofibers and post-electrospinning surface modification with bioactive species can be combined to produce translationally relevant xeno-free substrates for stem cell therapy. Future development efforts are focused on additional bioactive species that are able to function as surrogates for other xenogenic factors found in differentiation media.
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Affiliation(s)
- Elena A Silantyeva
- Department of Polymer Science, The University of Akron, Akron, OH 44325, United States
| | - Wafaa Nasir
- Biomedical Engineering, The University of Akron, Akron, OH 44325, United States
| | | | - Olivia Manahan
- Department of Polymer Science, The University of Akron, Akron, OH 44325, United States
| | - Matthew L Becker
- Department of Polymer Science, The University of Akron, Akron, OH 44325, United States; Biomedical Engineering, The University of Akron, Akron, OH 44325, United States.
| | - Rebecca K Willits
- Biomedical Engineering, The University of Akron, Akron, OH 44325, United States
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189
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Choi UB, Zhao M, White KI, Pfuetzner RA, Esquivies L, Zhou Q, Brunger AT. NSF-mediated disassembly of on- and off-pathway SNARE complexes and inhibition by complexin. eLife 2018; 7:36497. [PMID: 29985126 PMCID: PMC6130971 DOI: 10.7554/elife.36497] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2018] [Accepted: 07/06/2018] [Indexed: 12/24/2022] Open
Abstract
SNARE complex disassembly by the ATPase NSF is essential for neurotransmitter release and other membrane trafficking processes. We developed a single-molecule FRET assay to monitor repeated rounds of NSF-mediated disassembly and reassembly of individual SNARE complexes. For ternary neuronal SNARE complexes, disassembly proceeds in a single step within 100 msec. We observed short- (<0.32 s) and long-lived (≥0.32 s) disassembled states. The long-lived states represent fully disassembled SNARE complex, while the short-lived states correspond to failed disassembly or immediate reassembly. Either high ionic strength or decreased αSNAP concentration reduces the disassembly rate while increasing the frequency of short-lived states. NSF is also capable of disassembling anti-parallel ternary SNARE complexes, implicating it in quality control. Finally, complexin-1 competes with αSNAP binding to the SNARE complex; addition of complexin-1 has an effect similar to that of decreasing the αSNAP concentration, possibly differentially regulating cis and trans SNARE complexes disassembly.
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Affiliation(s)
- Ucheor B Choi
- Department of Molecular and Cellular Physiology, Stanford University, Stanford, United States.,Department of Neurology and Neurological Sciences, Stanford University, Stanford, United States.,Department of Structural Biology, Stanford University, Stanford, United States.,Department of Photon Science, Stanford University, Stanford, United States.,Howard Hughes Medical Institute, Stanford University, Stanford, United States
| | - Minglei Zhao
- Department of Biochemistry and Molecular Biology, University of Chicago, Chicago, United States
| | - K Ian White
- Department of Molecular and Cellular Physiology, Stanford University, Stanford, United States.,Department of Neurology and Neurological Sciences, Stanford University, Stanford, United States.,Department of Structural Biology, Stanford University, Stanford, United States.,Department of Photon Science, Stanford University, Stanford, United States.,Howard Hughes Medical Institute, Stanford University, Stanford, United States
| | - Richard A Pfuetzner
- Department of Molecular and Cellular Physiology, Stanford University, Stanford, United States.,Department of Neurology and Neurological Sciences, Stanford University, Stanford, United States.,Department of Structural Biology, Stanford University, Stanford, United States.,Department of Photon Science, Stanford University, Stanford, United States.,Howard Hughes Medical Institute, Stanford University, Stanford, United States
| | - Luis Esquivies
- Department of Molecular and Cellular Physiology, Stanford University, Stanford, United States.,Department of Neurology and Neurological Sciences, Stanford University, Stanford, United States.,Department of Structural Biology, Stanford University, Stanford, United States.,Department of Photon Science, Stanford University, Stanford, United States.,Howard Hughes Medical Institute, Stanford University, Stanford, United States
| | - Qiangjun Zhou
- Department of Molecular and Cellular Physiology, Stanford University, Stanford, United States.,Department of Neurology and Neurological Sciences, Stanford University, Stanford, United States.,Department of Structural Biology, Stanford University, Stanford, United States.,Department of Photon Science, Stanford University, Stanford, United States.,Howard Hughes Medical Institute, Stanford University, Stanford, United States
| | - Axel T Brunger
- Department of Molecular and Cellular Physiology, Stanford University, Stanford, United States.,Department of Neurology and Neurological Sciences, Stanford University, Stanford, United States.,Department of Structural Biology, Stanford University, Stanford, United States.,Department of Photon Science, Stanford University, Stanford, United States.,Howard Hughes Medical Institute, Stanford University, Stanford, United States
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190
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Chupakhin EG, Krasavin MY. Achievements in the synthesis of cyclooctynes for ring strain-promoted [3+2] azide-alkyne cycloaddition. Chem Heterocycl Compd (N Y) 2018. [DOI: 10.1007/s10593-018-2295-x] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
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191
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Nuhn L, Bolli E, Massa S, Vandenberghe I, Movahedi K, Devreese B, Van Ginderachter JA, De Geest BG. Targeting Protumoral Tumor-Associated Macrophages with Nanobody-Functionalized Nanogels through Strain Promoted Azide Alkyne Cycloaddition Ligation. Bioconjug Chem 2018; 29:2394-2405. [PMID: 29889515 DOI: 10.1021/acs.bioconjchem.8b00319] [Citation(s) in RCA: 46] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
Tumor-associated macrophages (TAMs) with high expression levels of the Macrophage Mannose Receptor (MMR, CD206) exhibit a strong angiogenic and immune suppressive activity. Thus, they are a highly attractive target in cancer immunotherapy, with the aim to modulate their protumoral behavior. Here, we introduce polymer nanogels as potential drug nanocarriers which were site-specifically decorated with a Nanobody (Nb) specific for the MMR. Using azide-functionalized RAFT chain transfer agents, they provide access to amphiphilic reactive ester block copolymers that self-assemble into micelles and are afterwards core-cross-linked toward fully hydrophilic nanogels with terminal azide groups on their surface. MMR-targeting Nb can site-selectively be functionalized with one single cyclooctyne moiety by maleimide-cysteine chemistry under mildly reducing conditions which enables successful chemoorthogonal conjugation to the nanogels. The resulting Nb-functionalized nanogels were highly efficient in targeting MMR-expressing cells and TAMs both in vitro and in vivo. We believe that these findings pave the road for targeted eradication or modulation of pro-tumoral MMRhigh TAMs.
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Affiliation(s)
- Lutz Nuhn
- Department of Pharmaceutics , Ghent University , Ottergemsesteenweg 460 , 9000 Ghent , Belgium.,Cancer Research Institute Ghent (CRIG) , Ghent University , Ottergemsesteenweg 460 , 9000 Ghent , Belgium.,Max-Planck-Institute for Polymer Research , Ackermannweg 10 , 55128 Mainz , Germany
| | - Evangelia Bolli
- Myeloid Cell Immunology Lab , VIB Center for Inflammation Research , Pleinlaan 2 , 1050 Brussels , Belgium.,Lab of Cellular and Molecular Immunology , Vrije Universiteit Brussel , Pleinlaan 2 , 1050 Brussels , Belgium
| | - Sam Massa
- Myeloid Cell Immunology Lab , VIB Center for Inflammation Research , Pleinlaan 2 , 1050 Brussels , Belgium.,Lab of Cellular and Molecular Immunology , Vrije Universiteit Brussel , Pleinlaan 2 , 1050 Brussels , Belgium
| | - Isabel Vandenberghe
- Department of Biochemistry and Microbiology , Ghent University , K. L. Ledeganckstraat 35 , 9000 Ghent , Belgium
| | - Kiavash Movahedi
- Myeloid Cell Immunology Lab , VIB Center for Inflammation Research , Pleinlaan 2 , 1050 Brussels , Belgium.,Lab of Cellular and Molecular Immunology , Vrije Universiteit Brussel , Pleinlaan 2 , 1050 Brussels , Belgium
| | - Bart Devreese
- Department of Biochemistry and Microbiology , Ghent University , K. L. Ledeganckstraat 35 , 9000 Ghent , Belgium
| | - Jo A Van Ginderachter
- Myeloid Cell Immunology Lab , VIB Center for Inflammation Research , Pleinlaan 2 , 1050 Brussels , Belgium.,Lab of Cellular and Molecular Immunology , Vrije Universiteit Brussel , Pleinlaan 2 , 1050 Brussels , Belgium
| | - Bruno G De Geest
- Department of Pharmaceutics , Ghent University , Ottergemsesteenweg 460 , 9000 Ghent , Belgium.,Cancer Research Institute Ghent (CRIG) , Ghent University , Ottergemsesteenweg 460 , 9000 Ghent , Belgium
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192
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Stéen EJL, Edem PE, Nørregaard K, Jørgensen JT, Shalgunov V, Kjaer A, Herth MM. Pretargeting in nuclear imaging and radionuclide therapy: Improving efficacy of theranostics and nanomedicines. Biomaterials 2018; 179:209-245. [PMID: 30007471 DOI: 10.1016/j.biomaterials.2018.06.021] [Citation(s) in RCA: 99] [Impact Index Per Article: 16.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2018] [Revised: 06/13/2018] [Accepted: 06/14/2018] [Indexed: 01/18/2023]
Abstract
Pretargeted nuclear imaging and radiotherapy have recently attracted increasing attention for diagnosis and treatment of cancer with nanomedicines. This is because it conceptually offers better imaging contrast and therapeutic efficiency while reducing the dose to radiosensitive tissues compared to conventional strategies. In conventional imaging and radiotherapy, a directly radiolabeled nano-sized vector is administered and allowed to accumulate in the tumor, typically on a timescale of several days. In contrast, pretargeting is based on a two-step approach. First, a tumor-accumulating vector carrying a tag is administered followed by injection of a fast clearing radiolabeled agent that rapidly recognizes the tag of the tumor-bound vector in vivo. Therefore, pretargeting circumvents the use of long-lived radionuclides that is a necessity for sufficient tumor accumulation and target-to-background ratios using conventional approaches. In this review, we give an overview of recent advances in pretargeted imaging strategies. We will critically reflect on the advantages and disadvantages of current state-of-the-art conventional imaging approaches and compare them to pretargeted strategies. We will discuss the pretargeted imaging concept and the involved chemistry. Finally, we will discuss the steps forward in respect to clinical translation, and how pretargeted strategies could be applied to improve state-of-the-art radiotherapeutic approaches.
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Affiliation(s)
- E Johanna L Stéen
- Department of Drug Design and Pharmacology, Faculty of Health and Medical Sciences, University of Copenhagen, Jagtvej 160, DK-2100 Copenhagen, Denmark; Department of Clinical Physiology, Nuclear Medicine & PET, Rigshospitalet, Blegdamsvej 9, DK-2100 Copenhagen, Denmark
| | - Patricia E Edem
- Department of Drug Design and Pharmacology, Faculty of Health and Medical Sciences, University of Copenhagen, Jagtvej 160, DK-2100 Copenhagen, Denmark; Department of Clinical Physiology, Nuclear Medicine & PET, Rigshospitalet, Blegdamsvej 9, DK-2100 Copenhagen, Denmark; Cluster for Molecular Imaging, Department of Biomedical Sciences, University of Copenhagen, Blegdamsvej 3, DK-2100 Copenhagen, Denmark
| | - Kamilla Nørregaard
- Department of Clinical Physiology, Nuclear Medicine & PET, Rigshospitalet, Blegdamsvej 9, DK-2100 Copenhagen, Denmark; Cluster for Molecular Imaging, Department of Biomedical Sciences, University of Copenhagen, Blegdamsvej 3, DK-2100 Copenhagen, Denmark
| | - Jesper T Jørgensen
- Department of Clinical Physiology, Nuclear Medicine & PET, Rigshospitalet, Blegdamsvej 9, DK-2100 Copenhagen, Denmark; Cluster for Molecular Imaging, Department of Biomedical Sciences, University of Copenhagen, Blegdamsvej 3, DK-2100 Copenhagen, Denmark
| | - Vladimir Shalgunov
- Department of Drug Design and Pharmacology, Faculty of Health and Medical Sciences, University of Copenhagen, Jagtvej 160, DK-2100 Copenhagen, Denmark
| | - Andreas Kjaer
- Department of Clinical Physiology, Nuclear Medicine & PET, Rigshospitalet, Blegdamsvej 9, DK-2100 Copenhagen, Denmark; Cluster for Molecular Imaging, Department of Biomedical Sciences, University of Copenhagen, Blegdamsvej 3, DK-2100 Copenhagen, Denmark
| | - Matthias M Herth
- Department of Drug Design and Pharmacology, Faculty of Health and Medical Sciences, University of Copenhagen, Jagtvej 160, DK-2100 Copenhagen, Denmark; Department of Clinical Physiology, Nuclear Medicine & PET, Rigshospitalet, Blegdamsvej 9, DK-2100 Copenhagen, Denmark.
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193
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Meguro T, Yoshida S, Igawa K, Tomooka K, Hosoya T. Transient Protection of Organic Azides from Click Reactions with Alkynes by Phosphazide Formation. Org Lett 2018; 20:4126-4130. [DOI: 10.1021/acs.orglett.8b01692] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Tomohiro Meguro
- Laboratory of Chemical Bioscience, Institute of Biomaterials and Bioengineering, Tokyo Medical and Dental University (TMDU), 2-3-10 Kanda-Surugadai, Chiyoda-ku, Tokyo 101-0062, Japan
| | - Suguru Yoshida
- Laboratory of Chemical Bioscience, Institute of Biomaterials and Bioengineering, Tokyo Medical and Dental University (TMDU), 2-3-10 Kanda-Surugadai, Chiyoda-ku, Tokyo 101-0062, Japan
| | - Kazunobu Igawa
- Institute for Materials Chemistry and Engineering, Kyushu University, 6-1 Kasuga-koen, Kasuga, Fukuoka 816-8580, Japan
| | - Katsuhiko Tomooka
- Institute for Materials Chemistry and Engineering, Kyushu University, 6-1 Kasuga-koen, Kasuga, Fukuoka 816-8580, Japan
| | - Takamitsu Hosoya
- Laboratory of Chemical Bioscience, Institute of Biomaterials and Bioengineering, Tokyo Medical and Dental University (TMDU), 2-3-10 Kanda-Surugadai, Chiyoda-ku, Tokyo 101-0062, Japan
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194
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Levandowski BJ, Gamache RF, Murphy JM, Houk KN. Readily Accessible Ambiphilic Cyclopentadienes for Bioorthogonal Labeling. J Am Chem Soc 2018; 140:6426-6431. [PMID: 29712423 PMCID: PMC6314806 DOI: 10.1021/jacs.8b02978] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
Abstract
A new class of bioorthogonal reagents based on the cyclopentadiene scaffold is described. The diene 6,7,8,9-tetrachloro-1,4-dioxospiro[4,4]nona-6,8-diene (a tetrachlorocyclopentadiene ketal, TCK) is ambiphilic and self-orthogonal with remarkable stability. The diene reacts rapidly with a trans-cyclooctene and an endo-bicyclononyne, but slowly with dibenzoazacyclooctyne (DIBAC), allowing for tandem labeling studies with mutually orthogonal azides that react rapidly with DIBAC. TCK analogues are synthesized in three steps from inexpensive, commercially available starting materials.
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Affiliation(s)
- Brian J. Levandowski
- Department of Chemistry and Biochemistry, University of California, Los Angeles, California 90095, United States
| | - Raymond F. Gamache
- Department of Chemistry and Biochemistry, University of California, Los Angeles, California 90095, United States
| | - Jennifer M. Murphy
- Department of Molecular and Medical Pharmacology and Crump Institute for Molecular Imaging, David Geffen School of Medicine, University of California, Los Angeles, California 90095, United States
| | - K. N. Houk
- Department of Chemistry and Biochemistry, University of California, Los Angeles, California 90095, United States
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195
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Bakkum T, van Leeuwen T, Sarris AJC, van Elsland DM, Poulcharidis D, Overkleeft HS, van Kasteren SI. Quantification of Bioorthogonal Stability in Immune Phagocytes Using Flow Cytometry Reveals Rapid Degradation of Strained Alkynes. ACS Chem Biol 2018; 13:1173-1179. [PMID: 29693370 PMCID: PMC5962927 DOI: 10.1021/acschembio.8b00355] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
![]()
One of the areas
in which bioorthogonal chemistry—chemistry
performed inside a cell or organism—has become of pivotal importance
is in the study of host–pathogen interactions. The incorporation
of bioorthogonal groups into the cell wall or proteome of intracellular
pathogens has allowed study within the endolysosomal system. However,
for the approach to be successful, the incorporated bioorthogonal
groups must be stable to chemical conditions found within these organelles,
which are some of the harshest found in metazoans: the groups are
exposed to oxidizing species, acidic conditions, and reactive thiols.
Here we present an assay that allows the assessment of the stability
of bioorthogonal groups within host cell phagosomes. Using a flow
cytometry-based assay, we have quantified the relative label stability
inside dendritic cell phagosomes of strained and unstrained alkynes.
We show that groups that were shown to be stable in other systems
were degraded by as much as 79% after maturation of the phagosome.
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Affiliation(s)
- Thomas Bakkum
- Leiden Institute of Chemistry and The Institute for Chemical Immunology, Leiden University, Einsteinweg 55, 2333 CC Leiden, The Netherlands
| | - Tyrza van Leeuwen
- Leiden Institute of Chemistry and The Institute for Chemical Immunology, Leiden University, Einsteinweg 55, 2333 CC Leiden, The Netherlands
| | - Alexi J. C. Sarris
- Leiden Institute of Chemistry and The Institute for Chemical Immunology, Leiden University, Einsteinweg 55, 2333 CC Leiden, The Netherlands
| | - Daphne M. van Elsland
- Leiden Institute of Chemistry and The Institute for Chemical Immunology, Leiden University, Einsteinweg 55, 2333 CC Leiden, The Netherlands
| | - Dimitrios Poulcharidis
- Leiden Institute of Chemistry and The Institute for Chemical Immunology, Leiden University, Einsteinweg 55, 2333 CC Leiden, The Netherlands
| | - Herman S. Overkleeft
- Leiden Institute of Chemistry and The Institute for Chemical Immunology, Leiden University, Einsteinweg 55, 2333 CC Leiden, The Netherlands
| | - Sander I. van Kasteren
- Leiden Institute of Chemistry and The Institute for Chemical Immunology, Leiden University, Einsteinweg 55, 2333 CC Leiden, The Netherlands
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196
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Riomet M, Decuypere E, Porte K, Bernard S, Plougastel L, Kolodych S, Audisio D, Taran F. Design and Synthesis of Iminosydnones for Fast Click and Release Reactions with Cycloalkynes. Chemistry 2018; 24:8535-8541. [DOI: 10.1002/chem.201801163] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2018] [Revised: 04/04/2018] [Indexed: 12/22/2022]
Affiliation(s)
- Margaux Riomet
- Service de Chimie Bio-organique et de Marquage; CEA-DRF-JOLIOT-SCBM; Université Paris-Saclay; 91191 Gif sur Yvette France
| | - Elodie Decuypere
- Service de Chimie Bio-organique et de Marquage; CEA-DRF-JOLIOT-SCBM; Université Paris-Saclay; 91191 Gif sur Yvette France
| | - Karine Porte
- Service de Chimie Bio-organique et de Marquage; CEA-DRF-JOLIOT-SCBM; Université Paris-Saclay; 91191 Gif sur Yvette France
| | - Sabrina Bernard
- Service de Chimie Bio-organique et de Marquage; CEA-DRF-JOLIOT-SCBM; Université Paris-Saclay; 91191 Gif sur Yvette France
| | - Lucie Plougastel
- Service de Chimie Bio-organique et de Marquage; CEA-DRF-JOLIOT-SCBM; Université Paris-Saclay; 91191 Gif sur Yvette France
| | - Sergii Kolodych
- Syndivia SAS; 650 Boulevard Gonthier d'Andernach 67400 Illkirch France
| | - Davide Audisio
- Service de Chimie Bio-organique et de Marquage; CEA-DRF-JOLIOT-SCBM; Université Paris-Saclay; 91191 Gif sur Yvette France
| | - Frédéric Taran
- Service de Chimie Bio-organique et de Marquage; CEA-DRF-JOLIOT-SCBM; Université Paris-Saclay; 91191 Gif sur Yvette France
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197
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Yuan B, Chen Y, Sun Y, Guo Q, Huang J, Liu J, Meng X, Yang X, Wen X, Li Z, Li L, Wang K. Enhanced Imaging of Specific Cell-Surface Glycosylation Based on Multi-FRET. Anal Chem 2018; 90:6131-6137. [PMID: 29696967 DOI: 10.1021/acs.analchem.8b00424] [Citation(s) in RCA: 31] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
Cell-surface glycosylation contains abundant biological information that reflects cell physiological state, and it is of great value to image cell-surface glycosylation to elucidate its functions. Here we present a hybridization chain reaction (HCR)-based multifluorescence resonance energy transfer (multi-FRET) method for specific imaging of cell-surface glycosylation. By installing donors through metabolic glycan labeling and acceptors through aptamer-tethered nanoassemblies on the same glycoconjugate, intramolecular multi-FRET occurs due to near donor-acceptor distance. Benefiting from amplified effect and spatial flexibility of the HCR nanoassemblies, enhanced multi-FRET imaging of specific cell-surface glycosylation can be obtained. With this HCR-based multi-FRET method, we achieved obvious contrast in imaging of protein-specific GalNAcylation on 7211 cell surfaces. In addition, we demonstrated the general applicability of this method by visualizing the protein-specific sialylation on CEM cell surfaces. Furthermore, the expression changes of CEM cell-surface protein-specific sialylation under drug treatment was accurately monitored. This developed imaging method may provide a powerful tool in researching glycosylation functions, discovering biomarkers, and screening drugs.
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Affiliation(s)
- Baoyin Yuan
- State Key Laboratory of Chemo/Biosensing and Chemometrics, College of Biology, College of Chemistry and Chemical Engineering , Hunan University, Key Laboratory for Bio-Nanotechnology and Molecular Engineering of Hunan Province , Changsha 410082 , China
| | - Yuanyuan Chen
- State Key Laboratory of Chemo/Biosensing and Chemometrics, College of Biology, College of Chemistry and Chemical Engineering , Hunan University, Key Laboratory for Bio-Nanotechnology and Molecular Engineering of Hunan Province , Changsha 410082 , China
| | - Yuqiong Sun
- State Key Laboratory of Chemo/Biosensing and Chemometrics, College of Biology, College of Chemistry and Chemical Engineering , Hunan University, Key Laboratory for Bio-Nanotechnology and Molecular Engineering of Hunan Province , Changsha 410082 , China
| | - Qiuping Guo
- State Key Laboratory of Chemo/Biosensing and Chemometrics, College of Biology, College of Chemistry and Chemical Engineering , Hunan University, Key Laboratory for Bio-Nanotechnology and Molecular Engineering of Hunan Province , Changsha 410082 , China
| | - Jin Huang
- State Key Laboratory of Chemo/Biosensing and Chemometrics, College of Biology, College of Chemistry and Chemical Engineering , Hunan University, Key Laboratory for Bio-Nanotechnology and Molecular Engineering of Hunan Province , Changsha 410082 , China
| | - Jianbo Liu
- State Key Laboratory of Chemo/Biosensing and Chemometrics, College of Biology, College of Chemistry and Chemical Engineering , Hunan University, Key Laboratory for Bio-Nanotechnology and Molecular Engineering of Hunan Province , Changsha 410082 , China
| | - Xiangxian Meng
- State Key Laboratory of Chemo/Biosensing and Chemometrics, College of Biology, College of Chemistry and Chemical Engineering , Hunan University, Key Laboratory for Bio-Nanotechnology and Molecular Engineering of Hunan Province , Changsha 410082 , China
| | - Xiaohai Yang
- State Key Laboratory of Chemo/Biosensing and Chemometrics, College of Biology, College of Chemistry and Chemical Engineering , Hunan University, Key Laboratory for Bio-Nanotechnology and Molecular Engineering of Hunan Province , Changsha 410082 , China
| | - Xiaohong Wen
- State Key Laboratory of Chemo/Biosensing and Chemometrics, College of Biology, College of Chemistry and Chemical Engineering , Hunan University, Key Laboratory for Bio-Nanotechnology and Molecular Engineering of Hunan Province , Changsha 410082 , China
| | - Zenghui Li
- State Key Laboratory of Chemo/Biosensing and Chemometrics, College of Biology, College of Chemistry and Chemical Engineering , Hunan University, Key Laboratory for Bio-Nanotechnology and Molecular Engineering of Hunan Province , Changsha 410082 , China
| | - Lie Li
- State Key Laboratory of Chemo/Biosensing and Chemometrics, College of Biology, College of Chemistry and Chemical Engineering , Hunan University, Key Laboratory for Bio-Nanotechnology and Molecular Engineering of Hunan Province , Changsha 410082 , China
| | - Kemin Wang
- State Key Laboratory of Chemo/Biosensing and Chemometrics, College of Biology, College of Chemistry and Chemical Engineering , Hunan University, Key Laboratory for Bio-Nanotechnology and Molecular Engineering of Hunan Province , Changsha 410082 , China
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198
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199
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Yoshida S, Kanno K, Kii I, Misawa Y, Hagiwara M, Hosoya T. Convergent synthesis of trifunctional molecules by three sequential azido-type-selective cycloadditions. Chem Commun (Camb) 2018. [PMID: 29527608 DOI: 10.1039/c8cc01195h] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
A facile strategy for the synthesis of trifunctional molecules involving three sequential selective triazole-forming reactions is proposed. This method exploits three kinds of mechanistically different azido-type-selective cycloadditions. Three different azidophiles could be efficiently connected to a triazido platform molecule with three types of azido groups in a consecutive manner, which rendered a practical trifunctional molecule readily available.
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Affiliation(s)
- Suguru Yoshida
- Laboratory of Chemical Bioscience, Institute of Biomaterials and Bioengineering, Tokyo Medical and Dental University (TMDU), 2-3-10 Kanda-Surugadai, Chiyoda-ku, Tokyo 101-0062, Japan.
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200
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Yip AMH, Lo KKW. Luminescent rhenium(I), ruthenium(II), and iridium(III) polypyridine complexes containing a poly(ethylene glycol) pendant or bioorthogonal reaction group as biological probes and photocytotoxic agents. Coord Chem Rev 2018. [DOI: 10.1016/j.ccr.2018.01.021] [Citation(s) in RCA: 88] [Impact Index Per Article: 14.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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