151
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Ward AJW, Kent MIA, Webster MM. Social Recognition and Social Attraction in Group-Living Fishes. Front Ecol Evol 2020. [DOI: 10.3389/fevo.2020.00015] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023] Open
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152
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Simmonds SE, Fritts‐Penniman AL, Cheng SH, Mahardika GN, Barber PH. Genomic signatures of host-associated divergence and adaptation in a coral-eating snail, Coralliophila violacea (Kiener, 1836). Ecol Evol 2020; 10:1817-1837. [PMID: 32128119 PMCID: PMC7042750 DOI: 10.1002/ece3.5977] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2019] [Revised: 11/25/2019] [Accepted: 12/06/2019] [Indexed: 12/31/2022] Open
Abstract
The fluid nature of the ocean, combined with planktonic dispersal of marine larvae, lowers physical barriers to gene flow. However, divergence can still occur despite gene flow if strong selection acts on populations occupying different ecological niches. Here, we examined the population genomics of an ectoparasitic snail, Coralliophila violacea (Kiener 1836), that specializes on Porites corals in the Indo-Pacific. Previous genetic analyses revealed two sympatric lineages associated with different coral hosts. In this study, we examined the mechanisms promoting and maintaining the snails' adaptation to their coral hosts. Genome-wide single nucleotide polymorphism (SNP) data from type II restriction site-associated DNA (2b-RAD) sequencing revealed two differentiated clusters of C. violacea that were largely concordant with coral host, consistent with previous genetic results. However, the presence of some admixed genotypes indicates gene flow from one lineage to the other. Combined, these results suggest that differentiation between host-associated lineages of C. violacea is occurring in the face of ongoing gene flow, requiring strong selection. Indeed, 2.7% of all SNP loci were outlier loci (73/2,718), indicative of divergence with gene flow, driven by adaptation of each C. violacea lineage to their specific coral hosts.
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Affiliation(s)
- Sara E. Simmonds
- Department of Ecology and Evolutionary BiologyUniversity of California Los AngelesLos AngelesCAUSA
| | | | - Samantha H. Cheng
- Department of Ecology and Evolutionary BiologyUniversity of California Los AngelesLos AngelesCAUSA
- Center for Biodiversity and ConservationAmerican Museum of Natural HistoryNew YorkNYUSA
| | - Gusti Ngurah Mahardika
- Animal Biomedical and Molecular Biology LaboratoryFaculty of Veterinary MedicineUdayana University BaliDenpasarIndonesia
| | - Paul H. Barber
- Department of Ecology and Evolutionary BiologyUniversity of California Los AngelesLos AngelesCAUSA
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153
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Adrian-Kalchhauser I, Blomberg A, Larsson T, Musilova Z, Peart CR, Pippel M, Solbakken MH, Suurväli J, Walser JC, Wilson JY, Alm Rosenblad M, Burguera D, Gutnik S, Michiels N, Töpel M, Pankov K, Schloissnig S, Winkler S. The round goby genome provides insights into mechanisms that may facilitate biological invasions. BMC Biol 2020; 18:11. [PMID: 31992286 PMCID: PMC6988351 DOI: 10.1186/s12915-019-0731-8] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2019] [Accepted: 12/13/2019] [Indexed: 12/12/2022] Open
Abstract
Background The invasive benthic round goby (Neogobius melanostomus) is the most successful temperate invasive fish and has spread in aquatic ecosystems on both sides of the Atlantic. Invasive species constitute powerful in situ experimental systems to study fast adaptation and directional selection on short ecological timescales and present promising case studies to understand factors involved the impressive ability of some species to colonize novel environments. We seize the unique opportunity presented by the round goby invasion to study genomic substrates potentially involved in colonization success. Results We report a highly contiguous long-read-based genome and analyze gene families that we hypothesize to relate to the ability of these fish to deal with novel environments. The analyses provide novel insights from the large evolutionary scale to the small species-specific scale. We describe expansions in specific cytochrome P450 enzymes, a remarkably diverse innate immune system, an ancient duplication in red light vision accompanied by red skin fluorescence, evolutionary patterns of epigenetic regulators, and the presence of osmoregulatory genes that may have contributed to the round goby’s capacity to invade cold and salty waters. A recurring theme across all analyzed gene families is gene expansions. Conclusions The expanded innate immune system of round goby may potentially contribute to its ability to colonize novel areas. Since other gene families also feature copy number expansions in the round goby, and since other Gobiidae also feature fascinating environmental adaptations and are excellent colonizers, further long-read genome approaches across the goby family may reveal whether gene copy number expansions are more generally related to the ability to conquer new habitats in Gobiidae or in fish. Electronic supplementary material The online version of this article (10.1186/s12915-019-0731-8) contains supplementary material, which is available to authorized users.
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Affiliation(s)
- Irene Adrian-Kalchhauser
- Program Man-Society-Environment, Department of Environmental Sciences, University of Basel, Vesalgasse 1, 4051, Basel, Switzerland. .,University of Bern, Institute for Fish and Wildlife Health, Länggassstrasse 122, 3012, Bern, Austria.
| | - Anders Blomberg
- Department of Chemistry and Molecular Biology, University of Gothenburg, Medicinaregatan 9C, 41390, Gothenburg, Sweden
| | - Tomas Larsson
- Department of Marine Sciences, University of Gothenburg, Medicinaregatan 9C, 41390, Gothenburg, Sweden
| | - Zuzana Musilova
- Department of Zoology, Charles University, Vinicna 7, 12844, Prague, Czech Republic
| | - Claire R Peart
- Division of Evolutionary Biology, Faculty of Biology, Ludwig-Maximilians-Universität München, Grosshaderner Strasse 2, 82152 Planegg-, Martinsried, Germany
| | - Martin Pippel
- Max Planck Institute of Molecular Cell Biology and Genetics, Pfotenhauerstrasse 108, 01307, Dresden, Germany
| | - Monica Hongroe Solbakken
- Centre for Ecological and Evolutionary Synthesis, University of Oslo, Blindernveien 31, 0371, Oslo, Norway
| | - Jaanus Suurväli
- Institute for Genetics, University of Cologne, Zülpicher Strasse 47a, 50674, Köln, Germany
| | - Jean-Claude Walser
- Genetic Diversity Centre, ETH, Universitätsstrasse 16, 8092, Zurich, Switzerland
| | - Joanna Yvonne Wilson
- Department of Biology, McMaster University, 1280 Main Street West, Hamilton, ON, Canada
| | - Magnus Alm Rosenblad
- Department of Chemistry and Molecular Biology, University of Gothenburg, Medicinaregatan 9C, 41390, Gothenburg, Sweden.,NBIS Bioinformatics Infrastructure for Life Sciences, University of Gothenburg, Medicinaregatan 9C, 41390, Gothenburg, Sweden
| | - Demian Burguera
- Department of Zoology, Charles University, Vinicna 7, 12844, Prague, Czech Republic
| | - Silvia Gutnik
- Biocenter, University of Basel, Klingelbergstrasse 50/70, 4056, Basel, Switzerland
| | - Nico Michiels
- Institute of Evolution and Ecology, University of Tuebingen, Auf der Morgenstelle 28, 72076, Tübingen, Germany
| | - Mats Töpel
- University of Bern, Institute for Fish and Wildlife Health, Länggassstrasse 122, 3012, Bern, Austria
| | - Kirill Pankov
- Department of Biology, McMaster University, 1280 Main Street West, Hamilton, ON, Canada
| | - Siegfried Schloissnig
- Research Institute of Molecular Pathology (IMP), Vienna BioCenter (VBC), 1030, Vienna, Austria
| | - Sylke Winkler
- Max Planck Institute of Molecular Cell Biology and Genetics, Pfotenhauerstrasse 108, 01307, Dresden, Germany
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154
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Abstract
Acoustic communication is crucial to humans and many other tetrapods, including birds, frogs, crocodilians, and mammals. However, large-scale patterns in its evolution are largely unstudied. Here, we address several fundamental questions about the origins of acoustic communication in terrestrial vertebrates (tetrapods), using phylogenetic methods. We show that origins of acoustic communication are significantly associated with nocturnal activity. We find that acoustic communication does not increase diversification rates, a surprising result given the many speciation-focused studies of frog calls and bird songs. We also demonstrate that the presence of acoustic communication is strongly conserved over time. Finally, we find that acoustic communication evolved independently in most major tetrapod groups, often with remarkably ancient origins (~100-200 million years ago). Overall, we show that the role of ecology in shaping signal evolution applies to surprisingly deep timescales, whereas the role of signal evolution in diversification may not.
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Affiliation(s)
- Zhuo Chen
- College of Life Sciences, Henan Normal University, 453007, Xinxiang, Henan Province, China
- Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ, 85721-0088, USA
| | - John J Wiens
- Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ, 85721-0088, USA.
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155
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Ames EM, Gade MR, Nieman CL, Wright JR, Tonra CM, Marroquin CM, Tutterow AM, Gray SM. Striving for population-level conservation: integrating physiology across the biological hierarchy. CONSERVATION PHYSIOLOGY 2020; 8:coaa019. [PMID: 32274066 PMCID: PMC7125044 DOI: 10.1093/conphys/coaa019] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/08/2019] [Revised: 02/07/2020] [Accepted: 02/13/2020] [Indexed: 05/05/2023]
Abstract
The field of conservation physiology strives to achieve conservation goals by revealing physiological mechanisms that drive population declines in the face of human-induced rapid environmental change (HIREC) and has informed many successful conservation actions. However, many studies still struggle to explicitly link individual physiological measures to impacts across the biological hierarchy (to population and ecosystem levels) and instead rely on a 'black box' of assumptions to scale up results for conservation implications. Here, we highlight some examples of studies that were successful in scaling beyond the individual level, including two case studies of well-researched species, and using other studies we highlight challenges and future opportunities to increase the impact of research by scaling up the biological hierarchy. We first examine studies that use individual physiological measures to scale up to population-level impacts and discuss several emerging fields that have made significant steps toward addressing the gap between individual-based and demographic studies, such as macrophysiology and landscape physiology. Next, we examine how future studies can scale from population or species-level to community- and ecosystem-level impacts and discuss avenues of research that can lead to conservation implications at the ecosystem level, such as abiotic gradients and interspecific interactions. In the process, we review methods that researchers can use to make links across the biological hierarchy, including crossing disciplinary boundaries, collaboration and data sharing, spatial modelling and incorporating multiple markers (e.g. physiological, behavioural or demographic) into their research. We recommend future studies incorporating tools that consider the diversity of 'landscapes' experienced by animals at higher levels of the biological hierarchy, will make more effective contributions to conservation and management decisions.
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Affiliation(s)
- Elizabeth M Ames
- School of the Environment and Natural Resources, The Ohio State University, 2021 Coffey Road, Columbus, OH 43210, USA
| | - Meaghan R Gade
- School of the Environment and Natural Resources, The Ohio State University, 2021 Coffey Road, Columbus, OH 43210, USA
| | - Chelsey L Nieman
- School of the Environment and Natural Resources, The Ohio State University, 2021 Coffey Road, Columbus, OH 43210, USA
| | - James R Wright
- School of the Environment and Natural Resources, The Ohio State University, 2021 Coffey Road, Columbus, OH 43210, USA
| | - Christopher M Tonra
- School of the Environment and Natural Resources, The Ohio State University, 2021 Coffey Road, Columbus, OH 43210, USA
| | - Cynthia M Marroquin
- Departmant of Evolution, Ecology and Organismal Biology, The Ohio State University, 318 W. 12th Ave., Columbus, OH 43210, USA
| | - Annalee M Tutterow
- School of the Environment and Natural Resources, The Ohio State University, 2021 Coffey Road, Columbus, OH 43210, USA
| | - Suzanne M Gray
- School of the Environment and Natural Resources, The Ohio State University, 2021 Coffey Road, Columbus, OH 43210, USA
- Corresponding author: School of the Environment and Natural Resources, The Ohio State University, 2021 Coffey Road, Columbus, OH 43210, USA. Tel: 614-292-4643.
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156
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Wright DS, van Eijk R, Schuart L, Seehausen O, Groothuis TGG, Maan ME. Testing sensory drive speciation in cichlid fish: Linking light conditions to opsin expression, opsin genotype and female mate preference. J Evol Biol 2019; 33:422-434. [PMID: 31820840 PMCID: PMC7187155 DOI: 10.1111/jeb.13577] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2019] [Accepted: 12/04/2019] [Indexed: 12/15/2022]
Abstract
Ecological speciation is facilitated when divergent adaptation has direct effects on selective mating. Divergent sensory adaptation could generate such direct effects, by mediating both ecological performance and mate selection. In aquatic environments, light attenuation creates distinct photic environments, generating divergent selection on visual systems. Consequently, divergent sensory drive has been implicated in the diversification of several fish species. Here, we experimentally test whether divergent visual adaptation explains the divergence of mate preferences in Haplochromine cichlids. Blue and red Pundamilia co‐occur across south‐eastern Lake Victoria. They inhabit different photic conditions and have distinct visual system properties. Previously, we documented that rearing fish under different light conditions influences female preference for blue versus red males. Here, we examine to what extent variation in female mate preference can be explained by variation in visual system properties, testing the causal link between visual perception and preference. We find that our experimental light manipulations influence opsin expression, suggesting a potential role for phenotypic plasticity in optimizing visual performance. However, variation in opsin expression does not explain species differences in female preference. Instead, female preference covaries with allelic variation in the long‐wavelength‐sensitive opsin gene (LWS), when assessed under broad‐spectrum light. Taken together, our study presents evidence for environmental plasticity in opsin expression and confirms the important role of colour perception in shaping female mate preferences in Pundamilia. However, it does not constitute unequivocal evidence for the direct effects of visual adaptation on assortative mating.
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Affiliation(s)
- Daniel Shane Wright
- Groningen Institute for Evolutionary Life Sciences (GELIFES), University of Groningen, Groningen, The Netherlands
| | - Roel van Eijk
- Groningen Institute for Evolutionary Life Sciences (GELIFES), University of Groningen, Groningen, The Netherlands
| | - Lisa Schuart
- Groningen Institute for Evolutionary Life Sciences (GELIFES), University of Groningen, Groningen, The Netherlands.,University of Applied Sciences van Hall Larenstein, Leeuwarden, The Netherlands
| | - Ole Seehausen
- Institute of Ecology & Evolution, University of Bern, Bern, Switzerland.,Department Fish Ecology & Evolution, Eawag, Center for Ecology, Evolution and Biogeochemistry, Kastanienbaum, Switzerland
| | - Ton G G Groothuis
- Groningen Institute for Evolutionary Life Sciences (GELIFES), University of Groningen, Groningen, The Netherlands
| | - Martine E Maan
- Groningen Institute for Evolutionary Life Sciences (GELIFES), University of Groningen, Groningen, The Netherlands.,Institute of Ecology & Evolution, University of Bern, Bern, Switzerland.,Department Fish Ecology & Evolution, Eawag, Center for Ecology, Evolution and Biogeochemistry, Kastanienbaum, Switzerland
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157
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Choi N, Bern M, Elias DO, McGinley RH, Rosenthal MF, Hebets EA. A mismatch between signal transmission efficacy and mating success calls into question the function of complex signals. Anim Behav 2019. [DOI: 10.1016/j.anbehav.2019.09.017] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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158
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From sympatry to parapatry: a rapid change in the spatial context of incipient allochronic speciation. Evol Ecol 2019. [DOI: 10.1007/s10682-019-10021-4] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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159
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Ribardière A, Pabion E, Coudret J, Daguin-Thiébaut C, Houbin C, Loisel S, Henry S, Broquet T. Sexual isolation with and without ecological isolation in marine isopods Jaera albifrons and J. praehirsuta. J Evol Biol 2019; 34:33-48. [PMID: 31631475 DOI: 10.1111/jeb.13559] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2019] [Revised: 09/26/2019] [Accepted: 10/17/2019] [Indexed: 01/26/2023]
Abstract
Sexual barriers associated with mate choice are often found to be associated with some level of ecological isolation between species. The independence and relative strength of sexual isolation are thus difficult to assess. Here, we take advantage of a pair of marine isopod species (Jaera albifrons and J. praehirsuta) that show sexual isolation and coexist in populations where they share the same microhabitat or not (i.e. without or with ecological isolation). We estimated the strength of sexual isolation between J. albifrons and J. praehirsuta using no-choice trials and a multiple-choice experimental population. We found that sexual isolation is strong in both the presence and the absence of ecological isolation, but that it is asymmetric and fails to prevent interspecific gene flow entirely. First-generation intrinsic post-zygotic barriers were low, and there was no sexual isolation within J. praehirsuta across habitats. The J. albifrons/J. praehirsuta species pair thus provides an example where the role of sexual isolation as a barrier to gene flow (a) does not depend upon current ecological isolation, (b) seems to have evolved independently of local ecological conditions, but (c) is insufficient to complete speciation entirely on its own.
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Affiliation(s)
- Ambre Ribardière
- UMR 7144, Station Biologique de Roscoff, CNRS & Sorbonne Université, Roscoff, France
| | - Elsa Pabion
- UMR 7144, Station Biologique de Roscoff, CNRS & Sorbonne Université, Roscoff, France
| | - Jérôme Coudret
- UMR 7144, Station Biologique de Roscoff, CNRS & Sorbonne Université, Roscoff, France
| | | | - Céline Houbin
- UMR 7144, Station Biologique de Roscoff, CNRS & Sorbonne Université, Roscoff, France.,FR2424, Station Biologique de Roscoff, CNRS & Sorbonne Université, Roscoff, France
| | - Stéphane Loisel
- UMR 7144, Station Biologique de Roscoff, CNRS & Sorbonne Université, Roscoff, France
| | - Sébastien Henry
- UMR 7144, Station Biologique de Roscoff, CNRS & Sorbonne Université, Roscoff, France.,FR2424, Station Biologique de Roscoff, CNRS & Sorbonne Université, Roscoff, France
| | - Thomas Broquet
- UMR 7144, Station Biologique de Roscoff, CNRS & Sorbonne Université, Roscoff, France
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160
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Lindsay WR, Andersson S, Bererhi B, Höglund J, Johnsen A, Kvarnemo C, Leder EH, Lifjeld JT, Ninnes CE, Olsson M, Parker GA, Pizzari T, Qvarnström A, Safran RJ, Svensson O, Edwards SV. Endless forms of sexual selection. PeerJ 2019; 7:e7988. [PMID: 31720113 PMCID: PMC6839514 DOI: 10.7717/peerj.7988] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2019] [Accepted: 10/04/2019] [Indexed: 12/11/2022] Open
Abstract
In recent years, the field of sexual selection has exploded, with advances in theoretical and empirical research complementing each other in exciting ways. This perspective piece is the product of a "stock-taking" workshop on sexual selection and sexual conflict. Our aim is to identify and deliberate on outstanding questions and to stimulate discussion rather than provide a comprehensive overview of the entire field. These questions are organized into four thematic sections we deem essential to the field. First we focus on the evolution of mate choice and mating systems. Variation in mate quality can generate both competition and choice in the opposite sex, with implications for the evolution of mating systems. Limitations on mate choice may dictate the importance of direct vs. indirect benefits in mating decisions and consequently, mating systems, especially with regard to polyandry. Second, we focus on how sender and receiver mechanisms shape signal design. Mediation of honest signal content likely depends on integration of temporally variable social and physiological costs that are challenging to measure. We view the neuroethology of sensory and cognitive receiver biases as the main key to signal form and the 'aesthetic sense' proposed by Darwin. Since a receiver bias is sufficient to both initiate and drive ornament or armament exaggeration, without a genetically correlated or even coevolving receiver, this may be the appropriate 'null model' of sexual selection. Thirdly, we focus on the genetic architecture of sexually selected traits. Despite advances in modern molecular techniques, the number and identity of genes underlying performance, display and secondary sexual traits remains largely unknown. In-depth investigations into the genetic basis of sexual dimorphism in the context of long-term field studies will reveal constraints and trajectories of sexually selected trait evolution. Finally, we focus on sexual selection and conflict as drivers of speciation. Population divergence and speciation are often influenced by an interplay between sexual and natural selection. The extent to which sexual selection promotes or counteracts population divergence may vary depending on the genetic architecture of traits as well as the covariance between mating competition and local adaptation. Additionally, post-copulatory processes, such as selection against heterospecific sperm, may influence the importance of sexual selection in speciation. We propose that efforts to resolve these four themes can catalyze conceptual progress in the field of sexual selection, and we offer potential avenues of research to advance this progress.
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Affiliation(s)
- Willow R. Lindsay
- Department of Biological and Environmental Sciences, University of Gothenburg, Göteborg, Sweden
| | - Staffan Andersson
- Department of Biological and Environmental Sciences, University of Gothenburg, Göteborg, Sweden
| | - Badreddine Bererhi
- Department of Biological and Environmental Sciences, University of Gothenburg, Göteborg, Sweden
| | - Jacob Höglund
- Department of Ecology and Genetics, Uppsala University, Uppsala, Sweden
| | - Arild Johnsen
- Natural History Museum, University of Oslo, Oslo, Norway
| | - Charlotta Kvarnemo
- Department of Biological and Environmental Sciences, University of Gothenburg, Göteborg, Sweden
| | - Erica H. Leder
- Natural History Museum, University of Oslo, Oslo, Norway
| | - Jan T. Lifjeld
- Natural History Museum, University of Oslo, Oslo, Norway
| | - Calum E. Ninnes
- Department of Biological and Environmental Sciences, University of Gothenburg, Göteborg, Sweden
- Department of Entomology and Nematology, University of Florida, Gainesville, FL, United States of America
| | - Mats Olsson
- Department of Biological and Environmental Sciences, University of Gothenburg, Göteborg, Sweden
| | - Geoff A. Parker
- Institute of Integrative Biology, University of Liverpool, Liverpool, United Kingdom
| | - Tommaso Pizzari
- Department of Zoology, Edward Grey Institute, University of Oxford, Oxford, United Kingdom
| | - Anna Qvarnström
- Department of Ecology and Genetics, Uppsala University, Uppsala, Sweden
| | - Rebecca J. Safran
- Department of Ecology and Evolutionary Biology, University of Colorado, Boulder, CO, United States of America
| | - Ola Svensson
- School of Natural Sciences, Technology and Environmental Studies, Södertörn University, Huddinge, Sweden
| | - Scott V. Edwards
- Department of Organismic and Evolutionary Biology and Museum of Comparative Zoology, Harvard University, Cambridge, MA, United States of America
- Gothenburg Centre for Advanced Studies in Science and Technology, Chalmers University of Technology, Göteborg, Sweden
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161
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Baldo L, Riera JL, Salzburger W, Barluenga M. Phylogeography and Ecological Niche Shape the Cichlid Fish Gut Microbiota in Central American and African Lakes. Front Microbiol 2019; 10:2372. [PMID: 31681230 PMCID: PMC6803461 DOI: 10.3389/fmicb.2019.02372] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2019] [Accepted: 09/30/2019] [Indexed: 01/01/2023] Open
Abstract
Cichlid fishes, with their repeated colonization of lakes and subsequent radiations at different scales of phylogenetic and ecological diversification, offer an excellent model system to understand the factors shaping the host-gut microbiota association in nature. Here, we characterized the gut microbiota of the Amphilophus species complex from Central America (known as the Midas cichlid complex), encompassing 158 wild specimens (13 species) collected from seven Nicaraguan lakes, and combined these data with previously published data from two African lakes (spanning 29 species). Our aim was to comprehensively explore trends in microbiota variation and persistence along the large spatial and temporal scales of cichlid diversification (from the oldest radiation in L. Tanganyika, 9-12 My old, to young ones in Nicaraguan crater lakes, <0.5 My old), in allopatry and sympatry (within and across lakes), and across the range of dietary niches (from highly specialized to generalist feeders). Despite their extraordinary diversity, cichlids shared a remarkably conserved microbial taxonomic profile, which argues for a primary role of the host genetics in the assembly and maintenance of these microbial communities. Within this partly constrained microbiota profile, geographic isolation (continent and lake) represented the first level of discrimination. For the Midas cichlid, a partial congruency was found between host microbiota and genetic distances, suggesting that microbial communities have partly diversified along their cichlid phylogeographic history of crater lake colonization. In sympatry (within lakes), the young and poorly ecologically diversified cichlid assemblages of Central American lakes display largely unresolved gut microbiotas (in terms of both alpha and beta diversities), whereas the phylogenetically and ecologically diverse species found in African lakes showed greater microbial interspecific diversity. This pattern largely points to the level of habitat segregation, trophic niche overlap, and reproductive barriers as major modulators of the gut microbiota connectivity among sympatric species.
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Affiliation(s)
- Laura Baldo
- Department of Evolutionary Biology, Ecology and Environmental Sciences, University of Barcelona, Barcelona, Spain
- Institute for Research on Biodiversity (IRBio), University of Barcelona, Barcelona, Spain
| | - Joan Lluís Riera
- Department of Evolutionary Biology, Ecology and Environmental Sciences, University of Barcelona, Barcelona, Spain
| | | | - Marta Barluenga
- Department of Biodiversity and Evolutionary Biology, Museo Nacional de Ciencias Naturales, CSIC, Madrid, Spain
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162
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Janicke T, Marie-Orleach L, Aubier TG, Perrier C, Morrow EH. Assortative Mating in Animals and Its Role for Speciation. Am Nat 2019; 194:865-875. [PMID: 31738105 DOI: 10.1086/705825] [Citation(s) in RCA: 29] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
Abstract
Evolutionary theory predicts that positive assortative mating-the tendency of similar individuals to mate with each other-plays a key role for speciation by generating reproductive isolation between diverging populations. However, comprehensive tests for an effect of assortative mating on species richness at the macroevolutionary scale are lacking. We used a meta-analytic approach to test the hypothesis that the strength of assortative mating within populations is positively related to species richness across a broad range of animal taxa. Specifically, we ran a phylogenetically independent meta-analysis using an extensive database of 1,447 effect sizes for the strength of assortative mating, encompassing 307 species from 130 families and 14 classes. Our results suggest that there is no relationship between the strength of assortative mating and species richness across and within major taxonomic groups and trait categories. Moreover, our analysis confirms an earlier finding that animals typically mate assortatively (global Pearson correlation coefficient: r=0.36; 95% confidence interval: 0.19-0.52) when accounting for phylogenetic nonindependence. We argue that future advances will rely on a better understanding of the evolutionary causes and consequences of the observed intra- and interspecific variation in the strength of assortative mating.
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163
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Musilova Z, Indermaur A, Bitja‐Nyom AR, Omelchenko D, Kłodawska M, Albergati L, Remišová K, Salzburger W. Evolution of the visual sensory system in cichlid fishes from crater lake Barombi Mbo in Cameroon. Mol Ecol 2019; 28:5010-5031. [DOI: 10.1111/mec.15217] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2019] [Revised: 08/09/2019] [Accepted: 08/13/2019] [Indexed: 01/09/2023]
Affiliation(s)
- Zuzana Musilova
- Department of Zoology Charles University in Prague Prague Czech Republic
- Zoological Institute University of Basel Basel Switzerland
| | | | - Arnold Roger Bitja‐Nyom
- Department of Biological Sciences University of Ngaoundéré Ngaoundéré Cameroon
- Department of Management of Fisheries and Aquatic Ecosystems University of Douala Douala Cameroon
| | - Dmytro Omelchenko
- Department of Zoology Charles University in Prague Prague Czech Republic
| | - Monika Kłodawska
- Department of Zoology Charles University in Prague Prague Czech Republic
| | - Lia Albergati
- Zoological Institute University of Basel Basel Switzerland
| | - Kateřina Remišová
- Department of Physiology Charles University in Prague Prague Czech Republic
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164
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Dong CM, McLean CA, Moussalli A, Stuart‐Fox D. Conserved visual sensitivities across divergent lizard lineages that differ in an ultraviolet sexual signal. Ecol Evol 2019; 9:11824-11832. [PMID: 31695890 PMCID: PMC6822044 DOI: 10.1002/ece3.5686] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2019] [Revised: 09/02/2019] [Accepted: 09/05/2019] [Indexed: 01/04/2023] Open
Abstract
The sensory drive hypothesis predicts the correlated evolution of signaling traits and sensory perception in differing environments. For visual signals, adaptive divergence in both color signals and visual sensitivities between populations may contribute to reproductive isolation and promote speciation, but this has rarely been tested or shown in terrestrial species. We tested whether opsin protein expression differs between divergent lineages of the tawny dragon (Ctenophorus decresii) that differ in the presence/absence of an ultraviolet sexual signal. We measured the expression of four retinal cone opsin genes (SWS1, SWS2, RH2, and LWS) using droplet digital PCR. We show that gene expression between lineages does not differ significantly, including the UV wavelength sensitive SWS1. We discuss these results in the context of mounting evidence that visual sensitivities are highly conserved in terrestrial systems. Multiple competing requirements may constrain divergence of visual sensitivities in response to sexual signals. Instead, signal contrast could be increased via alternative mechanisms, such as background selection. Our results contribute to a growing understanding of the roles of visual ecology, phylogeny, and behavior on visual system evolution in reptiles.
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Affiliation(s)
- Caroline M. Dong
- School of BioSciencesThe University of MelbourneParkvilleVictoriaAustralia
- Sciences DepartmentMuseums VictoriaCarltonVictoriaAustralia
| | - Claire A. McLean
- School of BioSciencesThe University of MelbourneParkvilleVictoriaAustralia
- Sciences DepartmentMuseums VictoriaCarltonVictoriaAustralia
| | | | - Devi Stuart‐Fox
- School of BioSciencesThe University of MelbourneParkvilleVictoriaAustralia
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165
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Conith MR, Conith AJ, Albertson RC. Evolution of a soft-tissue foraging adaptation in African cichlids: Roles for novelty, convergence, and constraint. Evolution 2019; 73:2072-2084. [PMID: 31418824 DOI: 10.1111/evo.13824] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2018] [Revised: 06/25/2019] [Accepted: 07/05/2019] [Indexed: 12/12/2022]
Abstract
Understanding the origins of biodiversity demands consideration of both extrinsic (e.g., ecological opportunity) and intrinsic (e.g., developmental constraint) factors. Here, we use a combination of phylogenetic and genetic tools to address the origin of novelty in African cichlids. In particular, we focus on an extreme hypertrophied snout that is structurally integrated with the upper jaw. We show that this bizarre trait has evolved independently in at least two distinct and ecologically successful cichlid clades. We find that snout dimensions are decoupled both phenotypically and genetically, which has enabled it to evolve independently in multiple directions. Further, patterns of variation among species and within a genetic mapping pedigree suggest that relative to snout length, depth is under greater genetic and/or developmental constraint. Models of evolution suggest that snout shape is under selection for feeding behavior, with snout depth being important for algae scraping and snout length for sand sifting. Indeed, the deep snout of some algivores is achieved via an expansion of the intermaxillary ligament, which is important for jaw stability and may increase feeding performance. Overall, our data imply that the evolution of exaggerated snout depth required overcoming a genetic/developmental constraint, which led to expanded ecological opportunity via foraging adaptation.
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Affiliation(s)
- Moira R Conith
- Graduate Program in Organismic and Evolutionary Biology, University of Massachusetts, Amherst, Massachusetts, 01003
| | - Andrew J Conith
- Department of Biology, University of Massachusetts, Amherst, Massachusetts, 01003
| | - R Craig Albertson
- Graduate Program in Organismic and Evolutionary Biology, University of Massachusetts, Amherst, Massachusetts, 01003.,Department of Biology, University of Massachusetts, Amherst, Massachusetts, 01003
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166
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Differential fitness effects of moonlight on plumage colour morphs in barn owls. Nat Ecol Evol 2019; 3:1331-1340. [PMID: 31477846 PMCID: PMC6728161 DOI: 10.1038/s41559-019-0967-2] [Citation(s) in RCA: 31] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2018] [Accepted: 07/24/2019] [Indexed: 11/17/2022]
Abstract
The Moon cycle exposes nocturnal life to variation in environmental light. However, whether moonlight shapes the fitness of nocturnal species with distinct colour variants remains unknown. Combining long-term monitoring, high-resolution GPS tracking, and experiments on prey, we show that barn owls (Tyto alba) with distinct plumage colourations are differently affected by moonlight. The reddest owls are less successful hunting and providing food to their offspring during moonlit nights, which associates with lower body mass and survival of the youngest nestlings and with female mates starting to lay eggs at low moonlight levels. Although moonlight should make white owls more conspicuous to prey, hunting and fitness of the whitest owls are positively or un-affected by moonlight. We experimentally show that, under full-moon conditions, white plumages trigger longer freezing times in the prey, which should facilitate prey catchability. We propose that the barn owl’s white plumage, a rare trait among nocturnal predators, exploits the known aversion of rodents to bright light, explaining why, counterintuitively, moonlight impacts less the whitest owls. Our study provides evidence for the long-suspected influence of the Moon on the evolution of colouration in nocturnal species, highlighting the importance of colour in nocturnal ecosystems.
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167
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The Cognitive Ecology of Stimulus Ambiguity: A Predator-Prey Perspective. Trends Ecol Evol 2019; 34:1048-1060. [PMID: 31416642 DOI: 10.1016/j.tree.2019.07.004] [Citation(s) in RCA: 26] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2019] [Revised: 07/01/2019] [Accepted: 07/08/2019] [Indexed: 11/22/2022]
Abstract
Organisms face the cognitive challenge of making decisions based on imperfect information. Predators and prey, in particular, are confronted with ambiguous stimuli when foraging and avoiding attacks. These challenges are accentuated by variation imposed by environmental, physiological, and cognitive factors. While the cognitive factors influencing perceived ambiguity are often assumed to be fixed, contemporary findings reveal that perceived ambiguity is instead the dynamic outcome of interactive cognitive processes. Here, we present a framework that integrates recent advances in neurophysiology and sensory ecology with a classic decision-making model, signal detection theory (SDT), to understand the cognitive mechanisms that shape perceived stimulus ambiguity in predators and prey. Since stimulus ambiguity is pervasive, the framework discussed here provides insights that extend into nonforaging contexts.
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168
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Côte J, Pilisi C, Morisseau O, Veyssière C, Perrault A, Jean S, Blanchet S, Jacquin L. Water turbidity affects melanin-based coloration in the gudgeon: a reciprocal transplant experiment. Biol J Linn Soc Lond 2019. [DOI: 10.1093/biolinnean/blz102] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
Abstract
Abstract
Human activities cause rapid eutrophication and increased water turbidity in aquatic ecosystems, but their effects on fish communication and colour signals remain of debate. In particular, melanin-based coloration in fish has been understudied, because it was believed to be less costly to display than carotenoid-based colours. Here, we measured the phenotypic divergence of melanin-based coloration in 17 populations of gudgeon (Gobio occitaniae) along a turbidity gradient. We also tested the short-term plasticity of coloration using a reciprocal transplant experiment. We found strong variability in melanin-based coloration along the turbidity gradient: interpopulation divergence in coloration was higher than predicted by genetic drift, and fish were paler with increasing levels of turbidity. Finally, a reciprocal transplant experiment revealed that fish transplanted into more turbid habitats expressed a paler melanin-based coloration, suggesting that melanin-based coloration was highly plastic in the short term. Overall, our results suggest that eutrophication in human-altered rivers can rapidly alter melanin-based coloration, with potential consequences for fish visual communication and sexual selection.
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Affiliation(s)
- Jessica Côte
- Laboratoire Evolution et Diversité Biologique EDB, Université de Toulouse; Toulouse, France
| | - Camille Pilisi
- Laboratoire Evolution et Diversité Biologique EDB, Université de Toulouse; Toulouse, France
| | - Océane Morisseau
- Laboratoire Evolution et Diversité Biologique EDB, Université de Toulouse; Toulouse, France
| | - Charlotte Veyssière
- Laboratoire Evolution et Diversité Biologique EDB, Université de Toulouse; Toulouse, France
| | - Annie Perrault
- Laboratoire EcoLab, CNRS; INPT; UPS; ENSAT, Auzeville-Tolosane, France
| | - Séverine Jean
- Laboratoire EcoLab, CNRS; INPT; UPS; ENSAT, Auzeville-Tolosane, France
| | - Simon Blanchet
- Station d’Écologie Théorique et Expérimentale SETE; Moulis, France
| | - Lisa Jacquin
- Laboratoire Evolution et Diversité Biologique EDB, Université de Toulouse; Toulouse, France
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169
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Wright DS, Meijer R, van Eijk R, Vos W, Seehausen O, Maan ME. Geographic variation in opsin expression does not align with opsin genotype in Lake Victoria cichlid populations. Ecol Evol 2019; 9:8676-8689. [PMID: 31410271 PMCID: PMC6686298 DOI: 10.1002/ece3.5411] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2019] [Revised: 05/09/2019] [Accepted: 05/19/2019] [Indexed: 12/27/2022] Open
Abstract
Sensory adaptation to the local environment can contribute to speciation. Aquatic environments are well suited for studying this process: The natural attenuation of light through water results in heterogeneous light environments, to which vision-dependent species must adapt for communication and survival. Here, we study visual adaptation in sympatric Pundamilia cichlids from southeastern Lake Victoria. Species with blue or red male nuptial coloration co-occur at many rocky islands but tend to be depth-differentiated, entailing different visual habitats, more strongly at some islands than others. Divergent visual adaptation to these environments has been implicated as a major factor in the divergence of P. pundamilia and P. nyererei, as they show consistent differentiation in the long-wavelength-sensitive visual pigment gene sequence (LWS opsin). In addition to sequence variation, variation in the opsin gene expression levels may contribute to visual adaptation. We characterized opsin gene expression and LWS genotype across Pundamilia populations inhabiting turbid and clear waters, to examine how different mechanisms of visual tuning contribute to visual adaptation. As predicted, the short-wavelength-sensitive opsin (SWS2b) was expressed exclusively in a population from clear water. Contrary to prediction however, expression levels of the other opsins were species- and island-dependent and did not align with species differences in LWS genotype. Specifically, in two locations with turbid water, the shallow-water dwelling blue species expressed more LWS and less RH2A than the deeper-dwelling red species, while the opposite pattern occurred in the two locations with clear water. Visual modeling suggests that the observed distribution of opsin expression profiles and LWS genotypes does not maximize visual performance, implying the involvement of additional visual tuning mechanisms and/or incomplete adaptation. OPEN RESEARCH BADGE This article has earned an Open Data Badge for making publicly available the digitally-shareable data necessary to reproduce the reported results. The data is available at https://hdl.handle.net/10411/I1IUUQ.
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Affiliation(s)
- Daniel Shane Wright
- Groningen Institute for Evolutionary Life Sciences (GELIFES)University of GroningenGroningenThe Netherlands
| | - Roy Meijer
- Groningen Institute for Evolutionary Life Sciences (GELIFES)University of GroningenGroningenThe Netherlands
- University of Applied Sciences van Hall LarensteinLeeuwardenThe Netherlands
| | - Roel van Eijk
- Groningen Institute for Evolutionary Life Sciences (GELIFES)University of GroningenGroningenThe Netherlands
| | - Wicher Vos
- Groningen Institute for Evolutionary Life Sciences (GELIFES)University of GroningenGroningenThe Netherlands
| | - Ole Seehausen
- Institute of Ecology & EvolutionUniversity of BernBernSwitzerland
- Department Fish Ecology & EvolutionEawag, Center for Ecology, Evolution and BiogeochemistryKastanienbaumSwitzerland
| | - Martine E. Maan
- Groningen Institute for Evolutionary Life Sciences (GELIFES)University of GroningenGroningenThe Netherlands
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170
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Alpedrinha J, R. Rodrigues L, Magalhães S, Abbott J. The virtues and limitations of exploring the eco‐evolutionary dynamics of sexually selected traits. OIKOS 2019. [DOI: 10.1111/oik.06573] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- João Alpedrinha
- cE3c: Centre for Ecology, Evolution, and Environmental Changes, Faculty of Sciences, Univ. of Lisbon Edifício C2 PT‐1749‐016 Lisboa Portugal
| | - Leonor R. Rodrigues
- cE3c: Centre for Ecology, Evolution, and Environmental Changes, Faculty of Sciences, Univ. of Lisbon Edifício C2 PT‐1749‐016 Lisboa Portugal
- Stockholm Univ Stockholm Sweden
| | - Sara Magalhães
- cE3c: Centre for Ecology, Evolution, and Environmental Changes, Faculty of Sciences, Univ. of Lisbon Edifício C2 PT‐1749‐016 Lisboa Portugal
| | - Jessica Abbott
- Biology Dept, Section for Evolutionary Ecology, Lund Univ Lund Sweden
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171
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Nieman CL, Gray SM. Visual performance impaired by elevated sedimentary and algal turbidity in walleye Sander vitreus and emerald shiner Notropis atherinoides. JOURNAL OF FISH BIOLOGY 2019; 95:186-199. [PMID: 30511351 DOI: 10.1111/jfb.13878] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/18/2018] [Accepted: 11/26/2018] [Indexed: 05/26/2023]
Abstract
The objectives of this study were to determine the effects of different forms of elevated turbidity on the visual acuity of two native Lake Erie fishes and to assess the response of fishes from different trophic levels to elevated turbidity. Additionally, the role of visual morphology (e.g., eye and optic lobe size) on visual acuity was evaluated across visual environments. Reaction distance, a behavioural proxy for measures of visual acuity, was measured for a top predator, walleye Sander vitreus and a forage fish, emerald shiner Notropis atherinoides. In both S. vitreus (n = 27) and N. atherinoides (n = 40) reaction distance across all types of turbidity (sedimentary, algal, sedimentary + algal; 20 NTU) was approximately 50% lower relative to the clear treatment. Reaction distance was further reduced in algal compared with sedimentary turbidity for wild-caught S. vitreus. Eye and brain morphology also influenced reaction distance across turbidity treatments, such that larger relative eye and brain metrics were positively correlated with reaction distance. This study provides evidence for disrupted visual acuity as a potential mechanism underlying fish responses, such as decreased foraging efficiency, to increased turbidity and further indicates that algal turbidity will probably be more detrimental to visual processes than sedimentary turbidity. With the increasing occurrence and severity of harmful algal blooms due to cultural eutrophication globally, this could have significant implications for predator-prey relationships in aquatic systems.
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Affiliation(s)
- Chelsey L Nieman
- School of Environment and Natural Resources, The Ohio State University, Columbus, Ohio, USA
| | - Suzanne M Gray
- School of Environment and Natural Resources, The Ohio State University, Columbus, Ohio, USA
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172
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Crampton WGR. Electroreception, electrogenesis and electric signal evolution. JOURNAL OF FISH BIOLOGY 2019; 95:92-134. [PMID: 30729523 DOI: 10.1111/jfb.13922] [Citation(s) in RCA: 64] [Impact Index Per Article: 12.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/22/2018] [Accepted: 02/05/2019] [Indexed: 05/06/2023]
Abstract
Electroreception, the capacity to detect external underwater electric fields with specialised receptors, is a phylogenetically widespread sensory modality in fishes and amphibians. In passive electroreception, a capacity possessed by c. 16% of fish species, an animal uses low-frequency-tuned ampullary electroreceptors to detect microvolt-range bioelectric fields from prey, without the need to generate its own electric field. In active electroreception (electrolocation), which occurs only in the teleost lineages Mormyroidea and Gymnotiformes, an animal senses its surroundings by generating a weak (< 1 V) electric-organ discharge (EOD) and detecting distortions in the EOD-associated field using high-frequency-tuned tuberous electroreceptors. Tuberous electroreceptors also detect the EODs of neighbouring fishes, facilitating electrocommunication. Several other groups of elasmobranchs and teleosts generate weak (< 10 V) or strong (> 50 V) EODs that facilitate communication or predation, but not electrolocation. Approximately 1.5% of fish species possess electric organs. This review has two aims. First, to synthesise our knowledge of the functional biology and phylogenetic distribution of electroreception and electrogenesis in fishes, with a focus on freshwater taxa and with emphasis on the proximate (morphological, physiological and genetic) bases of EOD and electroreceptor diversity. Second, to describe the diversity, biogeography, ecology and electric signal diversity of the mormyroids and gymnotiforms and to explore the ultimate (evolutionary) bases of signal and receptor diversity in their convergent electrogenic-electrosensory systems. Four sets of potential drivers or moderators of signal diversity are discussed. First, selective forces of an abiotic (environmental) nature for optimal electrolocation and communication performance of the EOD. Second, selective forces of a biotic nature targeting the communication function of the EOD, including sexual selection, reproductive interference from syntopic heterospecifics and selection from eavesdropping predators. Third, non-adaptive drift and, finally, phylogenetic inertia, which may arise from stabilising selection for optimal signal-receptor matching.
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173
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Rosenthal MF, Hebets EA, Kessler B, McGinley R, Elias DO. The effects of microhabitat specialization on mating communication in a wolf spider. Behav Ecol 2019. [DOI: 10.1093/beheco/arz091] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
Abstract
Animal signals experience selection for detectability, which is determined in large part by the signal transmission properties of the habitat. Understanding the ecological context in which communication takes place is therefore critical to understanding selection on the form of communication signals. In order to determine the influence of environmental heterogeneity on signal transmission, we focus on a wolf spider species native to central Florida, Schizocosa floridana, in which males court females using a substrate-borne vibratory song. We test the hypothesis that S. floridana is a substrate specialist by 1) assessing substrate use by females and males in the field, 2) quantifying substrate-specific vibratory signal transmission in the laboratory, and 3) determining substrate-specific mating success in the laboratory. We predict a priori that 1) S. floridana restricts its signaling to oak litter, 2) oak litter best transmits their vibratory signal, and 3) S. floridana mates most readily on oak litter. We find that S. floridana is almost exclusively found on oak litter, which was found to attenuate vibratory courtship signals the least. Spiders mated with equal frequency on oak and pine, but did not mate at all on sand. Additionally, we describe how S. floridana song contains a novel component, chirps, which attenuate more strongly than its other display components on pine and sand, but not on oak, suggesting that the ways in which the environment relaxes restrictions on signal form may be as important as the ways in which it imposes them.
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Affiliation(s)
- Malcolm F Rosenthal
- Department of Environmental Sciences, Policy, and Management, University of California, Berkeley, CA, USA
| | - Eileen A Hebets
- School of Biological Sciences, University of Nebraska-Lincoln, Lincoln, NE, USA
| | - Benji Kessler
- Department of Environmental Sciences, Policy, and Management, University of California, Berkeley, CA, USA
| | - Rowan McGinley
- School of Biological Sciences, University of Nebraska-Lincoln, Lincoln, NE, USA
| | - Damian O Elias
- Department of Environmental Sciences, Policy, and Management, University of California, Berkeley, CA, USA
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174
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Sbragaglia V, Gliese C, Bierbach D, Honsey AE, Uusi-Heikkilä S, Arlinghaus R. Size-selective harvesting fosters adaptations in mating behaviour and reproductive allocation, affecting sexual selection in fish. J Anim Ecol 2019; 88:1343-1354. [PMID: 31131886 DOI: 10.1111/1365-2656.13032] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2018] [Accepted: 04/20/2019] [Indexed: 01/01/2023]
Abstract
The role of sexual selection in the context of harvest-induced evolution is poorly understood. However, elevated and trait-selective harvesting of wild populations may change sexually selected traits, which in turn can affect mate choice and reproduction. We experimentally evaluated the potential for fisheries-induced evolution of mating behaviour and reproductive allocation in fish. We used an experimental system of zebrafish (Danio rerio) lines exposed to large, small or random (i.e. control) size-selective mortality. The large-harvested line represented a treatment simulating the typical case in fisheries where the largest individuals are preferentially harvested. We used a full factorial design of spawning trials with size-matched individuals to control for the systematic impact of body size during reproduction, thereby singling out possible changes in mating behaviour and reproductive allocation. Both small size-selective mortality and large size-selective mortality left a legacy on male mating behaviour by elevating intersexual aggression. However, there was no evidence for line-assortative reproductive allocation. Females of all lines preferentially allocated eggs to the generally less aggressive males of the random-harvested control line. Females of the large-harvested line showed enhanced reproductive performance, and males of the large-harvested line had the highest egg fertilization rate among all males. These findings can be explained as an evolutionary adaptation by which individuals of the large-harvested line display an enhanced reproductive performance early in life to offset the increased probability of adult mortality due to harvest. Our results suggest that the large-harvested line evolved behaviourally mediated reproductive adaptations that could increase the rate of recovery when populations adapted to high fishing pressure come into secondary contact with other populations.
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Affiliation(s)
- Valerio Sbragaglia
- Department of Biology and Ecology of Fishes, Leibniz-Institute of Freshwater Ecology and Inland Fisheries, Berlin, Germany.,Institute for Environmental Protection and Research (ISPRA), Livorno, Italy
| | - Catalina Gliese
- Department of Biology and Ecology of Fishes, Leibniz-Institute of Freshwater Ecology and Inland Fisheries, Berlin, Germany
| | - David Bierbach
- Department of Biology and Ecology of Fishes, Leibniz-Institute of Freshwater Ecology and Inland Fisheries, Berlin, Germany
| | - Andrew E Honsey
- Ecology, Evolution, and Behavior Graduate Program, University of Minnesota, Saint Paul, Minnesota
| | - Silva Uusi-Heikkilä
- Department of Biology, University of Turku, Turku, Finland.,Department of Biological and Environmental Science, University of Jyväskylä, Jyväskylä, Finland
| | - Robert Arlinghaus
- Department of Biology and Ecology of Fishes, Leibniz-Institute of Freshwater Ecology and Inland Fisheries, Berlin, Germany.,Division of Integrative Fisheries Management, Department of Crop and Animal Sciences, Faculty of Life Sciences, Humboldt-Universität zu Berlin, Berlin, Germany
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175
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Luehrmann M, Carleton KL, Cortesi F, Cheney KL, Marshall NJ. Cardinalfishes (Apogonidae) show visual system adaptations typical of nocturnally and diurnally active fish. Mol Ecol 2019; 28:3025-3041. [DOI: 10.1111/mec.15102] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2018] [Revised: 03/20/2019] [Accepted: 03/25/2019] [Indexed: 12/31/2022]
Affiliation(s)
- Martin Luehrmann
- Sensory Neurobiology Group, Queensland Brain Institute The University of Queensland Brisbane Queensland Australia
| | | | - Fabio Cortesi
- Sensory Neurobiology Group, Queensland Brain Institute The University of Queensland Brisbane Queensland Australia
| | - Karen L. Cheney
- Sensory Neurobiology Group, Queensland Brain Institute The University of Queensland Brisbane Queensland Australia
- School of Biological Sciences The University of Queensland Brisbane Queensland Australia
| | - N. Justin Marshall
- Sensory Neurobiology Group, Queensland Brain Institute The University of Queensland Brisbane Queensland Australia
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176
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Owens GL, Rennison DJ. Evolutionary ecology of opsin gene sequence, expression and repertoire. Mol Ecol 2019; 26:1207-1210. [PMID: 28271616 DOI: 10.1111/mec.14032] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2016] [Revised: 01/06/2017] [Accepted: 01/09/2017] [Indexed: 11/30/2022]
Abstract
Linking molecular evolution to biological function is a long-standing challenge in evolutionary biology. Some of the best examples of this involve opsins, the genes that encode the molecular basis of light reception. In this issue of Molecular Ecology, three studies examine opsin gene sequence, expression and repertoire to determine how natural selection has shaped the visual system. First, Escobar-Camacho et al. () use opsin repertoire and expression in three Amazonian cichlid species to show that a shift in sensitivity towards longer wavelengths is coincident with the long-wavelength-dominated Amazon basin. Second, Stieb et al. () explore opsin sequence and expression in reef-dwelling damselfish and find that UV- and long-wavelength vision are both important, but likely for different ecological functions. Lastly, Suvorov et al. () study an expansive opsin repertoire in the insect order Odonata and find evidence that copy number expansion is consistent with the permanent heterozygote model of gene duplication. Together these studies emphasize the utility of opsin genes for studying both the local adaptation of sensory systems and, more generally, gene family evolution.
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Affiliation(s)
- Gregory L Owens
- Department of Botany and Biodiversity Research Centre, University of British Columbia, Vancouver, BC, Canada
| | - Diana J Rennison
- Institute of Ecology and Evolution, University of Bern, Bern, Switzerland
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177
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Marques DA, Meier JI, Seehausen O. A Combinatorial View on Speciation and Adaptive Radiation. Trends Ecol Evol 2019; 34:531-544. [DOI: 10.1016/j.tree.2019.02.008] [Citation(s) in RCA: 162] [Impact Index Per Article: 32.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2018] [Revised: 02/07/2019] [Accepted: 02/13/2019] [Indexed: 01/28/2023]
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178
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Krohn AR, Diepeveen ET, Bi K, Rosenblum EB. Local adaptation does not lead to genome-wide differentiation in lava flow lizards. Ecol Evol 2019; 9:6810-6820. [PMID: 31380017 PMCID: PMC6662252 DOI: 10.1002/ece3.5231] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2018] [Revised: 04/11/2019] [Accepted: 04/15/2019] [Indexed: 11/09/2022] Open
Abstract
Adaptation can occur with or without genome-wide differentiation. If adaptive loci are linked to traits involved in reproductive isolation, genome-wide divergence is likely, and speciation is possible. However, adaptation can also lead to phenotypic differentiation without genome-wide divergence if levels of ongoing gene flow are high. Here, we use the replicated occurrence of melanism in lava flow lizards to assess the relationship between local adaptation and genome-wide differentiation. We compare patterns of phenotypic and genomic divergence among lava flow and nonlava populations for three lizard species and three lava flows in the Chihuahuan Desert. We find that local phenotypic adaptation (melanism) is not typically accompanied by genome-wide differentiation. Specifically, lava populations do not generally exhibit greater divergence from nonlava populations than expected by geography alone, regardless of whether the lava formation is 5,000 or 760,000 years old. We also infer that gene flow between lava and nonlava populations is ongoing in all lava populations surveyed. Recent work in the isolation by environment and ecological speciation literature suggests that environmentally driven genome-wide differentiation is common in nature. However, local adaptation may often simply be local adaptation rather than an early stage of ecological speciation.
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Affiliation(s)
- Alexander R. Krohn
- Department of Environmental Science, Policy and ManagementUniversity of California, BerkeleyBerkeleyCalifornia
- Museum of Vertebrate ZoologyUniversity of California, BerkeleyBerkeleyCalifornia
| | - Eveline T. Diepeveen
- Department of Bionanoscience, Kavli Institute of NanoScience, Faculty of Applied SciencesDelft University of TechnologyDelftThe Netherlands
| | - Ke Bi
- Museum of Vertebrate ZoologyUniversity of California, BerkeleyBerkeleyCalifornia
- Computational Genomics Resource Laboratory (CGRL), California Institute for Quantitative Biosciences (QB3)University of California, BerkeleyBerkeleyCalifornia
| | - Erica Bree Rosenblum
- Department of Environmental Science, Policy and ManagementUniversity of California, BerkeleyBerkeleyCalifornia
- Museum of Vertebrate ZoologyUniversity of California, BerkeleyBerkeleyCalifornia
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179
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Montenegro J, Mochida K, Matsui K, Mokodongan DF, Sumarto BKA, Lawelle SA, Nofrianto AB, Hadiaty RK, Masengi KWA, Yong L, Inomata N, Irie T, Hashiguchi Y, Terai Y, Kitano J, Yamahira K. Convergent evolution of body color between sympatric freshwater fishes via different visual sensory evolution. Ecol Evol 2019; 9:6389-6398. [PMID: 31236229 PMCID: PMC6580282 DOI: 10.1002/ece3.5211] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2019] [Revised: 04/05/2019] [Accepted: 04/11/2019] [Indexed: 12/18/2022] Open
Abstract
Although there are many examples of color evolution potentially driven by sensory drive, only few studies have examined whether distinct species inhabiting the same environments evolve similar body colors via shared sensory mechanisms. In this study, we tested whether two sympatric freshwater fish taxa, halfbeaks of the genus Nomorhamphus and ricefishes of the genus Oryzias in Sulawesi Island, converge in both body color and visual sensitivity. After reconstructing the phylogeny separately for Nomorhamphus and Oryzias using transcriptome-wide sequences, we demonstrated positive correlations of body redness between these two taxa across environments, even after phylogenetic corrections, which support convergent evolution. However, substantial differences were observed in the expression profiles of opsin genes in the eyes between Nomorhamphus and Oryzias. Particularly, the expression levels of the long wavelength-sensitive genes were negatively correlated between the taxa, indicating that they have different visual sensitivities despite living in similar light environments. Thus, the convergence of body colorations between these two freshwater fish taxa was not accompanied by convergence in opsin sensitivities. This system presents a case in which body color convergence can occur between sympatric species via different mechanisms.
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Affiliation(s)
- Javier Montenegro
- Tropical Biosphere Research CenterUniversity of the RyukyusOkinawaJapan
| | - Koji Mochida
- Department of BiologyKeio UniversityYokohamaJapan
| | - Kumi Matsui
- School of Veterinary MedicineAzabu UniversitySagamiharaJapan
| | - Daniel F. Mokodongan
- Tropical Biosphere Research CenterUniversity of the RyukyusOkinawaJapan
- Faculty of Fisheries and Marine ScienceHalu Oleo UniversityKendariIndonesia
| | | | - Sjamsu A. Lawelle
- Faculty of Fisheries and Marine ScienceHalu Oleo UniversityKendariIndonesia
| | - Andy B. Nofrianto
- Faculty of Fisheries and Marine ScienceHalu Oleo UniversityKendariIndonesia
| | | | | | - Lengxob Yong
- Ecological Genetics LaboratoryNational Institute of GeneticsMishimaJapan
- Center for Ecology and Conservation, College of Life and Environmental SciencesUniversity of ExeterCornwallUK
| | - Nobuyuki Inomata
- Department of Environmental ScienceFukuoka Women's UniversityFukuokaJapan
| | | | | | - Yohey Terai
- Department of Evolutionary Studies of BiosystemsThe Graduate University for Advanced StudiesHayamaJapan
| | - Jun Kitano
- Ecological Genetics LaboratoryNational Institute of GeneticsMishimaJapan
| | - Kazunori Yamahira
- Tropical Biosphere Research CenterUniversity of the RyukyusOkinawaJapan
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180
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Pires THS, Borghezan EA, Cunha SLR, Leitão RP, Pinto KS, Zuanon J. Sensory drive in colourful waters: morphological variation suggests combined natural and sexual selection in an Amazonian fish. Biol J Linn Soc Lond 2019. [DOI: 10.1093/biolinnean/blz054] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Affiliation(s)
- Tiago H S Pires
- Laboratório de Ecologia Comportamental e Evolutiva - LECE, Instituto Nacional de Pesquisas da Amazônia - INPA., Petrópolis, Manaus AM, Brazil
| | - Elio A Borghezan
- Laboratório de Ecologia Comportamental e Evolutiva - LECE, Instituto Nacional de Pesquisas da Amazônia - INPA., Petrópolis, Manaus AM, Brazil
- Wildlife Research Center of Kyoto University., Sakyo-ku, Kyoto, Japan
| | - Sergio L R Cunha
- Laboratório de Ecologia Comportamental e Evolutiva - LECE, Instituto Nacional de Pesquisas da Amazônia - INPA., Petrópolis, Manaus AM, Brazil
- Laboratório de Ecologia de Ecossistemas Aquáticos - LEEA, Universidade Federal do Ceará/UFC, Fortaleza CE, Brazil
| | - Rafael P Leitão
- Laboratório de Ecologia de Peixes, Departamento de Biologia Geral - ICB, Universidade Federal de Minas Gerais/UFMG, Pampulha, Belo Horizonte MG, Brazil
| | - Kalebe S Pinto
- Laboratório de Ecologia Comportamental e Evolutiva - LECE, Instituto Nacional de Pesquisas da Amazônia - INPA., Petrópolis, Manaus AM, Brazil
| | - Jansen Zuanon
- Laboratório de Ecologia Comportamental e Evolutiva - LECE, Instituto Nacional de Pesquisas da Amazônia - INPA., Petrópolis, Manaus AM, Brazil
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181
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Zonana DM, Gee JM, Bridge ES, Breed MD, Doak DF. Assessing Behavioral Associations in a Hybrid Zone through Social Network Analysis: Complex Assortative Behaviors Structure Associations in a Hybrid Quail Population. Am Nat 2019; 193:852-865. [PMID: 31094596 DOI: 10.1086/703158] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Abstract
Behavior can strongly influence rates and patterns of hybridization between animal populations and species. Yet few studies have examined reproductive behaviors in natural hybrid zones within the fine-scale social context in which they naturally occur. We use radio-frequency identification tags with social network analyses to test whether phenotypic similarity in plumage and mass correlate with social behavior throughout a breeding season in a California and Gambel's quail hybrid zone. We use a novel approach to partition phenotypic variation in a way that does not confound differences between sexes and species, and we illustrate the complex ways that phenotype and behavior structure the social environment, mating opportunities, and male-male associations. Associations within the admixed population were random with respect to species-specific plumage but showed strong patterns of assortment based on sexually dimorphic plumage, monomorphic plumage, and mass. Weak behavioral reproductive isolation in this admixed population may be the result of complex patterns of phenotypic assortment based on multiple traits rather than a lack of phenotypic discrimination. More generally, our results support the utility of social network analyses for analyzing behavioral factors affecting genetic exchange between populations and species.
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182
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Chang CH, Yan HY. Plasticity of opsin gene expression in the adult red shiner (Cyprinella lutrensis) in response to turbid habitats. PLoS One 2019; 14:e0215376. [PMID: 30978235 PMCID: PMC6461250 DOI: 10.1371/journal.pone.0215376] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2018] [Accepted: 04/01/2019] [Indexed: 11/30/2022] Open
Abstract
Vision is very important to fish as it is required for foraging food, fighting competitors, fleeing from predators, and finding potential mates. Vertebrates express opsin genes in photoreceptor cells to receive visual signals, and the variety of light levels in aquatic habits has driven fish to evolve multiple opsin genes with expression profiles that are highly plastic. In this study, red shiners (Cyprinella lutrensis) were exposed to four water turbidity treatments and their opsin genes were cloned to elucidate how opsin gene expression could be modulated by ambient light conditions. Opsin gene cloning revealed that these fish have single RH1, SWS1, SWS2 and LWS genes and two RH2 genes. Phylogenetic analysis also indicated that these two RH2 opsin genes-RH2A and RH2B -are in-paralogous. Using quantitative PCR, we found evidence that opsin expression is plastic in adults. Elevated proportional expression of LWS in the cone under ambient light and turbid treatment indicated that the red shiner's visual spectrum displays a red shift in response to increased turbidity.
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Affiliation(s)
- Chia-Hao Chang
- Department of Life Science, Tunghai University, Taichung City, Taiwan
- Center for Ecology and Environment, Tunghai University, Taichung City, Taiwan
| | - Hong Young Yan
- National Museum of Marine Biology & Aquarium, Checheng, Pingtung, Taiwan
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183
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Renoult JP, Mendelson TC. Processing bias: extending sensory drive to include efficacy and efficiency in information processing. Proc Biol Sci 2019; 286:20190165. [PMID: 30940061 DOI: 10.1098/rspb.2019.0165] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022] Open
Abstract
Communication signals often comprise an array of colours, lines, spots, notes or odours that are arranged in complex patterns, melodies or blends. Receiver perception is assumed to influence preference and thus the evolution of signal design, but evolutionary biologists still struggle to understand how perception, preference and signal design are mechanistically linked. In parallel, the field of empirical aesthetics aims to understand why people like some designs more than others. The model of processing bias discussed here is rooted in empirical aesthetics, which posits that preferences are influenced by the emotional system as it monitors the dynamics of information processing and that attractive signals have effective designs that maximize information transmission, efficient designs that allow information processing at low metabolic cost, or both. We refer to the causal link between preference and the emotionally rewarding experience of effective and efficient information processing as the processing bias, and we apply it to the evolutionary model of sensory drive. A sensory drive model that incorporates processing bias hypothesizes a causal chain of relationships between the environment, perception, pleasure, preference and ultimately the evolution of signal design, both simple and complex.
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Affiliation(s)
- Julien P Renoult
- 1 Centre of Evolutionary and Functional Ecology (CEFE UMR5175), CNRS-University of Montpellier-University Paul-Valery Montpellier-EPHE) , 1919 route de Mende, 34293 Montpellier , France
| | - Tamra C Mendelson
- 2 Department of Biological Sciences, University of Maryland Baltimore County , 1000 Hilltop Circle, Baltimore, MD 21250 , USA
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184
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Muschick M, Russell JM, Jemmi E, Walker J, Stewart KM, Murray AM, Dubois N, Stager JC, Johnson TC, Seehausen O. Arrival order and release from competition does not explain why haplochromine cichlids radiated in Lake Victoria. Proc Biol Sci 2019; 285:rspb.2018.0462. [PMID: 29743255 DOI: 10.1098/rspb.2018.0462] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2018] [Accepted: 04/12/2018] [Indexed: 12/31/2022] Open
Abstract
The frequent occurrence of adaptive radiations on oceanic islands and in lakes is often attributed to ecological opportunity resulting from release from competition where arrival order among lineages predicts which lineage radiates. This priority effect occurs when the lineage that arrives first expands its niche breadth and diversifies into a set of ecological specialists with associated monopolization of the resources. Later-arriving species do not experience ecological opportunity and do not radiate. While theoretical support and evidence from microbial experiments for priority effects are strong, empirical evidence in nature is difficult to obtain. Lake Victoria (LV) is home to an exceptional adaptive radiation of haplochromine cichlid fishes, where 20 trophic guilds and several hundred species emerged in just 15 000 years, the age of the modern lake that was preceded by a complete desiccation lasting several thousand years. However, while about 50 other lineages of teleost fish also have established populations in the lake, none of them has produced more than two species and most of them did not speciate at all. Here, we test if the ancestors of the haplochromine radiation indeed arrived prior to the most competent potential competitors, 'tilapias' and cyprinids, both of which have made rapid radiations in other African lakes. We assess LV sediment core intervals from just before the desiccation and just after refilling for the presence of fossil fish teeth. We show that all three lineages were present when modern LV began to fill with water. We conclude that the haplochromines' extraordinary radiation unfolded in the presence of potentially competing lineages and cannot be attributed to a simple priority effect.
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Affiliation(s)
- Moritz Muschick
- Aquatic Ecology and Evolution, Institute of Ecology and Evolution, University of Bern, CH-3012 Bern, Switzerland .,Department of Fish Ecology and Evolution, EAWAG, Swiss Federal Institute for Aquatic Science and Technology, CH-6047 Kastanienbaum, Switzerland
| | - James M Russell
- Department of Earth, Environmental, and Planetary Sciences, Brown University, 324 Brook St, Providence, RI 02912, USA
| | - Eliane Jemmi
- Aquatic Ecology and Evolution, Institute of Ecology and Evolution, University of Bern, CH-3012 Bern, Switzerland.,Department of Fish Ecology and Evolution, EAWAG, Swiss Federal Institute for Aquatic Science and Technology, CH-6047 Kastanienbaum, Switzerland
| | - Jonas Walker
- Aquatic Ecology and Evolution, Institute of Ecology and Evolution, University of Bern, CH-3012 Bern, Switzerland.,Department of Fish Ecology and Evolution, EAWAG, Swiss Federal Institute for Aquatic Science and Technology, CH-6047 Kastanienbaum, Switzerland
| | - Kathlyn M Stewart
- Palaeobiology Section, Canadian Museum of Nature, P.O. Box 3443, Station D, Ottawa, Ontario, Canada K1P 6P4
| | - Alison M Murray
- Department of Biological Sciences, University of Alberta, Edmonton, Alberta, Canada T6G 2E9
| | - Nathalie Dubois
- Department of Earth Sciences, ETHZ, CH-8092 Zurich, Switzerland.,Department of Surface Waters-Research and Management, EAWAG, Swiss Federal Institute for Aquatic Science and Technology, CH-8600 Dübendorf, Switzerland
| | - J Curt Stager
- Natural Sciences, Paul Smith's College, 7777 State Route 30, Paul Smiths, NY 12970, USA
| | - Thomas C Johnson
- Large Lakes Observatory, University of Minnesota Duluth, 2205 E. 5th Street, Duluth, MN 55812, USA
| | - Ole Seehausen
- Aquatic Ecology and Evolution, Institute of Ecology and Evolution, University of Bern, CH-3012 Bern, Switzerland.,Department of Fish Ecology and Evolution, EAWAG, Swiss Federal Institute for Aquatic Science and Technology, CH-6047 Kastanienbaum, Switzerland
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185
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Knief U, Bossu CM, Saino N, Hansson B, Poelstra J, Vijay N, Weissensteiner M, Wolf JBW. Epistatic mutations under divergent selection govern phenotypic variation in the crow hybrid zone. Nat Ecol Evol 2019; 3:570-576. [PMID: 30911146 PMCID: PMC6445362 DOI: 10.1038/s41559-019-0847-9] [Citation(s) in RCA: 41] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2018] [Accepted: 02/18/2019] [Indexed: 12/22/2022]
Abstract
The evolution of genetic barriers opposing inter-specific gene flow is key to the origin of new species. Drawing from information of over 400 admixed genomes sourced from replicate transects across the European hybrid zone between all-black carrion crows and grey-coated hooded crows, we decipher the interplay between phenotypic divergence and selection at the molecular level. Over 68% of plumage variation was explained by epistasis between the gene NDP and a ~2.8 Mb region on chromosome 18 with suppressed recombination. Both pigmentation loci showed evidence for divergent selection resisting introgression. This study reveals how few, large-effect loci can govern prezygotic isolation and shield phenotypic divergence from gene flow.
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Affiliation(s)
- Ulrich Knief
- Division of Evolutionary Biology, Faculty of Biology, LMU Munich, Munich, Germany
| | - Christen M Bossu
- Science for Life Laboratories and Department of Evolutionary Biology, Uppsala University, Uppsala, Sweden.,Population Genetics, Department of Zoology, Stockholm University, Stockholm, Sweden.,Institute of the Environment and Sustainability, Center for Tropical Research, University of California, Los Angeles, CA, USA
| | - Nicola Saino
- Department of Environmental Science and Policy, University of Milan, Milan, Italy
| | - Bengt Hansson
- Department of Biology, Lund University, Lund, Sweden
| | - Jelmer Poelstra
- Science for Life Laboratories and Department of Evolutionary Biology, Uppsala University, Uppsala, Sweden.,Biology Department, Duke University, Durham, NC, USA
| | - Nagarjun Vijay
- Science for Life Laboratories and Department of Evolutionary Biology, Uppsala University, Uppsala, Sweden.,Department of Biological Sciences, Indian Institute of Science Education and Research, Bhopal, India
| | - Matthias Weissensteiner
- Division of Evolutionary Biology, Faculty of Biology, LMU Munich, Munich, Germany.,Science for Life Laboratories and Department of Evolutionary Biology, Uppsala University, Uppsala, Sweden
| | - Jochen B W Wolf
- Division of Evolutionary Biology, Faculty of Biology, LMU Munich, Munich, Germany. .,Science for Life Laboratories and Department of Evolutionary Biology, Uppsala University, Uppsala, Sweden.
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186
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Takuno S, Miyagi R, Onami JI, Takahashi-Kariyazono S, Sato A, Tichy H, Nikaido M, Aibara M, Mizoiri S, Mrosso HDJ, Mzighani SI, Okada N, Terai Y. Patterns of genomic differentiation between two Lake Victoria cichlid species, Haplochromis pyrrhocephalus and H. sp. 'macula'. BMC Evol Biol 2019; 19:68. [PMID: 30832572 PMCID: PMC6399900 DOI: 10.1186/s12862-019-1387-2] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2017] [Accepted: 02/12/2019] [Indexed: 01/31/2023] Open
Abstract
BACKGROUND The molecular basis of the incipient stage of speciation is still poorly understood. Cichlid fish species in Lake Victoria are a prime example of recent speciation events and a suitable system to study the adaptation and reproductive isolation of species. RESULTS Here, we report the pattern of genomic differentiation between two Lake Victoria cichlid species collected in sympatry, Haplochromis pyrrhocephalus and H. sp. 'macula,' based on the pooled genome sequences of 20 individuals of each species. Despite their ecological differences, population genomics analyses demonstrate that the two species are very close to a single panmictic population due to extensive gene flow. However, we identified 21 highly differentiated short genomic regions with fixed nucleotide differences. At least 15 of these regions contained genes with predicted roles in adaptation and reproductive isolation, such as visual adaptation, circadian clock, developmental processes, adaptation to hypoxia, and sexual selection. The nonsynonymous fixed differences in one of these genes, LWS, were reported as substitutions causing shift in absorption spectra of LWS pigments. Fixed differences were found in the promoter regions of four other differentially expressed genes, indicating that these substitutions may alter gene expression levels. CONCLUSIONS These diverged short genomic regions may have contributed to the differentiation of two ecologically different species. Moreover, the origins of adaptive variants within the differentiated regions predate the geological formation of Lake Victoria; thus Lake Victoria cichlid species diversified via selection on standing genetic variation.
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Affiliation(s)
- Shohei Takuno
- Department of Evolutionary Studies of Biosystems, SOKENDAI (The Graduate University for Advanced Studies), Shonan Village, Hayama, Kanagawa, 240-0193 Japan
| | - Ryutaro Miyagi
- Graduate School of Bioscience and Biotechnology, Tokyo Institute of Technology, 4259 Nagatsuta-cho, Midori-ku, Yokohama, 226-8501 Japan
- Department of Biological sciences, Tokyo Metropolitan University, 1-1 Minamiosawa, Hachioji, Tokyo, 197-0397 Japan
| | - Jun-ichi Onami
- JST (Japan Science and Technology Agency), NBDC (National Bioscience Database Center), 5-3, Yonbancho, Chiyoda-ku, Tokyo, 102-0081 Japan
| | - Shiho Takahashi-Kariyazono
- Department of Evolutionary Studies of Biosystems, SOKENDAI (The Graduate University for Advanced Studies), Shonan Village, Hayama, Kanagawa, 240-0193 Japan
| | - Akie Sato
- Department of Anatomy and Cytohistology, School of Dental Medicine, Tsurumi University, 2-1-3 Tsurumi, Tsurumi-ku, Yokohama, 230-8501 Japan
| | - Herbert Tichy
- Max-Planck-Institut für Biologie, Abteilung Immungenetik, Corrensstrasse 42, D-72076 Tübingen, Germany
| | - Masato Nikaido
- School of Life Science and Technology, Department of Life Science and Technology, Tokyo Institute of Technology (Tokyo Tech), 2-12-1, Ookayama, Meguro ward, Tokyo, Japan
| | - Mitsuto Aibara
- Graduate School of Bioscience and Biotechnology, Tokyo Institute of Technology, 4259 Nagatsuta-cho, Midori-ku, Yokohama, 226-8501 Japan
| | - Shinji Mizoiri
- Graduate School of Bioscience and Biotechnology, Tokyo Institute of Technology, 4259 Nagatsuta-cho, Midori-ku, Yokohama, 226-8501 Japan
| | | | - Semvua I. Mzighani
- Graduate School of Bioscience and Biotechnology, Tokyo Institute of Technology, 4259 Nagatsuta-cho, Midori-ku, Yokohama, 226-8501 Japan
- Tanzania Fisheries Research Institute (TAFIRI), Mwanza, Tanzania
| | - Norihiro Okada
- Graduate School of Bioscience and Biotechnology, Tokyo Institute of Technology, 4259 Nagatsuta-cho, Midori-ku, Yokohama, 226-8501 Japan
- Department of Life Sciences, National Cheng Kung University, 701 Tainan, Taiwan
- Foundation for Advancement of International Science (FAIS), Tsukuba, Japan
| | - Yohey Terai
- Department of Evolutionary Studies of Biosystems, SOKENDAI (The Graduate University for Advanced Studies), Shonan Village, Hayama, Kanagawa, 240-0193 Japan
- Graduate School of Bioscience and Biotechnology, Tokyo Institute of Technology, 4259 Nagatsuta-cho, Midori-ku, Yokohama, 226-8501 Japan
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187
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Langton‐Myers SS, Holwell GI, Buckley TR. Weak premating isolation betweenClitarchusstick insect species despite divergent male and female genital morphology. J Evol Biol 2019; 32:398-411. [DOI: 10.1111/jeb.13424] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2018] [Revised: 01/30/2019] [Accepted: 02/01/2019] [Indexed: 01/06/2023]
Affiliation(s)
- Shelley S. Langton‐Myers
- Manaaki Whenua – Landcare Research Auckland New Zealand
- School of Biological SciencesThe University of Auckland Auckland New Zealand
- EcoQuest Education Foundation ‐ Te Rarangahau Taiao Whakatiwai New Zealand
| | - Gregory I. Holwell
- School of Biological SciencesThe University of Auckland Auckland New Zealand
| | - Thomas R. Buckley
- Manaaki Whenua – Landcare Research Auckland New Zealand
- School of Biological SciencesThe University of Auckland Auckland New Zealand
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188
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Mameri D, van Kammen C, Groothuis TGG, Seehausen O, Maan ME. Visual adaptation and microhabitat choice in Lake Victoria cichlid fish. ROYAL SOCIETY OPEN SCIENCE 2019; 6:181876. [PMID: 31032041 PMCID: PMC6458373 DOI: 10.1098/rsos.181876] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/07/2018] [Accepted: 03/05/2019] [Indexed: 06/04/2023]
Abstract
When different genotypes choose different habitats to better match their phenotypes, genetic differentiation within a population may be promoted. Mating within those habitats may subsequently contribute to reproductive isolation. In cichlid fish, visual adaptation to alternative visual environments is hypothesized to contribute to speciation. Here, we investigated whether variation in visual sensitivity causes different visual habitat preferences, using two closely related cichlid species that occur at different but overlapping water depths in Lake Victoria and that differ in visual perception (Pundamilia spp.). In addition to species differences, we explored potential effects of visual plasticity, by rearing fish in two different light conditions: broad-spectrum (mimicking shallow water) and red-shifted (mimicking deeper waters). Contrary to expectations, fish did not prefer the light environment that mimicked their typical natural habitat. Instead, we found an overall preference for the broad-spectrum environment. We also found a transient influence of the rearing condition, indicating that the assessment of microhabitat preference requires repeated testing to control for familiarity effects. Together, our results show that cichlid fish exert visual habitat preference but do not support straightforward visual habitat matching.
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Affiliation(s)
- Daniel Mameri
- CEF – Forest Research Centre, School of Agriculture, University of Lisbon, Lisbon, Portugal
- Groningen Institute for Evolutionary Life Sciences (GELIFES), University of Groningen, Groningen, The Netherlands
| | - Corina van Kammen
- Groningen Institute for Evolutionary Life Sciences (GELIFES), University of Groningen, Groningen, The Netherlands
- Van Hall Larenstein University of Applied Sciences, Leeuwarden, The Netherlands
| | - Ton G. G. Groothuis
- Groningen Institute for Evolutionary Life Sciences (GELIFES), University of Groningen, Groningen, The Netherlands
| | - Ole Seehausen
- Department of Fish Ecology and Evolution, Eawag Center for Ecology, Evolution and Biogeochemistry, Kastanienbaum, Switzerland
- Institute of Ecology and Evolution, University of Bern, Bern, Switzerland
| | - Martine E. Maan
- Groningen Institute for Evolutionary Life Sciences (GELIFES), University of Groningen, Groningen, The Netherlands
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189
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Cole GL, Lynn JCB, Kranz AM, Endler JA. Colour‐based foraging diverges after multiple generations under different light environments. Ethology 2019. [DOI: 10.1111/eth.12847] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Gemma L. Cole
- Centre for Integrative Ecology, School of Life and Environmental Science Deakin University Geelong Victoria Australia
| | - Jessica C. B. Lynn
- Centre for Integrative Ecology, School of Life and Environmental Science Deakin University Geelong Victoria Australia
| | - Alexandrea M. Kranz
- Centre for Integrative Ecology, School of Life and Environmental Science Deakin University Geelong Victoria Australia
| | - John A. Endler
- Centre for Integrative Ecology, School of Life and Environmental Science Deakin University Geelong Victoria Australia
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190
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Fulgione D, Buglione M, Rippa D, Trapanese M, Petrelli S, Monti DM, Aria M, Del Giudice R, Maselli V. Selection for background matching drives sympatric speciation in Wall Gecko. Sci Rep 2019; 9:1288. [PMID: 30718570 PMCID: PMC6361904 DOI: 10.1038/s41598-018-37587-3] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2018] [Accepted: 12/10/2018] [Indexed: 11/09/2022] Open
Abstract
The Wall Gecko shows heterogeneous colour pattern, which may vary among individuals, depending on the time of day and on the habitat segregation. Nocturnal pale geckos live exclusively on walls. Diurnal dark geckos preferentially live on olive tree trunks, demonstrating an ability to change skin colour that is superior to that of the pale gecko and allows diurnal geckos becoming camouflaged on the diverse substrates occupied during the day. In our study, the nocturnal/pale/wall and diurnal/dark/trunk geckos could be considered the extremes of an ecological cline of morphological variation on which divergent selection may be acting. Combining the effect of balancing selection on nocturnal geckos and disruptive selection between two sympatric populations could lead to speciation. All geckos analysed here belong to the same species, as confirmed by genetic characterization, however diurnal and nocturnal gecko populations seem to be in an early stage of incipient speciation. These two different morphs still combine genes, as revealed by neutral genetic markers, yet they show complete separation according to the analyses of mtDNA coding genes. Experimental results show that diurnal and nocturnal geckos do not swap their niches, likely because the predation pressure causes severe selection for background matching. Genomic analysis of complete mtDNA suggests that nocturnal geckos seem to be under balancing selection perhaps due to the narrow niche in which they live, whereas the daytime population has more opportunity in fitting into the multiple available niches, and they experience positive selection. Here we hypothesize that the ecological segregation that we are witnessing between the nocturnal and diurnal geckos, can lead to a ecological speciation.
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Affiliation(s)
- Domenico Fulgione
- Department of Biology, University of Naples Federico II, Via Cupa Nuova Cinthia 26, 80126, Naples, Italy.
| | - Maria Buglione
- Department of Biology, University of Naples Federico II, Via Cupa Nuova Cinthia 26, 80126, Naples, Italy
| | - Daniela Rippa
- Department of Biology, University of Naples Federico II, Via Cupa Nuova Cinthia 26, 80126, Naples, Italy
| | - Martina Trapanese
- Department of Biology, University of Naples Federico II, Via Cupa Nuova Cinthia 26, 80126, Naples, Italy
| | - Simona Petrelli
- Department of Biology, University of Naples Federico II, Via Cupa Nuova Cinthia 26, 80126, Naples, Italy
| | - Daria Maria Monti
- Department of Chemical Sciences, University of Naples Federico II, Via Cupa Nuova Cinthia 26, 80126, Naples, Italy
| | - Massimo Aria
- Department of Economics and Statistics, University of Naples Federico II, Via Cupa Nuova Cinthia 26, 80126, Naples, Italy
| | - Rita Del Giudice
- Department of Chemical Sciences, University of Naples Federico II, Via Cupa Nuova Cinthia 26, 80126, Naples, Italy
| | - Valeria Maselli
- Department of Biology, University of Naples Federico II, Via Cupa Nuova Cinthia 26, 80126, Naples, Italy
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191
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Merrill RM, Rastas P, Martin SH, Melo MC, Barker S, Davey J, McMillan WO, Jiggins CD. Genetic dissection of assortative mating behavior. PLoS Biol 2019; 17:e2005902. [PMID: 30730873 PMCID: PMC6366751 DOI: 10.1371/journal.pbio.2005902] [Citation(s) in RCA: 52] [Impact Index Per Article: 10.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2018] [Accepted: 11/06/2018] [Indexed: 12/26/2022] Open
Abstract
The evolution of new species is made easier when traits under divergent ecological selection are also mating cues. Such ecological mating cues are now considered more common than previously thought, but we still know little about the genetic changes underlying their evolution or more generally about the genetic basis for assortative mating behaviors. Both tight physical linkage and the existence of large-effect preference loci will strengthen genetic associations between behavioral and ecological barriers, promoting the evolution of assortative mating. The warning patterns of Heliconius melpomene and H. cydno are under disruptive selection due to increased predation of nonmimetic hybrids and are used during mate recognition. We carried out a genome-wide quantitative trait locus (QTL) analysis of preference behaviors between these species and showed that divergent male preference has a simple genetic basis. We identify three QTLs that together explain a large proportion (approximately 60%) of the difference in preference behavior observed between the parental species. One of these QTLs is just 1.2 (0-4.8) centiMorgans (cM) from the major color pattern gene optix, and, individually, all three have a large effect on the preference phenotype. Genomic divergence between H. cydno and H. melpomene is high but broadly heterogenous, and admixture is reduced at the preference-optix color pattern locus but not the other preference QTLs. The simple genetic architecture we reveal will facilitate the evolution and maintenance of new species despite ongoing gene flow by coupling behavioral and ecological aspects of reproductive isolation.
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Affiliation(s)
- Richard M. Merrill
- Division of Evolutionary Biology, Ludwig-Maximilians-Universität, München, Germany
- Department of Zoology, University of Cambridge, Cambridge, United Kingdom
- Smithsonian Tropical Research Institute, Panama City, Panama
| | - Pasi Rastas
- Department of Zoology, University of Cambridge, Cambridge, United Kingdom
| | - Simon H. Martin
- Department of Zoology, University of Cambridge, Cambridge, United Kingdom
| | - Maria C. Melo
- Smithsonian Tropical Research Institute, Panama City, Panama
- IST Austria, Klosterburg, Austria
| | - Sarah Barker
- Department of Zoology, University of Cambridge, Cambridge, United Kingdom
| | - John Davey
- Department of Zoology, University of Cambridge, Cambridge, United Kingdom
- Department of Biology, University of York, York, United Kingdom
| | | | - Chris D. Jiggins
- Department of Zoology, University of Cambridge, Cambridge, United Kingdom
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192
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Skeels A, Cardillo M. Reconstructing the Geography of Speciation from Contemporary Biodiversity Data. Am Nat 2019; 193:240-255. [DOI: 10.1086/701125] [Citation(s) in RCA: 28] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
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193
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The Genetics of Mating Song Evolution Underlying Rapid Speciation: Linking Quantitative Variation to Candidate Genes for Behavioral Isolation. Genetics 2019; 211:1089-1104. [PMID: 30647070 DOI: 10.1534/genetics.118.301706] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2018] [Accepted: 01/11/2019] [Indexed: 02/07/2023] Open
Abstract
Differences in mating behaviors evolve early during speciation, eventually contributing to reproductive barriers between species. Knowledge of the genetic and genomic basis of these behaviors is therefore integral to a causal understanding of speciation. Acoustic behaviors are often part of the mating ritual in animal species. The temporal rhythms of mating songs are notably species-specific in many vertebrates and arthropods and often underlie assortative mating. Despite discoveries of mutations that disrupt the temporal rhythm of these songs, we know surprisingly little about genes affecting naturally occurring variation in the temporal pattern of singing behavior. In the rapidly speciating Hawaiian cricket genus Laupala, the striking species variation in song rhythms constitutes a behavioral barrier to reproduction between species. Here, we mapped the largest-effect locus underlying interspecific variation in song rhythm between two Laupala species to a narrow genomic region, wherein we find no known candidate genes affecting song temporal rhythm in Drosophila Whole-genome sequencing, gene prediction, and functional annotation of this region reveal an exciting and promising candidate gene, the putative cyclic nucleotide-gated ion channel-like gene, for natural variation in mating behavior. Identification and molecular characterization of the candidate gene reveals a nonsynonymous mutation in a conserved binding domain, suggesting that ion channels are important targets of selection on rhythmic signaling during establishment of behavioral isolation and rapid speciation.
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194
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van Rijssel JC, Moser FN, Frei D, Seehausen O. Prevalence of disruptive selection predicts extent of species differentiation in Lake Victoria cichlids. Proc Biol Sci 2019; 285:rspb.2017.2630. [PMID: 29367400 DOI: 10.1098/rspb.2017.2630] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2017] [Accepted: 01/02/2018] [Indexed: 11/12/2022] Open
Abstract
Theory suggests that speciation with gene flow is most likely when both sexual and ecological selection are divergent or disruptive. Divergent sexual and natural selection on the visual system have been demonstrated before in sympatric, morphologically similar sister species of Lake Victoria cichlids, but this does not explain the subtle morphological differences between them. To investigate the significance of natural selection on morphology during speciation, we here ask whether the prevalence of disruptive ecological selection differs between sympatric sister species that are at different stages of speciation. Some of our species pairs do (Pundamilia) and others do not (Neochromis) differ distinctively in sexually selected male nuptial coloration. We find that (i) evidence for disruptive selection, and for evolutionary response to it, is prevalent in traits that are differentiated between sister species; (ii) prevalence of both predicts the extent of genetic differentiation; and (iii) genetic differentiation is weaker in species pairs with conserved male nuptial coloration. Our results speak to the existence of two different mechanisms of speciation with gene flow: speciation mainly by sexual selection tightly followed by ecological character displacement in some cases and speciation mainly by divergent ecological selection in others.
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Affiliation(s)
- Jacco C van Rijssel
- Department of Fish Ecology and Evolution, EAWAG Center of Ecology, Evolution and Biogeochemistry, Kastanienbaum, Switzerland .,Institute of Ecology and Evolution, University of Bern, Bern, Switzerland
| | - Florian N Moser
- Department of Fish Ecology and Evolution, EAWAG Center of Ecology, Evolution and Biogeochemistry, Kastanienbaum, Switzerland.,Institute of Ecology and Evolution, University of Bern, Bern, Switzerland
| | - David Frei
- Department of Fish Ecology and Evolution, EAWAG Center of Ecology, Evolution and Biogeochemistry, Kastanienbaum, Switzerland.,Institute of Ecology and Evolution, University of Bern, Bern, Switzerland
| | - Ole Seehausen
- Department of Fish Ecology and Evolution, EAWAG Center of Ecology, Evolution and Biogeochemistry, Kastanienbaum, Switzerland .,Institute of Ecology and Evolution, University of Bern, Bern, Switzerland
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195
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Galván I, Murtada K, Jorge A, Ríos Á, Zougagh M. Unique evolution of vitamin A as an external pigment in tropical starlings. J Exp Biol 2019; 222:jeb.205229. [DOI: 10.1242/jeb.205229] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2019] [Accepted: 05/11/2019] [Indexed: 01/03/2023]
Abstract
Pigments are largely responsible for the appearance of organisms. Most biological pigments derive from the metabolism of shikimic acid (melanins), mevalonic acid (carotenoids) or levulinic acid (porphyrins), which thus generate the observed diversity of external phenotypes. Starlings are generally dark birds despite iridescence in feathers, but 10 % of species have evolved plumage pigmentation comprising bright colors that are known to be produced only by carotenoids. However, using micro-Raman spectroscopy, we have discovered that the bright yellow plumage coloration of one of these species, the Afrotropical golden-breasted starling Cosmopsarus regius, is not produced by carotenoids, but by vitamin A (all-trans-retinol). This is the first organism reported to deposit significant amounts of vitamin A in its integument and use it as a body pigment. Phylogenetic reconstructions reveal that the retinol-based pigmentation of the golden-breasted starling has independently appeared in the starling family from dark ancestors. Our study thus unveils a unique evolution of a new class of external pigments comprised by retinoids.
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Affiliation(s)
- Ismael Galván
- Department of Evolutionary Ecology, Doñana Biological Station, Consejo Superior de Investigaciones Científicas (CSIC), 41092 Sevilla, Spain
| | - Khaled Murtada
- Regional Institute for Applied Scientific Research (IRICA), University of Castilla-La Mancha, 13071 Ciudad Real, Spain
- Department of Analytical Chemistry and Food Technology, Faculty of Chemical Science and Technology, University of Castilla-La Mancha, 13071 Ciudad Real, Spain
| | - Alberto Jorge
- Laboratory of Non-Invasive Analytical Techniques, National Museum of Natural Sciences, Consejo Superior de Investigaciones Científicas (CSIC), 28006 Madrid, Spain
| | - Ángel Ríos
- Regional Institute for Applied Scientific Research (IRICA), University of Castilla-La Mancha, 13071 Ciudad Real, Spain
- Department of Analytical Chemistry and Food Technology, Faculty of Chemical Science and Technology, University of Castilla-La Mancha, 13071 Ciudad Real, Spain
| | - Mohammed Zougagh
- Regional Institute for Applied Scientific Research (IRICA), University of Castilla-La Mancha, 13071 Ciudad Real, Spain
- Department of Analytical Chemistry and Food Technology, Faculty of Pharmacy, University of Castilla-La Mancha, 02071 Albacete, Spain
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196
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Adeoba MI, Yessoufou K. Analysis of temporal diversification of African Cyprinidae (Teleostei, Cypriniformes). Zookeys 2018:141-161. [PMID: 30588160 PMCID: PMC6302146 DOI: 10.3897/zookeys.806.25844] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2018] [Accepted: 10/02/2018] [Indexed: 11/12/2022] Open
Abstract
Recent evidence that freshwater fishes diversify faster than marine fishes signifies that the evolutionary history of biodiversity in freshwater system is of particular interest. Here, the evolutionary diversification events of African Cyprinidae, a freshwater fish family with wide geographic distribution, were reconstructed and analysed. The overall diversification rate of African Cyprinidae is 0.08 species per million year (when extinction rate is very high, i.e., ε = 0.9) and 0.11 species per million year (when ε = 0). This overall rate is lower than the rate reported for African Cichlids, suggesting that African freshwaters might be less conducive for a rapid diversification of Cyprinidae. However, the observed diversification events of African Cyprinidae occurred in the last 10 million years. The temporal pattern of these events follows a non-constant episodic birth-death model (Bayes Factor > 28) and the rate-constant model never outperformed any of the non-constant models tested. The fact that most diversification events occurred in the last 10 million years supports the pattern reported for Cyprinidae in other continent, e.g., Asia, perhaps pointing to concomitant diversification globally. However, the diversification events coincided with major geologic and paleo-climatic events in Africa, suggesting that geological and climatic events may have mediated the diversification patterns of Cyprinidae on the continent.
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Affiliation(s)
- Mariam I Adeoba
- Department of Zoology, University of Johannesburg, Kingsway Campus PO Box 524, Auckland Park 2006, South Africa University of Johannesburg Johannesburg South Africa
| | - Kowiyou Yessoufou
- Department of Geography, Environmental management and Energy studies, University of Johannesburg, Kingsway Campus PO Box 524, Auckland Park 2006, South Africa University of Johannesburg Johannesburg South Africa
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197
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Nandamuri SP, Conte MA, Carleton KL. Multiple trans QTL and one cis-regulatory deletion are associated with the differential expression of cone opsins in African cichlids. BMC Genomics 2018; 19:945. [PMID: 30563463 PMCID: PMC6299527 DOI: 10.1186/s12864-018-5328-z] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2018] [Accepted: 11/28/2018] [Indexed: 01/22/2023] Open
Abstract
Background Dissecting the genetic basis of phenotypic diversity is one of the fundamental goals in evolutionary biology. Despite growing evidence for gene expression divergence being responsible for the evolution of complex traits, knowledge about the proximate genetic causes underlying these traits is still limited. African cichlids have diverse visual systems, with different species expressing different combinations of seven cone opsin genes. Using opsin expression variation in African cichlids as a model for gene expression evolution, this study aims to investigate the genetic architecture of opsin expression divergence in this group. Results Results from a genome-wide linkage mapping on the F2 progeny of an intergeneric cross, between two species with differential opsin expression show that opsins in Lake Malawi cichlids are controlled by multiple quantitative trait loci (QTLs). Most of these QTLs are located in trans to the opsins except for one cis-QTL for SWS1 on LG17. A closer look at this major QTL revealed the presence of a 691 bp deletion in the promoter of the SWS1 opsin (located 751 bp upstream of the start site) that is associated with a decrease in its expression. Phylogenetic footprinting indicates that the region spanning the deletion harbors a microRNA miR-729 and a conserved non-coding element (CNE) that also occurs in zebrafish and other teleosts. This suggests that the deletion might contain ancestrally preserved regulators that have been tuned for SWS1 gene expression in Lake Malawi. While this deletion is not common, it does occur in several other species within the lake. Conclusions Differential expression of cichlid opsins is associated with multiple overlapping QTL, with all but one in trans to the opsins they regulate. The one cis-acting factor is a deletion in the promoter of the SWS1 opsin, suggesting that ancestral polymorphic deletions may contribute to cichlid’s visual diversity. In addition to expanding our understanding of the molecular landscape of opsin expression in African cichlids, this study sheds light on the molecular mechanisms underlying phenotypic variation in natural populations. Electronic supplementary material The online version of this article (10.1186/s12864-018-5328-z) contains supplementary material, which is available to authorized users.
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Affiliation(s)
- Sri Pratima Nandamuri
- Department of Biology, University of Maryland, 1210 Biology / Psychology Bldg #144, College Park, MD, 20742, USA
| | - Matthew A Conte
- Department of Biology, University of Maryland, 1210 Biology / Psychology Bldg #144, College Park, MD, 20742, USA
| | - Karen L Carleton
- Department of Biology, University of Maryland, 1210 Biology / Psychology Bldg #144, College Park, MD, 20742, USA.
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198
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Johnson AM, Chang CH, Fuller RC. Testing the potential mechanisms for the maintenance of a genetic color polymorphism in bluefin killifish populations. Curr Zool 2018; 64:733-743. [PMID: 30538733 PMCID: PMC6280095 DOI: 10.1093/cz/zoy017] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2017] [Accepted: 02/28/2018] [Indexed: 02/03/2023] Open
Abstract
The maintenance of genetic variation in the face of natural selection is a long-standing question in evolutionary biology. In the bluefin killifish Lucania goodei, male coloration is polymorphic. Males can produce either red or yellow coloration in their anal fins, and both color morphs are present in all springs. These 2 morphs are heritable and how they are maintained in nature is unknown. Here, we tested 2 mechanisms for the maintenance of the red/yellow color morphs. Negative frequency-dependent mating success predicts that rare males have a mating advantage over common males. Spatial variation in fitness predicts that different color morphs have an advantage in different microhabitat types. Using a breeding experiment, we tested these hypotheses by creating populations with different ratios of red to yellow males (5 red:1 yellow; 1 red:5 yellow) and determining male mating success on shallow and deep spawning substrates. We found no evidence of negative frequency-dependent mating success. Common morphs tended to have higher mating success, and this was particularly so on shallow spawning substrates. However, on deep substrates, red males enjoyed higher mating success than yellow males, particularly so when red males were rare. However, yellow males did not have an advantage at either depth nor when rare. We suggest that preference for red males is expressed in deeper water, possibly due to alterations in the lighting environment. Finally, male pigment levels were correlated with one another and predicted male mating success. Hence, pigmentation plays an important role in male mating success.
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Affiliation(s)
- Ashley M Johnson
- Department of Animal Biology, School of Integrative Biology, University of Illinois at Urbana-Champaign, Champaign, IL, USA
| | - Chia-Hao Chang
- Department of Animal Biology, School of Integrative Biology, University of Illinois at Urbana-Champaign, Champaign, IL, USA
| | - Rebecca C Fuller
- Department of Animal Biology, School of Integrative Biology, University of Illinois at Urbana-Champaign, Champaign, IL, USA
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199
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Escalona Sulbarán MD, Ivo Simões P, Gonzalez-Voyer A, Castroviejo-Fisher S. Neotropical frogs and mating songs: The evolution of advertisement calls in glassfrogs. J Evol Biol 2018; 32:163-176. [PMID: 30481406 DOI: 10.1111/jeb.13406] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2018] [Revised: 11/19/2018] [Accepted: 11/20/2018] [Indexed: 02/04/2023]
Abstract
Anurans emit advertisement calls with the purpose of attracting mates and repelling conspecific competitors. The evolution of call traits is expected to be associated with the evolution of anatomical and behavioural traits due to the physics of call emission and transmission. The evolution of vocalizations might imply trade-offs with other energetically costly behaviours, such as parental care. Here, we investigated the association between body size, calling site, parental care and call properties (call duration, number of notes, peak frequency, frequency bandwidth and call structure) of the advertisement calls of glassfrogs (Centrolenidae)-a family of Neotropical, leaf-dwelling anurans-using phylogenetic comparative methods. We also explored the tempo and mode of evolution of these traits and compared them with those of three morphological traits associated with body size, locomotion and feeding. We generated and compiled acoustic data for 72 glassfrog species (46% of total species richness), including representatives of all genera. We found that almost all acoustic traits have significant, but generally modest, phylogenetic signal. Peak frequency of calls is significantly associated with body size, whereas call structure is significantly associated with calling site and paternal care. Thus, the evolution of body size, calling site and paternal care could constrain call evolution. The estimated disparity of acoustic traits was larger than that of morphological traits and the peak in disparity of acoustic traits generally occurred later in the evolution of glassfrogs, indicating a historically recent outset of the acoustic divergence in this clade.
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Affiliation(s)
- Moisés D Escalona Sulbarán
- Laboratório de Sistemática de Vertebrados, Pontifícia Universidade Católica do Rio Grande do Sul, Porto Alegre, Brazil
| | - Pedro Ivo Simões
- Laboratório de Sistemática de Vertebrados, Pontifícia Universidade Católica do Rio Grande do Sul, Porto Alegre, Brazil
| | - Alejandro Gonzalez-Voyer
- Instituto de Ecología, Departamento de Ecología Evolutiva, Universidad Nacional Autónoma de México, Ciudad de México, México
| | - Santiago Castroviejo-Fisher
- Laboratório de Sistemática de Vertebrados, Pontifícia Universidade Católica do Rio Grande do Sul, Porto Alegre, Brazil.,Department of Herpetology, American Museum of Natural History, New York City, New York
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200
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Ligon RA, Diaz CD, Morano JL, Troscianko J, Stevens M, Moskeland A, Laman TG, Scholes E. Evolution of correlated complexity in the radically different courtship signals of birds-of-paradise. PLoS Biol 2018; 16:e2006962. [PMID: 30457985 PMCID: PMC6245505 DOI: 10.1371/journal.pbio.2006962] [Citation(s) in RCA: 58] [Impact Index Per Article: 9.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2018] [Accepted: 10/17/2018] [Indexed: 12/25/2022] Open
Abstract
Ornaments used in courtship often vary wildly among species, reflecting the evolutionary interplay between mate preference functions and the constraints imposed by natural selection. Consequently, understanding the evolutionary dynamics responsible for ornament diversification has been a longstanding challenge in evolutionary biology. However, comparing radically different ornaments across species, as well as different classes of ornaments within species, is a profound challenge to understanding diversification of sexual signals. Using novel methods and a unique natural history dataset, we explore evolutionary patterns of ornament evolution in a group—the birds-of-paradise—exhibiting dramatic phenotypic diversification widely assumed to be driven by sexual selection. Rather than the tradeoff between ornament types originally envisioned by Darwin and Wallace, we found positive correlations among cross-modal (visual/acoustic) signals indicating functional integration of ornamental traits into a composite unit—the “courtship phenotype.” Furthermore, given the broad theoretical and empirical support for the idea that systemic robustness—functional overlap and interdependency—promotes evolutionary innovation, we posit that birds-of-paradise have radiated extensively through ornamental phenotype space as a consequence of the robustness in the courtship phenotype that we document at a phylogenetic scale. We suggest that the degree of robustness in courtship phenotypes among taxa can provide new insights into the relative influence of sexual and natural selection on phenotypic radiations. Animals frequently vary widely in ornamentation, even among closely related species. Understanding the patterns that underlie this variation is a significant challenge, requiring comparisons among drastically different traits—like comparing apples to oranges. Here, we use novel analytical approaches to quantify variation in ornamental diversity and richness across the wildly divergent birds-of-paradise, a textbook example of how sexual selection can profoundly shape organismal phenotypes. We find that color and acoustic complexity, along with behavior and acoustic complexity, are positively correlated across evolutionary timescales. Positive links among ornament classes suggests that selection is acting on correlated suites of traits—a composite courtship phenotype—and this integration may be partially responsible for the extreme variation in signal form that we see in birds-of-paradise.
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Affiliation(s)
- Russell A. Ligon
- Cornell Lab of Ornithology, Cornell University, Ithaca, New York, United States of America
- Department of Neurobiology and Behavior, Cornell University, Ithaca, New York, United States of America
- * E-mail:
| | - Christopher D. Diaz
- Cornell Lab of Ornithology, Cornell University, Ithaca, New York, United States of America
| | - Janelle L. Morano
- Cornell Lab of Ornithology, Cornell University, Ithaca, New York, United States of America
| | - Jolyon Troscianko
- Centre for Ecology and Conservation, College of Life and Environmental Science, University of Exeter, Penryn, United Kingdom
| | - Martin Stevens
- Centre for Ecology and Conservation, College of Life and Environmental Science, University of Exeter, Penryn, United Kingdom
| | - Annalyse Moskeland
- Cornell Lab of Ornithology, Cornell University, Ithaca, New York, United States of America
| | - Timothy G. Laman
- Museum of Comparative Zoology, Harvard University, Cambridge, Massachusetts, United States of America
| | - Edwin Scholes
- Cornell Lab of Ornithology, Cornell University, Ithaca, New York, United States of America
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