151
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Soukoulis V, Savikhin S, Xu W, Chitnis PR, Struve WS. Electronic spectra of PS I mutants: the peripheral subunits do not bind red chlorophylls in Synechocystis sp. PCC 6803. Biophys J 1999; 76:2711-5. [PMID: 10233085 PMCID: PMC1300240 DOI: 10.1016/s0006-3495(99)77423-0] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022] Open
Abstract
Steady-state fluorescence and absorption spectra have been obtained in the Qy spectral region (690-780 nm and 600-750 nm, respectively) for several subunit-deficient photosystem I mutants from the cyanobacterium Synechocystis sp. PCC 6803. The 77 K fluorescence spectra of the wild-type and subunit-deficient mutant photosystem I particles are all very similar, peaking at approximately 720 nm with essentially the same excitation spectrum. Because emission from far-red chlorophylls absorbing near 708 nm dominates low-temperature fluorescence in Synechocystis sp., these pigments are not coordinated to any the subunits PsaF, Psa I, PsaJ, PsaK, PsaL, or psaM. The room temperature (wild-type-mutant) absorption difference spectra for trimeric mutants lacking the PsaF/J, PsaK, and PsaM subunits suggest that these mutants are deficient in core antenna chlorophylls (Chls) absorbing near 685, 670, 675, and 700 nm, respectively. The absorption difference spectrum for the PsaF/J/I/L-deficient photosystem I complexes at 5 K reveals considerably more structure than the room-temperature spectrum. The integrated absorbance difference spectra (when normalized to the total PS I Qy spectral area) are comparable to the fractions of Chls bound by the respective (groups of) subunits, according to the 4-A density map of PS I from Synechococcus elongatus. The spectrum of the monomeric PsaL-deficient mutant suggests that this subunit may bind pigments absorbing near 700 nm.
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Affiliation(s)
- V Soukoulis
- Ames Laboratory, U.S. Department of Energy, and Department of Chemistry, Iowa State University, Ames, Iowa 50011, USA
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152
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The biogenesis and assembly of photosynthetic proteins in thylakoid membranes1. BIOCHIMICA ET BIOPHYSICA ACTA 1999; 1411:21-85. [PMID: 10216153 DOI: 10.1016/s0005-2728(99)00043-2] [Citation(s) in RCA: 153] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
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153
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Zak E, Norling B, Andersson B, Pakrasi HB. Subcellular localization of the BtpA protein in the cyanobacterium Synechocystis sp. PCC 6803. EUROPEAN JOURNAL OF BIOCHEMISTRY 1999; 261:311-6. [PMID: 10103064 DOI: 10.1046/j.1432-1327.1999.00281.x] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Abstract
Photosystem I is a large pigment-protein complex embedded in the thylakoid membranes of chloroplasts and cyanobacteria. In the cyanobacterium Synechocystis sp. PCC 6803, the btpA gene encodes a 30-kDa polypeptide. Mutations in this gene significantly affect accumulation of the reaction center proteins of photosystem I in Synechocystis 6803 [Bartsevich, V. V. & Pakrasi, H. B. (1997) J. Biol. Chem. 272, 6372-6378]. We describe here the intracellular localization of the BtpA protein. Immunolocalization in Synechocystis 6803 cells demonstrated that the BtpA protein is tightly associated with the thylakoid membranes. Phase fractionation in the detergent Triton X-114 indicated that BtpA is a peripheral membrane protein. To determine which surface of the thylakoid membrane BtpA is exposed to, we used a two-phase polymer partitioning technique to develop a novel method to isolate inside-out and right-side-out thylakoid vesicles from Synechocystis 6803. Treatments of such vesicles with different salts and protease showed that the BtpA protein is an extrinsic membrane protein which is exposed to the cytoplasmic face of the thylakoid membrane.
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Affiliation(s)
- E Zak
- Department of Biology, Washington University, St Louis, MO 63130, USA
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154
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Klukas O, Schubert WD, Jordan P, Krauss N, Fromme P, Witt HT, Saenger W. Photosystem I, an improved model of the stromal subunits PsaC, PsaD, and PsaE. J Biol Chem 1999; 274:7351-60. [PMID: 10066799 DOI: 10.1074/jbc.274.11.7351] [Citation(s) in RCA: 73] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022] Open
Abstract
An improved electron density map of photosystem I (PSI) calculated at 4-A resolution yields a more detailed structural model of the stromal subunits PsaC, PsaD, and PsaE than previously reported. The NMR structure of the subunit PsaE of PSI from Synechococcus sp. PCC7002 (Falzone, C. J., Kao, Y.-H., Zhao, J., Bryant, D. A., and Lecomte, J. T. J. (1994) Biochemistry 33, 6052-6062) has been used as a model to interpret the region of the electron density map corresponding to this subunit. The spatial orientation with respect to other subunits is described as well as the possible interactions between the stromal subunits. A first model of PsaD consisting of a four-stranded beta-sheet and an alpha-helix is suggested, indicating that this subunit partly shields PsaC from the stromal side. In addition to the improvements on the stromal subunits, the structural model of the membrane-integral region of PSI is also extended. The current electron density map allows the identification of the N and C termini of the subunits PsaA and PsaB. The 11-transmembrane alpha-helices of these subunits can now be assigned uniquely to the hydrophobic segments identified by hydrophobicity analyses.
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Affiliation(s)
- O Klukas
- Institut für Kristallographie, Freie Universität Berlin, Takustrassett 6, D-14195 Berlin, Germany
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155
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Klukas O, Schubert WD, Jordan P, Krau N, Fromme P, Witt HT, Saenger W. Localization of two phylloquinones, QK and QK', in an improved electron density map of photosystem I at 4-A resolution. J Biol Chem 1999; 274:7361-7. [PMID: 10066800 DOI: 10.1074/jbc.274.11.7361] [Citation(s) in RCA: 65] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022] Open
Abstract
An improved electron density map of photosystem I from Synechococcus elongatus calculated at 4-A resolution for the first time reveals a second phylloquinone molecule and thereby completes the set of cofactors constituting the electron transfer system of this iron-sulfur type photosynthetic reaction center: six chlorophyll a, two phylloquinones, and three Fe4S4 clusters. The location of the newly identified phylloquinone pair, the individual plane orientations of these molecules, and the resulting distances to other cofactors of the electron transfer system are discussed and compared with those determined by magnetic resonance techniques.
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Affiliation(s)
- O Klukas
- Institut für Kristallographie, Freie Universität Berlin, Takustrasse 6, D-14195 Berlin, Germany
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156
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Hippler M, Drepper F, Rochaix JD, Mühlenhoff U. Insertion of the N-terminal part of PsaF from Chlamydomonas reinhardtii into photosystem I from Synechococcus elongatus enables efficient binding of algal plastocyanin and cytochrome c6. J Biol Chem 1999; 274:4180-8. [PMID: 9933614 DOI: 10.1074/jbc.274.7.4180] [Citation(s) in RCA: 60] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022] Open
Abstract
A strain of the cyanobacterium Synechococcus elongatus was generated that expresses a hybrid version of the photosystem I subunit PsaF consisting of the first 83 amino acids of PsaF from the green alga Chlamydomonas reinhardtii fused to the C-terminal portion of PsaF from S. elongatus. The corresponding modified gene was introduced into the genome of the psaF-deletion strain FK2 by cointegration with an antibiotic resistance gene. The transformants express a new PsaF subunit similar in size to PsaF from C. reinhardtii that is assembled into photosystem I (PSI). Hybrid PSI complexes isolated from these strains show an increase by 2 or 3 orders of magnitude in the rate of P700(+) reduction by C. reinhardtii cytochrome c6 or plastocyanin in 30% of the complexes as compared with wild type cyanobacterial PSI. The corresponding optimum second-order rate constants (k2 = 4.0 and 1.7 x 10(7) M1 s1 for cytochrome c6 and plastocyanin) are similar to those of PSI from C. reinhardtii. The remaining complexes are reduced at a slow rate similar to that observed with wild type PSI from S. elongatus and the algal donors. At high concentrations of C. reinhardtii cytochrome c6, a fast first-order kinetic component (t(1)/(2) = 4 microseconds) is revealed, indicative of intramolecular electron transfer within a complex between the hybrid PSI and cytochrome c6. This first-order phase is characteristic for P700(+) reduction by cytochrome c6 or plastocyanin in algae and higher plants. However, a similar fast phase is not detected for plastocyanin. Cross-linking studies show that, in contrast to PSI from wild type S. elongatus, the chimeric PsaF of PSI from the transformed strain cross-links to cytochrome c6 or plastocyanin with a similar efficiency as PsaF from C. reinhardtii PSI. Our data indicate that development of a eukaryotic type of reaction mechanism for binding and electron transfer between PSI and its electron donors required structural changes in both PSI and cytochrome c6 or plastocyanin.
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Affiliation(s)
- M Hippler
- Department of Molecular Biology and Plant Biology, University of Geneva, 30 Quai Ernest Ansermet, CH-1211 Geneva, Switzerland
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157
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Affiliation(s)
- J Barber
- Wolfson Laboratories, Biochemistry Dept, Imperial College of Science, Technology and Medicine, London, UK
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158
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Jin P, Sun J, Chitnis PR. Structural features and assembly of the soluble overexpressed PsaD subunit of photosystem I. BIOCHIMICA ET BIOPHYSICA ACTA 1999; 1410:7-18. [PMID: 10076011 DOI: 10.1016/s0005-2728(98)00169-8] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Abstract
PsaD is a peripheral protein on the reducing side of photosystem I (PS I). We expressed the psaD gene from the thermophilic cyanobacterium Mastigocladus laminosus in Escherichia coli and obtained a soluble protein with a polyhistidine tag at the carboxyl terminus. The soluble PsaD protein was purified by Ni-affinity chromatography and had a mass of 16716 Da by MALDI-TOF. The N-terminal amino acid sequence of the overexpressed PsaD matched the N-terminal sequence of the native PsaD from M. laminosus. The soluble PsaD could assemble into the PsaD-less PS I. As determined by isothermal titration calorimetry, PsaD bound to PS I with 1.0 binding site per PS I, the binding constant of 7.7x10(6) M-1, and the enthalpy change of -93.6 kJ mol-1. This is the first time that the binding constant and binding heat have been determined in the assembly of any photosynthetic membrane protein. To identify the surface-exposed domains, purified PS I complexes and overexpressed PsaD were treated with N-hydroxysuccinimidobiotin (NHS-biotin) and biotin-maleimide, and the biotinylated residues were mapped. The Cys66, Lys21, Arg118 and Arg119 residues were exposed on the surface of soluble PsaD whereas the Lys129 and Lys131 residues were not exposed on the surface. Consistent with the X-ray crystallographic studies on PS I, circular dichroism spectroscopy revealed that PsaD contains a small proportion of alpha-helical conformation.
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Affiliation(s)
- P Jin
- Department of Biochemistry and Biophysics, Iowa State University, 4156 Molecular Biology Building, Ames, IA 50011, USA
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159
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Liu LP, Deber CM. Combining hydrophobicity and helicity: a novel approach to membrane protein structure prediction. Bioorg Med Chem 1999; 7:1-7. [PMID: 10199651 DOI: 10.1016/s0968-0896(98)00233-8] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
Abstract
In spite of the overwhelming numbers and critical biological functions of membrane proteins, only a few have been characterized by high-resolution structural techniques. From the structures that are known, it is seen that their transmembrane (TM) segments tend to fold most often into alpha-helices. To evaluate systematically the features of these TM segments, we have taken two approaches: (1) using the experimentally-measured residence behavior of specifically designed hydrophobic peptides in RP-HPLC, a scale was derived based directly on the properties of individual amino acids incorporated into membrane-interactive helices: and (2) the relative alpha-helical propensity of each of the 20 amino acids was measured in the organic non-polar environment of n-butanol. By combining the resulting hydrophobicity and helical propensity data, in conjunction with consideration of the 'threshold hydrophobicity' required for spontaneous membrane integration of protein segments, an approach was developed for prediction of TM segments wherein each must fulfill the dual requirements of hydrophobicity and helicity. Evaluated against the available high-resolution structural data on membrane proteins, the present combining method is shown to provide accurate predictions for the locations of TM helices. In contrast, no segment in soluble proteins was predicted as a 'TM helix'.
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Affiliation(s)
- L P Liu
- Research Institute, Hospital for Sick Children, Department of Biochemistry, University of Toronto, Ontario, Canada
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160
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Guigliarelli B, Bertrand P. Application of EPR Spectroscopy to the Structural and Functional Study of Iron-Sulfur Proteins. ADVANCES IN INORGANIC CHEMISTRY 1999. [DOI: 10.1016/s0898-8838(08)60084-7] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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161
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162
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Mac M, Bowlby NR, Babcock GT, McCracken J. Monomeric Spin Density Distribution in the Primary Donor of Photosystem I as Determined by Electron Magnetic Resonance: Functional and Thermodynamic Implications. J Am Chem Soc 1998. [DOI: 10.1021/ja982662i] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Michelle Mac
- Contribution from the Departments of Chemistry and Biochemistry, Michigan State University, East Lansing, Michigan 48824
| | - Neil R. Bowlby
- Contribution from the Departments of Chemistry and Biochemistry, Michigan State University, East Lansing, Michigan 48824
| | - Gerald T. Babcock
- Contribution from the Departments of Chemistry and Biochemistry, Michigan State University, East Lansing, Michigan 48824
| | - John McCracken
- Contribution from the Departments of Chemistry and Biochemistry, Michigan State University, East Lansing, Michigan 48824
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163
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Rhee KH, Morris EP, Barber J, Kühlbrandt W. Three-dimensional structure of the plant photosystem II reaction centre at 8 A resolution. Nature 1998; 396:283-6. [PMID: 9834037 DOI: 10.1038/24421] [Citation(s) in RCA: 256] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
Photosystem II is a multisubunit enzyme complex involved in plant photosynthesis. It uses solar energy to catalyse the breakdown of water to reducing equivalents and molecular oxygen. Native photosystem II comprises more than 25 different subunits, and has a relative molecular mass of more than 600K. Here we report the three-dimensional structure of a photosystem II subcomplex, containing the proteins D1, D2, CP47 and cytochrome b-559, determined by electron crystallography. This CP47 reaction centre, which has a relative molecular mass of 160K, can perform light-mediated energy and electron-transfer reactions but is unable to oxidize water. The complex contains 23 transmembrane alpha-helices, of which 16 have been assigned to the D1, D2 and CP47 proteins. The arrangement of these helices is remarkably similar to that of the helices in the reaction centres of purple bacteria and of plant photosystem I, indicating a common evolutionary origin for these assemblies. The map suggests that redox cofactors in the D1-D2 complex are located in positions analogous to those in the bacterial reaction centre, but the distance between the chlorophylls corresponding to the bacterial 'special pair' is significantly larger.
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Affiliation(s)
- K H Rhee
- Max-Planck-Institut für Biophysik, Abteilung Strukturbiologie, Frankfurt am Main, Germany
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164
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Kitmitto A, Mustafa AO, Holzenburg A, Ford RC. Three-dimensional structure of higher plant photosystem I determined by electron crystallography. J Biol Chem 1998; 273:29592-9. [PMID: 9792668 DOI: 10.1074/jbc.273.45.29592] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022] Open
Abstract
We describe the three-dimensional structure of higher plant photosystem I (PSI) as obtained by electron microscopy of two-dimensional crystals formed at the grana margins of thylakoid membranes. The negatively stained crystalline areas displayed unit cell dimensions a = 26.6 nm, b = 27.7 nm, and gamma = 90(o), and p22121 plane group symmetry consisting of two monomers facing upward and two monomers facing downward with respect to the membrane plane. Higher plant PSI shows several structural similarities to the cyanobacterial PSI complex, with a prominent ridge on the stromal side of the complex. The stromal ridge is resolved into at least three separate domains that are interpreted as representing the three well characterized stromal subunits, the psa C, D, and E gene products. The lumenal surface is relatively flat but exhibits a distinct central depression that may be the binding site for plastocyanin. Higher plant PSI is of dimensions 15-16 x 11-12.5 nm, and thus leaves a larger footprint in the membrane than its cyanobacterial equivalent (13 x 10.5 nm). It is expected that additional membrane-bound polypeptides will be present in the higher plant PSI. Both higher plant and cyanobacterial complexes span about 8-9 nm in the direction orthogonal to the membrane. This report represents the first three-dimensional structure for the higher plant PSI complex.
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Affiliation(s)
- A Kitmitto
- Department of Biomolecular Sciences, UMIST, Manchester, M60 1QD, United Kingdom
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165
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Abstract
The reaction center is the key component for the primary events in the photochemical conversion of light into chemical energy. After excitation by light, a charge separation that spans the cell membrane is formed in the reaction center in a few hundred picoseconds with a quantum yield of essentially one. A conserved pattern in the cofactors and core proteins of reaction centers from different organisms can be defined based on comparisons of the three dimensional structure of two types of reaction centers. Different functional aspects of the reaction center are discussed, including the properties of the bacteriochlorophyll or chlorophyll dimer that constitutes the primary electron donor, the pathway of electron transfer, and the different functional roles of the electron acceptors. The implication of these results on the evolution of the reaction center is presented.
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Affiliation(s)
- J P Allen
- Department of Chemistry and Biochemistry and Center for the Study of Early Events in Photosynthesis, Arizona State University, Tempe 85287-1604, USA.
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166
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Hu Q, Miyashita H, Iwasaki I, Kurano N, Miyachi S, Iwaki M, Itoh S. A photosystem I reaction center driven by chlorophyll d in oxygenic photosynthesis. Proc Natl Acad Sci U S A 1998; 95:13319-23. [PMID: 9789086 PMCID: PMC23797 DOI: 10.1073/pnas.95.22.13319] [Citation(s) in RCA: 139] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
A far-red type of oxygenic photosynthesis was discovered in Acaryochloris marina, a recently found marine prokaryote that produces an atypical pigment chlorophyll d (Chl d). The purified photosystem I reaction center complex of A. marina contained 180 Chl d per 1 Chl a with PsaA-F, -L, -K, and two extra polypeptides. Laser excitation induced absorption changes of reaction center Chl d that was named P740 after its peak wavelength. A midpoint oxidation reduction potential of P740 was determined to be +335 mV. P740 uses light of significantly low quantum energy (740 nm = 1.68 eV) but generates a reducing power almost equivalent to that produced by a special pair of Chl a (P700) that absorbs red light at 700 nm (1.77 eV) in photosystem I of plants and cyanobacteria. The oxygenic photosynthesis based on Chl d might either be an acclimation to the far-red light environments or an evolutionary intermediate between the red-absorbing oxygenic and the far-red absorbing anoxygenic photosynthesis that uses bacteriochlorophylls.
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Affiliation(s)
- Q Hu
- Marine Biotechnology Institute, Kamaishi Laboratories, Heita, Kamaishi City, Iwate 026, Japan
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167
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Sticht H, Rösch P. The structure of iron-sulfur proteins. PROGRESS IN BIOPHYSICS AND MOLECULAR BIOLOGY 1998; 70:95-136. [PMID: 9785959 DOI: 10.1016/s0079-6107(98)00027-3] [Citation(s) in RCA: 114] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Ferredoxins are a group of iron-sulfur proteins for which a wealth of structural and mutational data have recently become available. Previously unknown structures of ferredoxins which are adapted to halophilic, acidophilic or hyperthermophilic environments and new cysteine patterns for cluster ligation and non-cysteine cluster ligation have been described. Site-directed mutagenesis experiments have given insight into factors that influence the geometry, stability, redox potential, electronic properties and electron-transfer reactivity of iron-sulfur clusters.
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Affiliation(s)
- H Sticht
- Lehrstuhl für Struktur und Chemie der Biopolymere, Universität Bayreuth, Germany.
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168
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Hippler M, Redding K, Rochaix JD. Chlamydomonas genetics, a tool for the study of bioenergetic pathways. BIOCHIMICA ET BIOPHYSICA ACTA 1998; 1367:1-62. [PMID: 9784589 DOI: 10.1016/s0005-2728(98)00136-4] [Citation(s) in RCA: 56] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Affiliation(s)
- M Hippler
- Departments of Molecular Biology and Plant Biology, University of Geneva, 30 Quai Ernest Ansermet, 1211 Geneva-4, Switzerland
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169
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Sun J, Ke A, Jin P, Chitnis VP, Chitnis PR. Isolation and functional study of photosystem I subunits in the cyanobacterium Synechocystis sp. PCC 6803. Methods Enzymol 1998; 297:124-39. [PMID: 9750206 DOI: 10.1016/s0076-6879(98)97010-0] [Citation(s) in RCA: 39] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Affiliation(s)
- J Sun
- Department of Biochemistry and Biophysics, Iowa State University, Ames 50011, USA
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170
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Kamlowski A, Zech SG, Fromme P, Bittl R, Lubitz W, Witt HT, Stehlik D. The Radical Pair State in Photosystem I Single Crystals: Orientation Dependence of the Transient Spin-Polarized EPR Spectra. J Phys Chem B 1998. [DOI: 10.1021/jp9817022] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Andreas Kamlowski
- Institut für Experimentalphysik, Freie Universität Berlin, Arnimallee 14, 14195 Berlin, Germany, and Max-Volmer-Institut für Biophysikalische Chemie und Biochemie, Technische Universität Berlin, Strasse des 17 Juni 135, 10623 Berlin, Germany
| | - Stephan G. Zech
- Institut für Experimentalphysik, Freie Universität Berlin, Arnimallee 14, 14195 Berlin, Germany, and Max-Volmer-Institut für Biophysikalische Chemie und Biochemie, Technische Universität Berlin, Strasse des 17 Juni 135, 10623 Berlin, Germany
| | - Petra Fromme
- Institut für Experimentalphysik, Freie Universität Berlin, Arnimallee 14, 14195 Berlin, Germany, and Max-Volmer-Institut für Biophysikalische Chemie und Biochemie, Technische Universität Berlin, Strasse des 17 Juni 135, 10623 Berlin, Germany
| | - Robert Bittl
- Institut für Experimentalphysik, Freie Universität Berlin, Arnimallee 14, 14195 Berlin, Germany, and Max-Volmer-Institut für Biophysikalische Chemie und Biochemie, Technische Universität Berlin, Strasse des 17 Juni 135, 10623 Berlin, Germany
| | - Wolfgang Lubitz
- Institut für Experimentalphysik, Freie Universität Berlin, Arnimallee 14, 14195 Berlin, Germany, and Max-Volmer-Institut für Biophysikalische Chemie und Biochemie, Technische Universität Berlin, Strasse des 17 Juni 135, 10623 Berlin, Germany
| | - Horst T. Witt
- Institut für Experimentalphysik, Freie Universität Berlin, Arnimallee 14, 14195 Berlin, Germany, and Max-Volmer-Institut für Biophysikalische Chemie und Biochemie, Technische Universität Berlin, Strasse des 17 Juni 135, 10623 Berlin, Germany
| | - Dietmar Stehlik
- Institut für Experimentalphysik, Freie Universität Berlin, Arnimallee 14, 14195 Berlin, Germany, and Max-Volmer-Institut für Biophysikalische Chemie und Biochemie, Technische Universität Berlin, Strasse des 17 Juni 135, 10623 Berlin, Germany
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171
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Kamlowski A, Altenberg-Greulich B, van der Est A, Zech SG, Bittl R, Fromme P, Lubitz W, Stehlik D. The Quinone Acceptor A1 in Photosystem I: Binding Site, and Comparison to QA in Purple Bacteria Reaction Centers. J Phys Chem B 1998. [DOI: 10.1021/jp9824611] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Andreas Kamlowski
- Institut für Experimentalphysik, Freie Universität Berlin, Arnimallee 14, 14195 Berlin, Germany; European Molecular Biology Laboratory, Abt. Biocomputing, Meyerhofstr. 1, 69117 Heidelberg, Germany; and Max-Volmer-Institut für Biophysikalische Chemie und Biochemie, Technische Universität Berlin, Strasse des 17. Juni 135, 10623 Berlin, Germany
| | - Brigitte Altenberg-Greulich
- Institut für Experimentalphysik, Freie Universität Berlin, Arnimallee 14, 14195 Berlin, Germany; European Molecular Biology Laboratory, Abt. Biocomputing, Meyerhofstr. 1, 69117 Heidelberg, Germany; and Max-Volmer-Institut für Biophysikalische Chemie und Biochemie, Technische Universität Berlin, Strasse des 17. Juni 135, 10623 Berlin, Germany
| | - Arthur van der Est
- Institut für Experimentalphysik, Freie Universität Berlin, Arnimallee 14, 14195 Berlin, Germany; European Molecular Biology Laboratory, Abt. Biocomputing, Meyerhofstr. 1, 69117 Heidelberg, Germany; and Max-Volmer-Institut für Biophysikalische Chemie und Biochemie, Technische Universität Berlin, Strasse des 17. Juni 135, 10623 Berlin, Germany
| | - Stephan G. Zech
- Institut für Experimentalphysik, Freie Universität Berlin, Arnimallee 14, 14195 Berlin, Germany; European Molecular Biology Laboratory, Abt. Biocomputing, Meyerhofstr. 1, 69117 Heidelberg, Germany; and Max-Volmer-Institut für Biophysikalische Chemie und Biochemie, Technische Universität Berlin, Strasse des 17. Juni 135, 10623 Berlin, Germany
| | - Robert Bittl
- Institut für Experimentalphysik, Freie Universität Berlin, Arnimallee 14, 14195 Berlin, Germany; European Molecular Biology Laboratory, Abt. Biocomputing, Meyerhofstr. 1, 69117 Heidelberg, Germany; and Max-Volmer-Institut für Biophysikalische Chemie und Biochemie, Technische Universität Berlin, Strasse des 17. Juni 135, 10623 Berlin, Germany
| | - Petra Fromme
- Institut für Experimentalphysik, Freie Universität Berlin, Arnimallee 14, 14195 Berlin, Germany; European Molecular Biology Laboratory, Abt. Biocomputing, Meyerhofstr. 1, 69117 Heidelberg, Germany; and Max-Volmer-Institut für Biophysikalische Chemie und Biochemie, Technische Universität Berlin, Strasse des 17. Juni 135, 10623 Berlin, Germany
| | - Wolfgang Lubitz
- Institut für Experimentalphysik, Freie Universität Berlin, Arnimallee 14, 14195 Berlin, Germany; European Molecular Biology Laboratory, Abt. Biocomputing, Meyerhofstr. 1, 69117 Heidelberg, Germany; and Max-Volmer-Institut für Biophysikalische Chemie und Biochemie, Technische Universität Berlin, Strasse des 17. Juni 135, 10623 Berlin, Germany
| | - Dietmar Stehlik
- Institut für Experimentalphysik, Freie Universität Berlin, Arnimallee 14, 14195 Berlin, Germany; European Molecular Biology Laboratory, Abt. Biocomputing, Meyerhofstr. 1, 69117 Heidelberg, Germany; and Max-Volmer-Institut für Biophysikalische Chemie und Biochemie, Technische Universität Berlin, Strasse des 17. Juni 135, 10623 Berlin, Germany
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172
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Sabra MC, Uitdehaag JC, Watts A. General model for lipid-mediated two-dimensional array formation of membrane proteins: application to bacteriorhodopsin. Biophys J 1998; 75:1180-8. [PMID: 9726920 PMCID: PMC1299793 DOI: 10.1016/s0006-3495(98)74037-8] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023] Open
Abstract
Based on experimental evidence for 2D array formation of bacteriorhodopsin, we propose a general model for lipid-mediated 2D array formation of membrane proteins in lipid bilayers. The model includes two different lipid species, "annular" lipids and "neutral" lipids, and one protein species. The central assumption of the model is that the annular lipids interact more strongly with the protein than with the neutral lipids. Monte Carlo simulations performed on this model show that 2D arrays of proteins only form when there are annular lipids present. In addition, no arrays form if all of the lipids present are annular lipids. The geometry of the observed arrays is for the most part hexagonal. However, for a certain range of low annular lipid/protein ratios, arrays form that have geometries other than hexagonal. Using the assumption that the hydrocarbon chains of the annular lipids are restricted in motion when close to a protein, we expand the model to include a ground state and an excited state of the annular lipids. The main result from the extended model is that within a certain temperature range, increasing the temperature will lead to larger and more regular protein arrays.
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Affiliation(s)
- M C Sabra
- Department of Biochemistry, University of Oxford, England
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173
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Yang F, Shen G, Schluchter WM, Zybailov BL, Ganago AO, Vassiliev IR, Bryant DA, Golbeck JH. Deletion of the PsaF Polypeptide Modifies the Environment of the Redox-Active Phylloquinone (A1). Evidence for Unidirectionality of Electron Transfer in Photosystem I. J Phys Chem B 1998. [DOI: 10.1021/jp981952i] [Citation(s) in RCA: 57] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Fan Yang
- Department of Chemistry, University of Nebraska, Lincoln, Nebraska 68588, and Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, Pennsylvania 16802
| | - Gaozhong Shen
- Department of Chemistry, University of Nebraska, Lincoln, Nebraska 68588, and Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, Pennsylvania 16802
| | - Wendy M. Schluchter
- Department of Chemistry, University of Nebraska, Lincoln, Nebraska 68588, and Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, Pennsylvania 16802
| | - Boris L. Zybailov
- Department of Chemistry, University of Nebraska, Lincoln, Nebraska 68588, and Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, Pennsylvania 16802
| | - Alexander O. Ganago
- Department of Chemistry, University of Nebraska, Lincoln, Nebraska 68588, and Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, Pennsylvania 16802
| | - Ilya R. Vassiliev
- Department of Chemistry, University of Nebraska, Lincoln, Nebraska 68588, and Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, Pennsylvania 16802
| | - Donald A. Bryant
- Department of Chemistry, University of Nebraska, Lincoln, Nebraska 68588, and Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, Pennsylvania 16802
| | - John H. Golbeck
- Department of Chemistry, University of Nebraska, Lincoln, Nebraska 68588, and Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, Pennsylvania 16802
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174
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Sashima T, Abe M, Kurano N, Miyachi S, Koyama Y. Changes in the Carbon−Carbon and Carbon−Nitrogen Bond Orders in the Macrocycle of Chlorophyll a upon Singlet and Triplet Excitation As Probed by Resonance Raman Spectroscopy of Natural-Abundance and Singly and Doubly Labeled Species with 15N, 13C, and 2H Isotopes. J Phys Chem B 1998. [DOI: 10.1021/jp981118t] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Tokutake Sashima
- Faculty of Science, Kwansei Gakuin University, Uegahara, Nishinomiya 662, Japan, Department of Domestic Science, Shoin Women's College, Obanoyama-cho, Shinohara, Nada-ku, Kobe 657, Japan, Marine Biotechnology Institute, Kamaishi Laboratories, 3-75-1 Heita, Kamaishi, Iwate 026, Japan, and Marine Biotechnology Institute, 1-28-10 Hongo, Bunkyo-ku, Tokyo 113, Japan
| | - Motoko Abe
- Faculty of Science, Kwansei Gakuin University, Uegahara, Nishinomiya 662, Japan, Department of Domestic Science, Shoin Women's College, Obanoyama-cho, Shinohara, Nada-ku, Kobe 657, Japan, Marine Biotechnology Institute, Kamaishi Laboratories, 3-75-1 Heita, Kamaishi, Iwate 026, Japan, and Marine Biotechnology Institute, 1-28-10 Hongo, Bunkyo-ku, Tokyo 113, Japan
| | - Norihide Kurano
- Faculty of Science, Kwansei Gakuin University, Uegahara, Nishinomiya 662, Japan, Department of Domestic Science, Shoin Women's College, Obanoyama-cho, Shinohara, Nada-ku, Kobe 657, Japan, Marine Biotechnology Institute, Kamaishi Laboratories, 3-75-1 Heita, Kamaishi, Iwate 026, Japan, and Marine Biotechnology Institute, 1-28-10 Hongo, Bunkyo-ku, Tokyo 113, Japan
| | - Shigetoh Miyachi
- Faculty of Science, Kwansei Gakuin University, Uegahara, Nishinomiya 662, Japan, Department of Domestic Science, Shoin Women's College, Obanoyama-cho, Shinohara, Nada-ku, Kobe 657, Japan, Marine Biotechnology Institute, Kamaishi Laboratories, 3-75-1 Heita, Kamaishi, Iwate 026, Japan, and Marine Biotechnology Institute, 1-28-10 Hongo, Bunkyo-ku, Tokyo 113, Japan
| | - Yasushi Koyama
- Faculty of Science, Kwansei Gakuin University, Uegahara, Nishinomiya 662, Japan, Department of Domestic Science, Shoin Women's College, Obanoyama-cho, Shinohara, Nada-ku, Kobe 657, Japan, Marine Biotechnology Institute, Kamaishi Laboratories, 3-75-1 Heita, Kamaishi, Iwate 026, Japan, and Marine Biotechnology Institute, 1-28-10 Hongo, Bunkyo-ku, Tokyo 113, Japan
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175
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Abstract
The light-harvesting complex I (LH-I) of Rhodobacter sphaeroides has been modeled computationally as a hexadecamer of alphabeta-heterodimers, based on a close homology of the heterodimer to that of light-harvesting complex II (LH-II) of Rhodospirillum molischianum. The resulting LH-I structure yields an electron density projection map that is in agreement with an 8.5-A resolution electron microscopic projection map for the highly homologous LH-I of Rs. rubrum. A complex of the modeled LH-I with the photosynthetic reaction center of the same species has been obtained by a constrained conformational search. This complex and the available structures of LH-II from Rs. molischianum and Rhodopseudomonas acidophila furnish a complete model of the pigment organization in the photosynthetic membrane of purple bacteria.
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Affiliation(s)
- X Hu
- Beckman Institute and Department of Physics, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801 USA
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176
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Rogl H, Kosemund K, Kühlbrandt W, Collinson I. Refolding of Escherichia coli produced membrane protein inclusion bodies immobilised by nickel chelating chromatography. FEBS Lett 1998; 432:21-6. [PMID: 9710243 DOI: 10.1016/s0014-5793(98)00825-4] [Citation(s) in RCA: 138] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Two distinctly different membrane proteins, which produced inclusion bodies in Escherichia coli, have been refolded to reconstitute properties appropriate to their native counterparts. The method employed utilises nickel chelating chromatography, where the solubilised inclusion bodies bind, refold and elute. Our aims were to release a large pool of membrane protein for functional, mutational and crystallisation screening studies. It is hoped that the methods described here will have a general application for other membrane proteins which have formed inclusion bodies.
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Affiliation(s)
- H Rogl
- Max-Planck-Institut für Biophysik, Frankfurt am Main, Germany
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177
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Naver H, Scott MP, Golbeck JH, Olsen CE, Scheller HV. The eight-amino acid internal loop of PSI-C mediates association of low molecular mass iron-sulfur proteins with the P700-FX core in photosystem I. J Biol Chem 1998; 273:18778-83. [PMID: 9668051 DOI: 10.1074/jbc.273.30.18778] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022] Open
Abstract
The PSI-C subunit of photosystem I (PS I) shows similarity to soluble 2[4Fe-4S] ferredoxins. PSI-C contains an eight residue internal loop and a 15 residue C-terminal extension which are absent in the ferredoxins. The eight-residue loop has been shown to interact with PSI-A/PSI-B (Naver, H., Scott, M. P., Golbeck, J. H., Moller, B. L., and Scheller, H. V. (1996) J. Biol. Chem. 271, 8996-9001). Four mutant proteins were constructed. Two were modified barley PSI-C proteins, one lacking the loop and the C terminus (PSI-Ccore) and one where the loop replace the C-terminal extension (PSI-CcoreLc-term). Two were modified Clostridium pasteurianum ferredoxins, one with the loop of barley PSI-C and one with both the loop and the C terminus of PSI-C. Wild-type proteins and the mutants were used to reconstitute barley P700-FX cores lacking PSI-C, -D, and-E. Western blotting showed that PSI-CcoreLc-term binds to PS I, whereas PSI-Ccore does not. Without PSI-D the PSI-CcoreLc-term mutant accepts electrons from FX in contrast to PSI-C mutants without the loop. Flash photolysis of P700-FX cores reconstituted with C. pasteurianum ferredoxin showed that only the ferredoxin mutants with the loop accepted electrons from FX. From this, it is concluded that the loop of PSI-C is necessary and sufficient for the association between PS I and PSI-C, and that the loop is functional as an interaction domain even when positioned at the C terminus of PSI-C or on a low molecular mass, soluble ferredoxin.
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Affiliation(s)
- H Naver
- Plant Biochemistry Laboratory, Department of Plant Biology, The Royal Veterinary and Agricultural University, 40 Thorvaldsensvej, DK 1871 Frederiksberg C, Copenhagen, Denmark
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178
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Schubert WD, Klukas O, Saenger W, Witt HT, Fromme P, Krauss N. A common ancestor for oxygenic and anoxygenic photosynthetic systems: a comparison based on the structural model of photosystem I. J Mol Biol 1998; 280:297-314. [PMID: 9654453 DOI: 10.1006/jmbi.1998.1824] [Citation(s) in RCA: 195] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
The 4 A structural model of photosystem I (PSI) has elucidated essential features of this protein complex. Inter alia, it demonstrates that the core proteins of PSI, PsaA and PsaB each consist of an N-terminal antenna-binding domain, and a C-terminal reaction center (RC)-domain. A comparison of the RC-domain of PSI and the photosynthetic RC of purple bacteria (PbRC), reveals significantly analogous structures. This provides the structural support for the hypothesis that the two RC-types (I and II) share a common evolutionary origin. Apart from a similar set of constituent cofactors of the electron transfer system, the analogous features include a comparable cofactor arrangement and a corresponding secondary structure motif of the RC-cores. Despite these analogies, significant differences are evident, particularly as regards the distances between and the orientation of individual cofactors, and the length and orientation of alpha-helices. Inferred roles of conserved amino acids are discussed for PSI, photosystem II (PSII), photosystem C (PSC, green sulfur bacteria) and photosystem H (PSH, heliobacteria). Significant sequence homology between the N-terminal, antenna-binding domains of the core proteins of type-I RCs, PsaA, PsaB, PscA and PshA (of PSI, PSC and PSH respectively) with the antenna-binding subunits CP43 and CP47 of PSII indicate that PSII has a modular structure comparable to that of PSI.
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Affiliation(s)
- W D Schubert
- Institut für Kristallographie, Freie Universität Berlin, Takustr. 6, Berlin, D-14195, Germany
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179
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Walz T, Grigorieff N. Electron Crystallography of Two-Dimensional Crystals of Membrane Proteins. J Struct Biol 1998; 121:142-61. [PMID: 9618341 DOI: 10.1006/jsbi.1998.3945] [Citation(s) in RCA: 68] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Electron microscopy has become a powerful technique, along with X-ray crystallography and nuclear magnetic resonance spectroscopy, to study the three-dimensional structure of biological molecules. It has evolved into a number of methods dealing with a wide range of biological samples, with electron crystallography of two-dimensional crystals being so far the only method allowing data collection at near-atomic resolution. In this paper, we review the methodology of electron crystallography and its application to membrane proteins, starting with the pioneering work on bacteriorhodopsin, which led to the first visualization of the secondary structure of a membrane protein in 1975. Since then, improvements in instrumentation, sample preparation, and data analysis have led to atomic models for bacteriorhodopsin and light-harvesting complex II from higher plants. The structures of many more membrane proteins have been studied by electron crystallography and in this review examples are included where a resolution of better than 10 Å has been achieved. Indeed, in some of the given examples an atomic model can be expected in the near future. Finally, a brief outlook is given on current and future developments of electron crystallographic methods. Copyright 1998 Academic Press.
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Affiliation(s)
- T Walz
- Department of Molecular Biology and Biotechnology, University of Sheffield, Firth Court, Western Bank, Sheffield, S10 2TN, United Kingdom
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180
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Abstract
Photosystem two (PSII) is unique among hte various types of photosynthetic systems in that it produces a very high redox potential so as to oxidise water. As a consequence it is unable to protect itself completely against singlet oxygen production generated by chlorophyll triplets. Mass spectrometry has shown that this leads to successive light induced oxidations of the D1, and to a lesser extent, the D2 proteins which constitute the PSII reaction centre. It seems likely that it is these detrimental side reactions that underlie the requirement to degrade and replace the D1 protein at a relatively high rate. Recent structural studies of various forms of isolated PSII using electron micrographical techniques have revealed the relative positioning of the major proteins and emphasise that D1/CP43 and D2/CP47 are related through a pseudo-twofold symmetry axis which is consistent with our current understanding of the disassembly/reassembly processes involved in D1 protein turnover and with the proposed structural relationship between PSII and photosystem one.
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Affiliation(s)
- J Barber
- Wolfson Laboratories, Biochemistry Department, Imperial College of Science, Technology and Medicine, London, UK.
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181
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Fromme P, Witt HT. Improved isolation and crystallization of photosystem I for structural analysis. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 1998. [DOI: 10.1016/s0005-2728(98)00059-0] [Citation(s) in RCA: 109] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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182
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Polm M, Brettel K. Secondary pair charge recombination in photosystem I under strongly reducing conditions: temperature dependence and suggested mechanism. Biophys J 1998; 74:3173-81. [PMID: 9635770 PMCID: PMC1299657 DOI: 10.1016/s0006-3495(98)78023-3] [Citation(s) in RCA: 23] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023] Open
Abstract
Photoinduced electron transfer in photosystem I (PS I) proceeds from the excited primary electron donor P700 (a chlorophyll a dimer) via the primary acceptor A0 (chlorophyll a) and the secondary acceptor A1 (phylloquinone) to three [4Fe-4S] clusters, Fx, FA, and FB. Prereduction of the iron-sulfur clusters blocks electron transfer beyond A1. It has been shown previously that, under such conditions, the secondary pair P700+A1- decays by charge recombination with t1/2 approximately 250 ns at room temperature, forming the P700 triplet state (3P700) with a yield exceeding 85%. This reaction is unusual, as the secondary pair in other photosynthetic reaction centers recombines much slower and forms directly the singlet ground state rather than the triplet state of the primary donor. Here we studied the temperature dependence of secondary pair recombination in PS I from the cyanobacterium Synechococcus sp. PCC6803, which had been illuminated in the presence of dithionite at pH 10 to reduce all three iron-sulfur clusters. The reaction P700+A1- --> 3P700 was monitored by flash absorption spectroscopy. With decreasing temperature, the recombination slowed down and the yield of 3P700 decreased. In the range between 303 K and 240 K, the recombination rates could be described by the Arrhenius law with an activation energy of approximately 170 meV. Below 240 K, the temperature dependence became much weaker, and recombination to the singlet ground state became the dominating process. To explain the fast activated recombination to the P700 triplet state, we suggest a mechanism involving efficient singlet to triplet spin evolution in the secondary pair, thermally activated repopulation of the more closely spaced primary pair P700+A0- in a triplet spin configuration, and subsequent fast recombination (intrinsic rate on the order of 10(9) s(-1)) forming 3P700.
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Affiliation(s)
- M Polm
- Section de Bioénergétique and CNRS-URA 2096, Département de Biologie Cellulaire et Moléculaire, CEA Saclay, Gif-sur-Yvette, France
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183
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Hu X, Damjanović A, Ritz T, Schulten K. Architecture and mechanism of the light-harvesting apparatus of purple bacteria. Proc Natl Acad Sci U S A 1998; 95:5935-41. [PMID: 9600895 PMCID: PMC34498 DOI: 10.1073/pnas.95.11.5935] [Citation(s) in RCA: 268] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023] Open
Abstract
Photosynthetic organisms fuel their metabolism with light energy and have developed for this purpose an efficient apparatus for harvesting sunlight. The atomic structure of the apparatus, as it evolved in purple bacteria, has been constructed through a combination of x-ray crystallography, electron microscopy, and modeling. The detailed structure and overall architecture reveals a hierarchical aggregate of pigments that utilizes, as shown through femtosecond spectroscopy and quantum physics, elegant and efficient mechanisms for primary light absorption and transfer of electronic excitation toward the photosynthetic reaction center.
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Affiliation(s)
- X Hu
- Beckman Institute and Department of Physics, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA
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184
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Pålsson LO, Flemming C, Gobets B, van Grondelle R, Dekker JP, Schlodder E. Energy transfer and charge separation in photosystem I: P700 oxidation upon selective excitation of the long-wavelength antenna chlorophylls of Synechococcus elongatus. Biophys J 1998; 74:2611-22. [PMID: 9591685 PMCID: PMC1299601 DOI: 10.1016/s0006-3495(98)77967-6] [Citation(s) in RCA: 128] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023] Open
Abstract
Photosystem I of the cyanobacterium Synechococcus elongatus contains two spectral pools of chlorophylls called C-708 and C-719 that absorb at longer wavelengths than the primary electron donor P700. We investigated the relative quantum yields of photochemical charge separation and fluorescence as a function of excitation wavelength and temperature in trimeric and monomeric photosystem I complexes of this cyanobacterium. The monomeric complexes are characterized by a reduced content of the C-719 spectral form. At room temperature, an analysis of the wavelength dependence of P700 oxidation indicated that all absorbed light, even of wavelengths of up to 750 nm, has the same probability of resulting in a stable P700 photooxidation. Upon cooling from 295 K to 5 K, the nonselectively excited steady-state emission increased by 11- and 16-fold in the trimeric and monomeric complexes, respectively, whereas the quantum yield of P700 oxidation decreased 2.2- and 1.7-fold. Fluorescence excitation spectra at 5 K indicate that the fluorescence quantum yield further increases upon scanning of the excitation wavelength from 690 nm to 710 nm, whereas the quantum yield of P700 oxidation decreases significantly upon excitation at wavelengths longer than 700 nm. Based on these findings, we conclude that at 5 K the excited state is not equilibrated over the antenna before charge separation occurs, and that approximately 50% of the excitations reach P700 before they become irreversibly trapped on one of the long-wavelength antenna pigments. Possible spatial organizations of the long-wavelength antenna pigments in the three-dimensional structure of photosystem I are discussed.
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Affiliation(s)
- L O Pålsson
- Department of Physics and Astronomy, Institute of Molecular Biological Sciences, Vrije Universiteit, Amsterdam, The Netherlands
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185
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Monshouwer R, Baltuška A, van Mourik F, van Grondelle R. Time-Resolved Absorption Difference Spectroscopy of the LH-1 Antenna of Rhodopseudomonas viridis. J Phys Chem A 1998. [DOI: 10.1021/jp980412i] [Citation(s) in RCA: 57] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- René Monshouwer
- Department of Physics and Astronomy, Free University of Amsterdam, de Boelelaan 1081, 1081 HV Amsterdam, The Netherlands
| | - Andrius Baltuška
- Department of Physics and Astronomy, Free University of Amsterdam, de Boelelaan 1081, 1081 HV Amsterdam, The Netherlands
| | - Frank van Mourik
- Department of Physics and Astronomy, Free University of Amsterdam, de Boelelaan 1081, 1081 HV Amsterdam, The Netherlands
| | - Rienk van Grondelle
- Department of Physics and Astronomy, Free University of Amsterdam, de Boelelaan 1081, 1081 HV Amsterdam, The Netherlands
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186
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Epple R, Carell T. Charakterisierung des Energietransfers in DNA-Photolyasen vom Typ II mit Flavin und Desazaflavin enthaltenden Modellverbindungen. Angew Chem Int Ed Engl 1998. [DOI: 10.1002/(sici)1521-3757(19980403)110:7<986::aid-ange986>3.0.co;2-d] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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187
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Vassiliev IR, Jung YS, Yang F, Golbeck JH. PsaC subunit of photosystem I is oriented with iron-sulfur cluster F(B) as the immediate electron donor to ferredoxin and flavodoxin. Biophys J 1998; 74:2029-35. [PMID: 9545061 PMCID: PMC1299543 DOI: 10.1016/s0006-3495(98)77909-3] [Citation(s) in RCA: 52] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023] Open
Abstract
The PsaC subunit of photosystem I (PS I) binds two [4Fe-4S] clusters, F(A) and F(B), functioning as electron carriers between F(X) and soluble ferredoxin. To resolve the issue whether F(A) or F(B) is proximal to F(X), we used single-turnover flashes to promote step-by-step electron transfer between electron carriers in control (both F(A) and F(B) present) and HgCl2-treated (F(B)-less) PS I complexes from Synechococcus sp. PCC 6301 and analyzed the kinetics of P700+ reduction by monitoring the absorbance changes at 832 nm in the presence of a fast electron donor (phenazine methosulfate (PMS)). In control PS I complexes exogenously added ferredoxin, or flavodoxin could be photoreduced on each flash, thus allowing P700+ to be reduced from PMS. In F(B)-less complexes, both in the presence and in the absence of ferredoxin or flavodoxin, P700+ was reduced from PMS only on the first flash and was reduced from F(X)- on the following flashes, indicating lack of electron transfer to ferredoxin or flavodoxin. In the F(B)-less complexes, a normal level of P700 photooxidation was detected accompanied by a high yield of charge recombination between P700+ and F(A)- in the presence of a slow donor, 2,6-dichlorophenol-indophenol. This recombination remained the only pathway of F(A)- reoxidation in the presence of added ferredoxin, consistent with the lack of forward electron transfer. F(A)- could be reoxidized by methyl viologen in F(B)-less PS I complexes, although at a concentration two orders of magnitude higher than is required in wild-type PS I complexes, thus implying the presence of a diffusion barrier. The inhibition of electron transfer to ferredoxin and flavodoxin was completely reversed after reconstituting the F(B) cluster. Using rate versus distance estimates for electron transfer rates from F(X) to ferredoxin for two possible orientations of PsaC, we conclude that the kinetic data are best compatible with PsaC being oriented with F(A) as the cluster proximal to F(X) and F(B) as the distal cluster that donates electrons to ferredoxin.
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Affiliation(s)
- I R Vassiliev
- Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park 16802, USA
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188
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Brettel K, Leibl W, Liebl U. Electron transfer in the heliobacterial reaction center: evidence against a quinone-type electron acceptor functioning analogous to A1 in photosystem I. BIOCHIMICA ET BIOPHYSICA ACTA 1998; 1363:175-81. [PMID: 9518598 DOI: 10.1016/s0005-2728(98)00010-3] [Citation(s) in RCA: 43] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
Membrane fragments from Heliobacillus mobilis were characterized using time resolved optical spectroscopy and photovoltage measurements in order to detect a possible participation of menaquinone (MQ), functioning analogous to the phylloquinone A1 in photosystem I, as intermediate in electron transfer from the primary acceptor A0 to the iron-sulfur cluster FX in the photosynthetic reaction center. The spectroscopic data obtained exclude that electron transfer from a semiquinone anion MQ- to FX occurred in the time window from 2 ns to 4 micros, where it would be expected in analogy to photosystem I. In the case of a prereduction of FX, only the primary pair P798+A0- was formed. The photovoltage data yielded a single kinetic phase with a time constant of 700 ps for the transmembrane electron transfer beyond A0; the relative amplitude of this phase suggests that it reflects electron transfer from A0- to FX.
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Affiliation(s)
- K Brettel
- Section de Bioénergétique, DBCM, CEA and CNRS URA 2096, Centre d'Etudes de Saclay, 91191 Gif-sur-Yvette Cedex, France.
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189
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Fischer N, Hippler M, Sétif P, Jacquot JP, Rochaix JD. The PsaC subunit of photosystem I provides an essential lysine residue for fast electron transfer to ferredoxin. EMBO J 1998; 17:849-58. [PMID: 9463363 PMCID: PMC1170434 DOI: 10.1093/emboj/17.4.849] [Citation(s) in RCA: 77] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023] Open
Abstract
PsaC is the stromal subunit of photosystem I (PSI) which binds the two terminal electron acceptors FA and FB. This subunit resembles 2[4Fe-4S] bacterial ferredoxins but contains two additional sequences: an internal loop and a C-terminal extension. To gain new insights into the function of the internal loop, we used an in vivo degenerate oligonucleotide-directed mutagenesis approach for analysing this region in the green alga Chlamydomonas reinhardtii. Analysis of several psaC mutants affected in PSI function or assembly revealed that K35 is a main interaction site between PsaC and ferredoxin (Fd) and that it plays a key role in the electrostatic interaction between Fd and PSI. This is based upon the observation that the mutations K35T, K35D and K35E drastically affect electron transfer from PSI to Fd, as measured by flash-absorption spectroscopy, whereas the K35R change has no effect on Fd reduction. Chemical cross-linking experiments show that Fd interacts not only with PsaD and PsaE, but also with the PsaC subunit of PSI. Replacement of K35 by T, D, E or R abolishes Fd cross-linking to PsaC, and cross-linking to PsaD and PsaE is reduced in the K35T, K35D and K35E mutants. In contrast, replacement of any other lysine of PsaC does not alter the cross-linking pattern, thus indicating that K35 is an interaction site between PsaC and its redox partner Fd.
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Affiliation(s)
- N Fischer
- Department of Molecular Biology, University of Geneva, Geneva, Switzerland
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190
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Beissinger M, Sticht H, Sutter M, Ejchart A, Haehnel W, Rösch P. Solution structure of cytochrome c6 from the thermophilic cyanobacterium Synechococcus elongatus. EMBO J 1998; 17:27-36. [PMID: 9427738 PMCID: PMC1170355 DOI: 10.1093/emboj/17.1.27] [Citation(s) in RCA: 41] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023] Open
Abstract
Cytochrome c6 is a small, soluble electron carrier between the two membrane-bound complexes cytochrome b6f and photosystem I (PSI) in oxygenic photosynthesis. We determined the solution structure of cytochrome c6 from the thermophilic cyanobacterium Synechococcus elongatus by NMR spectroscopy and molecular dynamics calculations based on 1586 interresidual distance and 28 dihedral angle restraints. The overall fold exhibits four alpha-helices and a small antiparallel beta-sheet in the vicinity of Met58, one of the axial heme ligands. The flat hydrophobic area in this cytochrome c6 is conserved in other c6 cytochromes and even in plastocyanin of higher plants. This docking region includes the site of electron transfer to PSI and possibly to the cytochrome b6f complex. The binding of cytochrome c6 to PSI in green algae involves interaction of a negative patch with a positive domain of PSI. This positive domain has not been inserted at the evolutionary level of cyanobacteria, but the negatively charged surface region is already present in S. elongatus cytochrome c6 and may thus have been optimized during evolution to improve the interaction with the positively charged cytochrome f. As the structure of PSI is known in S.elongatus, the reported cytochrome c6 structure can provide a basis for mutagenesis studies to delineate the mechanism of electron transfer between both.
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Affiliation(s)
- M Beissinger
- Lehrstuhl für Biopolymere, Universität Bayreuth, D-95440 Bayreuth
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191
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Redding K, MacMillan F, Leibl W, Brettel K, Hanley J, Rutherford AW, Breton J, Rochaix JD. A systematic survey of conserved histidines in the core subunits of Photosystem I by site-directed mutagenesis reveals the likely axial ligands of P700. EMBO J 1998; 17:50-60. [PMID: 9427740 PMCID: PMC1170357 DOI: 10.1093/emboj/17.1.50] [Citation(s) in RCA: 91] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023] Open
Abstract
The Photosystem I complex catalyses the transfer of an electron from lumenal plastocyanin to stromal ferredoxin, using the energy of an absorbed photon. The initial photochemical event is the transfer of an electron from the excited state of P700, a pair of chlorophylls, to a monomer chlorophyll serving as the primary electron acceptor. We have performed a systematic survey of conserved histidines in the last six transmembrane segments of the related polytopic membrane proteins PsaA and PsaB in the green alga Chlamydomonas reinhardtii. These histidines, which are present in analogous positions in both proteins, were changed to glutamine or leucine by site-directed mutagenesis. Double mutants in which both histidines had been changed to glutamine were screened for changes in the characteristics of P700 using electron paramagnetic resonance, Fourier transform infrared and visible spectroscopy. Only mutations in the histidines of helix 10 (PsaA-His676 and PsaB-His656) resulted in changes in spectroscopic properties of P700, leading us to conclude that these histidines are most likely the axial ligands to the P700 chlorophylls.
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Affiliation(s)
- K Redding
- Department of Molecular Biology, University of Geneva, 30, quai Ernest-Ansermet, CH-1211 Geneva 4, Switzerland
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192
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Timmel C, Fursman C, Hoff A, Hore P. Spin-correlated radical pairs: microwave pulse effects on lifetimes, electron spin echo envelope modulations, and optimum conditions for detection by electron spin echo spectroscopy. Chem Phys 1998. [DOI: 10.1016/s0301-0104(97)00283-8] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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193
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Pulsed EPR detection of light-generated nuclear coherences in photosynthetic reaction centers. Chem Phys Lett 1998. [DOI: 10.1016/s0009-2614(97)01331-6] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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194
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Preusch PC, Norvell JC, Cassatt JC, Cassman M. Progress away from 'no crystals, no grant'. NATURE STRUCTURAL BIOLOGY 1998; 5:12-4. [PMID: 9437421 DOI: 10.1038/nsb0198-12] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
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195
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[2] Isolation and genetic characterization of pseudorevertants from site-directed PSI mutants in Synechocystis 6803. Methods Enzymol 1998. [DOI: 10.1016/s0076-6879(98)97004-5] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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196
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Prangé T, Schiltz M, Pernot L, Colloc'h N, Longhi S, Bourguet W, Fourme R. Exploring hydrophobic sites in proteins with xenon or krypton. Proteins 1998. [DOI: 10.1002/(sici)1097-0134(19980101)30:1<61::aid-prot6>3.0.co;2-n] [Citation(s) in RCA: 144] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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197
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The P700 triplet state in an intact environment detected by ODMR. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 1997. [DOI: 10.1016/s0005-2728(97)00068-6] [Citation(s) in RCA: 22] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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198
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Tsiotis G, Hager-Braun C, Wolpensinger B, Engel A, Hauska G. Structural analysis of the photosynthetic reaction center from the green sulfur bacterium Chlorobium tepidum. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 1997. [DOI: 10.1016/s0005-2728(97)00073-x] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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199
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Bratt PJ, Rohrer M, Krzystek J, Evans MCW, Brunel LC, Angerhofer A. Submillimeter High-Field EPR Studies of the Primary Donor in Plant Photosystem I P700•+. J Phys Chem B 1997. [DOI: 10.1021/jp9725238] [Citation(s) in RCA: 50] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Peter J. Bratt
- The Department of Chemistry, The University of Florida, P.O. Box 117200, Gainesville, Florida 32611-7200, Center for Interdisciplinary Magnetic Resonance, National High Magnetic Field Laboratory, Florida State University, Tallahassee, Florida 32310, and The Department of Biology, Darwin Building, University College London, Gower Street, London WC1H 9EW, United Kingdom
| | - Martin Rohrer
- The Department of Chemistry, The University of Florida, P.O. Box 117200, Gainesville, Florida 32611-7200, Center for Interdisciplinary Magnetic Resonance, National High Magnetic Field Laboratory, Florida State University, Tallahassee, Florida 32310, and The Department of Biology, Darwin Building, University College London, Gower Street, London WC1H 9EW, United Kingdom
| | - J. Krzystek
- The Department of Chemistry, The University of Florida, P.O. Box 117200, Gainesville, Florida 32611-7200, Center for Interdisciplinary Magnetic Resonance, National High Magnetic Field Laboratory, Florida State University, Tallahassee, Florida 32310, and The Department of Biology, Darwin Building, University College London, Gower Street, London WC1H 9EW, United Kingdom
| | - Michael C. W. Evans
- The Department of Chemistry, The University of Florida, P.O. Box 117200, Gainesville, Florida 32611-7200, Center for Interdisciplinary Magnetic Resonance, National High Magnetic Field Laboratory, Florida State University, Tallahassee, Florida 32310, and The Department of Biology, Darwin Building, University College London, Gower Street, London WC1H 9EW, United Kingdom
| | - Louis-Claude Brunel
- The Department of Chemistry, The University of Florida, P.O. Box 117200, Gainesville, Florida 32611-7200, Center for Interdisciplinary Magnetic Resonance, National High Magnetic Field Laboratory, Florida State University, Tallahassee, Florida 32310, and The Department of Biology, Darwin Building, University College London, Gower Street, London WC1H 9EW, United Kingdom
| | - Alexander Angerhofer
- The Department of Chemistry, The University of Florida, P.O. Box 117200, Gainesville, Florida 32611-7200, Center for Interdisciplinary Magnetic Resonance, National High Magnetic Field Laboratory, Florida State University, Tallahassee, Florida 32310, and The Department of Biology, Darwin Building, University College London, Gower Street, London WC1H 9EW, United Kingdom
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200
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Bentrop D, Bertini I, Luchinat C, Nitschke W, Mühlenhoff U. Characterization of the unbound 2[Fe4S4]-ferredoxin-like photosystem I subunit PsaC from the Cyanobacterium synechococcus elongatus. Biochemistry 1997; 36:13629-37. [PMID: 9354632 DOI: 10.1021/bi9714058] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Abstract
Recombinant PsaC was reconstituted in vitro and investigated by UV/vis, EPR, and 1H NMR spectroscopy. Its UV/vis and EPR spectroscopic properties correspond to those of the wild-type protein. Fast repetition 1D and 2D 1H NMR spectra allowed the sequence-specific assignment of the hyperfine-shifted proton resonances of the cluster-ligating resonances, taking advantage also of chemical shift analogies with other 4 and 8 Fe ferredoxins and a structural model for PsaC. The Calpha-Cbeta-S-Fe dihedral angles of the cluster ligands could be estimated from the chemical shifts and relaxation properties of their betaCH2 protons. All NMR-derived structural information on PsaC confirms its similarity to smaller 8Fe ferredoxins serving as electron transfer proteins in solution. Partial reduction of PsaC leads to an intermediate species with strongly exchange broadened 1H NMR resonances. The intermolecular electron exchange rate is estimated to be in the 10(2)-10(4) s-1 range, the intramolecular electron exchange rate between the two [Fe4S4] clusters to be higher than 10(4) s-1. The consequences of these findings for the electron transfer in photosystem I are discussed.
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Affiliation(s)
- D Bentrop
- Department of Chemistry, University of Florence, Italy
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