151
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Spencer JS, Neufeld VA, Vigor WA, Franklin RST, Thom AJW. Large scale parallelization in stochastic coupled cluster. J Chem Phys 2018; 149:204103. [DOI: 10.1063/1.5047420] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- J. S. Spencer
- Department of Materials, Imperial College London, Exhibition Road, London SW7 2AZ, United Kingdom
- Department of Physics, Imperial College London, Exhibition Road, London SW7 2AZ, United Kingdom
| | - V. A. Neufeld
- University Chemical Laboratory, Lensfield Road, Cambridge CB2 1EW, United Kingdom
| | - W. A. Vigor
- Department of Chemistry, Imperial College London, Exhibition Road, London SW7 2AZ, United Kingdom
| | - R. S. T. Franklin
- University Chemical Laboratory, Lensfield Road, Cambridge CB2 1EW, United Kingdom
| | - A. J. W. Thom
- University Chemical Laboratory, Lensfield Road, Cambridge CB2 1EW, United Kingdom
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152
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Kozłowska J, Schwilk M, Roztoczyńska A, Bartkowiak W. Assessment of DFT for endohedral complexes' dipole moment: PNO-LCCSD-F12 as a reference method. Phys Chem Chem Phys 2018; 20:29374-29388. [PMID: 30451255 DOI: 10.1039/c8cp05928d] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We present a systematic evaluation of the performance of a wide range of exchange-correlation functionals and related dispersion correction schemes for the computation of dipole moments of endohedral complexes, formed through the encapsulation of an AB molecule (AB = LiF, HCl) inside carbon nanotubes (CNTs) of different diameter. The consistency and accuracy of (i) generalized gradient approximation, (ii) meta GGA, (iii) global hybrid, and (iv) range-separated hybrid density functionals are assessed. In total, 37 density functionals are tested. The results obtained using the highly accurate pair natural orbitals based explicitly correlated local coupled cluster singles doubles (PNO-LCCSD-F12) method of Werner and co-workers [Schwilk et al., J. Chem. Theory Comput., 2017, 13, 3650; Ma et al., J. Chem. Theory Comput., 2017, 13, 4871] with the aug-cc-pVTZ basis set serve as a reference. The static electric dipole moment is computed via the finite field response or, when possible, as the expectation value of the dipole operator. Among others, it is shown that functionals belonging to the class of range-separated hybrids, provide results closest to the coupled cluster reference data. In particular, the ωB97X as well as the M11 functional may be considered as a promising choice for computing electric properties of noncovalent endohedral complexes. On the other hand, the worst performance was found for the functionals which do not include the Hartree-Fock exchange. The analysis of both the coupled cluster and the DFT results indicates a strong coupling of dispersion and polarization that may also explain why lower level DFT methods, as well as Hartree-Fock and MP2, cannot yield dipole moments beyond a qualitative agreement with the higher order reference data. Interestingly, the much smaller and less systematically constructed basis sets of Pople of moderate size provide results of accuracy at least comparable with the extended Dunning's aug-cc-pVTZ basis set.
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Affiliation(s)
- Justyna Kozłowska
- Department of Physical and Quantum Chemistry, Wrocław University of Science and Technology, Wybrzeże Wyspiańskiego 27, PL-50370 Wrocław, Poland.
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153
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154
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155
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156
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Thirumoorthy K, Karton A, Thimmakondu VS. From High-Energy C7H2 Isomers with A Planar Tetracoordinate Carbon Atom to An Experimentally Known Carbene. J Phys Chem A 2018; 122:9054-9064. [DOI: 10.1021/acs.jpca.8b08809] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Krishnan Thirumoorthy
- Department of Chemistry, School of Advanced Sciences, Vellore Institute of Technology, Vellore 632 014, Tamil Nadu, India
| | - Amir Karton
- School of Molecular Sciences, The University of Western Australia, Perth, Western Australia 6009, Australia
| | - Venkatesan S. Thimmakondu
- Department of Chemistry, Birla Institute of Technology and Science, Pilani, K K Birla Goa Campus, Goa 403 726, India
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157
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Ni Z, Li W, Li S. Fully optimized implementation of the cluster-in-molecule local correlation approach for electron correlation calculations of large systems. J Comput Chem 2018; 40:1130-1140. [DOI: 10.1002/jcc.25730] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2018] [Revised: 08/27/2018] [Accepted: 09/27/2018] [Indexed: 01/30/2023]
Affiliation(s)
- Zhigang Ni
- School of Chemistry and Chemical Engineering, Key Laboratory of Mesoscopic Chemistry of MOE; Institute of Theoretical and Computational Chemistry, Nanjing University; Nanjing 210023 People's Republic of China
| | - Wei Li
- School of Chemistry and Chemical Engineering, Key Laboratory of Mesoscopic Chemistry of MOE; Institute of Theoretical and Computational Chemistry, Nanjing University; Nanjing 210023 People's Republic of China
| | - Shuhua Li
- School of Chemistry and Chemical Engineering, Key Laboratory of Mesoscopic Chemistry of MOE; Institute of Theoretical and Computational Chemistry, Nanjing University; Nanjing 210023 People's Republic of China
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158
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Medvedev AA, Meshkov VV, Stolyarov AV, Heaven MC. Ab initio interatomic potentials and transport properties of alkali metal (M = Rb and Cs)-rare gas (Rg = He, Ne, Ar, Kr, and Xe) media. Phys Chem Chem Phys 2018; 20:25974-25982. [PMID: 30298162 DOI: 10.1039/c8cp04397c] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
We performed a first principle systematic calculation on the adiabatic potential energy curves (PECs) of alkali metal (M = Rb and Cs) - rare gas (Rg = He, Ne, Ar, Kr, and Xe) van der Waals molecules over a wide range of interatomic distance R. All electron basis sets of triple and quadruple zeta valence quality were used for the He, Ne, Ar and Kr atoms. Scalar relativistic effects were taken into account for the heavy Rb, Cs and Xe atoms by means of Dirac-Fock effective core potentials. The correlated ground state energies have been obtained within the framework of the spin unrestricted open-shell coupled cluster method, with perturbative treatment of triple excitations. The electronic energies were corrected for the basis set superposition error (BSSE) using the counterpoise method. Energies were extrapolated to the complete basis set (CBS) limit using a two-point scheme. The energy convergence towards the CBS limit was monitored by the saturation of the dummy atom basis set that included bond functions centered at the midpoint of the interatomic distance. The ab initio point-wise PEC was followed to small R to the point where the energy was 0.5 Hartree above the dissociation limit. A Morse long-range (MLR, UM Rg(R)) potential possessing the correct asymptotic behavior at R → ∞ was fitted to the single point energies. The resulting set of fully analytical MLR potentials was then used to evaluate classical collision integrals over a wide range of collision energies. By this means, diffusion coefficients (DM Rg(T)) were predicted as functions of the translation temperature T ≤ 3000 K. The reliability of the present ab initio UM Rg(R) and DM Rg(T) functions was accessed through a comparison with previous theoretical and experimental results.
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Affiliation(s)
- Alexander A Medvedev
- Department of Chemistry, Lomonosov Moscow State University, Leninskie gory 1/3, 119991 Moscow, Russia.
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159
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Abbott AS, Glick ZL, Schaefer HF. Reinterpretation of the electronic absorption spectrum of the methylene amidogen radical (H 2CN). J Chem Phys 2018; 149:094302. [DOI: 10.1063/1.5042763] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Affiliation(s)
- Adam S. Abbott
- Center for Computational Quantum Chemistry, The University of Georgia, Athens, Georgia 30602, USA
| | - Zach L. Glick
- Center for Computational Quantum Chemistry, The University of Georgia, Athens, Georgia 30602, USA
| | - Henry F. Schaefer
- Center for Computational Quantum Chemistry, The University of Georgia, Athens, Georgia 30602, USA
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160
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Affiliation(s)
- Thanh Lam Nguyen
- Quantum Theory Project, Department of Chemistry and Physics, University of Florida, Gainesville, Florida 32611, United States
| | - John F. Stanton
- Quantum Theory Project, Department of Chemistry and Physics, University of Florida, Gainesville, Florida 32611, United States
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161
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Adjieufack AI, Liégeois V, Ndassa Mboumbouo I, Ketcha Mbadcam J, Champagne B. Intramolecular [3 + 2] Cycloaddition Reactions of Unsaturated Nitrile Oxides. A Study from the Perspective of Bond Evolution Theory (BET). J Phys Chem A 2018; 122:7472-7481. [DOI: 10.1021/acs.jpca.8b06711] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Abel Idrice Adjieufack
- Physical and Theoretical Chemistry of Laboratory, University of Yaoundé 1, Yaoundé, Cameroon
- Laboratory of Theoretical Chemistry (LCT) and Namur Institute of Structured Matter (NISM), University of Namur, Rue de Bruxelles, 61, B-5000 Namur, Belgium
| | - Vincent Liégeois
- Laboratory of Theoretical Chemistry (LCT) and Namur Institute of Structured Matter (NISM), University of Namur, Rue de Bruxelles, 61, B-5000 Namur, Belgium
| | - Ibrahim Ndassa Mboumbouo
- Department of Chemistry, High Teacher Training College, University of Yaoundé 1, Yaoundé, Cameroon
| | - Joseph Ketcha Mbadcam
- Physical and Theoretical Chemistry of Laboratory, University of Yaoundé 1, Yaoundé, Cameroon
| | - Benoît Champagne
- Laboratory of Theoretical Chemistry (LCT) and Namur Institute of Structured Matter (NISM), University of Namur, Rue de Bruxelles, 61, B-5000 Namur, Belgium
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162
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Eriksen JJ, Gauss J. Many-Body Expanded Full Configuration Interaction. I. Weakly Correlated Regime. J Chem Theory Comput 2018; 14:5180-5191. [DOI: 10.1021/acs.jctc.8b00680] [Citation(s) in RCA: 40] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Janus J. Eriksen
- Institut für Physikalische Chemie, Johannes Gutenberg-Universität Mainz, Duesbergweg 10-14, 55128 Mainz, Germany
| | - Jürgen Gauss
- Institut für Physikalische Chemie, Johannes Gutenberg-Universität Mainz, Duesbergweg 10-14, 55128 Mainz, Germany
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163
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Radoń M, Drabik G. Spin States and Other Ligand-Field States of Aqua Complexes Revisited with Multireference ab Initio Calculations Including Solvation Effects. J Chem Theory Comput 2018; 14:4010-4027. [PMID: 29944837 DOI: 10.1021/acs.jctc.8b00200] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
High-level multireference (CASPT2, NEVPT2) calculations are reported for transition metal aqua complexes with electronic configurations from (3d)1 to (3d)8. We focus on the experimentally evidenced excitation energies to their various ligand-field states, including different spin states. By employing models accounting for both explicit and implicit solvation, we find that solvation effect may contribute up to 0.5 eV to the excitation energies depending on the charge of ion and character of the electronic transition. We further demonstrate that with an adequate choice of the active space and the energetics extrapolated to the complete basis set limit, the presently computed excitation energies are in a good agreement with the experimental data. This allows us to conclusively resolve significant discrepancies reported in earlier theory works [e.g., J. Phys. Chem. C 2014 , 118 , 29196 - 29208 ]. For the benchmark set of 19 spin-forbidden and 24 spin-allowed transitions (for which experimental data are unambiguous), we find the mean absolute error of 0.15 or 0.13 eV and the maximum error of 0.56 or 0.42 eV for CASPT2 or NEVPT2 calculations, respectively. For the particularly challenging sextet-quartet gap for [Fe(H2O)6]3+, we support our interpretation by additional calculations with multireference configuration interaction (MRCI) and coupled cluster theory up to the CCSDT(Q) level. By underlining a rather subtle interplay between the solvation and correlation effects, the findings of this Article are relevant not only for modeling and interpretation of optical spectra of transition metal complexes but also in further benchmarking of theoretical methods for the challenging problem of spin-state energetics.
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Affiliation(s)
- Mariusz Radoń
- Department of Inorganic Chemistry, Faculty of Chemistry , Jagiellonian University , Gronostajowa 2 , Krakow 30-387 , Poland
| | - Gabriela Drabik
- Department of Inorganic Chemistry, Faculty of Chemistry , Jagiellonian University , Gronostajowa 2 , Krakow 30-387 , Poland
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164
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CCSDT(Q)/CBS thermochemistry for the D5h → D10h isomerization in the C10 carbon cluster: Getting the right answer for the right reason. Chem Phys Lett 2018. [DOI: 10.1016/j.cplett.2018.05.062] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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165
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Hégely B, Nagy PR, Kállay M. Dual Basis Set Approach for Density Functional and Wave Function Embedding Schemes. J Chem Theory Comput 2018; 14:4600-4615. [DOI: 10.1021/acs.jctc.8b00350] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
Affiliation(s)
- Bence Hégely
- MTA-BME Lendület Quantum Chemistry Research Group, Department of Physical Chemistry and Materials Science, Budapest University of Technology and Economics, P.O. Box 91, H-1521 Budapest, Hungary
| | - Péter R. Nagy
- MTA-BME Lendület Quantum Chemistry Research Group, Department of Physical Chemistry and Materials Science, Budapest University of Technology and Economics, P.O. Box 91, H-1521 Budapest, Hungary
| | - Mihály Kállay
- MTA-BME Lendület Quantum Chemistry Research Group, Department of Physical Chemistry and Materials Science, Budapest University of Technology and Economics, P.O. Box 91, H-1521 Budapest, Hungary
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166
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Karton A. Post-CCSD(T) contributions to total atomization energies in multireference systems. J Chem Phys 2018; 149:034102. [DOI: 10.1063/1.5036795] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Amir Karton
- School of Molecular Sciences, The University of Western Australia, Perth, Western Australia 6009, Australia
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167
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Ma Q, Werner H. Explicitly correlated local coupled‐cluster methods using pair natural orbitals. WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL MOLECULAR SCIENCE 2018. [DOI: 10.1002/wcms.1371] [Citation(s) in RCA: 100] [Impact Index Per Article: 16.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Affiliation(s)
- Qianli Ma
- Institute for Theoretical ChemistryUniversity of StuttgartStuttgartGermany
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168
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Loos PF, Scemama A, Blondel A, Garniron Y, Caffarel M, Jacquemin D. A Mountaineering Strategy to Excited States: Highly Accurate Reference Energies and Benchmarks. J Chem Theory Comput 2018; 14:4360-4379. [DOI: 10.1021/acs.jctc.8b00406] [Citation(s) in RCA: 152] [Impact Index Per Article: 25.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Affiliation(s)
- Pierre-François Loos
- Laboratoire de Chimie et Physique Quantiques, Université de Toulouse, CNRS, UPS, 31013 Toulouse Cedex 6, France
| | - Anthony Scemama
- Laboratoire de Chimie et Physique Quantiques, Université de Toulouse, CNRS, UPS, 31013 Toulouse Cedex 6, France
| | - Aymeric Blondel
- Laboratoire CEISAM - UMR CNRS 6230, Université de Nantes, 2 Rue de la Houssinière, BP 92208, 44322 Nantes Cedex 3, France
| | - Yann Garniron
- Laboratoire de Chimie et Physique Quantiques, Université de Toulouse, CNRS, UPS, 31013 Toulouse Cedex 6, France
| | - Michel Caffarel
- Laboratoire de Chimie et Physique Quantiques, Université de Toulouse, CNRS, UPS, 31013 Toulouse Cedex 6, France
| | - Denis Jacquemin
- Laboratoire CEISAM - UMR CNRS 6230, Université de Nantes, 2 Rue de la Houssinière, BP 92208, 44322 Nantes Cedex 3, France
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169
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Nagy PR, Samu G, Kállay M. Optimization of the Linear-Scaling Local Natural Orbital CCSD(T) Method: Improved Algorithm and Benchmark Applications. J Chem Theory Comput 2018; 14:4193-4215. [DOI: 10.1021/acs.jctc.8b00442] [Citation(s) in RCA: 66] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Affiliation(s)
- Péter R. Nagy
- MTA-BME Lendület Quantum Chemistry Research Group, Department of Physical Chemistry and Materials Science, Budapest University of Technology and Economics, P.O. Box 91, H-1521 Budapest, Hungary
| | - Gyula Samu
- MTA-BME Lendület Quantum Chemistry Research Group, Department of Physical Chemistry and Materials Science, Budapest University of Technology and Economics, P.O. Box 91, H-1521 Budapest, Hungary
| | - Mihály Kállay
- MTA-BME Lendület Quantum Chemistry Research Group, Department of Physical Chemistry and Materials Science, Budapest University of Technology and Economics, P.O. Box 91, H-1521 Budapest, Hungary
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170
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Copan AV, Sokolov AY. Linear-Response Density Cumulant Theory for Excited Electronic States. J Chem Theory Comput 2018; 14:4097-4108. [DOI: 10.1021/acs.jctc.8b00326] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Andreas V. Copan
- Department of Chemistry and Biochemistry, The Ohio State University, Columbus, Ohio 43210, United States
| | - Alexander Yu. Sokolov
- Department of Chemistry and Biochemistry, The Ohio State University, Columbus, Ohio 43210, United States
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171
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Guo Y, Riplinger C, Becker U, Liakos DG, Minenkov Y, Cavallo L, Neese F. Communication: An improved linear scaling perturbative triples correction for the domain based local pair-natural orbital based singles and doubles coupled cluster method [DLPNO-CCSD(T)]. J Chem Phys 2018; 148:011101. [PMID: 29306283 DOI: 10.1063/1.5011798] [Citation(s) in RCA: 377] [Impact Index Per Article: 62.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
In this communication, an improved perturbative triples correction (T) algorithm for domain based local pair-natural orbital singles and doubles coupled cluster (DLPNO-CCSD) theory is reported. In our previous implementation, the semi-canonical approximation was used and linear scaling was achieved for both the DLPNO-CCSD and (T) parts of the calculation. In this work, we refer to this previous method as DLPNO-CCSD(T0) to emphasize the semi-canonical approximation. It is well-established that the DLPNO-CCSD method can predict very accurate absolute and relative energies with respect to the parent canonical CCSD method. However, the (T0) approximation may introduce significant errors in absolute energies as the triples correction grows up in magnitude. In the majority of cases, the relative energies from (T0) are as accurate as the canonical (T) results of themselves. Unfortunately, in rare cases and in particular for small gap systems, the (T0) approximation breaks down and relative energies show large deviations from the parent canonical CCSD(T) results. To address this problem, an iterative (T) algorithm based on the previous DLPNO-CCSD(T0) algorithm has been implemented [abbreviated here as DLPNO-CCSD(T)]. Using triples natural orbitals to represent the virtual spaces for triples amplitudes, storage bottlenecks are avoided. Various carefully designed approximations ease the computational burden such that overall, the increase in the DLPNO-(T) calculation time over DLPNO-(T0) only amounts to a factor of about two (depending on the basis set). Benchmark calculations for the GMTKN30 database show that compared to DLPNO-CCSD(T0), the errors in absolute energies are greatly reduced and relative energies are moderately improved. The particularly problematic case of cumulene chains of increasing lengths is also successfully addressed by DLPNO-CCSD(T).
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Affiliation(s)
- Yang Guo
- Max Planck Institut für Chemische Energiekonversion, Stiftstr. 34-36, D-45470 Mülheim an der Ruhr, Germany
| | - Christoph Riplinger
- Max Planck Institut für Chemische Energiekonversion, Stiftstr. 34-36, D-45470 Mülheim an der Ruhr, Germany
| | - Ute Becker
- Max Planck Institut für Chemische Energiekonversion, Stiftstr. 34-36, D-45470 Mülheim an der Ruhr, Germany
| | - Dimitrios G Liakos
- Max Planck Institut für Chemische Energiekonversion, Stiftstr. 34-36, D-45470 Mülheim an der Ruhr, Germany
| | - Yury Minenkov
- King Abdullah University of Science and Technology (KAUST), Physical Science and Engineering Division (PSE), KAUST Catalysis Center (KCC), 23955-6900 Thuwal, Saudi Arabia
| | - Luigi Cavallo
- King Abdullah University of Science and Technology (KAUST), Physical Science and Engineering Division (PSE), KAUST Catalysis Center (KCC), 23955-6900 Thuwal, Saudi Arabia
| | - Frank Neese
- Max Planck Institut für Chemische Energiekonversion, Stiftstr. 34-36, D-45470 Mülheim an der Ruhr, Germany
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172
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Nguyen TL, Stanton JF. High-level theoretical study of the reaction between hydroxyl and ammonia: Accurate rate constants from 200 to 2500 K. J Chem Phys 2018; 147:152704. [PMID: 29055339 DOI: 10.1063/1.4986151] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Hydrogen abstraction from NH3 by OH to produce H2O and NH2-an important reaction in combustion of NH3 fuel-was studied with a theoretical approach that combines high level quantum chemistry and advanced chemical kinetics methods. Thermal rate constants calculated from first principles agree well (within 5%-20%) with available experimental data over a temperature range that extends from 200 to 2500 K. Quantum mechanical tunneling effects were found to be important; they lead to a decided curvature and non-Arrhenius behavior for the rate constant.
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Affiliation(s)
- Thanh Lam Nguyen
- Department of Chemistry, The University of Texas at Austin, Austin, Texas 78712, USA
| | - John F Stanton
- Department of Chemistry, The University of Texas at Austin, Austin, Texas 78712, USA
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173
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Klawohn S, Kaupp M, Karton A. MVO-10: A Gas-Phase Oxide Benchmark for Localization/Delocalization in Mixed-Valence Systems. J Chem Theory Comput 2018; 14:3512-3523. [DOI: 10.1021/acs.jctc.8b00289] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Affiliation(s)
- Sascha Klawohn
- Theoretische Chemie/Quantenchemie, Institut für Chemie, Technische Universität Berlin, Sekr. C7, Straße des 17. Juni 135, D-10623 Berlin, Germany
| | - Martin Kaupp
- Theoretische Chemie/Quantenchemie, Institut für Chemie, Technische Universität Berlin, Sekr. C7, Straße des 17. Juni 135, D-10623 Berlin, Germany
| | - Amir Karton
- School of Molecular Sciences, The University of Western Australia, 35 Stirling Highway, Crawley, Perth, Australia
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174
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Weidman JD, Allen RT, Moore KB, Schaefer HF. High-level theoretical characterization of the vinoxy radical (•CH2CHO) + O2 reaction. J Chem Phys 2018; 148:184308. [DOI: 10.1063/1.5026295] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Jared D. Weidman
- Center for Computational Quantum Chemistry, University of Georgia, Athens, Georgia 30602, USA
| | - Ryan T. Allen
- Center for Computational Quantum Chemistry, University of Georgia, Athens, Georgia 30602, USA
| | - Kevin B. Moore
- Center for Computational Quantum Chemistry, University of Georgia, Athens, Georgia 30602, USA
| | - Henry F. Schaefer
- Center for Computational Quantum Chemistry, University of Georgia, Athens, Georgia 30602, USA
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175
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Wagner JP, McDonald DC, Duncan MA. An Argon–Oxygen Covalent Bond in the ArOH
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Molecular Ion. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201802093] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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176
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Guo Y, Becker U, Neese F. Comparison and combination of “direct” and fragment based local correlation methods: Cluster in molecules and domain based local pair natural orbital perturbation and coupled cluster theories. J Chem Phys 2018; 148:124117. [DOI: 10.1063/1.5021898] [Citation(s) in RCA: 35] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023] Open
Affiliation(s)
- Yang Guo
- Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1, D-45470 Mülheim an der Ruhr, Germany
| | - Ute Becker
- Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1, D-45470 Mülheim an der Ruhr, Germany
| | - Frank Neese
- Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1, D-45470 Mülheim an der Ruhr, Germany
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177
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Wagner JP, McDonald DC, Duncan MA. An Argon–Oxygen Covalent Bond in the ArOH
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Molecular Ion. Angew Chem Int Ed Engl 2018; 57:5081-5085. [DOI: 10.1002/anie.201802093] [Citation(s) in RCA: 32] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2018] [Indexed: 11/11/2022]
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178
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Bartlett MA, Liang T, Pu L, Schaefer HF, Allen WD. The multichannel n-propyl + O2 reaction surface: Definitive theory on a model hydrocarbon oxidation mechanism. J Chem Phys 2018. [DOI: 10.1063/1.5017305] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Affiliation(s)
- Marcus A. Bartlett
- Center for Computational Chemistry and Department of Chemistry, University of Georgia, Athens, Georgia 30602, USA
| | - Tao Liang
- Center for Computational Chemistry and Department of Chemistry, University of Georgia, Athens, Georgia 30602, USA
| | - Liang Pu
- College of Chemistry & Pharmacy, Northwest A&F University, Yangling, Shaanxi 712100, People’s Republic of China
| | - Henry F. Schaefer
- Center for Computational Chemistry and Department of Chemistry, University of Georgia, Athens, Georgia 30602, USA
| | - Wesley D. Allen
- Center for Computational Chemistry and Department of Chemistry, University of Georgia, Athens, Georgia 30602, USA
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179
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Mester D, Nagy PR, Kállay M. Reduced-cost second-order algebraic-diagrammatic construction method for excitation energies and transition moments. J Chem Phys 2018. [DOI: 10.1063/1.5021832] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022] Open
Affiliation(s)
- Dávid Mester
- MTA-BME Lendület Quantum Chemistry Research Group, Department of Physical Chemistry and Materials Science, Budapest University of Technology and Economics, P.O. Box 91, H-1521 Budapest, Hungary
| | - Péter R. Nagy
- MTA-BME Lendület Quantum Chemistry Research Group, Department of Physical Chemistry and Materials Science, Budapest University of Technology and Economics, P.O. Box 91, H-1521 Budapest, Hungary
| | - Mihály Kállay
- MTA-BME Lendület Quantum Chemistry Research Group, Department of Physical Chemistry and Materials Science, Budapest University of Technology and Economics, P.O. Box 91, H-1521 Budapest, Hungary
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180
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Abbott AS, Schaefer HF. The Structure and Cl–O Dissociation Energy of the ClOO Radical: Finally, the Right Answers for the Right Reason. J Phys Chem A 2018; 122:2604-2610. [DOI: 10.1021/acs.jpca.8b00394] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Adam S. Abbott
- Center for Computational Quantum Chemistry, The University of Georgia, Athens, Georgia 30602, United States
| | - Henry F. Schaefer
- Center for Computational Quantum Chemistry, The University of Georgia, Athens, Georgia 30602, United States
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181
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Fiedler B, Himmel D, Krossing I, Friedrich J. More Stable Template Localization for an Incremental Focal-Point Approach—Implementation and Application to the Intramolecular Decomposition of Tris-perfluoro- tert-butoxyalane. J Chem Theory Comput 2018; 14:557-571. [DOI: 10.1021/acs.jctc.7b00707] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Benjamin Fiedler
- Institut
für Chemie, Technische Universität Chemnitz, 09111 Chemnitz, Germany
| | - Daniel Himmel
- Institut
für Anorganische und Analytische Chemie, Albert-Ludwigs-Universität Freiburg, 79104 Freiburg, Germany
| | - Ingo Krossing
- Institut
für Anorganische und Analytische Chemie, Albert-Ludwigs-Universität Freiburg, 79104 Freiburg, Germany
| | - Joachim Friedrich
- Institut
für Chemie, Technische Universität Chemnitz, 09111 Chemnitz, Germany
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182
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Makhnev VY, Kyuberis AA, Zobov NF, Lodi L, Tennyson J, Polyansky OL. High Accuracy ab Initio Calculations of Rotational-Vibrational Levels of the HCN/HNC System. J Phys Chem A 2018; 122:1326-1343. [PMID: 29251934 DOI: 10.1021/acs.jpca.7b10483] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Abstract
Highly accurate ab initio calculations of vibrational and rotational-vibrational energy levels of the HCN/HNC (hydrogen cyanide/hydrogen isocyanide) isomerising system are presented for several isotopologues. All-electron multireference configuration interaction (MRCI) electronic structure calculations were performed using basis sets up to aug-cc-pCV6Z on a grid of 1541 geometries. The ab initio energies were used to produce an analytical potential energy surface (PES) describing the two minima simultaneously. An adiabatic Born-Oppenheimer diagonal correction (BODC) correction surface as well as a relativistic correction surface were also calculated. These surfaces were used to compute vibrational and rotational-vibrational energy levels up to 25 000 cm-1 which reproduce the extensive set of experimentally known HCN/HNC levels with a root-mean-square deviation σ = 1.5 cm-1. We studied the effect of nonadiabatic effects by introducing opportune radial and angular corrections to the nuclear kinetic energy operator. Empirical determination of two nonadiabatic parameters results in observed energies up to 7000 cm-1 for four HCN isotopologues (HCN, DCN, H13CN, and HC15N) being reproduced with σ = 0.37 cm-1. The height of the isomerization barrier, the isomerization energy and the dissociation energy were computed using a number of models; our best results are 16 809.4, 5312.8, and 43 729 cm-1, respectively.
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Affiliation(s)
- Vladimir Yu Makhnev
- Institute of Applied Physics, Russian Academy of Science , Ulyanov Street 46, Nizhny Novgorod, Russia 603950
| | - Aleksandra A Kyuberis
- Institute of Applied Physics, Russian Academy of Science , Ulyanov Street 46, Nizhny Novgorod, Russia 603950
| | - Nikolai F Zobov
- Institute of Applied Physics, Russian Academy of Science , Ulyanov Street 46, Nizhny Novgorod, Russia 603950
| | - Lorenzo Lodi
- Department of Physics and Astronomy, University College London , Gower Street, London WC1E 6BT, United Kingdom
| | - Jonathan Tennyson
- Department of Physics and Astronomy, University College London , Gower Street, London WC1E 6BT, United Kingdom
| | - Oleg L Polyansky
- Institute of Applied Physics, Russian Academy of Science , Ulyanov Street 46, Nizhny Novgorod, Russia 603950.,Department of Physics and Astronomy, University College London , Gower Street, London WC1E 6BT, United Kingdom
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183
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Reimers JR, Sajid A, Kobayashi R, Ford MJ. Understanding and Calibrating Density-Functional-Theory Calculations Describing the Energy and Spectroscopy of Defect Sites in Hexagonal Boron Nitride. J Chem Theory Comput 2018; 14:1602-1613. [DOI: 10.1021/acs.jctc.7b01072] [Citation(s) in RCA: 53] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Jeffrey R. Reimers
- International Centre for Quantum and Molecular Structures and Department of Physics, Shanghai University, Shanghai 200444, China
- School of Mathematical and Physical Sciences, University of Technology Sydney, Ultimo, New South Wales 2007, Australia
| | - A. Sajid
- School of Mathematical and Physical Sciences, University of Technology Sydney, Ultimo, New South Wales 2007, Australia
- Department of Physics, GC University Faisalabad, Allama Iqbal Road, 38000 Faisalabad, Pakistan
| | - Rika Kobayashi
- National Computational Infrastructure, The Australian National University, Canberra, Austrailian Capital Territory 2600, Australia
| | - Michael J. Ford
- School of Mathematical and Physical Sciences, University of Technology Sydney, Ultimo, New South Wales 2007, Australia
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184
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Usvyat D, Maschio L, Schütz M. Periodic and fragment models based on the local correlation approach. WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL MOLECULAR SCIENCE 2018. [DOI: 10.1002/wcms.1357] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Affiliation(s)
- Denis Usvyat
- Institut für ChemieHumboldt‐Universität zu BerlinBerlinGermany
| | - Lorenzo Maschio
- Dipartimento di Chimica and NIS (Nanostructured Interfaces and Surfaces) CentreUniversità di TorinoTorinoItaly
| | - Martin Schütz
- Institut für ChemieHumboldt‐Universität zu BerlinBerlinGermany
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185
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Wiens AE, Copan AV, Rossomme EC, Aroeira GJR, Bernstein OM, Agarwal J, Schaefer HF. Reinterpreting the infrared spectrum of H + HCN: Methylene amidogen radical and its coproducts. J Chem Phys 2018; 148:014305. [DOI: 10.1063/1.5004984] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Avery E. Wiens
- Center for Computational Quantum Chemistry, University of Georgia, Athens, Georgia 30602, USA
| | - Andreas V. Copan
- Center for Computational Quantum Chemistry, University of Georgia, Athens, Georgia 30602, USA
| | - Elliot C. Rossomme
- Center for Computational Quantum Chemistry, University of Georgia, Athens, Georgia 30602, USA
| | - Gustavo J. R. Aroeira
- Center for Computational Quantum Chemistry, University of Georgia, Athens, Georgia 30602, USA
| | - Olivia M. Bernstein
- Center for Computational Quantum Chemistry, University of Georgia, Athens, Georgia 30602, USA
| | - Jay Agarwal
- Center for Computational Quantum Chemistry, University of Georgia, Athens, Georgia 30602, USA
| | - Henry F. Schaefer
- Center for Computational Quantum Chemistry, University of Georgia, Athens, Georgia 30602, USA
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186
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Karton A, McKemmish LK. Can Popular DFT Approximations and Truncated Coupled Cluster Theory Describe the Potential Energy Surface of the Beryllium Dimer? Aust J Chem 2018. [DOI: 10.1071/ch18269] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
The potential energy surface (PES) of the ground state of the beryllium dimer poses a significant challenge for high-level ab initio electronic structure methods. Here, we present a systematic study of basis set effects over the entire PES of Be2 calculated at the full configuration interaction (FCI) level. The reference PES is calculated at the valence FCI/cc-pV{5,6}Z level of theory. We find that the FCI/cc-pV{T,Q}Z basis set extrapolation reproduces the shape of the FCI/cc-pV{5,6}Z PES as well as the binding energy and vibrational transition frequencies to within ~10 cm−1. We also use the FCI/cc-pV{5,6}Z PES to evaluate the performance of truncated coupled cluster methods (CCSD, CCSD(T), CCSDT, and CCSDT(Q)) and contemporary density functional theory methods (DFT) methods for the entire PES of Be2. Of the truncated coupled cluster methods, CCSDT(Q)/cc-pV{5,6}Z provides a good representation of the FCI/cc-pV{5,6}Z PES. The GGA functionals, as well as the HGGA and HMGGA functionals with low percentages of exact exchange tend to severely overbind the Be2 dimer, whereas BH&HLYP and M06-HF tend to underbind it. Range-separated DFT functionals tend to underbind the dimer. Double-hybrid DFT functionals show surprisingly good performance, with DSD-PBEP86 being the best performer. Møller–Plesset perturbation theory converges smoothly up to fourth order; however, fifth-order corrections have practically no effect on the PES.
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187
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Tan XF, Long B, Ren DS, Zhang WJ, Long ZW, Mitchell E. Atmospheric chemistry of CH3CHO: the hydrolysis of CH3CHO catalyzed by H2SO4. Phys Chem Chem Phys 2018; 20:7701-7709. [DOI: 10.1039/c7cp07312g] [Citation(s) in RCA: 30] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We found the catalytic effect of H2SO4 on the hydrolysis of CH3CHO in the atmosphere.
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Affiliation(s)
- Xing-Feng Tan
- School of Mechatronics Engineering
- Guizhou Minzu University
- Guiyang
- China
| | - Bo Long
- School of Materials Science and Engineering
- Guizhou Minzu University
- Guiyang
- China
| | - Da-Sen Ren
- School of Materials Science and Engineering
- Guizhou Minzu University
- Guiyang
- China
| | - Wei-Jun Zhang
- Laboratory of Atmospheric Physico-Chemistry
- Anhui Institute of Optics and Fine Mechanics
- Chinese Academy of Sciences
- Hefei
- China
| | | | - Ellen Mitchell
- Department of Chemistry
- Bridgewater College
- Bridgewater
- USA
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188
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Chan B, Simmie JM. Barriometry – an enhanced database of accurate barrier heights for gas-phase reactions. Phys Chem Chem Phys 2018; 20:10732-10740. [DOI: 10.1039/c7cp08045j] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Abstract
The kinetics of many reactions are critically dependent upon the barrier heights for which accurate determination can be difficult. More than 100 accurate barriers are obtained with the high-level W3X-L composite procedure.
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Affiliation(s)
- Bun Chan
- Graduate School of Engineering
- Nagasaki University
- Nagasaki 852-8521
- Japan
| | - John M. Simmie
- School of Chemistry
- National University of Ireland
- Galway
- Ireland
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189
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Franke PR, Douberly GE. Rotamers of Isoprene: Infrared Spectroscopy in Helium Droplets and Ab Initio Thermochemistry. J Phys Chem A 2017; 122:148-158. [DOI: 10.1021/acs.jpca.7b10260] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Peter R. Franke
- Department of Chemistry, University of Georgia, Athens, Georgia 30602-2556, United States
| | - Gary E. Douberly
- Department of Chemistry, University of Georgia, Athens, Georgia 30602-2556, United States
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190
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Condoluci J, Janardan S, Calvin AT, Rugango R, Shu G, Sherrill CD, Brown KR. Reassigning the CaH+ 11Σ → 21Σ vibronic transition with CaD+. J Chem Phys 2017; 147:214309. [DOI: 10.1063/1.5016556] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023] Open
Affiliation(s)
- J. Condoluci
- School of Chemistry and Biochemistry, Georgia Institute of Technology, Atlanta, Georgia 30332, USA
| | - S. Janardan
- School of Chemistry and Biochemistry, Georgia Institute of Technology, Atlanta, Georgia 30332, USA
| | - A. T. Calvin
- School of Chemistry and Biochemistry, Georgia Institute of Technology, Atlanta, Georgia 30332, USA
| | - R. Rugango
- School of Chemistry and Biochemistry, Georgia Institute of Technology, Atlanta, Georgia 30332, USA
| | - G. Shu
- School of Chemistry and Biochemistry, Georgia Institute of Technology, Atlanta, Georgia 30332, USA
| | - C. D. Sherrill
- School of Chemistry and Biochemistry, Georgia Institute of Technology, Atlanta, Georgia 30332, USA
- School of Computational Science and Engineering, Georgia Institute of Technology, Atlanta, Georgia 30332, USA
| | - K. R. Brown
- School of Chemistry and Biochemistry, Georgia Institute of Technology, Atlanta, Georgia 30332, USA
- School of Computational Science and Engineering, Georgia Institute of Technology, Atlanta, Georgia 30332, USA
- School of Physics, Georgia Institute of Technology, Atlanta, Georgia 30332, USA
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191
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Fiedler B, Schmitz G, Hättig C, Friedrich J. Combining Accuracy and Efficiency: An Incremental Focal-Point Method Based on Pair Natural Orbitals. J Chem Theory Comput 2017; 13:6023-6042. [PMID: 29045786 DOI: 10.1021/acs.jctc.7b00654] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Abstract
In this work, we present a new pair natural orbitals (PNO)-based incremental scheme to calculate CCSD(T) and CCSD(T0) reaction, interaction, and binding energies. We perform an extensive analysis, which shows small incremental errors similar to previous non-PNO calculations. Furthermore, slight PNO errors are obtained by using TPNO = TTNO with appropriate values of 10-7 to 10-8 for reactions and 10-8 for interaction or binding energies. The combination with the efficient MP2 focal-point approach yields chemical accuracy relative to the complete basis-set (CBS) limit. In this method, small basis sets (cc-pVDZ, def2-TZVP) for the CCSD(T) part are sufficient in case of reactions or interactions, while some larger ones (e.g., (aug)-cc-pVTZ) are necessary for molecular clusters. For these larger basis sets, we show the very high efficiency of our scheme. We obtain not only tremendous decreases of the wall times (i.e., factors >102) due to the parallelization of the increment calculations as well as of the total times due to the application of PNOs (i.e., compared to the normal incremental scheme) but also smaller total times with respect to the standard PNO method. That way, our new method features a perfect applicability by combining an excellent accuracy with a very high efficiency as well as the accessibility to larger systems due to the separation of the full computation into several small increments.
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Affiliation(s)
- Benjamin Fiedler
- Institut für Chemie, Technische Universität Chemnitz , 09111 Chemnitz, Germany
| | - Gunnar Schmitz
- Institut for Kemi, Aarhus Universitet , 8000 Aarhus C, Denmark
| | - Christof Hättig
- Lehrstuhl für Theoretische Chemie, Ruhr-Universität Bochum , 44801 Bochum, Germany
| | - Joachim Friedrich
- Institut für Chemie, Technische Universität Chemnitz , 09111 Chemnitz, Germany
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192
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Black JA, Knowles PJ. Statistical analysis of activation and reaction energies with quasi-variational coupled-cluster theory. Mol Phys 2017. [DOI: 10.1080/00268976.2017.1400698] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Affiliation(s)
- Joshua A. Black
- School of Chemistry, Cardiff University, Cardiff, United Kingdom
| | - Peter J. Knowles
- School of Chemistry, Cardiff University, Cardiff, United Kingdom
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193
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Földes T, Madarász Á, Révész Á, Dobi Z, Varga S, Hamza A, Nagy PR, Pihko PM, Pápai I. Stereocontrol in Diphenylprolinol Silyl Ether Catalyzed Michael Additions: Steric Shielding or Curtin–Hammett Scenario? J Am Chem Soc 2017; 139:17052-17063. [DOI: 10.1021/jacs.7b07097] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Affiliation(s)
- Tamás Földes
- Institute
of Organic Chemistry, Research Centre for Natural Sciences, Hungarian Academy of Sciences, Magyar tudósok körútja 2, H-1117 Budapest, Hungary
| | - Ádám Madarász
- Institute
of Organic Chemistry, Research Centre for Natural Sciences, Hungarian Academy of Sciences, Magyar tudósok körútja 2, H-1117 Budapest, Hungary
| | - Ágnes Révész
- Institute
of Organic Chemistry, Research Centre for Natural Sciences, Hungarian Academy of Sciences, Magyar tudósok körútja 2, H-1117 Budapest, Hungary
| | - Zoltán Dobi
- Institute
of Organic Chemistry, Research Centre for Natural Sciences, Hungarian Academy of Sciences, Magyar tudósok körútja 2, H-1117 Budapest, Hungary
| | - Szilárd Varga
- Institute
of Organic Chemistry, Research Centre for Natural Sciences, Hungarian Academy of Sciences, Magyar tudósok körútja 2, H-1117 Budapest, Hungary
| | - Andrea Hamza
- Institute
of Organic Chemistry, Research Centre for Natural Sciences, Hungarian Academy of Sciences, Magyar tudósok körútja 2, H-1117 Budapest, Hungary
| | - Péter R. Nagy
- MTA-BME
Lendület Quantum Chemistry Research Group, Department of Physical
Chemistry and Materials Science, Budapest University of Technology and Economics, P.O. Box 91, H-1521 Budapest, Hungary
| | - Petri M. Pihko
- Department
of Chemistry and NanoScience Center, University of Jyväskylä, FI-40014 Jyväskylä, Finland
| | - Imre Pápai
- Institute
of Organic Chemistry, Research Centre for Natural Sciences, Hungarian Academy of Sciences, Magyar tudósok körútja 2, H-1117 Budapest, Hungary
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194
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Moore KB, Sadeghian K, Sherrill CD, Ochsenfeld C, Schaefer HF. C-H···O Hydrogen Bonding. The Prototypical Methane-Formaldehyde System: A Critical Assessment. J Chem Theory Comput 2017; 13:5379-5395. [PMID: 29039941 DOI: 10.1021/acs.jctc.7b00753] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
Abstract
Distinguishing the functionality of C-H···O hydrogen bonds (HBs) remains challenging, because their properties are difficult to quantify reliably. Herein, we present a study of the model methane-formaldehyde complex (MFC). Six stationary points on the MFC potential energy surface (PES) were obtained at the CCSD(T)/ANO2 level. The CCSDT(Q)/CBS interaction energies of the conformers range from only -1.12 kcal mol-1 to -0.33 kcal mol-1, denoting a very flat PES. Notably, only the lowest energy stationary point (MFC1) corresponds to a genuine minimum, whereas all other stationary points-including the previously studied ideal case of ae(C-H···O) = 180°-exhibit some degree of freedom that leads to MFC1. Despite the flat PES, we clearly see that the HB properties of MFC1 align with those of the prototypical water dimer O-H···O HB. Each HB property generally becomes less prominent in the higher-energy conformers. Only the MFC1 conformer prominently exhibits (1) elongated C-H donor bonds, (2) attractive C-H···O═C interactions, (3) n(O) → σ*(C-H) hyperconjugation, (4) critical points in the electron density from Bader's method and from the noncovalent interactions method, (5) positively charged donor hydrogen, and (6) downfield NMR chemical shifts and nonzero 2J(CM-HM···OF) coupling constants. Based on this research, some issues merit further study. The flat PES hinders reliable determinations of the HB-induced shifts of the C-H stretches; a similarly difficult challenge is observed for the experiment. The role of charge transfer in HBs remains an intriguing open question, although our BLW and NBO computations suggest that it is relevant to the C-H···O HB geometries. These issues notwithstanding, the prominence of the HB properties in MFC1 serves as clear evidence that the MFC is predominantly bound by a C-H···O HB.
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Affiliation(s)
- Kevin B Moore
- Center for Computational Quantum Chemistry, University of Georgia , Athens, Georgia 30602, United States
| | - Keyarash Sadeghian
- Department of Chemistry, Ludwig-Maximilians University (LMU) , Munich D-81377, Germany
| | - C David Sherrill
- Center for Computational Molecular Science and Technology, School of Chemistry and Biochemistry, School of Computational Science and Engineering, Georgia Institute of Technology , Atlanta, Georgia 30332, United States
| | - Christian Ochsenfeld
- Department of Chemistry, Ludwig-Maximilians University (LMU) , Munich D-81377, Germany
| | - Henry F Schaefer
- Center for Computational Quantum Chemistry, University of Georgia , Athens, Georgia 30602, United States
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195
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Varga Z, Paukku Y, Truhlar DG. Potential energy surfaces for O + O2 collisions. J Chem Phys 2017; 147:154312. [PMID: 29055336 DOI: 10.1063/1.4997169] [Citation(s) in RCA: 55] [Impact Index Per Article: 7.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Zoltan Varga
- Department of Chemistry, Chemical Theory Center, and Supercomputing Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, USA
| | - Yuliya Paukku
- Department of Chemistry, Chemical Theory Center, and Supercomputing Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, USA
| | - Donald G. Truhlar
- Department of Chemistry, Chemical Theory Center, and Supercomputing Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, USA
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196
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Estep ML, Morgan WJ, Winkles AT, Abbott AS, Villegas-Escobar N, Mullinax JW, Turner WE, Wang X, Turney JM, Schaefer HF. Radicals derived from acetaldehyde and vinyl alcohol. Phys Chem Chem Phys 2017; 19:27275-27287. [PMID: 28868538 DOI: 10.1039/c7cp04671e] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Vinyl alcohol and acetaldehyde are isoelectronic products of incomplete butanol combustion. Along with the radicals resulting from the removal of atomic hydrogen or the hydroxyl radical, these species are studied here using ab initio methods as complete as coupled cluster theory with single, double, triple, and perturbative quadruple excitations [CCSDT(Q)], with basis sets as large as cc-pV5Z. The relative energies provided herein are further refined by including corrections for relativistic effects, the frozen core approximation, and the Born-Oppenheimer approximation. The effects of anharmonic zero-point vibrational energies are also treated. The syn conformer of vinyl alcohol is predicted to be lower in energy than the anti conformer by 1.1 kcal mol-1. The alcoholic hydrogen of syn-vinyl alcohol is found to be the easiest to remove, requiring 84.4 kcal mol-1. Five other radicals are also carefully considered, with four conformers investigated for the 1-hydroxyvinyl radical. Beyond energetics, we have conducted an overhaul of the spectroscopic literature for these species. Our results also provide predictions for fundamental modes yet to be reported experimentally. To our knowledge, the ν3 (3076 cm-1) and ν4 (2999 cm-1) C-H stretches for syn-vinyl alcohol and all but one of the vibrational modes for anti-vinyl alcohol (ν1-ν14) are yet to be observed experimentally. For the acetyl radical, ν6 (1035 cm-1), ν11 (944 cm-1), ν12 (97 cm-1), and accounting for our changes to the assignment of the 1419.9 cm-1 experimental mode, ν10 (1441 cm-1), are yet to be observed. We have predicted these unobserved fundamentals and reassigned the experimental 1419.9 cm-1 frequency in the acetyl radical to ν4 rather than to ν10. Our work also strongly supports reassignment of the ν10 and ν11 fundamentals of the vinoxy radical. We suggest that the bands assigned to the overtones of these fundamentals were in fact combination bands. Our findings may be useful in constructing improved combustion models of butanol and in spectroscopically characterizing these molecules further.
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Affiliation(s)
- Marissa L Estep
- Center for Computational Quantum Chemistry, University of Georgia, Athens, Georgia 30602, USA.
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197
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Würmel J, Simmie JM. H-Atom Abstraction Reactions by Ground-State Ozone from Saturated Oxygenates. J Phys Chem A 2017; 121:8053-8060. [DOI: 10.1021/acs.jpca.7b07760] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- J. Würmel
- Galway Mayo Institute of Technology, Galway H91 T8NW, Ireland
| | - J. M. Simmie
- School
of Chemistry, National University of Ireland, Galway H91 TK33, Ireland
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198
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Jiao Y, Dibble TS. Structures, Vibrational Frequencies, and Bond Energies of the BrHgOX and BrHgXO Species Formed in Atmospheric Mercury Depletion Events. J Phys Chem A 2017; 121:7976-7985. [DOI: 10.1021/acs.jpca.7b06829] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Yuge Jiao
- Department of Chemistry, State University of New York, College of Environmental Science and Forestry, 1 Forestry Drive, Syracuse, New York 13210, United States
| | - Theodore S. Dibble
- Department of Chemistry, State University of New York, College of Environmental Science and Forestry, 1 Forestry Drive, Syracuse, New York 13210, United States
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199
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Solomonik VG, Smirnov AN. Toward Chemical Accuracy in ab Initio Thermochemistry and Spectroscopy of Lanthanide Compounds: Assessing Core–Valence Correlation, Second-Order Spin–Orbit Coupling, and Higher Order Effects in Lanthanide Diatomics. J Chem Theory Comput 2017; 13:5240-5254. [DOI: 10.1021/acs.jctc.7b00408] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Victor G. Solomonik
- Ivanovo State University of Chemistry and Technology, Ivanovo 153000, Russia
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200
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Plascencia C, Wang J, Wilson AK. Importance of the ligand basis set in ab initio thermochemical calculations of transition metal species. Chem Phys Lett 2017. [DOI: 10.1016/j.cplett.2017.08.003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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