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For: Schwalbe H, Fiebig KM, Buck M, Jones JA, Grimshaw SB, Spencer A, Glaser SJ, Smith LJ, Dobson CM. Structural and dynamical properties of a denatured protein. Heteronuclear 3D NMR experiments and theoretical simulations of lysozyme in 8 M urea. Biochemistry 1997;36:8977-91. [PMID: 9220986 DOI: 10.1021/bi970049q] [Citation(s) in RCA: 226] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Number Cited by Other Article(s)
201
Serrano L. The relationship between sequence and structure in elementary folding units. ADVANCES IN PROTEIN CHEMISTRY 2000;53:49-85. [PMID: 10751943 DOI: 10.1016/s0065-3233(00)53002-2] [Citation(s) in RCA: 49] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
202
Lane AN, Hays LM, Tsvetkova N, Feeney RE, Crowe LM, Crowe JH. Comparison of the solution conformation and dynamics of antifreeze glycoproteins from Antarctic fish. Biophys J 2000;78:3195-207. [PMID: 10827996 PMCID: PMC1300901 DOI: 10.1016/s0006-3495(00)76856-1] [Citation(s) in RCA: 35] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]  Open
203
Petrescu AJ, Calmettes P, Durand D, Receveur V, Smith JC. Change in backbone torsion angle distribution on protein folding. Protein Sci 2000;9:1129-36. [PMID: 10892806 PMCID: PMC2144660 DOI: 10.1110/ps.9.6.1129] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
204
Wong KB, Clarke J, Bond CJ, Neira JL, Freund SM, Fersht AR, Daggett V. Towards a complete description of the structural and dynamic properties of the denatured state of barnase and the role of residual structure in folding. J Mol Biol 2000;296:1257-82. [PMID: 10698632 DOI: 10.1006/jmbi.2000.3523] [Citation(s) in RCA: 145] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
205
Brockwell DJ, Smith DA, Radford SE. Protein folding mechanisms: new methods and emerging ideas. Curr Opin Struct Biol 2000;10:16-25. [PMID: 10679463 DOI: 10.1016/s0959-440x(99)00043-3] [Citation(s) in RCA: 108] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
206
Gilquin B, Guilbert C, Perahia D. Unfolding of hen egg lysozyme by molecular dynamics simulations at 300K: Insight into the role of the interdomain interface. Proteins 2000. [DOI: 10.1002/1097-0134(20001001)41:1<58::aid-prot90>3.0.co;2-3] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
207
Alexandrescu AT, Rathgeb-Szabo K. An NMR investigation of solution aggregation reactions preceding the misassembly of acid-denatured cold shock protein A into fibrils. J Mol Biol 1999;291:1191-206. [PMID: 10518954 DOI: 10.1006/jmbi.1999.3039] [Citation(s) in RCA: 41] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
208
Grimsley GR, Shaw KL, Fee LR, Alston RW, Huyghues-Despointes BM, Thurlkill RL, Scholtz JM, Pace CN. Increasing protein stability by altering long-range coulombic interactions. Protein Sci 1999;8:1843-9. [PMID: 10493585 PMCID: PMC2144408 DOI: 10.1110/ps.8.9.1843] [Citation(s) in RCA: 171] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
209
Fulton KF, Main ER, Daggett V, Jackson SE. Mapping the interactions present in the transition state for unfolding/folding of FKBP12. J Mol Biol 1999;291:445-61. [PMID: 10438631 DOI: 10.1006/jmbi.1999.2942] [Citation(s) in RCA: 105] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
210
Lyon CE, Jones JA, Redfield C, Dobson CM, Hore PJ. Two-Dimensional 15N−1H Photo-CIDNP as a Surface Probe of Native and Partially Structured Proteins. J Am Chem Soc 1999. [DOI: 10.1021/ja9907663] [Citation(s) in RCA: 32] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
211
Morozova-Roche LA, Jones JA, Noppe W, Dobson CM. Independent nucleation and heterogeneous assembly of structure during folding of equine lysozyme. J Mol Biol 1999;289:1055-73. [PMID: 10369782 DOI: 10.1006/jmbi.1999.2741] [Citation(s) in RCA: 65] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
212
Hennig M, Bermel W, Spencer A, Dobson CM, Smith LJ, Schwalbe H. Side-chain conformations in an unfolded protein: chi1 distributions in denatured hen lysozyme determined by heteronuclear 13C, 15N NMR spectroscopy. J Mol Biol 1999;288:705-23. [PMID: 10329174 DOI: 10.1006/jmbi.1999.2722] [Citation(s) in RCA: 64] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
213
Luisi DL, Wu WJ, Raleigh DP. Conformational analysis of a set of peptides corresponding to the entire primary sequence of the N-terminal domain of the ribosomal protein L9: evidence for stable native-like secondary structure in the unfolded state. J Mol Biol 1999;287:395-407. [PMID: 10080901 DOI: 10.1006/jmbi.1999.2595] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
214
Spector S, Rosconi M, Raleigh DP. Conformational analysis of peptide fragments derived from the peripheral subunit-binding domain from the pyruvate dehydrogenase multienzyme complex of Bacillus stearothermophilus: evidence for nonrandom structure in the unfolded state. Biopolymers 1999;49:29-40. [PMID: 10070261 DOI: 10.1002/(sici)1097-0282(199901)49:1<29::aid-bip4>3.0.co;2-7] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
215
Beeser SA, Oas TG, Goldenberg DP. Determinants of backbone dynamics in native BPTI: cooperative influence of the 14-38 disulfide and the Tyr35 side-chain. J Mol Biol 1998;284:1581-96. [PMID: 9878372 DOI: 10.1006/jmbi.1998.2240] [Citation(s) in RCA: 32] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
216
Sugita Y, Kitao A. Dependence of protein stability on the structure of the denatured state: free energy calculations of I56V mutation in human lysozyme. Biophys J 1998;75:2178-87. [PMID: 9788912 PMCID: PMC1299891 DOI: 10.1016/s0006-3495(98)77661-1] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]  Open
217
West NJ, Smith LJ. Side-chains in native and random coil protein conformations. Analysis of NMR coupling constants and chi1 torsion angle preferences. J Mol Biol 1998;280:867-77. [PMID: 9671556 DOI: 10.1006/jmbi.1998.1911] [Citation(s) in RCA: 32] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
218
Smith LJ, Mark AE, Dobson CM, van Gunsteren WF. Molecular dynamics simulations of peptide fragments from hen lysozyme: insight into non-native protein conformations. J Mol Biol 1998;280:703-19. [PMID: 9677298 DOI: 10.1006/jmbi.1998.1892] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
219
Lane AN, Hays LM, Feeney RE, Crowe LM, Crowe JH. Conformational and dynamic properties of a 14 residue antifreeze glycopeptide from Antarctic cod. Protein Sci 1998;7:1555-63. [PMID: 9684888 PMCID: PMC2144051 DOI: 10.1002/pro.5560070709] [Citation(s) in RCA: 40] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
220
Guerois R, Cordier-Ochsenbein F, Baleux F, Huynh-Dinh T, Neumann JM, Sanson A. A conformational equilibrium in a protein fragment caused by two consecutive capping boxes: 1H-, 13C-NMR, and mutational analysis. Protein Sci 1998;7:1506-15. [PMID: 9684882 PMCID: PMC2144069 DOI: 10.1002/pro.5560070703] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
221
Cordier-Ochsenbein F, Guerois R, Baleux F, Huynh-Dinh T, Lirsac PN, Russo-Marie F, Neumann JM, Sanson A. Exploring the folding pathways of annexin I, a multidomain protein. I. non-native structures stabilize the partially folded state of the isolated domain 2 of annexin I. J Mol Biol 1998;279:1163-75. [PMID: 9642092 DOI: 10.1006/jmbi.1998.1829] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
222
Sugita Y, Kitao A, Go N. Computational analysis of thermal stability: effect of Ile-->Val mutations in human lysozyme. FOLDING & DESIGN 1998;3:173-81. [PMID: 9562548 DOI: 10.1016/s1359-0278(98)00025-x] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
223
Kazmirski SL, Daggett V. Simulations of the structural and dynamical properties of denatured proteins: the "molten coil" state of bovine pancreatic trypsin inhibitor. J Mol Biol 1998;277:487-506. [PMID: 9514766 DOI: 10.1006/jmbi.1998.1634] [Citation(s) in RCA: 48] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
224
Alexandrescu AT, Rathgeb-Szabo K, Rumpel K, Jahnke W, Schulthess T, Kammerer RA. 15N backbone dynamics of the S-peptide from ribonuclease A in its free and S-protein bound forms: toward a site-specific analysis of entropy changes upon folding. Protein Sci 1998;7:389-402. [PMID: 9521116 PMCID: PMC2143926 DOI: 10.1002/pro.5560070220] [Citation(s) in RCA: 33] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
225
Bond CJ, Wong KB, Clarke J, Fersht AR, Daggett V. Characterization of residual structure in the thermally denatured state of barnase by simulation and experiment: description of the folding pathway. Proc Natl Acad Sci U S A 1997;94:13409-13. [PMID: 9391038 PMCID: PMC28318 DOI: 10.1073/pnas.94.25.13409] [Citation(s) in RCA: 103] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]  Open
226
Penkett CJ, Redfield C, Dodd I, Hubbard J, McBay DL, Mossakowska DE, Smith RA, Dobson CM, Smith LJ. NMR analysis of main-chain conformational preferences in an unfolded fibronectin-binding protein. J Mol Biol 1997;274:152-9. [PMID: 9398523 DOI: 10.1006/jmbi.1997.1369] [Citation(s) in RCA: 112] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
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