201
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NaX solvation bonding dynamics:hydrogen bond and surface stress transition (X = HSO4, NO3, ClO4, SCN). J Mol Liq 2017. [DOI: 10.1016/j.molliq.2017.10.048] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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202
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Hirano A, Gao W, He X, Kono J. Destabilization of Surfactant-Dispersed Carbon Nanotubes by Anions. NANOSCALE RESEARCH LETTERS 2017; 12:81. [PMID: 28138897 PMCID: PMC5280815 DOI: 10.1186/s11671-017-1850-1] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/26/2016] [Accepted: 01/16/2017] [Indexed: 05/29/2023]
Abstract
The colloidal stability of surfactant-dispersed single-wall carbon nanotubes (SWCNTs) is determined by microscopic physicochemical processes, such as association, partitioning, and adsorption propensities. These processes can be controlled by the addition of solutes. While the effects of cations on the colloidal stability of SWCNTs are relatively well understood, little is known about the effects of anions. In this study, we examined the effects of anions on the stability of SWCNTs dispersed by sodium dodecyl sulfate (SDS) using sodium salts, such as NaCl and NaSCN. We observed that the intensity of the radial breathing mode Raman peaks rapidly decreased as the salts were added, even at concentrations less than 25 mM, indicating the association of SWCNTs. The effect was stronger with NaSCN than NaCl. We propose that the association of SWCNTs was caused by thermodynamic destabilization of SDS assemblies on SWCNT surfaces by these salts, which was confirmed through SWCNT separation experiments using aqueous two-phase extraction and gel chromatography. These results demonstrate that neutral salts can be used to control the colloidal stability of surfactant-dispersed SWCNTs.
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Affiliation(s)
- Atsushi Hirano
- Nanomaterials Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba, Ibaraki 305-8565 Japan
| | - Weilu Gao
- Department of Electrical and Computer Engineering, Rice University, Houston, TX 77005 USA
| | - Xiaowei He
- Department of Electrical and Computer Engineering, Rice University, Houston, TX 77005 USA
| | - Junichiro Kono
- Department of Electrical and Computer Engineering, Rice University, Houston, TX 77005 USA
- Department of Physics and Astronomy, Rice University, Houston, TX 77005 USA
- Department of Materials Science and NanoEngineering, Rice University, Houston, TX 77005 USA
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203
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Bohinc K, Bossa GV, May S. Incorporation of ion and solvent structure into mean-field modeling of the electric double layer. Adv Colloid Interface Sci 2017; 249:220-233. [PMID: 28571611 DOI: 10.1016/j.cis.2017.05.001] [Citation(s) in RCA: 57] [Impact Index Per Article: 8.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2017] [Revised: 04/28/2017] [Accepted: 05/02/2017] [Indexed: 01/13/2023]
Abstract
An electric double layer forms when the small mobile ions of an electrolyte interact with an extended charged object, a macroion. The competition between electrostatic attraction and translational entropy loss of the small ions results in a diffuse layer of partially immobilized ions in the vicinity of the macroion. Modeling structure and energy of the electric double layer has a long history that has lead to the classical Poisson-Boltzmann theory and numerous extensions that account for ion-ion correlations and structural ion and solvent properties. The present review focuses on approaches that instead of going beyond the mean-field character of Poisson-Boltzmann theory introduce structural details of the ions and the solvent into the Poisson-Boltzmann modeling framework. The former include not only excluded volume effects but also the presence of charge distributions on individual ions, spatially extended ions, and internal ionic degrees of freedom. The latter treat the solvent either explicitly as interacting Langevin dipoles or in the form of effective non-electrostatic interactions, in particular Yukawa interactions, that are added to the Coulomb potential. We discuss how various theoretical models predict structural properties of the electric double layer such as the differential capacitance and compare some of these predictions with computer simulations.
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Affiliation(s)
- Klemen Bohinc
- Faculty of Health Sciences, University of Ljubljana, Ljubljana SI-1000, Slovenia.
| | | | - Sylvio May
- Department of Physics, North Dakota State University, Fargo, ND 58108-6050, USA
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204
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Specific cation effects at aqueous solution-vapor interfaces: Surfactant-like behavior of Li + revealed by experiments and simulations. Proc Natl Acad Sci U S A 2017; 114:13363-13368. [PMID: 29078311 DOI: 10.1073/pnas.1707540114] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
It is now well established by numerous experimental and computational studies that the adsorption propensities of inorganic anions conform to the Hofmeister series. The adsorption propensities of inorganic cations, such as the alkali metal cations, have received relatively little attention. Here we use a combination of liquid-jet X-ray photoelectron experiments and molecular dynamics simulations to investigate the behavior of K+ and Li+ ions near the interfaces of their aqueous solutions with halide ions. Both the experiments and the simulations show that Li+ adsorbs to the aqueous solution-vapor interface, while K+ does not. Thus, we provide experimental validation of the "surfactant-like" behavior of Li+ predicted by previous simulation studies. Furthermore, we use our simulations to trace the difference in the adsorption of K+ and Li+ ions to a difference in the resilience of their hydration shells.
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205
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van der Vegt NFA, Nayar D. The Hydrophobic Effect and the Role of Cosolvents. J Phys Chem B 2017; 121:9986-9998. [DOI: 10.1021/acs.jpcb.7b06453] [Citation(s) in RCA: 75] [Impact Index Per Article: 10.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Affiliation(s)
- Nico F. A. van der Vegt
- Eduard-Zintl-Institut für
Anorganische und Physikalische Chemie, Center of Smart Interfaces, Technische Universität Darmstadt, Alarich-Weiss-Straße 10, 64287 Darmstadt, Germany
| | - Divya Nayar
- Eduard-Zintl-Institut für
Anorganische und Physikalische Chemie, Center of Smart Interfaces, Technische Universität Darmstadt, Alarich-Weiss-Straße 10, 64287 Darmstadt, Germany
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206
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Using chirality to probe the conformational dynamics and assembly of intrinsically disordered amyloid proteins. Sci Rep 2017; 7:12433. [PMID: 28970487 PMCID: PMC5624888 DOI: 10.1038/s41598-017-10525-5] [Citation(s) in RCA: 31] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2017] [Accepted: 08/09/2017] [Indexed: 12/22/2022] Open
Abstract
Intrinsically disordered protein (IDP) conformers occupy large regions of conformational space and display relatively flat energy surfaces. Amyloid-forming IDPs, unlike natively folded proteins, have folding trajectories that frequently involve movements up shallow energy gradients prior to the “downhill” folding leading to fibril formation. We suggest that structural perturbations caused by chiral inversions of amino acid side-chains may be especially valuable in elucidating these pathways of IDP folding. Chiral inversions are subtle in that they do not change side-chain size, flexibility, hydropathy, charge, or polarizability. They allow focus to be placed solely on the question of how changes in amino acid side-chain orientation, and the resultant alterations in peptide backbone structure, affect a peptide’s conformational landscape (Ramachandran space). If specific inversions affect folding and assembly, then the sites involved likely are important in mediating these processes. We suggest here a “focused chiral mutant library” approach for the unbiased study of amyloid-forming IDPs.
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207
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Narang P, Vepuri SB, Venkatesu P, Soliman ME. An unexplored remarkable PNIPAM-osmolyte interaction study: An integrated experimental and simulation approach. J Colloid Interface Sci 2017; 504:417-428. [DOI: 10.1016/j.jcis.2017.05.109] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2017] [Revised: 05/25/2017] [Accepted: 05/27/2017] [Indexed: 11/26/2022]
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208
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Mazzini V, Craig VSJ. What is the fundamental ion-specific series for anions and cations? Ion specificity in standard partial molar volumes of electrolytes and electrostriction in water and non-aqueous solvents. Chem Sci 2017; 8:7052-7065. [PMID: 29147533 PMCID: PMC5637464 DOI: 10.1039/c7sc02691a] [Citation(s) in RCA: 81] [Impact Index Per Article: 11.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2017] [Accepted: 08/19/2017] [Indexed: 11/21/2022] Open
Abstract
The importance of electrolyte solutions cannot be overstated. Beyond the ionic strength of electrolyte solutions the specific nature of the ions present is vital in controlling a host of properties. Therefore ion specificity is fundamentally important in physical chemistry, engineering and biology. The observation that the strengths of the effect of ions often follows well established series suggests that a single predictive and quantitative description of specific-ion effects covering a wide range of systems is possible. Such a theory would revolutionise applications of physical chemistry from polymer precipitation to drug design. Current approaches to understanding specific-ion effects involve consideration of the ions themselves, the solvent and relevant interfaces and the interactions between them. Here we investigate the specific-ion effects trends of standard partial molar volumes and electrostrictive volumes of electrolytes in water and eleven non-aqueous solvents. We choose these measures as they relate to bulk properties at infinite dilution, therefore they are the simplest electrolyte systems. This is done to test the hypothesis that the ions alone exhibit a specific-ion effect series that is independent of the solvent and unrelated to surface properties. The specific-ion effects trends of standard partial molar volumes and normalised electrostrictive volumes examined in this work show a fundamental ion-specific series that is reproduced across the solvents, which is the Hofmeister series for anions and the reverse lyotropic series for cations, supporting the hypothesis. This outcome is important in demonstrating that ion specificity is observed at infinite dilution and demonstrates that the complexity observed in the manifestation of specific-ion effects in a very wide range of systems is due to perturbations of solvent, surfaces and concentration on the underlying fundamental series. This knowledge will guide a general understanding of specific-ion effects and assist in the development of a quantitative predictive theory of ion specificity.
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Affiliation(s)
- Virginia Mazzini
- Department of Applied Mathematics , Research School of Physics and Engineering , The Australian National University , Canberra , ACT 2601 , Australia .
| | - Vincent S J Craig
- Department of Applied Mathematics , Research School of Physics and Engineering , The Australian National University , Canberra , ACT 2601 , Australia .
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209
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Gao M, Held C, Patra S, Arns L, Sadowski G, Winter R. Crowders and Cosolvents-Major Contributors to the Cellular Milieu and Efficient Means to Counteract Environmental Stresses. Chemphyschem 2017; 18:2951-2972. [DOI: 10.1002/cphc.201700762] [Citation(s) in RCA: 73] [Impact Index Per Article: 10.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2017] [Revised: 08/15/2017] [Indexed: 01/27/2023]
Affiliation(s)
- Mimi Gao
- TU Dortmund University; Faculty of Chemistry and Chemical Biology; Physical Chemistry I-Biophysical Chemistry; Otto Hahn Str. 4a 44227 Dortmund Germany
| | - Christoph Held
- TU Dortmund University; Department of Biochemical and Chemical Engineering; Emil-Figge-Str. 70 44227 Dortmund Germany
| | - Satyajit Patra
- TU Dortmund University; Faculty of Chemistry and Chemical Biology; Physical Chemistry I-Biophysical Chemistry; Otto Hahn Str. 4a 44227 Dortmund Germany
| | - Loana Arns
- TU Dortmund University; Faculty of Chemistry and Chemical Biology; Physical Chemistry I-Biophysical Chemistry; Otto Hahn Str. 4a 44227 Dortmund Germany
| | - Gabriele Sadowski
- TU Dortmund University; Department of Biochemical and Chemical Engineering; Emil-Figge-Str. 70 44227 Dortmund Germany
| | - Roland Winter
- TU Dortmund University; Faculty of Chemistry and Chemical Biology; Physical Chemistry I-Biophysical Chemistry; Otto Hahn Str. 4a 44227 Dortmund Germany
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210
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Christau S, Moeller T, Genzer J, Koehler R, von Klitzing R. Salt-Induced Aggregation of Negatively Charged Gold Nanoparticles Confined in a Polymer Brush Matrix. Macromolecules 2017. [DOI: 10.1021/acs.macromol.7b00866] [Citation(s) in RCA: 44] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Affiliation(s)
- Stephanie Christau
- Stranski
Laboratory for Physical Chemistry, Technische Universitaet Berlin, Str. des 17. Juni 124, 10623 Berlin, Germany
- Department of Chemical & Biomolecular Engineering, North Carolina State University, 911 Partners Way, Raleigh, North Carolina 27695-7905, United States
| | - Tim Moeller
- Stranski
Laboratory for Physical Chemistry, Technische Universitaet Berlin, Str. des 17. Juni 124, 10623 Berlin, Germany
| | - Jan Genzer
- Department of Chemical & Biomolecular Engineering, North Carolina State University, 911 Partners Way, Raleigh, North Carolina 27695-7905, United States
| | - Ralf Koehler
- Institute
of Soft Matter and Functional Materials (F-ISFM), Helmholtz-Zentrum Berlin, Hahn-Meitner-Platz 1, 14109 Berlin, Germany
- Landesamt fuer
Arbeitsschutz, Verbraucherschutz und Gesundheit, Muellroser Chaussee 50, 15236 Frankfurt (Oder), Germany
| | - Regine von Klitzing
- Department
of Physics, Soft Matter at Interfaces, Technische Universitaet Darmstadt, Alarich-Weiss-Strasse 10, 64287 Darmstadt, Germany
- Joint Laboratory
for Structural Research (JLSR) of Helmholtz-Zentrum Berlin fuer Materialien
und Energie (HZB), Institut für Physik, Humboldt-University Berlin, Newtonstr. 15, 12489 Berlin, Germany
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211
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Affinity of IDPs to their targets is modulated by ion-specific changes in kinetics and residual structure. Proc Natl Acad Sci U S A 2017; 114:9882-9887. [PMID: 28847960 DOI: 10.1073/pnas.1705105114] [Citation(s) in RCA: 57] [Impact Index Per Article: 8.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Intrinsically disordered proteins (IDPs) are characterized by a lack of defined structure. Instead, they populate ensembles of rapidly interconverting conformations with marginal structural stabilities. Changes in solution conditions such as temperature and crowding agents consequently affect IDPs more than their folded counterparts. Here we reveal that the residual structure content of IDPs is modulated both by ionic strength and by the type of ions present in solution. We show that these ion-specific structural changes result in binding affinity shifts of up to sixfold, which happen through alteration of both association and dissociation rates. These effects follow the Hofmeister series, but unlike the well-established effects on the stability of folded proteins, they already occur at low, hypotonic concentrations of salt. We attribute this sensitivity to the marginal stability of IDPs, which could have physiological implications given the role of IDPs in signaling, the asymmetric ion profiles of different cellular compartments, and the role of ions in biology.
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212
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Kim WK, Moncho-Jordá A, Roa R, Kanduč M, Dzubiella J. Cosolute Partitioning in Polymer Networks: Effects of Flexibility and Volume Transitions. Macromolecules 2017. [DOI: 10.1021/acs.macromol.7b01206] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Affiliation(s)
- Won Kyu Kim
- Institut
für Weiche Materie und Funktionale Materialien, Helmholtz-Zentrum Berlin, Hahn-Meitner-Platz 1, 14109 Berlin, Germany
| | - Arturo Moncho-Jordá
- Departamento
de Física Aplicada, Facultad de Ciencias, Universidad de Granada, Avenida Fuente Nueva, 18071 Granada, Spain
- Instituto
Carlos I de Física Teórica y Computacional, Facultad
de Ciencias, Universidad de Granada, Avenida Fuente Nueva S/N, 18071 Granada, Spain
| | - Rafael Roa
- Institut
für Weiche Materie und Funktionale Materialien, Helmholtz-Zentrum Berlin, Hahn-Meitner-Platz 1, 14109 Berlin, Germany
| | - Matej Kanduč
- Institut
für Weiche Materie und Funktionale Materialien, Helmholtz-Zentrum Berlin, Hahn-Meitner-Platz 1, 14109 Berlin, Germany
| | - Joachim Dzubiella
- Institut
für Weiche Materie und Funktionale Materialien, Helmholtz-Zentrum Berlin, Hahn-Meitner-Platz 1, 14109 Berlin, Germany
- Institut
für Physik, Humboldt-Universität zu Berlin, Newtonstr.
15, 12489 Berlin, Germany
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213
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Guo H, Mussault C, Marcellan A, Hourdet D, Sanson N. Hydrogels with Dual Thermoresponsive Mechanical Performance. Macromol Rapid Commun 2017; 38. [DOI: 10.1002/marc.201700287] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2017] [Revised: 06/06/2017] [Indexed: 12/21/2022]
Affiliation(s)
- Hui Guo
- Soft Matter Sciences and Engineering; ESPCI Paris; PSL Research University; CNRS UMR 7615; 10 rue Vauquelin F-75231 Paris cedex 05 France
- UPMC - University of Paris VI; Sorbonne Universités; 10 rue Vauquelin F-75231 Paris cedex 05 France
| | - Cécile Mussault
- Soft Matter Sciences and Engineering; ESPCI Paris; PSL Research University; CNRS UMR 7615; 10 rue Vauquelin F-75231 Paris cedex 05 France
- UPMC - University of Paris VI; Sorbonne Universités; 10 rue Vauquelin F-75231 Paris cedex 05 France
| | - Alba Marcellan
- Soft Matter Sciences and Engineering; ESPCI Paris; PSL Research University; CNRS UMR 7615; 10 rue Vauquelin F-75231 Paris cedex 05 France
- UPMC - University of Paris VI; Sorbonne Universités; 10 rue Vauquelin F-75231 Paris cedex 05 France
| | - Dominique Hourdet
- Soft Matter Sciences and Engineering; ESPCI Paris; PSL Research University; CNRS UMR 7615; 10 rue Vauquelin F-75231 Paris cedex 05 France
- UPMC - University of Paris VI; Sorbonne Universités; 10 rue Vauquelin F-75231 Paris cedex 05 France
| | - Nicolas Sanson
- Soft Matter Sciences and Engineering; ESPCI Paris; PSL Research University; CNRS UMR 7615; 10 rue Vauquelin F-75231 Paris cedex 05 France
- UPMC - University of Paris VI; Sorbonne Universités; 10 rue Vauquelin F-75231 Paris cedex 05 France
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214
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Smiatek J. Aqueous ionic liquids and their effects on protein structures: an overview on recent theoretical and experimental results. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2017; 29:233001. [PMID: 28398214 DOI: 10.1088/1361-648x/aa6c9d] [Citation(s) in RCA: 56] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
Ionic liquids (ILs) are used in a variety of technological and biological applications. Recent experimental and simulation results reveal the influence of aqueous ionic liquids on the stability of protein and enzyme structures. Depending on different parameters like the concentration and the ion composition, one can observe distinct stabilization or denaturation mechanisms for various ILs. In this review, we summarize the main findings and discuss the implications with regard to molecular theories of solutions and specific ion effects. A preferential binding model is introduced in order to discuss protein-IL effects from a statistical mechanics perspective. The value of the preferential binding coefficient determines the strength of the ion influence and indicates a shift of the chemical equilibrium either to the native or the denatured state of the protein. We highlight the role of water in order to explain the self-association behavior of the IL species and discuss recent experimental and simulation results in the light of the observed binding effects.
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Affiliation(s)
- Jens Smiatek
- Institute for Computational Physics, University of Stuttgart, Allmandring 3, D-70569 Stuttgart, Germany
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215
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da Costa VCP, Annunziata O. Formation of Dendrimer Nanoassemblies by Oligomerization-Induced Liquid-Liquid Phase Separation. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2017; 33:5482-5490. [PMID: 28460527 DOI: 10.1021/acs.langmuir.7b00911] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
Dendrimers are hyperbranched macromolecules with applications in host-guest chemistry, self-assembly, nanocatalysis, and nanomedicine. We show that dendrimer-based globular nanoparticles are formed by using dendrimer oligomerization to isothermally induce liquid-liquid phase separation (LLPS). We first determined that LLPS of aqueous mixtures of the fourth-generation amino-functionalized poly(amido amine) dendrimer is observed by lowering temperature in the presence of sodium sulfate. In relation to LLPS, we experimentally characterized the effect of salt and dendrimer concentrations on the LLPS temperature and salt-dendrimer isothermal partitioning. Our results were theoretically examined using a two-parameter thermodynamic model. We then showed that the addition of a small amount of glutaraldehyde, which leads to the formation of soluble dendrimer oligomers by chemical cross-linking, increases the LLPS temperature. This implies that a dendrimer aqueous mixture, which is initially homogeneous at room temperature and exhibits LLPS only at relatively low temperatures, can exhibit LLPS at room temperature due to dendrimer oligomerization. The high dendrimer concentration inside the nanodroplets, produced from LLPS, accelerates dendrimer cross-linking, thereby yielding stable globular nanoparticles. These nanomaterials retain the host-guest properties of the initial dendrimers, indicating potential applications as nanocatalysts, extracting agents and drug carriers. Our work provides the basis for a new approach for obtaining dendrimer-based nanoassemblies by employing low-generation dendrimers as building blocks.
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Affiliation(s)
- Viviana C P da Costa
- Department of Chemistry & Biochemistry, Texas Christian University , Fort Worth, Texas 76129, United States
| | - Onofrio Annunziata
- Department of Chemistry & Biochemistry, Texas Christian University , Fort Worth, Texas 76129, United States
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216
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Delgado JD, Schlenoff JB. Static and Dynamic Solution Behavior of a Polyzwitterion Using a Hofmeister Salt Series. Macromolecules 2017. [DOI: 10.1021/acs.macromol.7b00525] [Citation(s) in RCA: 65] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Affiliation(s)
- Jose D. Delgado
- Department of Chemistry and
Biochemistry, Florida State University, Tallahassee, Florida 32306, United States
| | - Joseph B. Schlenoff
- Department of Chemistry and
Biochemistry, Florida State University, Tallahassee, Florida 32306, United States
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217
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Cummings CF, Pedchenko V, Brown KL, Colon S, Rafi M, Jones-Paris C, Pokydeshava E, Liu M, Pastor-Pareja JC, Stothers C, Ero-Tolliver IA, McCall AS, Vanacore R, Bhave G, Santoro S, Blackwell TS, Zent R, Pozzi A, Hudson BG. Extracellular chloride signals collagen IV network assembly during basement membrane formation. J Cell Biol 2017; 213:479-94. [PMID: 27216258 PMCID: PMC4878091 DOI: 10.1083/jcb.201510065] [Citation(s) in RCA: 45] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2015] [Accepted: 04/29/2016] [Indexed: 01/07/2023] Open
Abstract
Basement membranes are defining features of the cellular microenvironment; however, little is known regarding their assembly outside cells. We report that extracellular Cl(-) ions signal the assembly of collagen IV networks outside cells by triggering a conformational switch within collagen IV noncollagenous 1 (NC1) domains. Depletion of Cl(-) in cell culture perturbed collagen IV networks, disrupted matrix architecture, and repositioned basement membrane proteins. Phylogenetic evidence indicates this conformational switch is a fundamental mechanism of collagen IV network assembly throughout Metazoa. Using recombinant triple helical protomers, we prove that NC1 domains direct both protomer and network assembly and show in Drosophila that NC1 architecture is critical for incorporation into basement membranes. These discoveries provide an atomic-level understanding of the dynamic interactions between extracellular Cl(-) and collagen IV assembly outside cells, a critical step in the assembly and organization of basement membranes that enable tissue architecture and function. Moreover, this provides a mechanistic framework for understanding the molecular pathobiology of NC1 domains.
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Affiliation(s)
- Christopher F Cummings
- Department of Biochemistry, Vanderbilt University Medical Center, Nashville, TN 37232 Department of Medicine, Division of Nephrology and Hypertension, Vanderbilt University Medical Center, Nashville, TN 37232 Center for Matrix Biology, Vanderbilt University Medical Center, Nashville, TN 37232
| | - Vadim Pedchenko
- Department of Medicine, Division of Nephrology and Hypertension, Vanderbilt University Medical Center, Nashville, TN 37232 Center for Matrix Biology, Vanderbilt University Medical Center, Nashville, TN 37232
| | - Kyle L Brown
- Department of Medicine, Division of Nephrology and Hypertension, Vanderbilt University Medical Center, Nashville, TN 37232 Center for Matrix Biology, Vanderbilt University Medical Center, Nashville, TN 37232 Center for Structural Biology, Vanderbilt University Medical Center, Nashville, TN 37232
| | - Selene Colon
- Department of Medicine, Division of Nephrology and Hypertension, Vanderbilt University Medical Center, Nashville, TN 37232 Center for Matrix Biology, Vanderbilt University Medical Center, Nashville, TN 37232 Aspirnaut Program, Vanderbilt University Medical Center, Nashville, TN 37232
| | - Mohamed Rafi
- Department of Medicine, Division of Nephrology and Hypertension, Vanderbilt University Medical Center, Nashville, TN 37232 Center for Matrix Biology, Vanderbilt University Medical Center, Nashville, TN 37232
| | - Celestial Jones-Paris
- Aspirnaut Program, Vanderbilt University Medical Center, Nashville, TN 37232 Department of Pathology, Microbiology, and Immunology, Vanderbilt University Medical Center, Nashville, TN 37232
| | - Elena Pokydeshava
- Department of Medicine, Division of Nephrology and Hypertension, Vanderbilt University Medical Center, Nashville, TN 37232 Center for Matrix Biology, Vanderbilt University Medical Center, Nashville, TN 37232
| | - Min Liu
- School of Life Sciences, Tsinghua University, Beijing 100084, China
| | | | - Cody Stothers
- Department of Biology, Vanderbilt University Medical Center, Nashville, TN 37232 Aspirnaut Program, Vanderbilt University Medical Center, Nashville, TN 37232
| | - Isi A Ero-Tolliver
- Department of Medicine, Division of Nephrology and Hypertension, Vanderbilt University Medical Center, Nashville, TN 37232 Center for Matrix Biology, Vanderbilt University Medical Center, Nashville, TN 37232 Aspirnaut Program, Vanderbilt University Medical Center, Nashville, TN 37232
| | - A Scott McCall
- Department of Pharmacology, Vanderbilt University Medical Center, Nashville, TN 37232
| | - Roberto Vanacore
- Department of Medicine, Division of Nephrology and Hypertension, Vanderbilt University Medical Center, Nashville, TN 37232 Center for Matrix Biology, Vanderbilt University Medical Center, Nashville, TN 37232
| | - Gautam Bhave
- Department of Medicine, Division of Nephrology and Hypertension, Vanderbilt University Medical Center, Nashville, TN 37232 Center for Matrix Biology, Vanderbilt University Medical Center, Nashville, TN 37232
| | - Samuel Santoro
- Department of Pathology, Microbiology, and Immunology, Vanderbilt University Medical Center, Nashville, TN 37232
| | - Timothy S Blackwell
- Department of Medicine, Division of Allergy, Pulmonary, and Critical Care Medicine, Vanderbilt University Medical Center, Nashville, TN 37232
| | - Roy Zent
- Department of Medicine, Division of Nephrology and Hypertension, Vanderbilt University Medical Center, Nashville, TN 37232 Center for Matrix Biology, Vanderbilt University Medical Center, Nashville, TN 37232 Department of Cell and Developmental Biology, Vanderbilt University Medical Center, Nashville, TN 37232 Department of Cancer Biology, Vanderbilt University Medical Center, Nashville, TN 37232
| | - Ambra Pozzi
- Department of Medicine, Division of Nephrology and Hypertension, Vanderbilt University Medical Center, Nashville, TN 37232 Center for Matrix Biology, Vanderbilt University Medical Center, Nashville, TN 37232 Department of Cancer Biology, Vanderbilt University Medical Center, Nashville, TN 37232 Department of Molecular Physiology and Biophysics, Vanderbilt University Medical Center, Nashville, TN 37232
| | - Billy G Hudson
- Department of Biochemistry, Vanderbilt University Medical Center, Nashville, TN 37232 Department of Medicine, Division of Nephrology and Hypertension, Vanderbilt University Medical Center, Nashville, TN 37232 Center for Matrix Biology, Vanderbilt University Medical Center, Nashville, TN 37232 Aspirnaut Program, Vanderbilt University Medical Center, Nashville, TN 37232 Department of Pathology, Microbiology, and Immunology, Vanderbilt University Medical Center, Nashville, TN 37232 Department of Cell and Developmental Biology, Vanderbilt University Medical Center, Nashville, TN 37232 Vanderbilt Ingram Cancer Center, Vanderbilt University Medical Center, Nashville, TN 37232 Vanderbilt Institute of Chemical Biology, Vanderbilt University Medical Center, Nashville, TN 37232
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218
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Zajforoushan Moghaddam S, Thormann E. Hofmeister Effect on PNIPAM in Bulk and at an Interface: Surface Partitioning of Weakly Hydrated Anions. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2017; 33:4806-4815. [PMID: 28448149 DOI: 10.1021/acs.langmuir.7b00953] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/14/2023]
Abstract
The effect of sodium fluoride, sodium trichloroacetate, and sodium thiocyanate on the stability and conformation of poly(N-isopropylacrylamide), in bulk solution and at the gold-aqueous interface, is investigated by differential scanning calorimetry, dynamic light scattering, quartz crystal microbalance, and atomic force microscopy. The results indicate a surface partitioning of the weakly hydrated anions, i.e., thiocyanate and trichloroacetate, and the findings are discussed in terms of anion-induced electrostatic stabilization. Although attractive polymer-ion interactions are suggested for thiocyanate and trichloroacetate, a salting-out effect is found for sodium trichloroacetate. This apparent contradiction is explained by a combination of previously suggested mechanisms for the salting-out effect by weakly hydrated anions.
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Affiliation(s)
| | - Esben Thormann
- Department of Chemistry, Technical University of Denmark , 2800 Kgs. Lyngby, Denmark
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219
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Abstract
UV/vis absorption titrations have been used to investigate the formation of H-bonded complexes between anionic H-bond acceptors (HBAs) and neutral H-bond donors (HBDs) in organic solvents. Complexes formed by three different HBDs with 15 different anions were studied in chloroform and in acetonitrile. The data were used to determine self-consistent HBA parameters (β) for chloride, bromide, iodide, phosphate diester, acetate, benzoate, perrhenate, nitrate, triflimide, perchlorate, hexafluorophosphate, hydrogen sulfate, methyl sulfonate, triflate, and perfluorobutyl sulfonate. The results demonstrate the transferability of H-bond parameters for anions between different solvents and different HBD partners, allowing reliable prediction of anion recognition properties in other scenarios. Carboxylates are the strongest HBAs studied, with β parameters (≈ 15) that are significantly higher than those of neutral organic HBAs, and the non-coordinating anion hexafluorophosphate is the weakest acceptor, with a β parameter comparable to that of pyridine. The effects of ion pairing with the counter-cation were found to be negligible, provided small polar cations were avoided in the less polar solvent (chloroform). There is no correlation between the H-bonding properties of the anions and the pKa values of the conjugate acids.
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Affiliation(s)
- Sarah J Pike
- Department of Chemistry, University of Cambridge , Lensfield Road, Cambridge CB2 1EW, U.K
| | | | - Christopher A Hunter
- Department of Chemistry, University of Cambridge , Lensfield Road, Cambridge CB2 1EW, U.K
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220
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Wu S, Zhu C, He Z, Xue H, Fan Q, Song Y, Francisco JS, Zeng XC, Wang J. Ion-specific ice recrystallization provides a facile approach for the fabrication of porous materials. Nat Commun 2017; 8:15154. [PMID: 28462937 PMCID: PMC5418576 DOI: 10.1038/ncomms15154] [Citation(s) in RCA: 55] [Impact Index Per Article: 7.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2016] [Accepted: 02/27/2017] [Indexed: 01/24/2023] Open
Abstract
Ice recrystallization is of great importance to both fundamental research and practical applications, however understanding and controlling ice recrystallization processes remains challenging. Here, we report the discovery of an ion-specific effect on ice recrystallization. By simply changing the initial type and concentration of ions in an aqueous solution, the size of ice grains after recrystallization can be tuned from 27.4±4.1 to 277.5±30.9 μm. Molecular dynamics simulations show that the ability of the ion to be incorporated into the ice phase plays a key role in the ultimate size of the ice grains after recrystallization. Moreover, by using recrystallized ice crystals as templates, 2D and 3D porous networks with tuneable pore sizes could be prepared from various materials, for example, NaBr, collagen, quantum dots, silver and polystyrene colloids. These porous materials are suitable for a wide range of applications, for example, in organic electronics, catalysis and bioengineering.
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Affiliation(s)
- Shuwang Wu
- Key Laboratory of Green Printing, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
- School of Chemistry and Chemical Engineering, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Chongqin Zhu
- Department of Chemistry, University of Nebraska-Lincoln, Lincoln, Nebraska 68588, USA
- Beijing Advanced Innovation Center for Soft Matter Science and Engineering, Beijing University of Chemical Technology, Beijing 100029, China
| | - Zhiyuan He
- Key Laboratory of Green Printing, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
- School of Chemistry and Chemical Engineering, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Han Xue
- Key Laboratory of Green Printing, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
- School of Chemistry and Chemical Engineering, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Qingrui Fan
- Key Laboratory of Green Printing, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
- School of Chemistry and Chemical Engineering, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Yanlin Song
- Key Laboratory of Green Printing, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
- School of Chemistry and Chemical Engineering, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Joseph S. Francisco
- Department of Chemistry, University of Nebraska-Lincoln, Lincoln, Nebraska 68588, USA
| | - Xiao Cheng Zeng
- Department of Chemistry, University of Nebraska-Lincoln, Lincoln, Nebraska 68588, USA
- Beijing Advanced Innovation Center for Soft Matter Science and Engineering, Beijing University of Chemical Technology, Beijing 100029, China
| | - Jianjun Wang
- Key Laboratory of Green Printing, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
- School of Chemistry and Chemical Engineering, University of Chinese Academy of Sciences, Beijing 100049, China
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221
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Leontidis E. Investigations of the Hofmeister series and other specific ion effects using lipid model systems. Adv Colloid Interface Sci 2017; 243:8-22. [PMID: 28395857 DOI: 10.1016/j.cis.2017.04.001] [Citation(s) in RCA: 36] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2017] [Accepted: 04/02/2017] [Indexed: 11/28/2022]
Abstract
From the ion point-of-view specific ion effects (SIE) arise as an interplay of ionic size and shape and charge distribution. However in aqueous systems SIE invariably involve water, and at surfaces they involve both interacting surface groups and local fields emanating from the surface. In this review we highlight the fundamental importance of ionic size and hydration on SIE, properties which encompass all types of interacting forces and ion-pairing phenomena and make the Hofmeister or lyotropic series of ions pertinent to a broad range of systems and phenomena. On the other hand ionic hydrophobicity and complexation capacity also determine ionic behavior in a variety of contexts. Over the years we have carried out carefully designed experiments on a few selected soft matter model systems, most involving zwitterionic phospholipids, to assess the importance of fundamental ionic and interfacial properties on ion specific effects. By tuning down direct Coulomb interactions, working with different interfacial geometries, and carefully tuning ion-lipid headgroup interactions it is possible to assess the importance of different parameters contributing to ion specific behavior. We argue that the majority of specific ion effects involving relatively simple soft matter systems can be at least qualitatively understood and demystified.
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222
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Balos V, Bonn M, Hunger J. Anionic and cationic Hofmeister effects are non-additive for guanidinium salts. Phys Chem Chem Phys 2017; 19:9724-9728. [PMID: 28361132 DOI: 10.1039/c7cp00790f] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
To understand specific ion effects on a molecular level we explore the effect of salts on the rotational mobility of a model amide using dielectric spectroscopy. Based on our previous studies on the effect of strong denaturing anions or cations, here we study the additivity of the anionic and cationic effect. Using salts consisting of denaturing spherical anions and spherical cations we find such salts to affect the amide according to what one expects based on the additive activity of the individual ions. The guanidinium (Gdm+) cation appears to be a notable exception, as our results suggest that GdmI (and accordingly GdmSCN) is less efficient in hindering the rotation of the amide than KI or GdmCl.
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Affiliation(s)
- V Balos
- Max Planck Institute for Polymer Research, Ackermannweg 10, 55128 Mainz, Germany.
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223
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Licari G, Cwiklik L, Jungwirth P, Vauthey E. Exploring Fluorescent Dyes at Biomimetic Interfaces with Second Harmonic Generation and Molecular Dynamics. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2017; 33:3373-3383. [PMID: 28314372 DOI: 10.1021/acs.langmuir.7b00403] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
The adsorption of a DNA fluorescent probe belonging to the thiazole orange family at the dodecane/water and dodecane/phospholipid/water interfaces has been investigated using a combination of surface second harmonic generation (SSHG) and all-atomistic molecular dynamics (MD) simulations. Both approaches point to a high affinity of the cationic dye for the dodecane/water interface with a Gibbs free energy of adsorption on the order of -45 kJ/mol. Similar affinity was observed with a monolayer of negatively charged DPPG (1,2-dipalmitoyl-sn-glycero-3-phospho-rac-(1-glycerol)) lipids. On the other hand, no significant adsorption could be found with the zwitterionic DPPC (1,2-dipalmitoyl-sn-glycero-3-phosphocholine) lipids. This was rationalized in terms of Coulombic interactions between the monolayer surface and the cationic dye. The similar affinity for the interface with and without DPPG, despite the favorable Coulombic attraction in the latter case, could be explained after investigating the interfacial orientation of the dye. In the absence of a monolayer, the dye adsorbs with its molecular plane almost flat at the interface, whereas in the presence of DPPG it has to intercalate into the monolayer and adopt a significantly different orientation to benefit from the electrostatic stabilization.
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Affiliation(s)
- Giuseppe Licari
- Department of Physical Chemistry, University of Geneva , 30 quai Ernest-Ansermet, CH-1211 Geneva 4, Switzerland
| | - Lukasz Cwiklik
- J. Heyrovský Institute of Physical Chemistry, Czech Academy of Sciences , Dolejškova 2155/3, 182 23 Prague 8, Czech Republic
| | - Pavel Jungwirth
- Institute of Organic Chemistry and Biochemistry, Czech Academy of Sciences , Flemingovo nam. 2, 16610 Prague 6, Czech Republic
| | - Eric Vauthey
- Department of Physical Chemistry, University of Geneva , 30 quai Ernest-Ansermet, CH-1211 Geneva 4, Switzerland
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224
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Mondal JA, Namboodiri V, Mathi P, Singh AK. Alkyl Chain Length Dependent Structural and Orientational Transformations of Water at Alcohol-Water Interfaces and Its Relevance to Atmospheric Aerosols. J Phys Chem Lett 2017; 8:1637-1644. [PMID: 28333468 DOI: 10.1021/acs.jpclett.7b00324] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
Although the hydrophobic size of an amphiphile plays a key role in various chemical, biological, and atmospheric processes, its effect at macroscopic aqueous interfaces (e.g., air-water, oil-water, cell membrane-water, etc.), which are ubiquitous in nature, is not well understood. Here we report the hydrophobic alkyl chain length dependent structural and orientational transformations of water at alcohol (CnH2n+1OH, n = 1-12)-water interfaces using interface-selective heterodyne-detected vibrational sum frequency generation (HD-VSFG) and Raman multivariate curve resolution (Raman-MCR) spectroscopic techniques. The HD-VSFG results reveal that short-chain alcohols (CnH2n+1OH, n < 4, i.e., up to 1-propanol) do not affect the structure (H-bonding) and orientation of water at the air-water interface; the OH stretch band maximum appears at ∼3470 cm-1, and the water H atoms are pointed toward the bulk water, that is, "H-down" oriented. In contrast, long-chain alcohols (CnH2n+1OH, n > 4, i.e., beyond 1-butanol) make the interfacial water more strongly H-bonded and reversely orientated; the OH stretch band maximum appears at ∼3200 cm-1, and the H atoms are pointed away from the bulk water, that is, "H-up" oriented. Interestingly, for the alcohol of intermediate chain length (CnH2n+1OH, n = 4, i.e, 1-butanol), the interface is quite unstable even after hours of its formation and the time-averaged result is qualitatively similar to that of the long-chain alcohols, indicating a structural/orientational crossover of interfacial water at the 1-butanol-water interface. pH-dependent HD-VSFG measurements (with H2O as well as isotopically diluted water, HOD) suggest that the structural/orientational transformation of water at the long-chain alcohol-water interface is associated with the adsorption of OH- anion at the interface. Vibrational mapping of the water structure in the hydration shell of OH- anion (obtained by Raman-MCR spectroscopy of NaOH in HOD) clearly shows that the water becomes strongly H-bonded (OH stretch max. ≈ 3200 cm-1) while hydrating the OH- anion. Altogether, it is conceivable that alcohols of different hydrophobic chain lengths that are present in the troposphere will differently affect the interfacial electrostatics and associated chemical processes of aerosol droplets, which are critical for cloud formation, global radiation budget, and climate change.
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Affiliation(s)
- Jahur A Mondal
- Radiation & Photochemistry Division, Bhabha Atomic Research Centre, HBNI , Trombay, Mumbai 400085, India
| | - V Namboodiri
- Radiation & Photochemistry Division, Bhabha Atomic Research Centre, HBNI , Trombay, Mumbai 400085, India
| | - P Mathi
- Radiation & Photochemistry Division, Bhabha Atomic Research Centre, HBNI , Trombay, Mumbai 400085, India
| | - Ajay K Singh
- Radiation & Photochemistry Division, Bhabha Atomic Research Centre, HBNI , Trombay, Mumbai 400085, India
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225
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Konnova TA, Singer CM, Nesmelova IV. NMR solution structure of the RED subdomain of the Sleeping Beauty transposase. Protein Sci 2017; 26:1171-1181. [PMID: 28345263 DOI: 10.1002/pro.3167] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2017] [Accepted: 03/22/2017] [Indexed: 12/22/2022]
Abstract
DNA transposons can be employed for stable gene transfer in vertebrates. The Sleeping Beauty (SB) DNA transposon has been recently adapted for human application and is being evaluated in clinical trials, however its molecular mechanism is not clear. SB transposition is catalyzed by the transposase enzyme, which is a multi-domain protein containing the catalytic and the DNA-binding domains. The DNA-binding domain of the SB transposase contains two structurally independent subdomains, PAI and RED. Recently, the structures of the catalytic domain and the PAI subdomain have been determined, however no structural information on the RED subdomain and its interactions with DNA has been available. Here, we used NMR spectroscopy to determine the solution structure of the RED subdomain and characterize its interactions with the transposon DNA.
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Affiliation(s)
- Tatiana A Konnova
- Department of Physics and Optical Science, University of North Carolina, Charlotte, North Carolina, 28223
| | - Christopher M Singer
- Department of Physics and Optical Science, University of North Carolina, Charlotte, North Carolina, 28223
| | - Irina V Nesmelova
- Department of Physics and Optical Science, University of North Carolina, Charlotte, North Carolina, 28223.,Center for Biomedical Engineering and Science, University of North Carolina, Charlotte, North Carolina, 28223
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226
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Garajová K, Balogová A, Dušeková E, Sedláková D, Sedlák E, Varhač R. Correlation of lysozyme activity and stability in the presence of Hofmeister series anions. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS 2017; 1865:281-288. [DOI: 10.1016/j.bbapap.2016.11.016] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/22/2016] [Revised: 11/01/2016] [Accepted: 11/28/2016] [Indexed: 01/01/2023]
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227
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Murdoch TJ, Humphreys BA, Willott JD, Prescott SW, Nelson A, Webber GB, Wanless EJ. Enhanced specific ion effects in ethylene glycol-based thermoresponsive polymer brushes. J Colloid Interface Sci 2017; 490:869-878. [DOI: 10.1016/j.jcis.2016.11.044] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2016] [Revised: 11/14/2016] [Accepted: 11/14/2016] [Indexed: 12/26/2022]
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228
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Specific Ion Effects of Salt Solutions on Colloidal Properties of Octadecylamine Hydrochloride. J SURFACTANTS DETERG 2017. [DOI: 10.1007/s11743-016-1923-7] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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229
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Fang Y, Giesecke M, Furó I. Complexing Cations by Poly(ethylene oxide): Binding Site and Binding Mode. J Phys Chem B 2017; 121:2179-2188. [PMID: 28198620 DOI: 10.1021/acs.jpcb.6b12381] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
Abstract
The binding of K+ and Ba2+ cations to short poly(ethylene oxide) (PEO) chains with ca. 4-25 monomeric units in methanol was studied by determining the effective charge of the polymer through a combination of electrophoretic NMR and diffusion NMR experiments. These cations were previously found to bind to long PEO chains in a similar strong manner. In addition, 1H chemical shift and longitudinal spin relaxation rate changes upon binding were quantified. For both systems, binding was stronger for the short chains than that for the longer chains, which is attributed mainly to interactions between bound ions. For K+ ions, the equilibrium binding constant of a cation to a binding site was measured. For both cations, the binding site was estimated to consist of ca. six monomeric units that coordinated with the respective ions. For the systems with barium, a significant fraction of the bound ions are (BaAnion)+ ion pairs. This leads to a strong anion effect in the effective charge of the oligomers acquired upon barium ion binding. For K+, the coordinating oligomer segment remains rather mobile and individual oligomers exchange rapidly (≪s) between their free and ion-complexing states. In contrast, segmental dynamics slows significantly for the oligomer section that coordinates with the barium species, and for individual oligomers, binding and nonbinding sections do not exchange on the time scale of seconds. Hence, oligomers also exchange slowly (>s) between their free and barium complexing states.
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Affiliation(s)
- Yuan Fang
- Division of Applied Physical Chemistry, Department of Chemistry, KTH Royal Institute of Technology , SE-10044 Stockholm, Sweden
| | - Marianne Giesecke
- Division of Applied Physical Chemistry, Department of Chemistry, KTH Royal Institute of Technology , SE-10044 Stockholm, Sweden
| | - István Furó
- Division of Applied Physical Chemistry, Department of Chemistry, KTH Royal Institute of Technology , SE-10044 Stockholm, Sweden
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230
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Susa AC, Xia Z, Williams ER. Small Emitter Tips for Native Mass Spectrometry of Proteins and Protein Complexes from Nonvolatile Buffers That Mimic the Intracellular Environment. Anal Chem 2017; 89:3116-3122. [DOI: 10.1021/acs.analchem.6b04897] [Citation(s) in RCA: 97] [Impact Index Per Article: 13.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Affiliation(s)
- Anna C. Susa
- Department of Chemistry, University of California, Berkeley, California 94720-1460, United States
| | - Zijie Xia
- Department of Chemistry, University of California, Berkeley, California 94720-1460, United States
| | - Evan R. Williams
- Department of Chemistry, University of California, Berkeley, California 94720-1460, United States
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231
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Johnson NO, Light TP, MacDonald G, Zhang Y. Anion–Caffeine Interactions Studied by 13C and 1H NMR and ATR–FTIR Spectroscopy. J Phys Chem B 2017; 121:1649-1659. [DOI: 10.1021/acs.jpcb.6b12150] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Affiliation(s)
- Nicolas O. Johnson
- Department of Chemistry and
Biochemistry, James Madison University, Harrisonburg, Virginia 22807, United States
| | - Taylor P. Light
- Department of Chemistry and
Biochemistry, James Madison University, Harrisonburg, Virginia 22807, United States
| | - Gina MacDonald
- Department of Chemistry and
Biochemistry, James Madison University, Harrisonburg, Virginia 22807, United States
| | - Yanjie Zhang
- Department of Chemistry and
Biochemistry, James Madison University, Harrisonburg, Virginia 22807, United States
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232
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Do guanidinium and tetrapropylammonium ions specifically interact with aromatic amino acid side chains? Proc Natl Acad Sci U S A 2017; 114:1003-1008. [PMID: 28096375 DOI: 10.1073/pnas.1618071114] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023] Open
Abstract
Many ions are known to affect the activity, stability, and structural integrity of proteins. Although this effect can be generally attributed to ion-induced changes in forces that govern protein folding, delineating the underlying mechanism of action still remains challenging because it requires assessment of all relevant interactions, such as ion-protein, ion-water, and ion-ion interactions. Herein, we use two unnatural aromatic amino acids and several spectroscopic techniques to examine whether guanidinium chloride, one of the most commonly used protein denaturants, and tetrapropylammonium chloride can specifically interact with aromatic side chains. Our results show that tetrapropylammonium, but not guanidinium, can preferentially accumulate around aromatic residues and that tetrapropylammonium undergoes a transition at ∼1.3 M to form aggregates. We find that similar to ionic micelles, on one hand, such aggregates can disrupt native hydrophobic interactions, and on the other hand, they can promote α-helix formation in certain peptides.
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233
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Bowron DT, Edler KJ. Decyltrimethylammonium Bromide Micelles in Acidic Solutions: Counterion Binding, Water Structuring, and Micelle Shape. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2017; 33:262-271. [PMID: 27936323 DOI: 10.1021/acs.langmuir.6b03880] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
Wide-angle neutron scattering experiments combined with empirical potential structural refinement modeling have been used to study the detailed structure of decyltrimethylammonium bromide micelles in the presence of acid solutions of HCl or HBr. These experiments demonstrate considerable variation in micelle structure and water structuring between micelles in the two acid solutions and in comparison with the same micelles in pure water. In the presence of the acids, the micelles are smaller; however, in the presence of HCl the micelles are more loosely structured and disordered while in the presence of HBr the micelles are more compact and closer to spherical. Bromide ions bind strongly to the micelle surface in the HBr solution, while in HCl solutions, ion binding to the micelle is similar to that found in pure water. The hydration numbers of the anions and extent of counterion binding follow the predictions of the Hofmeister series for these species.
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Affiliation(s)
- Daniel T Bowron
- ISIS Pulsed Neutron and Muon Source, Science and Technology Facilities Council Rutherford Appleton Laboratory, Harwell Oxford , Didcot OX11 0QX, U.K
| | - Karen J Edler
- Department of Chemistry, University of Bath , Claverton Down, Bath BA2 7AY, U.K
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234
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Nardi M, D'Acunzo F, Clemente M, Proietti G, Gentili P. A first study on copolymers of a methacrylate containing the 2-(hydroxyimino)aldehyde group and OEGMA. RAFT polymerization and assessment of thermal and photoresponsive polymer behavior. Polym Chem 2017. [DOI: 10.1039/c7py00975e] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
RAFT copolymerization of 4-[(hydroxyimino)aldehyde]butyl methacrylate with OEGMA475 and first assessment of photoisomerization and thermal behavior of the copolymers in solution.
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Affiliation(s)
- Martina Nardi
- Dipartimento di Chimica
- Università degli Studi “La Sapienza” P.le A. Moro 5
- 00185 Rome
- Italy
- CNR
| | - Francesca D'Acunzo
- CNR
- Istituto di Metodologie Chimiche
- Sezione Meccanismi di Reazione c/o Dipartimento di Chimica
- Università degli Studi “La Sapienza” P.le A. Moro 5
- 00185 Roma
| | - Mariangela Clemente
- Dipartimento di Chimica
- Università degli Studi “La Sapienza” P.le A. Moro 5
- 00185 Rome
- Italy
| | - Giampiero Proietti
- Dipartimento di Chimica
- Università degli Studi “La Sapienza” P.le A. Moro 5
- 00185 Rome
- Italy
| | - Patrizia Gentili
- Dipartimento di Chimica
- Università degli Studi “La Sapienza” P.le A. Moro 5
- 00185 Rome
- Italy
- CNR
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235
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Nayar D, Folberth A, van der Vegt NFA. Molecular origin of urea driven hydrophobic polymer collapse and unfolding depending on side chain chemistry. Phys Chem Chem Phys 2017; 19:18156-18161. [DOI: 10.1039/c7cp01743j] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Urea ambivalence: molecular simulations show that collapse and unfolding of aqueous polymers occur in response to urea screening of nonpolar molecular surfaces.
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Affiliation(s)
- Divya Nayar
- Eduard-Zintl-Institut für Anorganische und Physikalische Chemie
- Center of Smart Interfaces
- Technische Universität Darmstadt
- Darmstadt
- Germany
| | - Angelina Folberth
- Eduard-Zintl-Institut für Anorganische und Physikalische Chemie
- Center of Smart Interfaces
- Technische Universität Darmstadt
- Darmstadt
- Germany
| | - Nico F. A. van der Vegt
- Eduard-Zintl-Institut für Anorganische und Physikalische Chemie
- Center of Smart Interfaces
- Technische Universität Darmstadt
- Darmstadt
- Germany
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236
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Wei Q, Zhou D, Bian H. Negligible cation effect on the vibrational relaxation dynamics of water molecules in NaClO4 and LiClO4 aqueous electrolyte solutions. RSC Adv 2017. [DOI: 10.1039/c7ra08840j] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Negligible cation effects on the vibrational relaxation dynamics of water molecules in NaClO4 and LiClO4 aqueous solutions.
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Affiliation(s)
- Qianshun Wei
- Key Laboratory of Applied Surface and Colloid Chemistry of Ministry of Education
- School of Chemistry and Chemical Engineering
- Shaanxi Normal University
- Xi'an
- China
| | - Dexia Zhou
- Key Laboratory of Applied Surface and Colloid Chemistry of Ministry of Education
- School of Chemistry and Chemical Engineering
- Shaanxi Normal University
- Xi'an
- China
| | - Hongtao Bian
- Key Laboratory of Applied Surface and Colloid Chemistry of Ministry of Education
- School of Chemistry and Chemical Engineering
- Shaanxi Normal University
- Xi'an
- China
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237
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Fedotova MV, Kruchinin SE, Chuev GN. Hydration structure of osmolyte TMAO: concentration/pressure-induced response. NEW J CHEM 2017. [DOI: 10.1039/c6nj03296f] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The effect of solute concentration/pressure on the TMAO hydration structure was studied to understand its protective action under abiotic stressors.
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Affiliation(s)
- Marina V. Fedotova
- G.A. Krestov Institute of Solution Chemistry
- The Russian Academy of Sciences
- Ivanovo
- Russia
| | - Sergey E. Kruchinin
- G.A. Krestov Institute of Solution Chemistry
- The Russian Academy of Sciences
- Ivanovo
- Russia
| | - Gennady N. Chuev
- Institute of Theoretical and Experimental Biophysics
- The Russian Academy of Sciences
- Pushchino
- Russia
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238
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Chen Y, Okur HI, Liang C, Roke S. Orientational ordering of water in extended hydration shells of cations is ion-specific and is correlated directly with viscosity and hydration free energy. Phys Chem Chem Phys 2017; 19:24678-24688. [DOI: 10.1039/c7cp03395h] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Specific ion effects in aqueous solutions are investigated at the molecular, nanoscopic and macroscopic levels.
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Affiliation(s)
- Yixing Chen
- Laboratory for fundamental BioPhotonics (LBP)
- Institute of Bio-engineering (IBI), and Institute of Materials Science (IMX)
- School of Engineering (STI), and Lausanne Centre for Ultrafast Science (LACUS)
- École Polytechnique Fédérale de Lausanne (EPFL)
- Lausanne
| | - Halil I. Okur
- Laboratory for fundamental BioPhotonics (LBP)
- Institute of Bio-engineering (IBI), and Institute of Materials Science (IMX)
- School of Engineering (STI), and Lausanne Centre for Ultrafast Science (LACUS)
- École Polytechnique Fédérale de Lausanne (EPFL)
- Lausanne
| | - Chungwen Liang
- Laboratory for fundamental BioPhotonics (LBP)
- Institute of Bio-engineering (IBI), and Institute of Materials Science (IMX)
- School of Engineering (STI), and Lausanne Centre for Ultrafast Science (LACUS)
- École Polytechnique Fédérale de Lausanne (EPFL)
- Lausanne
| | - Sylvie Roke
- Laboratory for fundamental BioPhotonics (LBP)
- Institute of Bio-engineering (IBI), and Institute of Materials Science (IMX)
- School of Engineering (STI), and Lausanne Centre for Ultrafast Science (LACUS)
- École Polytechnique Fédérale de Lausanne (EPFL)
- Lausanne
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239
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Pike SJ, Hunter CA. Fluorescent and colorimetric molecular recognition probe for hydrogen bond acceptors. Org Biomol Chem 2017; 15:9603-9610. [DOI: 10.1039/c7ob02092a] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Abstract
We report on the development of a dual molecular recognition probe for hydrogen bond acceptors.
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Affiliation(s)
- Sarah J. Pike
- Department of Chemistry
- University of Cambridge
- Cambridge
- UK
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240
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Renaissance of protein crystallization and precipitation in biopharmaceuticals purification. Biotechnol Adv 2017; 35:41-50. [DOI: 10.1016/j.biotechadv.2016.11.005] [Citation(s) in RCA: 57] [Impact Index Per Article: 8.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2016] [Revised: 11/15/2016] [Accepted: 11/23/2016] [Indexed: 12/13/2022]
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241
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Rogers BA, Thompson TS, Zhang Y. Hofmeister Anion Effects on Thermodynamics of Caffeine Partitioning between Aqueous and Cyclohexane Phases. J Phys Chem B 2016; 120:12596-12603. [DOI: 10.1021/acs.jpcb.6b07760] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Affiliation(s)
- Bradley A. Rogers
- Department of Chemistry and
Biochemistry, James Madison University, Harrisonburg, Virginia 22807, United States
| | - Tye S. Thompson
- Department of Chemistry and
Biochemistry, James Madison University, Harrisonburg, Virginia 22807, United States
| | - Yanjie Zhang
- Department of Chemistry and
Biochemistry, James Madison University, Harrisonburg, Virginia 22807, United States
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242
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Srour H, Deffo Ayagou MD, Nguyen TTT, Taberlet N, Manneville S, Andraud C, Monnereau C, Leocmach M. Ion pairing controls rheological properties of "processionary" polyelectrolyte hydrogels. SOFT MATTER 2016; 12:9749-9758. [PMID: 27886321 DOI: 10.1039/c6sm02022d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
We demonstrated recently that polyelectrolytes with cationic moieties along the chain and a single anionic head are able to form physical hydrogels due to the reversible nature of the head-to-body ionic bond. Here we generate a variety of such polyelectrolytes with various cationic moieties and counterion combinations starting from a common polymeric platform. We show that the rheological properties (shear modulus, critical strain) of the final hydrogels can be modulated over three orders of magnitude depending on the cation/anion pair. Our data fit remarkably well within a scaling model involving a supramolecular head-to-tail single file between cross-links, akin to the behaviour of pine-processionary caterpillar. This model allows the quantitative measure of the amount of counterion condensation from standard rheology procedure.
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Affiliation(s)
- Hassan Srour
- Univ Lyon, Ens de Lyon, Université Claude Bernard Lyon 1, CNRS, Laboratoire de Chimie, F-69342 Lyon, France.
| | - Martien Duvall Deffo Ayagou
- Univ Lyon, Ens de Lyon, Université Claude Bernard Lyon 1, CNRS, Laboratoire de Chimie, F-69342 Lyon, France.
| | - Thi Thanh-Tam Nguyen
- Univ Lyon, Ens de Lyon, Université Claude Bernard Lyon 1, CNRS, Laboratoire de Chimie, F-69342 Lyon, France.
| | - Nicolas Taberlet
- Univ Lyon, Ens de Lyon, Université Claude Bernard Lyon 1, CNRS, Laboratoire de Physique, F-69342 Lyon, France
| | - Sébastien Manneville
- Univ Lyon, Ens de Lyon, Université Claude Bernard Lyon 1, CNRS, Laboratoire de Physique, F-69342 Lyon, France
| | - Chantal Andraud
- Univ Lyon, Ens de Lyon, Université Claude Bernard Lyon 1, CNRS, Laboratoire de Chimie, F-69342 Lyon, France.
| | - Cyrille Monnereau
- Univ Lyon, Ens de Lyon, Université Claude Bernard Lyon 1, CNRS, Laboratoire de Chimie, F-69342 Lyon, France.
| | - Mathieu Leocmach
- Univ Lyon, Université Claude Bernard Lyon 1, CNRS, Institut Lumière Matière, F-69622, Villeurbanne, France.
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243
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Misin M, Vainikka PA, Fedorov MV, Palmer DS. Salting-out effects by pressure-corrected 3D-RISM. J Chem Phys 2016; 145:194501. [DOI: 10.1063/1.4966973] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023] Open
Affiliation(s)
- Maksim Misin
- Department of Physics, SUPA, University of Strathclyde, 107 Rottenrow, Glasgow G4 0NG, United Kingdom
| | - Petteri A. Vainikka
- Department of Pure and Applied Chemistry, University of Strathclyde, 295 Cathedral Street, Glasgow G1 1XL, United Kingdom
| | - Maxim V. Fedorov
- Department of Physics, SUPA, University of Strathclyde, 107 Rottenrow, Glasgow G4 0NG, United Kingdom
- Skolkovo Institute of Science and Technology, 3 Nobel Street, Moscow 143026, Russian Federation
| | - David S. Palmer
- Department of Pure and Applied Chemistry, University of Strathclyde, 295 Cathedral Street, Glasgow G1 1XL, United Kingdom
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244
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Choi JH, Cho M. Ion aggregation in high salt solutions. VI. Spectral graph analysis of chaotropic ion aggregates. J Chem Phys 2016; 145:174501. [DOI: 10.1063/1.4966246] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Jun-Ho Choi
- Center for Molecular Spectroscopy and Dynamics, Institute for Basic Science, Korea University, Seoul 02841, South Korea
- Department of Chemistry, Korea University, Seoul 02841, South Korea
| | - Minhaeng Cho
- Center for Molecular Spectroscopy and Dynamics, Institute for Basic Science, Korea University, Seoul 02841, South Korea
- Department of Chemistry, Korea University, Seoul 02841, South Korea
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245
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Bye JW, Baxter NJ, Hounslow AM, Falconer R, Williamson MP. Molecular Mechanism for the Hofmeister Effect Derived from NMR and DSC Measurements on Barnase. ACS OMEGA 2016; 1:669-679. [PMID: 31457155 PMCID: PMC6640789 DOI: 10.1021/acsomega.6b00223] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/05/2016] [Accepted: 10/10/2016] [Indexed: 05/27/2023]
Abstract
The effects of sodium thiocyanate, sodium chloride, and sodium sulfate on the ribonuclease barnase were studied using differential scanning calorimetry (DSC) and NMR. Both measurements reveal specific and saturable binding at low anion concentrations (up to 250 mM), which produces localized conformational and energetic effects that are unrelated to the Hofmeister series. The binding of sulfate slows intramolecular motions, as revealed by peak broadening in 13C heteronuclear single quantum coherence spectroscopy. None of the anions shows significant binding to hydrophobic groups. Above 250 mM, the DSC results are consistent with the expected Hofmeister effects in that the chaotropic anion thiocyanate destabilizes barnase. In this higher concentration range, the anions have approximately linear effects on protein NMR chemical shifts, with no evidence for direct interaction of the anions with the protein surface. We conclude that the effects of the anions on barnase are mediated by solvent interactions. The results are not consistent with the predictions of the preferential interaction, preferential hydration, and excluded volume models commonly used to describe Hofmeister effects. Instead, they suggest that the Hofmeister anion effects on both stability and solubility of barnase are due to the way in which the protein interacts with water molecules, and in particular with water dipoles, which are more ordered around sulfate anions and less ordered around thiocyanate anions.
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Affiliation(s)
- Jordan W. Bye
- Department
of Chemical and Biological Engineering, University of Sheffield, Sir Robert Hadfield Building, Mappin Street, Sheffield S1 3JD, U.K.
| | - Nicola J. Baxter
- Department of Molecular Biology and Biotechnology, Krebs Institute
for Biomolecular Research, University of
Sheffield, Firth Court,
Western Bank, Sheffield S10 2TN, U.K.
| | - Andrea M. Hounslow
- Department of Molecular Biology and Biotechnology, Krebs Institute
for Biomolecular Research, University of
Sheffield, Firth Court,
Western Bank, Sheffield S10 2TN, U.K.
| | - Robert
J. Falconer
- Department
of Chemical and Biological Engineering, University of Sheffield, Sir Robert Hadfield Building, Mappin Street, Sheffield S1 3JD, U.K.
| | - Mike P. Williamson
- Department of Molecular Biology and Biotechnology, Krebs Institute
for Biomolecular Research, University of
Sheffield, Firth Court,
Western Bank, Sheffield S10 2TN, U.K.
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246
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Tah I, Mondal J. How Does a Hydrophobic Macromolecule Respond to a Mixed Osmolyte Environment? J Phys Chem B 2016; 120:10969-10978. [DOI: 10.1021/acs.jpcb.6b08378] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Affiliation(s)
- Indrajit Tah
- Tata Institute of Fundamental Research, Center for Interdisciplinary Sciences, 21 Brundavan Colony, Narsingi, Hyderabad, India
| | - Jagannath Mondal
- Tata Institute of Fundamental Research, Center for Interdisciplinary Sciences, 21 Brundavan Colony, Narsingi, Hyderabad, India
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247
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Chen S, Manabe Y, Minamoto N, Saiki N, Fukase K. Development of a simple assay system for protein-stabilizing efficiency based on hemoglobin protection against denaturation and measurement of the cooperative effect of mixing protein stabilizers. Biosci Biotechnol Biochem 2016; 80:1874-8. [DOI: 10.1080/09168451.2016.1189317] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
Abstract
Abstract
We have elucidated the cooperative stabilization of proteins by sugars, amino acids, and other protein-stabilizing agents using a new and simple assay system. Our system determines the protein-stabilizing ability of various compounds by measuring their ability to protect hemoglobin from denaturation. Hemoglobin denaturation was readily measured by quantitative changes in its ultraviolet–visible absorption spectrum. The efficiency of our assay was confirmed using various sugars such as trehalose and sucrose that are known to be good protein stabilizers. We have also found that mixtures of two different types of protein stabilizers resulted in a cooperative stabilizing effect on protein.
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Affiliation(s)
- Siyu Chen
- Graduate School of Science, Osaka University, Toyonaka, Japan
| | | | - Naoya Minamoto
- Graduate School of Science, Osaka University, Toyonaka, Japan
| | - Naoka Saiki
- Graduate School of Science, Osaka University, Toyonaka, Japan
| | - Koichi Fukase
- Graduate School of Science, Osaka University, Toyonaka, Japan
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248
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Dai P, Zhang C, Welborn M, Shepherd J, Zhu T, Van Voorhis T, Pentelute BL. Salt Effect Accelerates Site-Selective Cysteine Bioconjugation. ACS CENTRAL SCIENCE 2016; 2:637-646. [PMID: 27725962 PMCID: PMC5043432 DOI: 10.1021/acscentsci.6b00180] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/25/2016] [Indexed: 05/16/2023]
Abstract
Highly efficient and selective chemical reactions are desired. For small molecule chemistry, the reaction rate can be varied by changing the concentration, temperature, and solvent used. In contrast for large biomolecules, the reaction rate is difficult to modify by adjusting these variables because stringent biocompatible reaction conditions are required. Here we show that adding salts can change the rate constant over 4 orders of magnitude for an arylation bioconjugation reaction between a cysteine residue within a four-residue sequence (π-clamp) and a perfluoroaryl electrophile. Biocompatible ammonium sulfate significantly enhances the reaction rate without influencing the site-specificity of π-clamp mediated arylation, enabling the fast synthesis of two site-specific antibody-drug conjugates that selectively kill HER2-positive breast cancer cells. Computational and structure-reactivity studies indicate that salts may tune the reaction rate through modulating the interactions between the π-clamp hydrophobic side chains and the electrophile. On the basis of this understanding, the salt effect is extended to other bioconjugation chemistry, and a new regioselective alkylation reaction at π-clamp cysteine is developed.
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249
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Giesecke M, Hallberg F, Fang Y, Stilbs P, Furó I. Binding of Monovalent and Multivalent Metal Cations to Polyethylene Oxide in Methanol Probed by Electrophoretic and Diffusion NMR. J Phys Chem B 2016; 120:10358-10366. [PMID: 27622602 DOI: 10.1021/acs.jpcb.6b08923] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Complex formation in methanol between monodisperse polyethylene oxide (PEO) and a large set of cations was studied by measuring the effective charge acquired by PEO upon complexation. Quantitative data were obtained at a low ionic strength of 2 mM (for some salts, also between 0.5 and 6 mM) by a combination of diffusion nuclear magnetic resonance (NMR) and electrophoretic NMR experiments. For strongly complexing cations, the magnitude of the acquired effective charge was on the order of 1 cation per 100 monomer units. For monovalent cations, the relative strength of binding varies as Na+ < K+ ≈ Rb+ ≈ Cs+, whereas Li+ exhibited no significant binding. All polyvalent cations bind very weakly, except for Ba2+ that exhibited strong binding. Anions do not bind, as is shown by the lack of response to the chemical nature of anionic species (perchlorate, iodide, or acetate). Diffusion experiments directly show that the acetate anion with monovalent cations does not associate with PEO. Considering all cations, we find that the observed binding does not follow any Hofmeister order. Instead, binding occurs below a critical surface charge density, which indicates that the degree of complexation is defined by the solvation shell. A large solvation shell prevents the binding of most multivalent ions.
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Affiliation(s)
- Marianne Giesecke
- Division of Applied Physical Chemistry, Department of Chemistry, KTH Royal Institute of Technology , SE-10044 Stockholm, Sweden
| | - Fredrik Hallberg
- Division of Applied Physical Chemistry, Department of Chemistry, KTH Royal Institute of Technology , SE-10044 Stockholm, Sweden
| | - Yuan Fang
- Division of Applied Physical Chemistry, Department of Chemistry, KTH Royal Institute of Technology , SE-10044 Stockholm, Sweden
| | - Peter Stilbs
- Division of Applied Physical Chemistry, Department of Chemistry, KTH Royal Institute of Technology , SE-10044 Stockholm, Sweden
| | - István Furó
- Division of Applied Physical Chemistry, Department of Chemistry, KTH Royal Institute of Technology , SE-10044 Stockholm, Sweden
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250
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Zhang R, van der Vegt NFA. Study of Hydrophobic Clustering in Partially Sulfonated Polystyrene Solutions with a Systematic Coarse-Grained Model. Macromolecules 2016. [DOI: 10.1021/acs.macromol.6b01132] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Ran Zhang
- Eduard-Zintl-Institut für Anorganische und Physikalische Chemie
and Center of Smart Interfaces, Technische Universität Darmstadt, Alarich-Weiss-Straße 10, D-64287 Darmstadt, Germany
| | - Nico F. A. van der Vegt
- Eduard-Zintl-Institut für Anorganische und Physikalische Chemie
and Center of Smart Interfaces, Technische Universität Darmstadt, Alarich-Weiss-Straße 10, D-64287 Darmstadt, Germany
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