351
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Zhang Q, Shreeve JM. Energetic ionic liquids as explosives and propellant fuels: a new journey of ionic liquid chemistry. Chem Rev 2014; 114:10527-74. [PMID: 25207674 DOI: 10.1021/cr500364t] [Citation(s) in RCA: 283] [Impact Index Per Article: 25.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Affiliation(s)
- Qinghua Zhang
- Institute of Chemical Materials, China Academy of Engineering Physics (CAEP) , Mianyang 621900, China
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352
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Shao Y, Gan Z, Epifanovsky E, Gilbert AT, Wormit M, Kussmann J, Lange AW, Behn A, Deng J, Feng X, Ghosh D, Goldey M, Horn PR, Jacobson LD, Kaliman I, Khaliullin RZ, Kuś T, Landau A, Liu J, Proynov EI, Rhee YM, Richard RM, Rohrdanz MA, Steele RP, Sundstrom EJ, Woodcock HL, Zimmerman PM, Zuev D, Albrecht B, Alguire E, Austin B, Beran GJO, Bernard YA, Berquist E, Brandhorst K, Bravaya KB, Brown ST, Casanova D, Chang CM, Chen Y, Chien SH, Closser KD, Crittenden DL, Diedenhofen M, DiStasio RA, Do H, Dutoi AD, Edgar RG, Fatehi S, Fusti-Molnar L, Ghysels A, Golubeva-Zadorozhnaya A, Gomes J, Hanson-Heine MW, Harbach PH, Hauser AW, Hohenstein EG, Holden ZC, Jagau TC, Ji H, Kaduk B, Khistyaev K, Kim J, Kim J, King RA, Klunzinger P, Kosenkov D, Kowalczyk T, Krauter CM, Lao KU, Laurent AD, Lawler KV, Levchenko SV, Lin CY, Liu F, Livshits E, Lochan RC, Luenser A, Manohar P, Manzer SF, Mao SP, Mardirossian N, Marenich AV, Maurer SA, Mayhall NJ, Neuscamman E, Oana CM, Olivares-Amaya R, O’Neill DP, Parkhill JA, Perrine TM, Peverati R, Prociuk A, Rehn DR, Rosta E, Russ NJ, Sharada SM, Sharma S, Small DW, Sodt A, Stein T, Stück D, Su YC, Thom AJ, Tsuchimochi T, Vanovschi V, Vogt L, Vydrov O, Wang T, Watson MA, Wenzel J, White A, Williams CF, Yang J, Yeganeh S, Yost SR, You ZQ, Zhang IY, Zhang X, Zhao Y, Brooks BR, Chan GK, Chipman DM, Cramer CJ, Goddard WA, Gordon MS, Hehre WJ, Klamt A, Schaefer HF, Schmidt MW, Sherrill CD, Truhlar DG, Warshel A, Xu X, Aspuru-Guzik A, Baer R, Bell AT, Besley NA, Chai JD, Dreuw A, Dunietz BD, Furlani TR, Gwaltney SR, Hsu CP, Jung Y, Kong J, Lambrecht DS, Liang W, Ochsenfeld C, Rassolov VA, Slipchenko LV, Subotnik JE, Van Voorhis T, Herbert JM, Krylov AI, Gill PM, Head-Gordon M. Advances in molecular quantum chemistry contained in the Q-Chem 4 program package. Mol Phys 2014. [DOI: 10.1080/00268976.2014.952696] [Citation(s) in RCA: 1769] [Impact Index Per Article: 160.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
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353
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Sengupta A, Raghavachari K. Prediction of Accurate Thermochemistry of Medium and Large Sized Radicals Using Connectivity-Based Hierarchy (CBH). J Chem Theory Comput 2014; 10:4342-50. [DOI: 10.1021/ct500484f] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Arkajyoti Sengupta
- Department of Chemistry, Indiana University, Bloomington, Indiana 47405, United States
| | - Krishnan Raghavachari
- Department of Chemistry, Indiana University, Bloomington, Indiana 47405, United States
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354
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Sengupta A, Ramabhadran RO, Raghavachari K. Accurate and Computationally Efficient Prediction of Thermochemical Properties of Biomolecules Using the Generalized Connectivity-Based Hierarchy. J Phys Chem B 2014; 118:9631-43. [DOI: 10.1021/jp505544y] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Affiliation(s)
- Arkajyoti Sengupta
- Department of Chemistry, Indiana University, Bloomington, Indiana 47405, United States
| | | | - Krishnan Raghavachari
- Department of Chemistry, Indiana University, Bloomington, Indiana 47405, United States
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355
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Electron delocalization and relative stabilities for the favored and rare tautomers of hydroxyazines in the gas phase – A comparison with aminoazines. COMPUT THEOR CHEM 2014. [DOI: 10.1016/j.comptc.2014.04.015] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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356
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Sun J, Wu J, Song T, Hu L, Shan K, Chen G. Alternative Approach to Chemical Accuracy: A Neural Networks-Based First-Principles Method for Heat of Formation of Molecules Made of H, C, N, O, F, S, and Cl. J Phys Chem A 2014; 118:9120-31. [DOI: 10.1021/jp502096y] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Jian Sun
- Department
of Chemistry, The University of Hong Kong, Hong Kong, China
| | - Jiang Wu
- Department
of Chemistry, The University of Hong Kong, Hong Kong, China
| | - Tao Song
- Department
of Chemistry, The University of Hong Kong, Hong Kong, China
| | - LiHong Hu
- School of Computer Science and Information Technology, Northeast Normal University, Changchun, Jilin, China
| | - KaiLu Shan
- Department
of Chemistry, The University of Hong Kong, Hong Kong, China
| | - GuanHua Chen
- Department
of Chemistry, The University of Hong Kong, Hong Kong, China
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357
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Weymuth T, Couzijn EPA, Chen P, Reiher M. New Benchmark Set of Transition-Metal Coordination Reactions for the Assessment of Density Functionals. J Chem Theory Comput 2014; 10:3092-103. [DOI: 10.1021/ct500248h] [Citation(s) in RCA: 150] [Impact Index Per Article: 13.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Thomas Weymuth
- ETH Zürich, Laboratorium für Physikalische
Chemie, Vladimir-Prelog-Weg
2, CH-8093 Zürich, Switzerland
| | - Erik P. A. Couzijn
- ETH Zürich, Laboratorium für Organische
Chemie, Vladimir-Prelog-Weg
2, CH-8093 Zürich, Switzerland
| | - Peter Chen
- ETH Zürich, Laboratorium für Organische
Chemie, Vladimir-Prelog-Weg
2, CH-8093 Zürich, Switzerland
| | - Markus Reiher
- ETH Zürich, Laboratorium für Physikalische
Chemie, Vladimir-Prelog-Weg
2, CH-8093 Zürich, Switzerland
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358
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Turovtsev V, Khrapkovskii G, Shamov A, Orlov Y, Tsyshevsky R. Determination of thermodynamic parameters of C2–C3 nitroalkanes using anharmonic oscillator approximation and explicit treatment of internal rotation. COMPUT THEOR CHEM 2014. [DOI: 10.1016/j.comptc.2014.04.017] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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359
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Snitsiriwat S, Bozzelli JW. Thermochemistry, Reaction Paths, and Kinetics on thetert-Isooctane Radical Reaction with O2. J Phys Chem A 2014; 118:4631-46. [DOI: 10.1021/jp502702f] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Suarwee Snitsiriwat
- Department of Chemistry and Environmental Science, New Jersey Institute of Technology, University Heights, Newark, New Jersey 07102 United States
| | - Joseph W. Bozzelli
- Department of Chemistry and Environmental Science, New Jersey Institute of Technology, University Heights, Newark, New Jersey 07102 United States
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360
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Yang Y, van Aggelen H, Steinmann SN, Peng D, Yang W. Benchmark tests and spin adaptation for the particle-particle random phase approximation. J Chem Phys 2014; 139:174110. [PMID: 24206290 DOI: 10.1063/1.4828728] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
The particle-particle random phase approximation (pp-RPA) provides an approximation to the correlation energy in density functional theory via the adiabatic connection [H. van Aggelen, Y. Yang, and W. Yang, Phys. Rev. A 88, 030501 (2013)]. It has virtually no delocalization error nor static correlation error for single-bond systems. However, with its formal O(N(6)) scaling, the pp-RPA is computationally expensive. In this paper, we implement a spin-separated and spin-adapted pp-RPA algorithm, which reduces the computational cost by a substantial factor. We then perform benchmark tests on the G2/97 enthalpies of formation database, DBH24 reaction barrier database, and four test sets for non-bonded interactions (HB6/04, CT7/04, DI6/04, and WI9/04). For the G2/97 database, the pp-RPA gives a significantly smaller mean absolute error (8.3 kcal/mol) than the direct particle-hole RPA (ph-RPA) (22.7 kcal/mol). Furthermore, the error in the pp-RPA is nearly constant with the number of atoms in a molecule, while the error in the ph-RPA increases. For chemical reactions involving typical organic closed-shell molecules, pp- and ph-RPA both give accurate reaction energies. Similarly, both RPAs perform well for reaction barriers and nonbonded interactions. These results suggest that the pp-RPA gives reliable energies in chemical applications. The adiabatic connection formalism based on pairing matrix fluctuation is therefore expected to lead to widely applicable and accurate density functionals.
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Affiliation(s)
- Yang Yang
- Department of Chemistry, Duke University, Durham, North Carolina 27708, USA
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361
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Su NQ, Yang W, Mori-Sánchez P, Xu X. Fractional Charge Behavior and Band Gap Predictions with the XYG3 Type of Doubly Hybrid Density Functionals. J Phys Chem A 2014; 118:9201-11. [DOI: 10.1021/jp5029992] [Citation(s) in RCA: 43] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Neil Qiang Su
- Collaborative Innovation Center
of Chemistry for Energy Materials, Shanghai Key Laboratory of Molecular
Catalysis and Innovative Materials, MOE Laboratory for Computational
Physical Science, Department of Chemistry, Fudan University, Shanghai 200433, China
| | - Weitao Yang
- Department of Chemistry, Duke University, Durham, North Carolina 27708, United States
| | - Paula Mori-Sánchez
- Departamento de Quı́mica, Universidad Autónoma de Madrid, Madrid 28049, Spain
| | - Xin Xu
- Collaborative Innovation Center
of Chemistry for Energy Materials, Shanghai Key Laboratory of Molecular
Catalysis and Innovative Materials, MOE Laboratory for Computational
Physical Science, Department of Chemistry, Fudan University, Shanghai 200433, China
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362
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Su NQ, Xu X. Construction of a parameter-free doubly hybrid density functional from adiabatic connection. J Chem Phys 2014; 140:18A512. [DOI: 10.1063/1.4866457] [Citation(s) in RCA: 50] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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363
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Verma P, Bartlett RJ. Increasing the applicability of density functional theory. IV. Consequences of ionization-potential improved exchange-correlation potentials. J Chem Phys 2014; 140:18A534. [DOI: 10.1063/1.4871409] [Citation(s) in RCA: 59] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023] Open
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364
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Ranasinghe DS, Barnes EC. An efficient extrapolation to the (T)/CBS limit. J Chem Phys 2014; 140:184116. [DOI: 10.1063/1.4873136] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023] Open
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365
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Zhang Q, Yin P, Zhang J, Shreeve JM. Cyanoborohydride-Based Ionic Liquids as Green Aerospace Bipropellant Fuels. Chemistry 2014; 20:6909-14. [DOI: 10.1002/chem.201402704] [Citation(s) in RCA: 78] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2014] [Indexed: 11/10/2022]
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366
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Mavros MG, Tsuchimochi T, Kowalczyk T, McIsaac A, Wang LP, Voorhis TV. What can density functional theory tell us about artificial catalytic water splitting? Inorg Chem 2014; 53:6386-97. [PMID: 24694041 DOI: 10.1021/ic5002557] [Citation(s) in RCA: 76] [Impact Index Per Article: 6.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Abstract
Water splitting by artificial catalysts is a critical process in the production of hydrogen gas as an alternative fuel. In this paper, we examine the essential role of theoretical calculations, with particular focus on density functional theory (DFT), in understanding the water-splitting reaction on these catalysts. First, we present an overview of DFT thermochemical calculations on water-splitting catalysts, addressing how these calculations are adapted to condensed phases and room temperature. We show how DFT-derived chemical descriptors of reactivity can be surprisingly good estimators for reactive trends in water-splitting catalysts. Using this concept, we recover trends for bulk catalysts using simple model complexes for at least the first-row transition-metal oxides. Then, using the CoPi cobalt oxide catalyst as a case study, we examine the usefulness of simulation for predicting the kinetics of water splitting. We demonstrate that the appropriate treatment of solvent effects is critical for computing accurate redox potentials with DFT, which, in turn, determine the rate-limiting steps and electrochemical overpotentials. Finally, we examine the ability of DFT to predict mechanism, using ruthenium complexes as a focal point for discussion. Our discussion is intended to provide an overview of the current strengths and weaknesses of the state-of-the-art DFT methodologies for condensed-phase molecular simulation involving transition metals and also to guide future experiments and computations toward the understanding and development of novel water-splitting catalysts.
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Affiliation(s)
- Michael G Mavros
- Department of Chemistry, Massachusetts Institute of Technology , 77 Massachusetts Avenue, Cambridge, Massachusetts 02139 United States
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367
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Liu S, Lei Y, Qi X, Lan Y. Reactivity for the Diels–Alder Reaction of Cumulenes: A Distortion-Interaction Analysis along the Reaction Pathway. J Phys Chem A 2014; 118:2638-45. [DOI: 10.1021/jp411914u] [Citation(s) in RCA: 74] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Song Liu
- School
of Chemistry and Chemical Engineering, Chongqing University, Chongqing 400030, China
| | - Yu Lei
- Department
of Emergency, First Hospital, Jilin University, Changchun, China
| | - Xiaotian Qi
- School
of Chemistry and Chemical Engineering, Chongqing University, Chongqing 400030, China
| | - Yu Lan
- School
of Chemistry and Chemical Engineering, Chongqing University, Chongqing 400030, China
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368
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Pereira DH, Ducati LC, Rittner R, Custodio R. A study of the rotational barriers for some organic compounds using the G3 and G3CEP theories. J Mol Model 2014; 20:2199. [DOI: 10.1007/s00894-014-2199-3] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2013] [Accepted: 03/02/2014] [Indexed: 10/25/2022]
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369
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Berasategui M, Burgos Paci MA, Argüello GA. Properties and thermal decomposition of the hydro-fluoro-peroxide CH₃OC(O)OOC(O)F. J Phys Chem A 2014; 118:2167-75. [PMID: 24548043 DOI: 10.1021/jp407871x] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Abstract
The thermal decomposition of methyl fluoroformyl peroxycarbonate CH3OC(O)OOC(O)F was studied in the range of 30- 96 °C using FTIR spectroscopy to follow the course of the reaction in the presence of either N2, O2, or CO as bath gases. The rate constants of the homogeneous first-order process fit the Arrhenius equation k(exp) = (5.4 ± 0.2) × 10(14) exp[-(27.1 ± 0.6 kcal mol(-1)/RT)] (in units of s(-1)). A complete mechanism of decomposition is presented. An experimental O-O bond energy of 27 ± 1 kcal mol(-1) was obtained. The products observed when N2 or O2 are used as bath gases were CO2, CO, HF, and CH3OC(O)H, while in the presence of CO, CH3OC(O)F was also observed. Transition state ab initio calculations were carried out to understand the dynamics of the decomposition. Additionally, thermodynamic properties of the atmospherically relevant CH3OCO2• radical were calculated. The heat of formation, ΔH°(f 298), obtained for CH3OCO2• and CH3OC(O)OOC(O)F, were 78 ± 3 kcal mol(-1) and 191 ± 5 kcal mol(-1), respectively.
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Affiliation(s)
- Matías Berasategui
- Instituto de Investigaciones en Físico Química de Córdoba (INFIQC) CONICET-UNC, Departamento de Físico Química, Facultad de Ciencias Químicas, Universidad Nacional de Córdoba, Ciudad Universitaria , X5000HUA Córdoba, Córdoba, Argentina
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370
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Lo PK, Lau KC. High-Level ab Initio Predictions for the Ionization Energy, Electron Affinity, and Heats of Formation of Cyclopentadienyl Radical, Cation, and Anion, C5H5/C5H5+/C5H5–. J Phys Chem A 2014; 118:2498-507. [DOI: 10.1021/jp412323j] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Po-Kam Lo
- Department of Biology and
Chemistry, City University of Hong Kong, 83 Tat Chee Avenue, Kowloon, Hong Kong
| | - Kai-Chung Lau
- Department of Biology and
Chemistry, City University of Hong Kong, 83 Tat Chee Avenue, Kowloon, Hong Kong
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371
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Jungkamp TPW, Kukui A, Schindler RN. Determination of Rate Constants and Product Branching Ratios for the Reactions of CH3O2and CH3O with Cl Atoms at Room Temperature. ACTA ACUST UNITED AC 2014. [DOI: 10.1002/bbpc.199500031] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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372
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Riojas AG, Wilson AK. Solv-ccCA: Implicit Solvation and the Correlation Consistent Composite Approach for the Determination of pKa. J Chem Theory Comput 2014; 10:1500-10. [PMID: 26580366 DOI: 10.1021/ct400908z] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Direct theoretical methods are advantageous for the prediction of pKa, as relative methods rely upon the experimental values of reference acid molecules that can limit application of the method to well-characterized systems. Here, a direct route is introduced, which incorporates the SMD universal solvation model1 within the correlation consistent Composite Approach (ccCA). This Solv-ccCA methodology has been used for the prediction of theoretical pKa values for nitrogen-containing species to within a mean absolute deviation (MAD) of 1.0 pKa unit from experimental values by utilizing a thermodynamic cycle that combines gas-phase and solution-phase calculations. Several density functionals, including B3LYP, B97-1, B97-2, B98, BMK, M06, and M06-2X, were also evaluated for use with SMD and for comparison to Solv-ccCA.
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Affiliation(s)
- Amanda G Riojas
- Department of Chemistry and Center for Advanced Scientific Computing and Modeling (CASCaM), University of North Texas , Denton, Texas 76203-5017, United States
| | - Angela K Wilson
- Department of Chemistry and Center for Advanced Scientific Computing and Modeling (CASCaM), University of North Texas , Denton, Texas 76203-5017, United States
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373
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Use of an auxiliary basis set to describe the polarization in the fragment molecular orbital method. Chem Phys Lett 2014. [DOI: 10.1016/j.cplett.2014.02.029] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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374
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Souvi SMO, Sharkas K, Toulouse J. Double-hybrid density-functional theory with meta-generalized-gradient approximations. J Chem Phys 2014; 140:084107. [DOI: 10.1063/1.4865963] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023] Open
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375
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Thapa B, Schlegel HB. Molecular Dynamics of Methanol Monocation (CH3OH+) in Strong Laser Fields. J Phys Chem A 2014; 118:1769-76. [DOI: 10.1021/jp410091b] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Bishnu Thapa
- Department of Chemistry, Wayne State University, Detroit, Michigan 48202, United States
| | - H. Bernhard Schlegel
- Department of Chemistry, Wayne State University, Detroit, Michigan 48202, United States
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376
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Huang F, Jiang J, Wen M, Wang ZX. Assessing the performance of commonly used DFT functionals in studying the chemistry of frustrated Lewis pairs. JOURNAL OF THEORETICAL & COMPUTATIONAL CHEMISTRY 2014. [DOI: 10.1142/s0219633613500740] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
The benchmark study has assessed the performance of 18 density functional theory (DFT) functionals, including GGAs, hybrid-GGAs, meta-GGAs, and hybrid meta-GGAs, in predicting bonding strength, barrier height and structure for systems involving Lewis acids and bases. Three databases were built for the study, including 15 bonding enthalpies of dative bonds (DBH15), 10 reaction barriers (BH10) and 10 X-ray structures (XCS10). Wavefunction-based ab initio calculations were also carried out for comparisons. The benchmark data were computed at the CCSD(T)/BSI//MP2/BSI(BSI=aug-cc-pVTZ) level. The 6-311++G(d,p)(BSII) and 6-31G(d,p)(BSIII) basis sets were employed in DFT calculations. Generally, M06-2X/BSII and M05-2X/BSII outperform the other tested DFT methods. M05-2X/BSIII and M06-2X/BSIII are less accurate than M05-2X/BSII and M06-2X/BSII (or M05-2X/BSII//M05-2X/BSIII and M06-2X/BSII//M06-2X/BSIII), suggesting that large basis sets (e.g. BSII) are necessary to improve energetics. SCS-MP2 is less accurate than MP2, consistently overestimating bonding enthalpies and reaction barriers. Moreover, six DFT functionals (M05-2X, M06-2X, B3LYP, ωB97X-D, BMK and B97-D) were examined by comparing with the experimental bonding enthalpies of eighteen donor–acceptor complexes, which indicate that M05-2X and M06-2X are still better than others. Nevertheless, M05-2X and M06-2X significantly overestimate or underestimate the bonding enthalpies of F-substituted complexes, implying the necessity of improving the two functionals for describing fluorides. Using the six basis sets (BSI, cc-pVTZ, aug-cc-pVDZ, cc-pVDZ, TZVP and BSII) and DBH15 and BH10 databases, the influence of the basis sets on the performance of M06-2X functional was examined, which reveals that BSII is the most suitable basis set for the functional.
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Affiliation(s)
- Fang Huang
- School of Chemistry and Chemical Engineering, University of Chinese Academy of Sciences, Beijing 100049, P. R. China
| | - Jinliang Jiang
- School of Chemistry and Chemical Engineering, University of Chinese Academy of Sciences, Beijing 100049, P. R. China
| | - Mingwei Wen
- School of Chemistry and Chemical Engineering, University of Chinese Academy of Sciences, Beijing 100049, P. R. China
| | - Zhi-Xiang Wang
- School of Chemistry and Chemical Engineering, University of Chinese Academy of Sciences, Beijing 100049, P. R. China
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377
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Goerigk L. How Do DFT-DCP, DFT-NL, and DFT-D3 Compare for the Description of London-Dispersion Effects in Conformers and General Thermochemistry? J Chem Theory Comput 2014; 10:968-80. [DOI: 10.1021/ct500026v] [Citation(s) in RCA: 69] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Affiliation(s)
- Lars Goerigk
- School
of Chemistry, The University of Sydney, New South Wales 2006, Australia
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378
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Explicitly correlated coupled cluster benchmarks with realistic-sized ligands for some late-transition metal reactions: basis sets convergence and performance of more approximate methods. Theor Chem Acc 2014. [DOI: 10.1007/s00214-014-1452-2] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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379
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Accurate atomization energies from combining coupled-cluster computations with interference-corrected explicitly correlated second-order perturbation theory. Theor Chem Acc 2014. [DOI: 10.1007/s00214-014-1446-0] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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380
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Gu J, Xie Y, Schaefer HF. Benchmarking the Electron Affinity of Uracil. J Chem Theory Comput 2014; 10:609-12. [DOI: 10.1021/ct400958d] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Affiliation(s)
- Jiande Gu
- Drug Design & Discovery Center, State Key Laboratory of Drug Research, Shanghai Institute of Materia Medica, CAS, Shanghai 201203, People’s Republic of China
| | - Yaoming Xie
- Center for Computational
Quantum Chemistry, University of Georgia, Athens, Georgia 30602-2525, United States
| | - Henry F. Schaefer
- Center for Computational
Quantum Chemistry, University of Georgia, Athens, Georgia 30602-2525, United States
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381
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Hennessey DC, Sheppard BJH, Mackenzie DECK, Pearson JK. Predicting bond strength from a single Hartree–Fock ground state using the localized pair model. Phys Chem Chem Phys 2014; 16:25548-56. [DOI: 10.1039/c4cp02669a] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Abstract
We present electron pair distributions within chemical bonds and show that these characterize and quantify chemical bond strength.
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Affiliation(s)
- Dylan C. Hennessey
- Department of Chemistry
- University of Prince Edward Island
- Charlottetown, Canada
| | | | | | - Jason K. Pearson
- Department of Chemistry
- University of Prince Edward Island
- Charlottetown, Canada
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382
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Mardirossian N, Head-Gordon M. ωB97X-V: A 10-parameter, range-separated hybrid, generalized gradient approximation density functional with nonlocal correlation, designed by a survival-of-the-fittest strategy. Phys Chem Chem Phys 2014; 16:9904-24. [DOI: 10.1039/c3cp54374a] [Citation(s) in RCA: 429] [Impact Index Per Article: 39.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
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383
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Stück D, Head-Gordon M. Regularized orbital-optimized second-order perturbation theory. J Chem Phys 2013; 139:244109. [DOI: 10.1063/1.4851816] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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384
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Leavitt CM, Moradi CP, Acrey BW, Douberly GE. Infrared laser spectroscopy of the helium-solvated allyl and allyl peroxy radicals. J Chem Phys 2013; 139:234301. [DOI: 10.1063/1.4844175] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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385
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Accurate quadruple-ζ basis-set approximation for double-hybrid density functional theory with an order of magnitude reduction in computational cost. Theor Chem Acc 2013. [DOI: 10.1007/s00214-013-1426-9] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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386
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Historical perspective on: A fifth-order perturbation comparison of electron correlation theories [Volume 157, Issue 6, 26 May 1989, Pages 479–483]. Chem Phys Lett 2013. [DOI: 10.1016/j.cplett.2013.08.044] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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387
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388
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Addition of Methyl Radical to Substituted Alkenes: A Theoretical Study of the Reaction Mechanism. Isr J Chem 2013. [DOI: 10.1002/ijch.199300048] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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389
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Pople JA, Scott AP, Wong MW, Radom L. Scaling Factors for Obtaining Fundamental Vibrational Frequencies and Zero-Point Energies from HF/6-31G* and MP2/6-31G* Harmonic Frequencies. Isr J Chem 2013. [DOI: 10.1002/ijch.199300041] [Citation(s) in RCA: 742] [Impact Index Per Article: 61.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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390
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Sørensen A, Rasmussen B, Agarwal S, Schau-Magnussen M, Sølling TI, Pittelkow M. Conversion of Phenols into Selenophenols: Seleno Newman-Kwart Rearrangement. Angew Chem Int Ed Engl 2013. [DOI: 10.1002/ange.201303773] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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391
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Rocha CMR, Pereira DH, Morgon NH, Custodio R. Assessment of G3(MP2)//B3 theory including a pseudopotential for molecules containing first-, second-, and third-row representative elements. J Chem Phys 2013; 139:184108. [DOI: 10.1063/1.4826519] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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392
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Ignatyev IS, Montejo M, López González JJ. An assessment of DFT methods for predicting the thermochemistry of ion-molecule reactions of group 14 elements (Si, Ge, Sn). J Mol Model 2013; 19:5439-44. [PMID: 24202234 DOI: 10.1007/s00894-013-2038-y] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2013] [Accepted: 10/17/2013] [Indexed: 11/25/2022]
Abstract
Experimental mass-spectrometry data on thermochemistry of methide transfer reactions (CH₃)₃M(+) + M'(CH₃)₄ ↔ M(CH₃)₄ + (CH₃)₃M'(+) (M, M' = Si, Ge or Sn) and the formation energy of the [(CH₃)₃Si-CH₃-Si(CH₃)₃](+) complex are used as benchmarks for DFT methods (B3LYP, BMK, M06L, and ωB97XD). G2 and G3 theory methods are also used for the prediction of thermochemical data. BMK, M06L, and ωB97XD methods give the best fit to experimental data (close to chemical accuracy) as well as to G2 and G3 results, while B3LYP demonstrates poor performance. From the first three methods M06L gives the best overall result. Structures and formation energies of intermediate "mixed" [(CH₃)₃M-CH₃- M'(CH₃)₃] complexes not observed in experiment are predicted. Their structures, better described as M(CH₃)₄ [M'(CH₃)₃](+) complexes, explain their fast decompositions.
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Affiliation(s)
- Igor S Ignatyev
- Department of Chemistry, Radiochemistry Laboratory, St. Petersburg State University, St. Petersburg, 199034, Russia
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393
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Su NQ, Adamo C, Xu X. A comparison of geometric parameters from PBE-based doubly hybrid density functionals PBE0-DH, PBE0-2, and xDH-PBE0. J Chem Phys 2013; 139:174106. [DOI: 10.1063/1.4827024] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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394
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Zeinalinezhad A, Sahnoun R, Aziz M. Ab initio molecular orbitals studies and NBO analysis of conformational preference in 2-hydroxypiperidine. COMPUT THEOR CHEM 2013. [DOI: 10.1016/j.comptc.2013.09.012] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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395
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Chan B, Radom L. W3X: A Cost-Effective Post-CCSD(T) Composite Procedure. J Chem Theory Comput 2013; 9:4769-78. [PMID: 26583395 DOI: 10.1021/ct4005323] [Citation(s) in RCA: 49] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Abstract
We have formulated the W3X procedure by incorporating cost-effective post-CCSD(T) components (up to the CCSDT(Q) level) into the W1X-1 protocol, the latter representing a recently reported economical yet accurate approximation to CCSD(T)/CBS. For medium-sized systems, W3X is moderately more computationally demanding than W1X-1, but it is significantly less costly than the W3.2lite and (especially) W3.2 procedures. Because of the use of the cost-effective W1X-1 method as the underlying CCSD(T) component, W3X is also less expensive than the W2.2 protocol, which does not incorporate post-CCSD(T) excitations. We find that, for single-reference systems (the G2/97 set and most of the W4-11 set), W3X is comparable in accuracy to the underlying W1X-1 protocol, as might have been expected. For the more challenging cases of the multireference systems within the W4-11 set, the dissociation of F2 and the automerization of cyclobutadiene, W3X provides improved performance compared with the CCSD(T)-based procedures (W1X-1 and W2.2). Highly multireference chromium oxides CrO, CrO2, and CrO3 are still somewhat challenging for W3X (and even for the higher-level W3.2lite and W3.2 procedures), but the inclusion of the economical post-CCSD(T) terms in W3X already leads to a significant improvement over W1X-1. Thus, W3X provides a cost-effective means for treating systems with significant (but perhaps not excessive) multireference character that are otherwise not well-described by CCSD(T)-based methods.
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Affiliation(s)
- Bun Chan
- School of Chemistry and ARC Centre of Excellence for Free Radical Chemistry and Biotechnology, University of Sydney , Sydney, NSW 2006, Australia
| | - Leo Radom
- School of Chemistry and ARC Centre of Excellence for Free Radical Chemistry and Biotechnology, University of Sydney , Sydney, NSW 2006, Australia
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396
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Rosli AN, Bakar MAA, Manan NSA, Woi PM, Lee VS, Zain SM, Ahmad MR, Alias Y. G3 assisted rational design of chemical sensor array using carbonitrile neutral receptors. SENSORS 2013; 13:13835-60. [PMID: 24129020 PMCID: PMC3859094 DOI: 10.3390/s131013835] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/20/2013] [Revised: 07/30/2013] [Accepted: 08/16/2013] [Indexed: 12/11/2022]
Abstract
Combined computational and experimental strategies for the systematic design of chemical sensor arrays using carbonitrile neutral receptors are presented. Binding energies of acetonitrile, n-pentylcarbonitrile and malononitrile with Ca(II), Mg(II), Be(II) and H+ have been investigated with the B3LYP, G3, CBS-QB3, G4 and MQZVP methods, showing a general trend H+ > Be(II) > Mg(II) > Ca(II). Hydrogen bonding, donor-acceptor and cation-lone pair electron simple models were employed in evaluating the performance of computational methods. Mg(II) is bound to acetonitrile in water by 12.5 kcal/mol, and in the gas phase the receptor is more strongly bound by 33.3 kcal/mol to Mg(II) compared to Ca(II). Interaction of bound cations with carbonitrile reduces the energies of the MOs involved in the proposed σ-p conjugated network. The planar malononitrile-Be(II) complex possibly involves a π-network with a cationic methylene carbon. Fabricated potentiometric chemical sensors show distinct signal patterns that can be exploited in sensor array applications.
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Affiliation(s)
- Ahmad Nazmi Rosli
- Department of Chemistry, Faculty of Science Building, University of Malaya, Kuala Lumpur 50603, Malaysia; E-Mails: (M.A.A.B.); (N.S.A.M.); (P.M.W.); (V.S.L.); (S.M.Z.); (Y.A.)
- Author to whom correspondence should be addressed; E-Mail: ; Tel.: +60-3-7967-6774
| | - Maizathul Akmam Abu Bakar
- Department of Chemistry, Faculty of Science Building, University of Malaya, Kuala Lumpur 50603, Malaysia; E-Mails: (M.A.A.B.); (N.S.A.M.); (P.M.W.); (V.S.L.); (S.M.Z.); (Y.A.)
| | - Ninie Suhana Abdul Manan
- Department of Chemistry, Faculty of Science Building, University of Malaya, Kuala Lumpur 50603, Malaysia; E-Mails: (M.A.A.B.); (N.S.A.M.); (P.M.W.); (V.S.L.); (S.M.Z.); (Y.A.)
| | - Pei Meng Woi
- Department of Chemistry, Faculty of Science Building, University of Malaya, Kuala Lumpur 50603, Malaysia; E-Mails: (M.A.A.B.); (N.S.A.M.); (P.M.W.); (V.S.L.); (S.M.Z.); (Y.A.)
| | - Vannajan Sanghiran Lee
- Department of Chemistry, Faculty of Science Building, University of Malaya, Kuala Lumpur 50603, Malaysia; E-Mails: (M.A.A.B.); (N.S.A.M.); (P.M.W.); (V.S.L.); (S.M.Z.); (Y.A.)
| | - Sharifuddin Md Zain
- Department of Chemistry, Faculty of Science Building, University of Malaya, Kuala Lumpur 50603, Malaysia; E-Mails: (M.A.A.B.); (N.S.A.M.); (P.M.W.); (V.S.L.); (S.M.Z.); (Y.A.)
| | - Mohd Rais Ahmad
- NEMS & Photonics Laboratory, MIMOS Berhad, Technology Park Malaysia, Kuala Lumpur 57000, Malaysia; E-Mail:
| | - Yatimah Alias
- Department of Chemistry, Faculty of Science Building, University of Malaya, Kuala Lumpur 50603, Malaysia; E-Mails: (M.A.A.B.); (N.S.A.M.); (P.M.W.); (V.S.L.); (S.M.Z.); (Y.A.)
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397
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Viegas LP, Varandas AJC. Coupled‐cluster reaction barriers of : An application of the coupled‐cluster//Kohn–Sham density functional theory model chemistry. J Comput Chem 2013; 35:507-17. [DOI: 10.1002/jcc.23458] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2013] [Revised: 09/06/2013] [Accepted: 09/12/2013] [Indexed: 11/10/2022]
Affiliation(s)
- Luís P. Viegas
- Departamento de QuímicaUniversidade de Coimbra3004‐535Coimbra Portugal
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398
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Gillan MJ, Alfè D, Bygrave PJ, Taylor CR, Manby FR. Energy benchmarks for water clusters and ice structures from an embedded many-body expansion. J Chem Phys 2013; 139:114101. [DOI: 10.1063/1.4820906] [Citation(s) in RCA: 52] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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399
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Sørensen A, Rasmussen B, Agarwal S, Schau-Magnussen M, Sølling TI, Pittelkow M. Conversion of phenols into selenophenols: seleno Newman-Kwart rearrangement. Angew Chem Int Ed Engl 2013; 52:12346-9. [PMID: 24105866 DOI: 10.1002/anie.201303773] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2013] [Revised: 07/30/2013] [Indexed: 11/11/2022]
Abstract
A 'Se'lling point: The first thermally induced OAr →SeAr migration reaction is reported, and it can be used to prepare aryl selenols in three steps from the corresponding phenols. O-aryl selenocarbamates rearrange to Se-aryl carbamates via a four-membered transition state. The aryl selenols (isolated as the diselenides) can be prepared by hydrolysis of the Se-aryl selenocarbamates.
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Affiliation(s)
- Anne Sørensen
- University of Copenhagen, Department of Chemistry, Universitetsparken 5, 2100 Copenhagen Ø (Denmark) http://www.pittelkow.kiku.dk
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400
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