• Reference Citation Analysis
  • v
  • v
  • Find an Article
Find an Article PDF (4602587)   Today's Articles (2338)   Subscriber (49368)
For: Lijnzaad P, Berendsen HJ, Argos P. Hydrophobic patches on the surfaces of protein structures. Proteins 1996;25:389-97. [PMID: 8844873 DOI: 10.1002/(sici)1097-0134(199607)25:3<389::aid-prot10>3.0.co;2-e] [Citation(s) in RCA: 23] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
Number Cited by Other Article(s)
1
Hoerschinger V, Waibl F, Pomarici ND, Loeffler JR, Deane CM, Georges G, Kettenberger H, Fernández-Quintero ML, Liedl KR. PEP-Patch: Electrostatics in Protein-Protein Recognition, Specificity, and Antibody Developability. J Chem Inf Model 2023;63:6964-6971. [PMID: 37934909 PMCID: PMC10685443 DOI: 10.1021/acs.jcim.3c01490] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2023] [Revised: 10/14/2023] [Accepted: 10/16/2023] [Indexed: 11/09/2023]
2
Nikam R, Yugandhar K, Gromiha MM. DeepBSRPred: deep learning-based binding site residue prediction for proteins. Amino Acids 2023;55:1305-1316. [PMID: 36574037 DOI: 10.1007/s00726-022-03228-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2022] [Accepted: 12/15/2022] [Indexed: 12/28/2022]
3
Roy A, Ray S. An in-silico study to understand the effect of lineage diversity on cold shock response: unveiling protein-RNA interactions among paralogous CSPs of E. coli. 3 Biotech 2023;13:236. [PMID: 37333716 PMCID: PMC10272043 DOI: 10.1007/s13205-023-03656-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2023] [Accepted: 05/30/2023] [Indexed: 06/20/2023]  Open
4
Kocher C, Dill KA. Origins of life: first came evolutionary dynamics. QRB DISCOVERY 2023;4:e4. [PMID: 37529034 PMCID: PMC10392681 DOI: 10.1017/qrd.2023.2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2023] [Revised: 03/07/2023] [Accepted: 03/08/2023] [Indexed: 08/03/2023]  Open
5
Waibl F, Fernández-Quintero ML, Wedl FS, Kettenberger H, Georges G, Liedl KR. Comparison of hydrophobicity scales for predicting biophysical properties of antibodies. Front Mol Biosci 2022;9:960194. [PMID: 36120542 PMCID: PMC9475378 DOI: 10.3389/fmolb.2022.960194] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2022] [Accepted: 08/09/2022] [Indexed: 11/13/2022]  Open
6
Hsu CH, Chen WL, Hsieh MF, Gu Y, C.-W. Wu K. Construction of magnetic Fe3O4@NH2-MIL-100(Fe)-C18 with excellent hydrophobicity for effective protein separation and purification. Sep Purif Technol 2022. [DOI: 10.1016/j.seppur.2022.121986] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
7
Arteaga-Castrejón AA, Trejo-Hernández MR, Mekmouche Y, Amouric A, Rousselot-Pailley P, Robert V, Tron T, Martínez-Morales F. Relevance of Surface-Exposed Lysine Residues Designed for Functionalization of Laccase. Mol Biol 2022. [DOI: 10.1134/s0026893322040021] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
8
Béreux S, Delmas B, Cazals F. Boosting the analysis of protein interfaces with multiple interface string alignments: Illustration on the spikes of coronaviruses. Proteins 2021;90:848-857. [PMID: 34779026 DOI: 10.1002/prot.26279] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/23/2020] [Revised: 06/24/2021] [Accepted: 10/19/2021] [Indexed: 11/11/2022]
9
Draper SRE, Ashton DS, Conover BM, Carter AJ, Stern KL, Xiao Q, Price JL. PEGylation near a Patch of Nonpolar Surface Residues Increases the Conformational Stability of the WW Domain. J Org Chem 2020;85:1725-1730. [PMID: 31749365 DOI: 10.1021/acs.joc.9b02615] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
10
Faccio G. From Protein Features to Sensing Surfaces. SENSORS (BASEL, SWITZERLAND) 2018;18:E1204. [PMID: 29662030 PMCID: PMC5948494 DOI: 10.3390/s18041204] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/28/2018] [Revised: 04/08/2018] [Accepted: 04/12/2018] [Indexed: 12/25/2022]
11
Foldamer hypothesis for the growth and sequence differentiation of prebiotic polymers. Proc Natl Acad Sci U S A 2017;114:E7460-E7468. [PMID: 28831002 DOI: 10.1073/pnas.1620179114] [Citation(s) in RCA: 35] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]  Open
12
Moal IH, Dapkūnas J, Fernández-Recio J. Inferring the microscopic surface energy of protein-protein interfaces from mutation data. Proteins 2015;83:640-50. [PMID: 25586563 DOI: 10.1002/prot.24761] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2014] [Revised: 12/04/2014] [Accepted: 12/21/2014] [Indexed: 11/11/2022]
13
Sammond DW, Yarbrough JM, Mansfield E, Bomble YJ, Hobdey SE, Decker SR, Taylor LE, Resch MG, Bozell JJ, Himmel ME, Vinzant TB, Crowley MF. Predicting enzyme adsorption to lignin films by calculating enzyme surface hydrophobicity. J Biol Chem 2014;289:20960-9. [PMID: 24876380 DOI: 10.1074/jbc.m114.573642] [Citation(s) in RCA: 76] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
14
Xue LC, Dobbs D, Honavar V. HomPPI: a class of sequence homology based protein-protein interface prediction methods. BMC Bioinformatics 2011;12:244. [PMID: 21682895 PMCID: PMC3213298 DOI: 10.1186/1471-2105-12-244] [Citation(s) in RCA: 78] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2010] [Accepted: 06/17/2011] [Indexed: 01/12/2023]  Open
15
The theoretical three-dimensional structure of Bacillus thuringiensis Cry5Aa and its biological implications. Protein J 2009;28:104-10. [PMID: 19191014 DOI: 10.1007/s10930-009-9169-0] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
16
Tuncbag N, Kar G, Keskin O, Gursoy A, Nussinov R. A survey of available tools and web servers for analysis of protein-protein interactions and interfaces. Brief Bioinform 2009;10:217-32. [PMID: 19240123 DOI: 10.1093/bib/bbp001] [Citation(s) in RCA: 119] [Impact Index Per Article: 7.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]  Open
17
De Simone A, Corrie JET, Dale RE, Irving M, Fraternali F. Conformation and dynamics of a rhodamine probe attached at two sites on a protein: implications for molecular structure determination in situ. J Am Chem Soc 2009;130:17120-8. [PMID: 19053408 DOI: 10.1021/ja807264v] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
18
Xia LQ, Zhao XM, Ding XZ, Wang FX, Sun YJ. The theoretical 3D structure of Bacillus thuringiensis Cry5Ba. J Mol Model 2008;14:843-8. [PMID: 18504623 DOI: 10.1007/s00894-008-0318-8] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2007] [Accepted: 04/16/2008] [Indexed: 10/22/2022]
19
Hoskins J, Lovell S, Blundell TL. An algorithm for predicting protein-protein interaction sites: Abnormally exposed amino acid residues and secondary structure elements. Protein Sci 2006;15:1017-29. [PMID: 16641487 PMCID: PMC2242518 DOI: 10.1110/ps.051589106] [Citation(s) in RCA: 43] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
20
Boonserm P, Mo M, Angsuthanasombat C, Lescar J. Structure of the functional form of the mosquito larvicidal Cry4Aa toxin from Bacillus thuringiensis at a 2.8-angstrom resolution. J Bacteriol 2006;188:3391-401. [PMID: 16621834 PMCID: PMC1447447 DOI: 10.1128/jb.188.9.3391-3401.2006] [Citation(s) in RCA: 104] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
21
Ponstingl H, Kabir T, Gorse D, Thornton JM. Morphological aspects of oligomeric protein structures. PROGRESS IN BIOPHYSICS AND MOLECULAR BIOLOGY 2005;89:9-35. [PMID: 15895504 DOI: 10.1016/j.pbiomolbio.2004.07.010] [Citation(s) in RCA: 54] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
22
Caffrey DR, Somaroo S, Hughes JD, Mintseris J, Huang ES. Are protein-protein interfaces more conserved in sequence than the rest of the protein surface? Protein Sci 2004;13:190-202. [PMID: 14691234 PMCID: PMC2286531 DOI: 10.1110/ps.03323604] [Citation(s) in RCA: 226] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
23
Webb JH, Villoutreix BO, Dahlback B, Blom AM. Localization of a hydrophobic binding site for anticoagulant protein S on the beta -chain of complement regulator C4b-binding protein. J Biol Chem 2001;276:4330-7. [PMID: 11050085 DOI: 10.1074/jbc.m006541200] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
24
Cheng YK, Sheu WS, Rossky PJ. Hydrophobic hydration of amphipathic peptides. Biophys J 1999;76:1734-43. [PMID: 10096874 PMCID: PMC1300152 DOI: 10.1016/s0006-3495(99)77335-2] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]  Open
25
Reid KL, Rodriguez HM, Hillier BJ, Gregoret LM. Stability and folding properties of a model beta-sheet protein, Escherichia coli CspA. Protein Sci 1998;7:470-9. [PMID: 9521124 PMCID: PMC2143919 DOI: 10.1002/pro.5560070228] [Citation(s) in RCA: 74] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
PrevPage 1 of 1 1Next
© 2004-2024 Baishideng Publishing Group Inc. All rights reserved. 7041 Koll Center Parkway, Suite 160, Pleasanton, CA 94566, USA