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Gajst J, Semelak JA, Scherlis D, Olabe JA, Marcolongo JP. Inorganic Polysulfides in Solution: Structural Properties and Conformational Isomerism. Inorg Chem 2024; 63:12385-12398. [PMID: 38771732 DOI: 10.1021/acs.inorgchem.4c01084] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/23/2024]
Abstract
We present a comprehensive theoretical examination of the structural properties of dianionic polysulfides [Sn]2- (n = 2-6), their conjugated monoacids [HSn]- (n = 2-6), and a selection of 1e--oxidized radical anions [Sn]•- (n = 2-4), in aqueous and dimethyl sulfoxide (DMSO) solutions. We investigated the structures and stabilities of various conformational isomers within these families of compounds by employing Quantum Mechanics-Molecular Mechanics (QM-MM) Molecular Dynamics (MD) simulations. The explicit inclusion of solvent molecules in the calculations revealed stable conformational structures that were previously unreported and might have appreciable concentrations in real systems. The interconversions between the isomeric structures proceed on the order of hundreds of picoseconds and are energetically similar to the isomerization processes in substituted cyclohexanes. We also conducted a detailed analysis of the stability of different isomers of the radical anion [S4]•- in solution. Our findings highlight the significant influence of the solvent on the isomerizations, a result that could be particularly relevant for enhancing the performance of metal-sulfur batteries.
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Affiliation(s)
- Joaquín Gajst
- Departamento de Química Inorgánica, Analítica y Química Física, Facultad de Ciencias Exactas y Naturales, and INQUIMAE, Universidad de Buenos Aires - CONICET, Pabellón 2, Ciudad Universitaria, C1428EHA Ciudad Autónoma de Buenos Aires, Argentina
| | - Jonathan A Semelak
- Departamento de Química Inorgánica, Analítica y Química Física, Facultad de Ciencias Exactas y Naturales, and INQUIMAE, Universidad de Buenos Aires - CONICET, Pabellón 2, Ciudad Universitaria, C1428EHA Ciudad Autónoma de Buenos Aires, Argentina
| | - Damián Scherlis
- Departamento de Química Inorgánica, Analítica y Química Física, Facultad de Ciencias Exactas y Naturales, and INQUIMAE, Universidad de Buenos Aires - CONICET, Pabellón 2, Ciudad Universitaria, C1428EHA Ciudad Autónoma de Buenos Aires, Argentina
| | - José A Olabe
- Departamento de Química Inorgánica, Analítica y Química Física, Facultad de Ciencias Exactas y Naturales, and INQUIMAE, Universidad de Buenos Aires - CONICET, Pabellón 2, Ciudad Universitaria, C1428EHA Ciudad Autónoma de Buenos Aires, Argentina
| | - Juan P Marcolongo
- Departamento de Química Inorgánica, Analítica y Química Física, Facultad de Ciencias Exactas y Naturales, and INQUIMAE, Universidad de Buenos Aires - CONICET, Pabellón 2, Ciudad Universitaria, C1428EHA Ciudad Autónoma de Buenos Aires, Argentina
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Jungen S, Paenurk E, Chen P. Synthesis, Spectroscopic, and Structural Characterization of Organyl Disulfanides and a Tetrasulfanide. Inorg Chem 2020; 59:12322-12336. [PMID: 32790993 DOI: 10.1021/acs.inorgchem.0c01426] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Various room-temperature-stable monoorganylpolysulfanides of the form [X][RSn] (X = [PPh4]+, [PNP]+, [NEt4]+; R = Ph, t-Bu, n ≥ 2) were synthesized in a simple and versatile one-step process starting from sodium thiolates and elemental sulfur. The compounds were characterized by X-ray crystal structure analysis, NMR spectroscopy, microelemental analysis, and electrospray mass ionization spectrometry including collision-induced dissociation experiments. While these salts are well-defined species as crystals, they undergo complex equilibria in solution. In one case, compounds ranging from n = 1-8 have been observed in solution. Structural features, dynamics in solution, as well as thermochromic properties of one of the compounds, [PPh4][PhS2], are investigated in detail by temperature- and pressure-dependent X-ray crystal structure analysis. The experimental data are complemented by periodic boundary density functional theory calculations on the crystal structures, as well as energy decomposition analyses.
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Affiliation(s)
- Stefan Jungen
- Laboratorium für Organische Chemie, ETH Zürich, Vladimir-Prelog-Weg 2 8093 Zürich, Switzerland
| | - Eno Paenurk
- Laboratorium für Organische Chemie, ETH Zürich, Vladimir-Prelog-Weg 2 8093 Zürich, Switzerland
| | - Peter Chen
- Laboratorium für Organische Chemie, ETH Zürich, Vladimir-Prelog-Weg 2 8093 Zürich, Switzerland
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Audran G, Marque SRA, Santelli M. Power Law Distribution Concerning Absolute Free Energies of Linear Sulfur Chains, Polythiazyls, Polyisoprenes, Linear trans-Polyenes, and Polyynes. J Phys Chem A 2019; 123:1380-1388. [PMID: 30676742 DOI: 10.1021/acs.jpca.8b09969] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
After quantum calculations of absolute free energies of polyatomic sulfur derivatives or hydrocarbon oligomer compounds, we have studied the variations of G n as a function of the number of repeating units n (sulfur atoms or hydrocarbon units, n = 2 to about 60), and observed that these values can be correlated by (a) a nearly perfect linear relationship, G n = An + B (A and B, constants), with a high accuracy which enables an extrapolation for higher values of n, and (b) a power law:, δ G = G n/ n - G( n-1) /( n - 1) = C/ n d ( C and d, constants). From comparison of variations of the C-C bond lengths, we show that the conjugation of trans-polyenes (up to C60H62) is more important than for polyynes (up to C60H2).
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Affiliation(s)
- Gérard Audran
- CNRS, ICR , Aix Marseille Université , 13331 Marseille , France
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Abstract
Signaling by H2S is proposed to occur via persulfidation, a posttranslational modification of cysteine residues (RSH) to persulfides (RSSH). Persulfidation provides a framework for understanding the physiological and pharmacological effects of H2S. Due to the inherent instability of persulfides, their chemistry is understudied. In this review, we discuss the biologically relevant chemistry of H2S and the enzymatic routes for its production and oxidation. We cover the chemical biology of persulfides and the chemical probes for detecting them. We conclude by discussing the roles ascribed to protein persulfidation in cell signaling pathways.
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Affiliation(s)
- Milos R. Filipovic
- Univeristy of Bordeaux, IBGC, UMR 5095, F-33077 Bordeaux, France
- CNRS, IBGC, UMR 5095, F-33077 Bordeaux, France
| | - Jasmina Zivanovic
- Univeristy of Bordeaux, IBGC, UMR 5095, F-33077 Bordeaux, France
- CNRS, IBGC, UMR 5095, F-33077 Bordeaux, France
| | - Beatriz Alvarez
- Laboratorio de Enzimología, Facultad de Ciencias and Center for Free Radical and Biomedical Research, Universidad de la Republica, 11400 Montevideo, Uruguay
| | - Ruma Banerjee
- Department of Biological Chemistry, University of Michigan Medical School, Ann Arbor, Michigan 48109-0600, United States
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5
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Theoretical investigations on the conversions of cyclic polysulfides to acyclic polysulfide diradicals and subsequent reactions of biological interest. Tetrahedron 2017. [DOI: 10.1016/j.tet.2017.05.024] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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Castillo A, Lee L, Greer A. Encapsulation and convex-face thiozonolysis of triatomic sulfur (S(3)) with carbon nanotubes. J PHYS ORG CHEM 2011; 25:42-49. [PMID: 22701272 DOI: 10.1002/poc.1866] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
Abstract
Nanotubes are a class of host cavities increasingly used to encapsulate unstable molecules, yet none have been exploited to host reactive sulfur species, such as thiozone (S(3)). In this paper, density functional theory and (ONIOM) calculations were used to compute single-walled carbon nanotube (SWNT)-thiozone combinations for the inclusion of S(3) into the hollow nanotube space and to rationalize when 1,2,3-thiozonide formation can take place. Nanotube diameter selectivity for the isomerization of the C(2v) form of S(3) to the D(3h) form proved to be elusive. Acyclic C(2v) S(3) was ~6 kcal/mol more stable than cyclic D(3h) S(3) whether it was free or encapsulated within an SWNT. 1,2,3-Thiozonide formation took place on the convex side of nanotubes of low tube radii, such as the armchair (4,4) and (5,5) SWNTs. In terms of the reaction mode of C(2v) S(3), the 1,3-dipolar addition reaction was preferred compared with the [2 + 2] cycloaddition and chelotrope paths.
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Affiliation(s)
- Alvaro Castillo
- Department of Chemistry and Graduate Center, City University of New York, Brooklyn College, Brooklyn, NY 11210, USA
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de Petris G, Cartoni A, Cipollini R, Rosi M, Troiani A. Experimental and Theoretical Evidence for HS 4. J Phys Chem A 2009; 113:14420-3. [DOI: 10.1021/jp9036556] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Affiliation(s)
- Giulia de Petris
- Dipartimento di Chimica e Tecnologie del Farmaco, Università “La Sapienza”, Piazzale Aldo Moro, 5-00185 Rome, Italy, Dipartimento di Ingegneria Civile ed Ambientale, ISTM-CNR, Università di Perugia, Via Duranti, I-06131, Perugia, Italy
| | - Antonella Cartoni
- Dipartimento di Chimica e Tecnologie del Farmaco, Università “La Sapienza”, Piazzale Aldo Moro, 5-00185 Rome, Italy, Dipartimento di Ingegneria Civile ed Ambientale, ISTM-CNR, Università di Perugia, Via Duranti, I-06131, Perugia, Italy
| | - Romano Cipollini
- Dipartimento di Chimica e Tecnologie del Farmaco, Università “La Sapienza”, Piazzale Aldo Moro, 5-00185 Rome, Italy, Dipartimento di Ingegneria Civile ed Ambientale, ISTM-CNR, Università di Perugia, Via Duranti, I-06131, Perugia, Italy
| | - Marzio Rosi
- Dipartimento di Chimica e Tecnologie del Farmaco, Università “La Sapienza”, Piazzale Aldo Moro, 5-00185 Rome, Italy, Dipartimento di Ingegneria Civile ed Ambientale, ISTM-CNR, Università di Perugia, Via Duranti, I-06131, Perugia, Italy
| | - Anna Troiani
- Dipartimento di Chimica e Tecnologie del Farmaco, Università “La Sapienza”, Piazzale Aldo Moro, 5-00185 Rome, Italy, Dipartimento di Ingegneria Civile ed Ambientale, ISTM-CNR, Università di Perugia, Via Duranti, I-06131, Perugia, Italy
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Denk MK. The Variable Strength of the Sulfur-Sulfur Bond: 78 to 41 kcal - G3, CBS-Q, and DFT Bond Energies of Sulfur (S8) and Disulfanes XSSX (X = H, F, Cl, CH3, CN, NH2, OH, SH). Eur J Inorg Chem 2009. [DOI: 10.1002/ejic.200800880] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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de Petris G, Cartoni A, Rosi M, Troiani A. The HSSS Radical and the HSSS− Anion. J Phys Chem A 2008; 112:8471-7. [DOI: 10.1021/jp8055637] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Giulia de Petris
- Dipartimento di Chimica e Tecnologie del Farmaco, Università “La Sapienza”, Piazzale Aldo Moro 5, 00185 Rome, Italy, and Dipartimento di Ingegneria Civile ed Ambientale—Sezione Tecnologie Chimiche e Materiali per l’Ingegneria, ISTM-CNR—Università di Perugia, Via Duranti, I-06131, Perugia, Italy
| | - Antonella Cartoni
- Dipartimento di Chimica e Tecnologie del Farmaco, Università “La Sapienza”, Piazzale Aldo Moro 5, 00185 Rome, Italy, and Dipartimento di Ingegneria Civile ed Ambientale—Sezione Tecnologie Chimiche e Materiali per l’Ingegneria, ISTM-CNR—Università di Perugia, Via Duranti, I-06131, Perugia, Italy
| | - Marzio Rosi
- Dipartimento di Chimica e Tecnologie del Farmaco, Università “La Sapienza”, Piazzale Aldo Moro 5, 00185 Rome, Italy, and Dipartimento di Ingegneria Civile ed Ambientale—Sezione Tecnologie Chimiche e Materiali per l’Ingegneria, ISTM-CNR—Università di Perugia, Via Duranti, I-06131, Perugia, Italy
| | - Anna Troiani
- Dipartimento di Chimica e Tecnologie del Farmaco, Università “La Sapienza”, Piazzale Aldo Moro 5, 00185 Rome, Italy, and Dipartimento di Ingegneria Civile ed Ambientale—Sezione Tecnologie Chimiche e Materiali per l’Ingegneria, ISTM-CNR—Università di Perugia, Via Duranti, I-06131, Perugia, Italy
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Keerthi K, Gates KS. Entering the leinamycin rearrangement via 2-(trimethylsilyl)ethyl sulfoxides. Org Biomol Chem 2007; 5:1595-600. [PMID: 17571189 PMCID: PMC2812901 DOI: 10.1039/b701179b] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Attack of cellular thiols on the antitumor natural product leinamycin is believed to generate a sulfenate intermediate that undergoes subsequent rearrangement to a DNA-alkylating episulfonium ion. Here, 2-(trimethylsilyl)ethyl sulfoxides were employed in a fluoride-triggered generation of sulfenate anions related to the putative leinamycin-sulfenate. The resulting sulfenates enter smoothly into a leinamycin-type rearrangement reaction to afford an episulfonium ion alkylating agent. The results provide evidence that the sulfenate ion is, indeed, a competent intermediate in the leinamycin rearrangement. Further, the molecules examined here may provide a foundation for the design of functional leinamycin analogues that bypass the unstable and synthetically challenging 1,2-dithiolan-3-one 1-oxide moiety found in the natural product.
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Affiliation(s)
- Kripa Keerthi
- Department of Chemistry and Biochemistry, University of Missouri-Columbia, Columbia, MO 65211, USA
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Chatterji T, Keerthi K, Gates KS. Generation of reactive oxygen species by a persulfide (BnSSH). Bioorg Med Chem Lett 2005; 15:3921-4. [PMID: 16005218 DOI: 10.1016/j.bmcl.2005.05.110] [Citation(s) in RCA: 62] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2005] [Revised: 05/24/2005] [Accepted: 05/25/2005] [Indexed: 01/23/2023]
Abstract
Hydropersulfides (RS(x)SH) have been implicated as important intermediates in the cell-killing action of the anticancer natural products leinamycin and varacin. It has been suggested that persulfides can mediate the conversion of molecular oxygen to reactive oxygen species (O2*-, H2O2, and HO*). Here, experiments with synthetic benzyl hydrodisulfide (BnSSH) provide direct evidence that persulfides readily decompose to produce reactive oxygen species under physiologically relevant conditions.
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Affiliation(s)
- Tonika Chatterji
- Department of Chemistry, University of Missouri-Columbia, Columbia, MO 65211, USA
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Zysman-colman E, Farrell PG, Harpp DN. Desulfurization of aromatic polysulfides with triphenylphosphine. J Sulphur Chem 2004. [DOI: 10.1080/1741599042000203364] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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13
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el Jaroudi O, Picquenard E, Demortier A, Lelieur JP, Corset J. Polysulfide anions II: structure and vibrational spectra of the S4(2-) and S5(2-) anions. Influence of the cations on bond length, valence, and torsion angle. Inorg Chem 2000; 39:2593-603. [PMID: 11197015 DOI: 10.1021/ic991419x] [Citation(s) in RCA: 47] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The influence of the cations on bond length, valence, and torsion angle of S4(2-) and S5(2-) anions was examined in a series of solid alkali tetra- and pentasulfides by relating their Raman spectra to their known X-ray structures through a force-field analysis. The IR and Raman spectra of BaS4.H2O and the Raman spectra of (NH4)2S4.nNH3, gamma-Na2S4, and delta-Na2S5 are presented. The similarity of spectra of gamma-Na2S4 with those of BaS4.H2O suggests similar structures of the S4(2-) anions in these two compounds with a torsion angle smaller than 90 degrees. The variations of SS bond length, SSS valence angle, and dihedral angle of Sn2- anions are related to the polarization of the lone pair and electronic charge of the anion by the electric field of the cations. A correlation between the torsion angle and the SSS valence angle is shown as that previously reported between the length of the bond around which the torsion takes place and the dihedral angle value. These geometry changes are explained by the hyperconjugation concept and the electron long-pair repulsion.
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Affiliation(s)
- O el Jaroudi
- Laboratoire de Dynamique, Interactions et Réactivité, U.M.R. 7075 Université P. & M. Curie, Centre National de la Recherche Scientifique, 2 Rue Henri Dunant 94320 Thiais, France
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Steudel R, Hassenberg K, Münchow V, Schumann O, Pickardt J. Preparation of Organic Polysulfanes R2Sn (n = 5, 7, 8, 9) from Sulfenyl Chlorides, RSCl, and Transition Metal Polysulfido Complexes. Eur J Inorg Chem 2000. [DOI: 10.1002/(sici)1099-0682(200005)2000:5<921::aid-ejic921>3.0.co;2-2] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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