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Koay CG, Ozarslan E, Johnson KM, Meyerand ME. Sparse and optimal acquisition design for diffusion MRI and beyond. Med Phys 2012; 39:2499-511. [PMID: 22559620 DOI: 10.1118/1.3700166] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023] Open
Abstract
PURPOSE Diffusion magnetic resonance imaging (MRI) in combination with functional MRI promises a whole new vista for scientists to investigate noninvasively the structural and functional connectivity of the human brain-the human connectome, which had heretofore been out of reach. As with other imaging modalities, diffusion MRI data are inherently noisy and its acquisition time-consuming. Further, a faithful representation of the human connectome that can serve as a predictive model requires a robust and accurate data-analytic pipeline. The focus of this paper is on one of the key segments of this pipeline-in particular, the development of a sparse and optimal acquisition (SOA) design for diffusion MRI multiple-shell acquisition and beyond. METHODS The authors propose a novel optimality criterion for sparse multiple-shell acquisition and quasimultiple-shell designs in diffusion MRI and a novel and effective semistochastic and moderately greedy combinatorial search strategy with simulated annealing to locate the optimum design or configuration. The goal of the optimality criteria is threefold: first, to maximize uniformity of the diffusion measurements in each shell, which is equivalent to maximal incoherence in angular measurements; second, to maximize coverage of the diffusion measurements around each radial line to achieve maximal incoherence in radial measurements for multiple-shell acquisition; and finally, to ensure maximum uniformity of diffusion measurement directions in the limiting case when all the shells are coincidental as in the case of a single-shell acquisition. The approach taken in evaluating the stability of various acquisition designs is based on the condition number and the A-optimal measure of the design matrix. RESULTS Even though the number of distinct configurations for a given set of diffusion gradient directions is very large in general-e.g., in the order of 10(232) for a set of 144 diffusion gradient directions, the proposed search strategy was found to be effective in finding the optimum configuration. It was found that the square design is the most robust (i.e., with stable condition numbers and A-optimal measures under varying experimental conditions) among many other possible designs of the same sample size. Under the same performance evaluation, the square design was found to be more robust than the widely used sampling schemes similar to that of 3D radial MRI and of diffusion spectrum imaging (DSI). CONCLUSIONS A novel optimality criterion for sparse multiple-shell acquisition and quasimultiple-shell designs in diffusion MRI and an effective search strategy for finding the best configuration have been developed. The results are very promising, interesting, and practical for diffusion MRI acquisitions.
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Affiliation(s)
- Cheng Guan Koay
- Department of Medical Physics, University of Wisconsin School of Medicine and Public Health, Madison, WI 53705, USA.
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Haider CR, Hu HH, Campeau NG, Huston J, Riederer SJ. 3D high temporal and spatial resolution contrast-enhanced MR angiography of the whole brain. Magn Reson Med 2009; 60:749-60. [PMID: 18727101 DOI: 10.1002/mrm.21675] [Citation(s) in RCA: 80] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
Sensitivity encoding (SENSE) and partial Fourier techniques have been shown to reduce the acquisition time and provide high diagnostic quality images. However, for time-resolved acquisitions there is a need for both high temporal and spatial resolution. View sharing can be used to provide an increased frame rate but at the cost of acquiring spatial frequencies over a duration longer than a frame time. In this work we hypothesize that a CArtesian Projection Reconstruction-like (CAPR) technique in combination with 2D SENSE, partial Fourier, and view sharing can provide 1-2 mm isotropic resolution with sufficient temporal resolution to distinguish intracranial arterial and venous phases of contrast passage in whole-brain angiography. In doing so, the parameter of "temporal footprint" is introduced as a descriptor for characterizing and comparing time-resolved view-shared pulse sequences. It is further hypothesized that short temporal footprint sequences have higher temporal fidelity than similar sequences with longer temporal footprints. The tradeoff of temporal footprint and temporal acceleration is presented and characterized in numerical simulations. Results from 11 whole-brain contrast-enhanced MR angiography studies with the new method with SENSE acceleration factors R = 4 and 5.3 are shown to provide images of comparable or higher diagnostic quality than the unaccelerated reference.
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Affiliation(s)
- Clifton R Haider
- MR Research Laboratory, Mayo Clinic, Rochester, Minnesota 55905, USA
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Madhuranthakam AJ, Hu HH, Kruger DG, Riederer SJ. Numerical equilibration of signal intensity and spatial resolution in time-resolved continuously moving table imaging. Magn Reson Med 2006; 55:694-9. [PMID: 16450354 DOI: 10.1002/mrm.20800] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
Time-resolved continuously moving table imaging techniques have been previously developed to observe a dynamically changing phenomenon over an extended field-of-view. The acquisition involves differential k-space sampling and view sharing. Since the table is continuously moving during data acquisition, the k-space for any longitudinal position is sampled only sparsely for the first reconstruction timeframe and is progressively more fully sampled for subsequent frames. Consequently, the signal intensity increases and the lateral spatial resolution improves from frame to frame even for static materials, which can mask true dynamically changing phenomena. This work provides a description of this effect and a means for signal correction in the early reconstruction frames, thus permitting any residual variation in signal intensity to be primarily attributed to true dynamic processes. The method is tested experimentally on a static phantom and in a peripheral vascular study designed to observe the leading edge of the contrast bolus.
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Affiliation(s)
- Ananth J Madhuranthakam
- MR Research Lab and Dept. of Radiology, Mayo Clinic College of Medicine, Rochester, MN 55905, USA
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Elgort DR, Duerk JL. A review of technical advances in interventional magnetic resonance imaging. Acad Radiol 2005; 12:1089-99. [PMID: 16099690 DOI: 10.1016/j.acra.2005.06.003] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2005] [Revised: 06/01/2005] [Accepted: 06/01/2005] [Indexed: 10/25/2022]
Abstract
Initial research in the development of interventional magnetic resonance (MR) imaging in the late 1980s and early to mid-1990s focused on pulse sequences, devices, and clinical applications. This focus was largely a result of the limited number of areas in which the academic research community leading the development could provide innovation on the MR systems of the time. However, during the past decade, computational power, higher bandwidth graphical displays, faster computer networks, improved pulse sequence architectures, and improved technical specifications have accelerated the pace of development on modern MR systems. Today, it is the combination of multiple system factors that are enabling the future of interventional MR. These developments, their impact on the field, and newly emerging applications are described.
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Affiliation(s)
- Daniel R Elgort
- Department of Radiology-MRI, Case Western Reserve University and University Hospitals of Cleveland, 11100 Euclid Avenue, Cleveland, OH 44106, USA
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Madhuranthakam AJ, Kruger DG, Riederer SJ, Glockner JF, Hu HH. Time-resolved 3D contrast-enhanced MRA of an extended FOV using continuous table motion. Magn Reson Med 2004; 51:568-76. [PMID: 15004799 DOI: 10.1002/mrm.10729] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
A method is presented for acquiring 3D time-resolved MR images of an extended (>100 cm) longitudinal field of view (FOV), as used for peripheral MR angiographic runoff studies. Previous techniques for long-FOV peripheral MRA have generally provided a single image (i.e., with no time resolution). The technique presented here generates a time series of 3D images of the FOV that lies within the homogeneous volume of the magnet. This is achieved by differential sampling of 3D k-space during continuous motion of the patient table. Each point in the object is interrogated in five consecutive 3D image sets generated at 2.5-s intervals. The method was tested experimentally in eight human subjects, and the leading edge of the bolus was observed in real time and maintained within the imaging FOV. The data revealed differential bolus velocities along the vasculature of the legs.
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Affiliation(s)
- Ananth J Madhuranthakam
- MR Research Laboratory, Department of Radiology, Mayo Clinic College of Medicine, Rochester, Minnesota 55905, USA
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Abstract
PURPOSE OF REVIEW The capabilities of interventional radiology are developing faster than perhaps any other branch of medicine. Coupled with and fuelled by parallel advances in computer technology, medical physics and developments in endovascular catheter technology, interventional radiologists are innovating not only replacements for open surgeries, but entirely new therapies as well. This has, however, provided a range of new potential complications for the patient and, in contrast to other areas, presents risks for the anesthesiologist as well. RECENT FINDINGS The techniques involved in interventional radiology have found applications throughout not only medicine but surgery in particular. Here there has been a medicalization of surgical procedures. CT scanning has evolved to the extent that it is now possible to utilize multislice CT scanners, ones with multiple, flat panel digital detectors, to provide real time CT fluoroscopy. Similarly this technology has facilitated the construction of hybrid iMR/X-ray systems, thus enabling dual modality imaging without moving the patient. Another facet of the new breed of iMR systems is their integration in real time with computerized, frameless stereotactic navigation systems. This has enabled the radiological image to keep pace with the changes in anatomy consequent to anesthetic and surgical manipulations. SUMMARY In the light of these new developments in interventional radiology there is much research to be done. Further developments in imaging and computer processing technology will doubtless make possible the real time integration of anatomical image with metabolic state and functional anatomy. The impact of the hazards of these new techniques on the safety of anesthesia has, however, been the subject of virtually no research. A particularly needy area will be the ergonomics of the delivery of anesthesia care in these new environments.
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Larson AC, Simonetti OP. Real-time cardiac cine imaging with SPIDER: steady-state projection imaging with dynamic echo-train readout. Magn Reson Med 2001; 46:1059-66. [PMID: 11746569 DOI: 10.1002/mrm.1299] [Citation(s) in RCA: 45] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Abstract
Steady-state projection imaging with dynamic echo-train readout (SPIDER) is a multiecho radial k-space trajectory TrueFISP sequence developed for real-time cine imaging of the heart. This new pulse sequence combines the superior SNR and blood-to-myocardium contrast of TrueFISP with the increased scan time efficiency of EPI and undersampled projection reconstruction. SPIDER sequence RF repetition time (TR) was minimized by limiting the echo-train to a length of three while acquiring the first and third echoes asymmetrically. A temporal resolution of 45 ms was achieved with TR/TE1/TE2/TE3 of 3.24/0.6/1.6/2.6 ms and a factor of 2 view sharing scheme. Phantom experiments showed little difference between the weighting of the signals acquired at each of the echo times but did show considerable off-resonance modulation between them. In vivo experiments demonstrated the feasibility of using the SPIDER sequence for real-time imaging in the cardiac short axis orientation.
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Affiliation(s)
- A C Larson
- Department of Biomedical Engineering, Northwestern University, Chicago, Illinois,, USA.
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Merrifield R, Keegan J, Firmin D, Yang GZ. Dual contrast TrueFISP imaging for left ventricular segmentation. Magn Reson Med 2001; 46:939-45. [PMID: 11675646 DOI: 10.1002/mrm.1280] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Abstract
Based on varying tissue contrasts at different RF flip angles, a new TrueFISP imaging strategy for cardiac function measurement is presented. A single breath-hold dual RF flip angle cine multi-slice TrueFISP imaging sequence was implemented which provides a significant increase in signal contrast between blood and myocardium. The increase in image contrast combined with different characteristics in RF response facilitates the delineation of cardiovascular borders. Based on this imaging strategy it is demonstrated how a simple 2D histogram clustering algorithm can be used for the fully automatic segmentation of the left ventricular (LV) blood pool. The method is validated with data acquired from 10 asymptomatic subjects, and the results are shown to be comparable to that of manual delineation by experienced observers.
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Affiliation(s)
- R Merrifield
- Royal Society/Wolfson Foundation MIC Laboratory, Imperial College of Science, Technology and Medicine, London, UK
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Fain SB, Riederer SJ, Huston J, King BF. Embedded MR fluoroscopy: high temporal resolution real-time imaging during high spatial resolution 3D MRA acquisition. Magn Reson Med 2001; 46:690-8. [PMID: 11590645 DOI: 10.1002/mrm.1247] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
A method termed "embedded fluoroscopy" for simultaneously acquiring a real-time sequence of 2D images during acquisition of a 3D image is presented. The 2D images are formed by periodically sampling the central phase encodes of the slab-select direction during the 3D acquisition. The tradeoffs in spatial and temporal resolution are quantified by two parameters: the "redundancy" (R), the fraction of the 3D acquisition sampled more than once; and the "effective temporal resolution" (T), the time between temporal updates of the central views. The method is applied to contrast-enhanced MR angiography (CE-MRA). The contrast bolus dynamics are portrayed in real time in the 2D image sequence while a high-resolution 3D image is being acquired. The capability of the 2D acquisition to measure contrast enhancement with only a 5% degradation of the spatial resolution of the 3D CE-MR angiogram is shown theoretically. The method is tested clinically in 15 CE-MRA patient studies of the carotid and renal arteries.
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Affiliation(s)
- S B Fain
- Department of Medical Physics, Clinical Sciences Center, University of Wisconsin-Madison, Madison, Wisconsin 53792, USA.
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Abstract
While spoiled gradient echo sequences provide a rapid means of acquiring T(1)-weighted images, it is often desirable that the magnetization be in the steady state to avoid artifacts. For some applications, this requires many "dummy" repetitions of the pulse sequence prior to data collection, delaying image acquisition. A method is presented in which a saturation pulse, followed by a prescribed recovery period, places longitudinal magnetization levels of all materials near steady state, ready for data acquisition much sooner than when employing only dummy repetitions to achieve steady state. Effects of transverse coherences are studied using configuration theory. The method is shown to be effective in both phantom studies and in vivo applications, including real-time imaging, multiphase cardiac imaging, and triggered contrast-enhanced angiography. Magn Reson Med 45:653-661, 2001.
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Affiliation(s)
- R F Busse
- Magnetic Resonance Laboratory, Mayo Clinic, Rochester, Minnesota, USA
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Fahrig R, Butts K, Rowlands JA, Saunders R, Stanton J, Stevens GM, Daniel BL, Wen Z, Ergun DL, Pelc NJ. A truly hybrid interventional MR/X-ray system: feasibility demonstration. J Magn Reson Imaging 2001; 13:294-300. [PMID: 11169837 DOI: 10.1002/1522-2586(200102)13:2<294::aid-jmri1042>3.0.co;2-x] [Citation(s) in RCA: 56] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023] Open
Abstract
A system enabling both x-ray fluoroscopy and MRI in a single exam, without requiring patient repositioning, would be a powerful tool for image-guided interventions. We studied the technical issues related to acquisition of x-ray images inside an open MRI system (GE Signa SP). The system includes a flat-panel x-ray detector (GE Medical Systems) placed under the patient bed, a fixed-anode x-ray tube overhead with the anode-cathode axis aligned with the main magnetic field and a high-frequency x-ray generator (Lunar Corp.). New challenges investigated related to: 1) deflection and defocusing of the electron beam of the x-ray tube; 2) proper functioning of the flat panel; 3) effects on B0 field homogeneity; and 4) additional RF noise in the MR images. We have acquired high-quality x-ray and MR images without repositioning the object using our hybrid system, which demonstrates the feasibility of this new configuration. Further work is required to ensure that the highest possible image quality is achieved with both MR and x-ray modalities.
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Affiliation(s)
- R Fahrig
- Department of Radiology, Stanford University, Stanford, California 94305-5488, USA.
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Fahrig R, Butts K, Rowlands JA, Saunders R, Stanton J, Stevens GM, Daniel BL, Wen Z, Ergun DL, Pelc NJ. A truly hybrid interventional MR/X-ray system: Feasibility demonstration. J Magn Reson Imaging 2001. [DOI: 10.1002/1522-2586(200102)13:2%3c294::aid-jmri1042%3e3.0.co;2-x] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022] Open
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Abstract
Imaging algorithms in congenital heart disease, as in the patient with acquired heart diseases continue to evolve, with more and more information gleaned noninvasively. The emphasis will be on the newer aspects of imaging, not cross sectional echocardiography with color Doppler.
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Affiliation(s)
- J Russell
- Department of Pediatrics, The Hospital for Sick Children, Toronto, Ontario, Canada
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Riederer SJ, Bernstein MA, Breen JF, Busse RF, Ehman RL, Fain SB, Hulshizer TC, Huston J, King BF, Kruger DG, Rossman PJ, Shah S. Three-dimensional contrast-enhanced MR angiography with real-time fluoroscopic triggering: design specifications and technical reliability in 330 patient studies. Radiology 2000; 215:584-93. [PMID: 10796943 DOI: 10.1148/radiology.215.2.r00ma21584] [Citation(s) in RCA: 104] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
Technical reliability was determined for triggering three-dimensional (3D) contrast material-enhanced magnetic resonance (MR) angiography with MR fluoroscopy. Technical requirements for high reliability were also identified. Reliability was evaluated in 330 consecutive patient studies of the neck, thorax, abdomen, and pelvis. Contrast material arrival was detected fluoroscopically in 325 of the 330 studies (98.5%), and the 3D sequence was successfully triggered in 321 of 330 studies (97.3%). Fluoroscopic triggering of centrically encoded 3D MR angiographic acquisitions is a highly reliable means of obtaining 3D MR angiograms with high spatial resolution.
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Affiliation(s)
- S J Riederer
- Department of Radiology, MR Laboratory, Mayo Clinic, 200 First St SW, Rochester, MN 55905, USA.
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