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Alotaibi N, Cheung M, Shah A, Hurst JR, Mani AR, Mandal S. Changes in physiological signal entropy in patients with obstructive sleep apnoea: a systematic review. Physiol Meas 2024; 45:095010. [PMID: 39260403 DOI: 10.1088/1361-6579/ad79b4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2024] [Accepted: 09/11/2024] [Indexed: 09/13/2024]
Abstract
Background and Objective.Obstructive sleep apnoea (OSA) affects an estimated 936 million people worldwide, yet only 15% receive a definitive diagnosis. Diagnosis of OSA poses challenges due to the dynamic nature of physiological signals such as oxygen saturation (SpO2) and heart rate variability (HRV). Linear analysis methods may not fully capture the irregularities present in these signals. The application of entropy of routine physiological signals offers a promising method to better measure variabilities in dynamic biological data. This review aims to explore entropy changes in physiological signals among individuals with OSA.Approach.Keyword and title searches were performed on Medline, Embase, Scopus, and CINAHL databases. Studies had to analyse physiological signals in OSA using entropy. Quality assessment used the Newcastle-Ottawa Scale. Evidence was qualitatively synthesised, considering entropy signals, entropy type, and time-series length.Main results.Twenty-two studies were included. Multiple physiological signals related to OSA, including SpO2, HRV, and the oxygen desaturation index (ODI), have been investigated using entropy. Results revealed a significant decrease in HRV entropy in those with OSA compared to control groups. Conversely, SpO2and ODI entropy values were increased in OSA. Despite variations in entropy types, time scales, and data extraction devices, studies using receiver operating characteristic curves demonstrated a high discriminative accuracy (>80% AUC) in distinguishing OSA patients from control groups.Significance. This review highlights the potential of SpO2entropy analysis in developing new diagnostic indices for patients with OSA. Further investigation is needed before applying this technique clinically.
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Affiliation(s)
- Nawal Alotaibi
- UCL Respiratory, University College London, London, United Kingdom
- Prince Sultan Military College of Health Sciences, Dhahran, Saudi Arabia
| | - Maggie Cheung
- Royal Free London NHS Foundation Trust, London, United Kingdom
| | - Amar Shah
- UCL Respiratory, University College London, London, United Kingdom
- Royal Free London NHS Foundation Trust, London, United Kingdom
| | - John R Hurst
- UCL Respiratory, University College London, London, United Kingdom
- Royal Free London NHS Foundation Trust, London, United Kingdom
| | - Ali R Mani
- Network Physiology Lab, University College London, London, United Kingdom
| | - Swapna Mandal
- UCL Respiratory, University College London, London, United Kingdom
- Royal Free London NHS Foundation Trust, London, United Kingdom
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Araújo NS, Reyes-Garcia SZ, Brogin JAF, Bueno DD, Cavalheiro EA, Scorza CA, Faber J. Chaotic and stochastic dynamics of epileptiform-like activities in sclerotic hippocampus resected from patients with pharmacoresistant epilepsy. PLoS Comput Biol 2022; 18:e1010027. [PMID: 35417449 PMCID: PMC9037954 DOI: 10.1371/journal.pcbi.1010027] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2021] [Revised: 04/25/2022] [Accepted: 03/16/2022] [Indexed: 11/30/2022] Open
Abstract
The types of epileptiform activity occurring in the sclerotic hippocampus with highest incidence are interictal-like events (II) and periodic ictal spiking (PIS). These activities are classified according to their event rates, but it is still unclear if these rate differences are consequences of underlying physiological mechanisms. Identifying new and more specific information related to these two activities may bring insights to a better understanding about the epileptogenic process and new diagnosis. We applied Poincaré map analysis and Recurrence Quantification Analysis (RQA) onto 35 in vitro electrophysiological signals recorded from slices of 12 hippocampal tissues surgically resected from patients with pharmacoresistant temporal lobe epilepsy. These analyzes showed that the II activity is related to chaotic dynamics, whereas the PIS activity is related to deterministic periodic dynamics. Additionally, it indicates that their different rates are consequence of different endogenous dynamics. Finally, by using two computational models we were able to simulate the transition between II and PIS activities. The RQA was applied to different periods of these simulations to compare the recurrences between artificial and real signals, showing that different ranges of regularity-chaoticity can be directly associated with the generation of PIS and II activities. Temporal lobe epilepsy (TLE) is the most prevalent type of epilepsy in adults and hippocampal sclerosis is the major pathophysiological substrate of pharmaco-refractory TLE. Different patterns of epileptiform-like activity have been described in human hippocampal sclerosis, but the standard analysis applied to characterize the activities usually do not consider the nonlinear features that epileptiform patterns exhibit. Here, using Poincaré map and Recurrence Quantitative Analysis we characterized the most prevalent type of epileptiform-like activities—interictal-like events (II) and periodic ictal spiking (PIS), recorded in vitro from resected hippocampi of pharmacoresistant patients with TLE—according to their levels of stochasticity, chaoticity and determinism. The II activities showed to be more chaotic with complex rhythmicity than PIS activities. The nonlinear dynamic differences between II and PIS leads us to conjecture that they are expressions of different seizure susceptibility. We also identified that each hippocampal subfield expresses II and PIS activities in a specific and different way. Finally, from the modulation of internal parameters of two computational models, we show the conversion of one type of activity into the other, showing how specific neuron networks synchronize over time, leading to II and PIS activities and then into a generalized seizure.
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Affiliation(s)
- Noemi S. Araújo
- Department of Neurology and Neurosurgery, Federal University of São Paulo (UNIFESP), São Paulo, São Paulo, Brazil
| | - Selvin Z. Reyes-Garcia
- Departamento de Ciencias Morfológicas, Facultad de Ciencias Médicas, Universidad Nacional Autónoma de Honduras, Tegucigalpa, Honduras
| | - João A. F. Brogin
- Department of Mechanical Engineering, São Paulo State University (UNESP), School of Engineering of Ilha Solteira, Ilha Solteira, São Paulo, Brazil
| | - Douglas D. Bueno
- Department of Mathematics, São Paulo State University (UNESP), School of Engineering of Ilha Solteira, Ilha Solteira, São Paulo, Brazil
| | - Esper A. Cavalheiro
- Department of Neurology and Neurosurgery, Federal University of São Paulo (UNIFESP), São Paulo, São Paulo, Brazil
| | - Carla A. Scorza
- Department of Neurology and Neurosurgery, Federal University of São Paulo (UNIFESP), São Paulo, São Paulo, Brazil
| | - Jean Faber
- Department of Neurology and Neurosurgery, Federal University of São Paulo (UNIFESP), São Paulo, São Paulo, Brazil
- * E-mail:
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A novel approach for detection of consciousness level in comatose patients from EEG signals with 1-D convolutional neural network. Biocybern Biomed Eng 2022. [DOI: 10.1016/j.bbe.2021.11.003] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
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Mayor D, Panday D, Kandel HK, Steffert T, Banks D. CEPS: An Open Access MATLAB Graphical User Interface (GUI) for the Analysis of Complexity and Entropy in Physiological Signals. ENTROPY 2021; 23:e23030321. [PMID: 33800469 PMCID: PMC7998823 DOI: 10.3390/e23030321] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/31/2020] [Revised: 02/28/2021] [Accepted: 03/03/2021] [Indexed: 12/14/2022]
Abstract
BACKGROUND We developed CEPS as an open access MATLAB® GUI (graphical user interface) for the analysis of Complexity and Entropy in Physiological Signals (CEPS), and demonstrate its use with an example data set that shows the effects of paced breathing (PB) on variability of heart, pulse and respiration rates. CEPS is also sufficiently adaptable to be used for other time series physiological data such as EEG (electroencephalography), postural sway or temperature measurements. METHODS Data were collected from a convenience sample of nine healthy adults in a pilot for a larger study investigating the effects on vagal tone of breathing paced at various different rates, part of a development programme for a home training stress reduction system. RESULTS The current version of CEPS focuses on those complexity and entropy measures that appear most frequently in the literature, together with some recently introduced entropy measures which may have advantages over those that are more established. Ten methods of estimating data complexity are currently included, and some 28 entropy measures. The GUI also includes a section for data pre-processing and standard ancillary methods to enable parameter estimation of embedding dimension m and time delay τ ('tau') where required. The software is freely available under version 3 of the GNU Lesser General Public License (LGPLv3) for non-commercial users. CEPS can be downloaded from Bitbucket. In our illustration on PB, most complexity and entropy measures decreased significantly in response to breathing at 7 breaths per minute, differentiating more clearly than conventional linear, time- and frequency-domain measures between breathing states. In contrast, Higuchi fractal dimension increased during paced breathing. CONCLUSIONS We have developed CEPS software as a physiological data visualiser able to integrate state of the art techniques. The interface is designed for clinical research and has a structure designed for integrating new tools. The aim is to strengthen collaboration between clinicians and the biomedical community, as demonstrated here by using CEPS to analyse various physiological responses to paced breathing.
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Affiliation(s)
- David Mayor
- School of Health and Social Work, University of Hertfordshire, Hatfield AL10 9AB, UK
- Correspondence:
| | - Deepak Panday
- School of Engineering and Computer Science, University of Hertfordshire, Hatfield AL10 9AB, UK;
| | - Hari Kala Kandel
- Department of Computing, Goldsmiths College, University of London, New Cross, London SE14 6NW, UK;
| | - Tony Steffert
- MindSpire, Napier House, 14-16 Mount Ephraim Rd, Tunbridge Wells TN1 1EE, UK;
- School of Life, Health and Chemical Sciences, Walton Hall, The Open University, Milton Keynes MK7 6AA, UK;
| | - Duncan Banks
- School of Life, Health and Chemical Sciences, Walton Hall, The Open University, Milton Keynes MK7 6AA, UK;
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Alagumariappan P, Krishnamurthy K, Kandiah S, Cyril E, V R. Diagnosis of Type 2 Diabetes Using Electrogastrograms: Extraction and Genetic Algorithm–Based Selection of Informative Features. JMIR BIOMEDICAL ENGINEERING 2020. [DOI: 10.2196/20932] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022] Open
Abstract
Background
Electrogastrography is a noninvasive electrophysiological procedure used to measure gastric myoelectrical activity. EGG methods have been used to investigate the mechanisms of the human digestive system and as a clinical tool. Abnormalities in gastric myoelectrical activity have been observed in subjects with diabetes.
Objective
The objective of this study was to use the electrogastrograms (EGGs) from healthy individuals and subjects with diabetes to identify potentially informative features for the diagnosis of diabetes using EGG signals.
Methods
A total of 30 features were extracted from the EGGs of 30 healthy individuals and 30 subjects with diabetes. Of these, 20 potentially informative features were selected using a genetic algorithm–based feature selection process. The selected features were analyzed for further classification of EGG signals from healthy individuals and subjects with diabetes.
Results
This study demonstrates that there are distinct variations between the EGG signals recorded from healthy individuals and those from subjects with diabetes. Furthermore, the study reveals that the features Maragos fractal dimension and Hausdorff box-counting fractal dimension have a high degree of correlation with the mobility of EGGs from healthy individuals and subjects with diabetes.
Conclusions
Based on the analysis on the extracted features, the selected features are suitable for the design of automated classification systems to identify healthy individuals and subjects with diabetes.
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Khanmohammadi S, Laurido-Soto O, Eisenman LN, Kummer TT, Ching S. Intrinsic network reactivity differentiates levels of consciousness in comatose patients. Clin Neurophysiol 2018; 129:2296-2305. [PMID: 30240976 PMCID: PMC6202231 DOI: 10.1016/j.clinph.2018.08.004] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2018] [Revised: 08/13/2018] [Accepted: 08/23/2018] [Indexed: 12/14/2022]
Abstract
OBJECTIVE We devise a data-driven framework to assess the level of consciousness in etiologically heterogeneous comatose patients using intrinsic dynamical changes of resting-state Electroencephalogram (EEG) signals. METHODS EEG signals were collected from 54 comatose patients (GCS ⩽ 8) and 20 control patients (GCS > 8). We analyzed the EEG signals using a new technique, termed Intrinsic Network Reactivity Index (INRI), that aims to assess the overall lability of brain dynamics without the use of extrinsic stimulation. The proposed technique uses three sigma EEG events as a trigger for ensuing changes to the directional derivative of signals across the EEG montage. RESULTS The INRI had a positive relationship with GCS and was significantly different between various levels of consciousness. In comparison, classical band-limited power analysis did not show any specific patterns correlated to GCS. CONCLUSIONS These findings suggest that reaching low variance EEG activation patterns becomes progressively harder as the level of consciousness of patients deteriorate, and provide a quantitative index based on passive measurements that characterize this change. SIGNIFICANCE Our results emphasize the role of intrinsic brain dynamics in assessing the level of consciousness in coma patients and the possibility of employing simple electrophysiological measures to recognize the severity of disorders of consciousness (DOC).
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Affiliation(s)
- Sina Khanmohammadi
- Department of Electrical & Systems Engineering, Washington University in St. Louis, St. Louis, MO 63130, USA; Department of Neurology, Washington University School of Medicine, St. Louis, MO 63110, USA.
| | - Osvaldo Laurido-Soto
- Department of Neurology, Washington University School of Medicine, St. Louis, MO 63110, USA.
| | - Lawrence N Eisenman
- Department of Neurology, Washington University School of Medicine, St. Louis, MO 63110, USA.
| | - Terrance T Kummer
- Department of Neurology, Washington University School of Medicine, St. Louis, MO 63110, USA.
| | - ShiNung Ching
- Department of Electrical & Systems Engineering, Washington University in St. Louis, St. Louis, MO 63130, USA; Department of Biomedical Engineering, Washington University in St. Louis, St. Louis, MO 63130, USA; Division of Biology and Biomedical Science, Washington University in St. Louis, St. Louis, MO 63130, USA.
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Sun S, Jin Y, Chen C, Sun B, Cao Z, Lo IL, Zhao Q, Zheng J, Shi Y, Zhang XD. Entropy Change of Biological Dynamics in Asthmatic Patients and Its Diagnostic Value in Individualized Treatment: A Systematic Review. ENTROPY (BASEL, SWITZERLAND) 2018; 20:E402. [PMID: 33265493 PMCID: PMC7512921 DOI: 10.3390/e20060402] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/16/2018] [Revised: 04/12/2018] [Accepted: 04/23/2018] [Indexed: 12/21/2022]
Abstract
Asthma is a chronic respiratory disease featured with unpredictable flare-ups, for which continuous lung function monitoring is the key for symptoms control. To find new indices to individually classify severity and predict disease prognosis, continuous physiological data collected from monitoring devices is being studied from different perspectives. Entropy, as an analysis method for quantifying the inner irregularity of data, has been widely applied in physiological signals. However, based on our knowledge, there is no such study to summarize the complexity differences of various physiological signals in asthmatic patients. Therefore, we organized a systematic review to summarize the complexity differences of important signals in patients with asthma. We searched several medical databases and systematically reviewed existing asthma clinical trials in which entropy changes in physiological signals were studied. As a conclusion, we find that, for airflow, heart rate variability, center of pressure and respiratory impedance, their entropy values decrease significantly in asthma patients compared to those of healthy people, while, for respiratory sound and airway resistance, their entropy values increase along with the progression of asthma. Entropy of some signals, such as respiratory inter-breath interval, shows strong potential as novel indices of asthma severity. These results will give valuable guidance for the utilization of entropy in physiological signals. Furthermore, these results should promote the development of management and diagnosis of asthma using continuous monitoring data in the future.
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Affiliation(s)
- Shixue Sun
- Faculty of Health Sciences, University of Macau, Taipa, Macau, China
| | - Yu Jin
- Faculty of Health Sciences, University of Macau, Taipa, Macau, China
| | - Chang Chen
- Faculty of Health Sciences, University of Macau, Taipa, Macau, China
| | - Baoqing Sun
- State Key Laboratory of Respiratory Disease, the 1st Affiliated Hospital of Guangzhou Medical University, Guangzhou 510230, China
| | - Zhixin Cao
- Beijing Engineering Research Center of Diagnosis and Treatment of Respiratory and Critical Care Medicine, Beijing Chaoyang Hospital, Beijing 100043, China
| | - Iek Long Lo
- Department of Geriatrics, Centro Hospital Conde de Sao Januario, Macau, China
| | - Qi Zhao
- Faculty of Health Sciences, University of Macau, Taipa, Macau, China
| | - Jun Zheng
- Faculty of Health Sciences, University of Macau, Taipa, Macau, China
| | - Yan Shi
- Department of Mechanical and Electronic Engineering, Beihang University, Beijing 100191, China
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DiNuzzo M, Mascali D, Moraschi M, Bussu G, Maraviglia B, Mangia S, Giove F. Temporal Information Entropy of the Blood-Oxygenation Level-Dependent Signals Increases in the Activated Human Primary Visual Cortex. FRONTIERS IN PHYSICS 2017; 5:7. [PMID: 28451586 PMCID: PMC5404702 DOI: 10.3389/fphy.2017.00007] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
Time-domain analysis of blood-oxygenation level-dependent (BOLD) signals allows the identification of clusters of voxels responding to photic stimulation in primary visual cortex (V1). However, the characterization of information encoding into temporal properties of the BOLD signals of an activated cluster is poorly investigated. Here, we used Shannon entropy to determine spatial and temporal information encoding in the BOLD signal within the most strongly activated area of the human visual cortex during a hemifield photic stimulation. We determined the distribution profile of BOLD signals during epochs at rest and under stimulation within small (19-121 voxels) clusters designed to include only voxels driven by the stimulus as highly and uniformly as possible. We found consistent and significant increases (2-4% on average) in temporal information entropy during activation in contralateral but not ipsilateral V1, which was mirrored by an expected loss of spatial information entropy. These opposite changes coexisted with increases in both spatial and temporal mutual information (i.e., dependence) in contralateral V1. Thus, we showed that the first cortical stage of visual processing is characterized by a specific spatiotemporal rearrangement of intracluster BOLD responses. Our results indicate that while in the space domain BOLD maps may be incapable of capturing the functional specialization of small neuronal populations due to relatively low spatial resolution, some information encoding may still be revealed in the temporal domain by an increase of temporal information entropy.
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Affiliation(s)
- Mauro DiNuzzo
- Division of Glial Disease and Therapeutics, Faculty of Health and Medical Sciences, Center for Basic and Translational Neuroscience, University of Copenhagen, Copenhagen, Denmark
- Museo Storico della Fisica e Centro Studi e Ricerche Enrico Fermi, Rome, Italy
| | - Daniele Mascali
- Museo Storico della Fisica e Centro Studi e Ricerche Enrico Fermi, Rome, Italy
| | - Marta Moraschi
- Museo Storico della Fisica e Centro Studi e Ricerche Enrico Fermi, Rome, Italy
- Fondazione Santa Lucia (IRCCS), Rome, Italy
| | - Giorgia Bussu
- Museo Storico della Fisica e Centro Studi e Ricerche Enrico Fermi, Rome, Italy
| | - Bruno Maraviglia
- Museo Storico della Fisica e Centro Studi e Ricerche Enrico Fermi, Rome, Italy
- Fondazione Santa Lucia (IRCCS), Rome, Italy
| | - Silvia Mangia
- Department of Radiology, Center for Magnetic Resonance Research, University of Minnesota, Minneapolis, MN, USA
| | - Federico Giove
- Museo Storico della Fisica e Centro Studi e Ricerche Enrico Fermi, Rome, Italy
- Fondazione Santa Lucia (IRCCS), Rome, Italy
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Cao J, Watabe D, Zhang L. An EEG diagnosis system for quasi brain death based on complexity and energy analyses. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2015; 2013:7132-5. [PMID: 24111389 DOI: 10.1109/embc.2013.6611202] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Abstract
Electroencephalogram (EEG) is often used in confirmatory test for brain death determination in clinical practice. Because the EEG measuring and monitoring is relatively safe and reliable for deep comatose patients, it is believed to be valuable for reducing the risk of diagnosis or prevent mistaken diagnosis of brain death. In this paper, we present EEG complexity analysis and EEG energy analyses for the EEG acquisition of 35 adult patients. In EEG complexity analysis, we firstly report statistically significant differences of quantitative statistics in this clinical study. Next, for the patient-wise case study, we develop a dynamical calculating entropy method to monitor the symptom change of patients. In EEG energy analysis, we firstly accumulate the EEG energy from the extracted components that are related to the brain activities. Then, we evaluate the energy differences between deep comatose patients and brain death. The empirical results reported in this paper suggest some promising directions and valuable clues for clinical practice.
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Hu B, Chen Y, Keogh E. Classification of streaming time series under more realistic assumptions. Data Min Knowl Discov 2015. [DOI: 10.1007/s10618-015-0415-0] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Zakaria J, Mueen A, Keogh E, Young N. Accelerating the discovery of unsupervised-shapelets. Data Min Knowl Discov 2015. [DOI: 10.1007/s10618-015-0411-4] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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Wang X, Jiao Y, Tang T, Wang H, Lu Z. Investigating univariate temporal patterns for intrinsic connectivity networks based on complexity and low-frequency oscillation: a test-retest reliability study. Neuroscience 2013; 254:404-26. [PMID: 24042040 DOI: 10.1016/j.neuroscience.2013.09.009] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2013] [Revised: 08/18/2013] [Accepted: 09/04/2013] [Indexed: 11/25/2022]
Abstract
Intrinsic connectivity networks (ICNs) are composed of spatial components and time courses. The spatial components of ICNs were discovered with moderate-to-high reliability. So far as we know, few studies focused on the reliability of the temporal patterns for ICNs based their individual time courses. The goals of this study were twofold: to investigate the test-retest reliability of temporal patterns for ICNs, and to analyze these informative univariate metrics. Additionally, a correlation analysis was performed to enhance interpretability. Our study included three datasets: (a) short- and long-term scans, (b) multi-band echo-planar imaging (mEPI), and (c) eyes open or closed. Using dual regression, we obtained the time courses of ICNs for each subject. To produce temporal patterns for ICNs, we applied two categories of univariate metrics: network-wise complexity and network-wise low-frequency oscillation. Furthermore, we validated the test-retest reliability for each metric. The network-wise temporal patterns for most ICNs (especially for default mode network, DMN) exhibited moderate-to-high reliability and reproducibility under different scan conditions. Network-wise complexity for DMN exhibited fair reliability (ICC<0.5) based on eyes-closed sessions. Specially, our results supported that mEPI could be a useful method with high reliability and reproducibility. In addition, these temporal patterns were with physiological meanings, and certain temporal patterns were correlated to the node strength of the corresponding ICN. Overall, network-wise temporal patterns of ICNs were reliable and informative and could be complementary to spatial patterns of ICNs for further study.
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Affiliation(s)
- X Wang
- School of Biological Science and Medical Engineering, Southeast University, Nanjing 210096, China; Key Laboratory of Child Development and Learning Science (Ministry of Education), Southeast University, Nanjing 210096, China
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Siebenhühner F, Weiss SA, Coppola R, Weinberger DR, Bassett DS. Intra- and inter-frequency brain network structure in health and schizophrenia. PLoS One 2013; 8:e72351. [PMID: 23991097 PMCID: PMC3753323 DOI: 10.1371/journal.pone.0072351] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2013] [Accepted: 07/08/2013] [Indexed: 01/22/2023] Open
Abstract
Empirical studies over the past two decades have provided support for the hypothesis that schizophrenia is characterized by altered connectivity patterns in functional brain networks. These alterations have been proposed as genetically mediated diagnostic biomarkers and are thought to underlie altered cognitive functions such as working memory. However, the nature of this dysconnectivity remains far from understood. In this study, we perform an extensive analysis of functional connectivity patterns extracted from MEG data in 14 subjects with schizophrenia and 14 healthy controls during a 2-back working memory task. We investigate uni-, bi- and multivariate properties of sensor time series by computing wavelet entropy of and correlation between time series, and by constructing binary networks of functional connectivity both within and between classical frequency bands ([Formula: see text], [Formula: see text], [Formula: see text], and [Formula: see text]). Networks are based on the mutual information between wavelet time series, and estimated for each trial window separately, enabling us to consider both network topology and network dynamics. We observed significant decreases in time series entropy and significant increases in functional connectivity in the schizophrenia group in comparison to the healthy controls and identified an inverse relationship between these measures across both subjects and sensors that varied over frequency bands and was more pronounced in controls than in patients. The topological organization of connectivity was altered in schizophrenia specifically in high frequency [Formula: see text] and [Formula: see text] band networks as well as in the [Formula: see text]-[Formula: see text] cross-frequency networks. Network topology varied over trials to a greater extent in patients than in controls, suggesting disease-associated alterations in dynamic network properties of brain function. Our results identify signatures of aberrant neurophysiological behavior in schizophrenia across uni-, bi- and multivariate scales and lay the groundwork for further clinical studies that might lead to the discovery of new intermediate phenotypes.
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Affiliation(s)
- Felix Siebenhühner
- Department of Physics, University of California Santa Barbara, Santa Barbara, California, United States of America
- Neuroscience Center, University of Helsinki, Helsinki, Finland
| | - Shennan A. Weiss
- Department of Neurology, Columbia University, New York, New York, United States of America
| | - Richard Coppola
- MEG Core Facility, National Institute of Mental Health, Bethesda, Maryland, United States of America
| | - Daniel R. Weinberger
- Genes, Cognition and Psychosis Program, Clinical Brain Disorders Branch, National Institute of Mental Health, Bethesda, Maryland, United States of America
- Lieber Institute for Brain Development, Johns Hopkins Medical Campus, Baltimore, Maryland, United States of America
| | - Danielle S. Bassett
- Department of Physics, University of California Santa Barbara, Santa Barbara, California, United States of America
- Sage Center for the Study of the Mind, University of California Santa Barbara, Santa Barbara, California, United States of America
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Chung CC, Kang JH, Yuan RY, Wu D, Chen CC, Chi NF, Chen PC, Hu CJ. Multiscale entropy analysis of electroencephalography during sleep in patients with Parkinson disease. Clin EEG Neurosci 2013; 44:221-6. [PMID: 23545244 DOI: 10.1177/1550059412475066] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
Sleep disorders are frequently seen in patients with Parkinson disease (PD), including rapid eye movement (REM) behavior disorder and periodic limb movement disorder. However, knowledge about changes in non-REM sleep in patients with PD is limited. This study explored the characteristics of electroencephalography (EEG) during sleep in patients with PD and non-PD controls. We further conducted multiscale entropy (MSE) analysis to evaluate and compare the complexity of sleep EEG for the 2 groups. There were 9 patients with PD (Hoehn-Yahr stage 1 or 2) and 11 non-PD controls. All participants underwent standard whole-night polysomnography (PSG), which included 23 channels, 6 of which were for EEG. The raw data of the EEG were extracted and subjected to MSE analysis. Patients with PD had a longer sleep onset time and a higher spontaneous EEG arousal index. Sleep stage-specific increased MSE was observed in patients with PD during non-REM sleep. The difference was more marked and significant at higher time scale factors (TSFs). In conclusion, increased biosignal complexity, as revealed by MSE analysis, was found in patients with PD during non-REM sleep at high TSFs. This finding might reflect a compensatory mechanism for early defects in neuronal network control machinery in PD.
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Affiliation(s)
- Chen-Chih Chung
- Department of Neurology and Sleep Center, Taipei Medical University, New Taipei, Taiwan
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Approximate Entropy Analysis of Event-Related Potentials in Patients With Early Vascular Dementia. J Clin Neurophysiol 2012; 29:230-6. [DOI: 10.1097/wnp.0b013e318257ca9d] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022] Open
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19
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Bassett DS, Nelson BG, Mueller BA, Camchong J, Lim KO. Altered resting state complexity in schizophrenia. Neuroimage 2011; 59:2196-207. [PMID: 22008374 DOI: 10.1016/j.neuroimage.2011.10.002] [Citation(s) in RCA: 316] [Impact Index Per Article: 22.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2011] [Revised: 09/21/2011] [Accepted: 10/03/2011] [Indexed: 11/30/2022] Open
Abstract
The complexity of the human brain's activity and connectivity varies over temporal scales and is altered in disease states such as schizophrenia. Using a multi-level analysis of spontaneous low-frequency fMRI data stretching from the activity of individual brain regions to the coordinated connectivity pattern of the whole brain, we investigate the role of brain signal complexity in schizophrenia. Specifically, we quantitatively characterize the univariate wavelet entropy of regional activity, the bivariate pairwise functional connectivity between regions, and the multivariate network organization of connectivity patterns. Our results indicate that univariate measures of complexity are less sensitive to disease state than higher level bivariate and multivariate measures. While wavelet entropy is unaffected by disease state, the magnitude of pairwise functional connectivity is significantly decreased in schizophrenia and the variance is increased. Furthermore, by considering the network structure as a function of correlation strength, we find that network organization specifically of weak connections is strongly correlated with attention, memory, and negative symptom scores and displays potential as a clinical biomarker, providing up to 75% classification accuracy and 85% sensitivity. We also develop a general statistical framework for the testing of group differences in network properties, which is broadly applicable to studies where changes in network organization are crucial to the understanding of brain function.
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Affiliation(s)
- Danielle S Bassett
- Complex Systems Group, Department of Physics, University of California, Santa Barbara, CA 93106, United States.
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20
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Chen Z, Cao J, Cao Y, Zhang Y, Gu F, Zhu G, Hong Z, Wang B, Cichocki A. An empirical EEG analysis in brain death diagnosis for adults. Cogn Neurodyn 2008; 2:257-71. [PMID: 19003489 PMCID: PMC2518749 DOI: 10.1007/s11571-008-9047-z] [Citation(s) in RCA: 42] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2007] [Revised: 03/27/2008] [Accepted: 03/30/2008] [Indexed: 11/30/2022] Open
Abstract
Electroencephalogram (EEG) is often used in the confirmatory test for brain death diagnosis in clinical practice. Because EEG recording and monitoring is relatively safe for the patients in deep coma, it is believed to be valuable for either reducing the risk of brain death diagnosis (while comparing other tests such as the apnea) or preventing mistaken diagnosis. The objective of this paper is to study several statistical methods for quantitative EEG analysis in order to help bedside or ambulatory monitoring or diagnosis. We apply signal processing and quantitative statistical analysis for the EEG recordings of 32 adult patients. For EEG signal processing, independent component analysis (ICA) was applied to separate the independent source components, followed by Fourier and time-frequency analysis. For quantitative EEG analysis, we apply several statistical complexity measures to the EEG signals and evaluate the differences between two groups of patients: the subjects in deep coma, and the subjects who were categorized as brain death. We report statistically significant differences of quantitative statistics with real-life EEG recordings in such a clinical study, and we also present interpretation and discussions on the preliminary experimental results.
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Affiliation(s)
- Zhe Chen
- Laboratory for Advanced Brain Signal Processing, RIKEN Brain Science Institute, Wako-shi, Saitama, 351-0198, Japan,
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21
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Chen Z, Cao J. An empirical quantitative EEG analysis for evaluating clinical brain death. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2007; 2007:3880-3883. [PMID: 18002846 DOI: 10.1109/iembs.2007.4353180] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/25/2023]
Abstract
In this paper, we apply qualitative tools and quantitative analysis for the EEG recordings of 23 adult patients. Specifically, independent component analysis (ICA) was applied to separate independent source components, followed by spectrum analysis. In terms of quantitative EEG analysis, we use several complexity measures to evaluate the differences between two groups of patients: the subjects in deep coma, and the subjects who were prejudged as brain death. For the first time, we report statistically significant differences of quantitative statistics in such a clinical study. The empirical results reported in this paper suggest some promising directions and valuable clues for clinical practice.
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Affiliation(s)
- Zhe Chen
- Neuroscience Statistics Research Laboratory, Massachusetts General Hospital, Harvard Medical School, Boston, MA 02114, USA.
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22
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Löfberg L, Jacobson I, Carlsson L. Electrophysiological and antiarrhythmic effects of the novel antiarrhythmic agent AZD7009: a comparison with azimilide and AVE0118 in the acutely dilated right atrium of the rabbit in vitro. ACTA ACUST UNITED AC 2006; 8:549-57. [PMID: 16798770 DOI: 10.1093/europace/eul061] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]
Abstract
AIMS To compare the electrophysiological and antiarrhythmic effects of AZD7009, azimilide, and AVE0118 in the acutely dilated rabbit atria in vitro. METHODS AND RESULTS In the isolated Langendorf-perfused rabbit heart, the atrial effective refractory period (AERP) and the inducibility of atrial fibrillation (AF) were measured at increasing concentrations of AZD7009 (0.1-3 microM), azimilide (0.1-3 microM), and AVE0118 (0.3-10 microM). In separate groups of atria, termination of sustained AF was assessed. In non-dilated atria, the AERP was 82+/-1.3 ms (mean+/-SEM) and AF could not be induced. Dilation significantly reduced the AERP to 49+/-1.0 ms (P<0.001) and 92% of the atria became inducible. Perfusion with AZD7009, azimilide, and AVE0118 concentration-dependently increased the AERP and reduced the AF inducibility. At the highest concentrations of AZD7009, azimilide, and AVE0118, AERP and AF inducibility changed from 50+/-4.5 to 136+/-6.6 ms and 80 to 0% (both P<0.001) from 51+/-3.0 to 105+/-9.9 ms (P<0.001) and 80 to 0% (P<0.01) and from 46+/-2.8 to 85+/-6.0 ms and 90 to 0% (both P<0.001). Restoration of sinus rhythm was seen in 6/6, 5/6, and 5/6 hearts perfused with AZD7009, azimilide, and AVE0118, respectively. CONCLUSION In the dilated rabbit atria, AZD7009, azimilide, and AVE0118 concentration-dependently increased AERP, effectively prevented AF induction, and rapidly restored sinus rhythm.
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Affiliation(s)
- Lena Löfberg
- AstraZeneca R&D Mölndal, Integrative Pharmacology, Pepparedsleden 1, S-431 83 Mölndal, Sweden
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Natarajan K, Acharya U R, Alias F, Tiboleng T, Puthusserypady SK. Nonlinear analysis of EEG signals at different mental states. Biomed Eng Online 2004; 3:7. [PMID: 15023233 PMCID: PMC400247 DOI: 10.1186/1475-925x-3-7] [Citation(s) in RCA: 151] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2003] [Accepted: 03/16/2004] [Indexed: 11/26/2022] Open
Abstract
Background The EEG (Electroencephalogram) is a representative signal containing information about the condition of the brain. The shape of the wave may contain useful information about the state of the brain. However, the human observer can not directly monitor these subtle details. Besides, since bio-signals are highly subjective, the symptoms may appear at random in the time scale. Therefore, the EEG signal parameters, extracted and analyzed using computers, are highly useful in diagnostics. This work discusses the effect on the EEG signal due to music and reflexological stimulation. Methods In this work, nonlinear parameters like Correlation Dimension (CD), Largest Lyapunov Exponent (LLE), Hurst Exponent (H) and Approximate Entropy (ApEn) are evaluated from the EEG signals under different mental states. Results The results obtained show that EEG to become less complex relative to the normal state with a confidence level of more than 85% due to stimulation. Conclusions It is found that the measures are significantly lower when the subjects are under sound or reflexologic stimulation as compared to the normal state. The dimension increases with the degree of the cognitive activity. This suggests that when the subjects are under sound or reflexologic stimuli, the number of parallel functional processes active in the brain is less and the brain goes to a more relaxed state
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Affiliation(s)
| | | | - Fadhilah Alias
- ECE Division, Ngee Ann Polytechnic, 535 Clementi Road, Singapore 599489
| | - Thelma Tiboleng
- ECE Division, Ngee Ann Polytechnic, 535 Clementi Road, Singapore 599489
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24
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de Araujo DB, Tedeschi W, Santos AC, Elias J, Neves UPC, Baffa O. Shannon entropy applied to the analysis of event-related fMRI time series. Neuroimage 2003; 20:311-7. [PMID: 14527591 DOI: 10.1016/s1053-8119(03)00306-9] [Citation(s) in RCA: 35] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022] Open
Abstract
Event-related functional magnetic resonance imaging (ER-fMRI) refers to the blood oxygen level-dependent (BOLD) signal in response to a short stimulus followed by a long period of rest. These paradigms have become more popular in the last few years due to some advantages over standard block techniques. Most of the analysis of the time series generated in such exams is based on a model of specific hemodynamic response function. In this paper we propose a new method for the analysis of ER-fMRI based in a specific aspect of information theory: the entropy of a signal using the Shannon formulation, which makes no assumption about the shape of the response. The results show the ability to discriminate between activated and resting cerebral regions for motor and visual stimuli. Moreover, the results of simulated data show a more stable pattern of the method, if compared to typical algorithms, when the signal to noise ratio decreases.
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Affiliation(s)
- D B de Araujo
- Departamento de Fisica e Matematica, FFCLRP, University of Sao Paulo, Ribeirao Preto, SP, Brazil.
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Abstract
In a previous paper (Proceedings of the World Congress on Neuroinformatics (2001)) the authors applied the so-called Lempel-Ziv complexity to study neural discharges (spike trains) from an information-theoretical point of view. Along with other results, it is shown there that this concept of complexity allows to characterize the responses of primary visual cortical neurons to both random and periodic stimuli. To this aim we modeled the neurons as information sources and the spike trains as messages generated by them. In this paper, we study further consequences of this mathematical approach, this time concerning the number of states of such neuronal information sources. In this context, the state of an information source means an internal degree of freedom (or parameter) which allows outputs with more general stochastic properties, since symbol generation probabilities at every time step may additionally depend on the value of the current state of the neuron. Furthermore, if the source is ergodic and Markovian, the number of states is directly related to the stochastic dependence lag of the source and provides a measure of the autocorrelation of its messages. Here, we find that the number of states of the neurons depends on the kind of stimulus and the type of preparation ( in vivo versus in vitro recordings), thus providing another way of differentiating neuronal responses. In particular, we observed that (for the encoding methods considered) in vitro sources have a higher lag than in vivo sources for periodic stimuli. This supports the conclusion put forward in the paper mentioned above that, for the same kind of stimulus, in vivo responses are more random (hence, more difficult to compress) than in vitro responses and, consequently, the former transmit more information than the latter.
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Affiliation(s)
- J M Amigó
- Operations Research Centre, Miguel Hernández University, Elche, Spain.
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26
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Duann JR, Jung TP, Kuo WJ, Yeh TC, Makeig S, Hsieh JC, Sejnowski TJ. Single-trial variability in event-related BOLD signals. Neuroimage 2002; 15:823-35. [PMID: 11906223 DOI: 10.1006/nimg.2001.1049] [Citation(s) in RCA: 134] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022] Open
Abstract
Most current analysis methods for fMRI data assume a priori knowledge of the time course of the hemodynamic response (HR) to experimental stimuli or events in brain areas of interest. In addition, they typically assume homogeneity of both the HR and the non-HR "noise" signals, both across brain regions and across similar experimental events. When HRs vary unpredictably, from area to area or from trial to trial, an alternative approach is needed. Here, we use Infomax independent component analysis (ICA) to detect and visualize variations in single-trial HRs in event-related fMRI data. Six subjects participated in four fMRI sessions each in which ten bursts of 8-Hz flickering-checkerboard stimulation were presented for 0.5-s (short) or 3-s (long) durations at 30-s intervals. Five axial slices were acquired by a Bruker 3-T magnetic resonance imager at interscan intervals of 500 ms (TR). ICA decomposition of the resulting blood oxygenation level-dependent (BOLD) data from each session produced an independent component active in primary visual cortex (V1) and, in several sessions, another active in medial temporal cortex (MT/V5). Visualizing sets of BOLD response epochs with novel BOLD-image plots demonstrated that component HRs varied substantially and often systematically across trials as well as across sessions, subjects, and brain areas. Contrary to expectation, in four of the six subjects the V1 component HR contained two positive peaks in response to short-stimulus bursts, while components with nearly identical regions of activity in long-stimulus sessions from the same subjects were associated with single-peaked HRs. Thus, ICA combined with BOLD-image visualization can reveal dramatic and unforeseen HR variations not apparent to researchers analyzing their data with event-related response averaging and fixed HR templates.
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Affiliation(s)
- Jeng-Ren Duann
- Computational Neurobiology Laboratory, The Salk Institute for Biological Studies, La Jolla, California 92037, USA
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27
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Gonzalez Andino SL, Grave de Peralta Menendez R, Lantz CM, Blank O, Michel CM, Landis T. Non-stationary distributed source approximation: an alternative to improve localization procedures. Hum Brain Mapp 2001; 14:81-95. [PMID: 11500992 PMCID: PMC6871930 DOI: 10.1002/hbm.1043] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022] Open
Abstract
Localization of the generators of the scalp measured electrical activity is particularly difficult when a large number of brain regions are simultaneously active. In this study, we describe an approach to automatically isolate scalp potential maps, which are simple enough to expect reasonable results after applying a distributed source localization procedure. The isolation technique is based on the time-frequency decomposition of the scalp-measured data by means of a time-frequency representation. The basic rationale behind the approach is that neural generators synchronize during short time periods over given frequency bands for the codification of information and its transmission. Consequently potential patterns specific for certain time-frequency pairs should be simpler than those appearing at single times but for all frequencies. The method generalizes the FFT approximation to the case of distributed source models with non-stationary time behavior. In summary, the non-stationary distributed source approximation aims to facilitate the localization of distributed source patterns acting at specific time and frequencies for non-stationary data such as epileptic seizures and single trial event related potentials. The merits of this approach are illustrated here in the analysis of synthetic data as well as in the localization of the epileptogenic area at seizure onset in patients. It is shown that time and frequency at seizure onset can be precisely detected in the time-frequency domain and those localization results are stable over seizures. The results suggest that the method could also be applied to localize generators in single trial evoked responses or spontaneous activity.
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Affiliation(s)
- S L Gonzalez Andino
- Functional Brain Mapping Laboratory, Neurology Department, University Hospital Geneva, Switzerland.
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