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Salomón-Flores MK, Valdes-García J, Martínez-Otero D, Dorazco-González A. Tri-fluoro-methane-sulfonate salt of 5,10,15,20-tetra-kis-(1-benzyl-pyridin-1-ium-4-yl)-21 H,23 H-porphyrin and its Ca II complex. Acta Crystallogr E Crystallogr Commun 2024; 80:625-629. [PMID: 38845702 PMCID: PMC11151314 DOI: 10.1107/s205698902400447x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2024] [Accepted: 05/13/2024] [Indexed: 06/09/2024]
Abstract
The synthesis, crystallization and characterization of a tri-fluoro-methane-sulfonate salt of 5,10,15,20-tetra-kis-(1-benzyl-pyridin-1-ium-4-yl)-21H,23H-por-phy-rin, C68H54N8 4+·4CF3SO3 -·4H2O, 1·OTf, are reported in this work. The reaction between 5,10,15,20-tetra-kis-(pyridin-4-yl)-21H,23H-porphyrin and benzyl bromide in the presence of 0.1 equiv. of Ca(OH)2 in CH3CN under reflux with an N2 atmosphere and subsequent treatment with silver tri-fluoro-methane-sulfonate (AgOTf) salt produced a red-brown solution. This reaction mixture was filtered and the solvent was allowed to evaporate at room temperature for 3 d to give 1·OTf. Crystal structure determination by single-crystal X-ray diffraction (SCXD) revealed that 1·OTf crystallizes in the space group P21/c. The asymmetric unit contains half a porphyrin mol-ecule, two tri-fluoro-methane-sulfonate anions and two water mol-ecules of crystallization. The macrocycle of tetra-pyrrole moieties is planar and unexpectedly it has coordinated CaII ions in occupational disorder. This CaII ion has only 10% occupancy (C72H61.80Ca0.10F12N8O16S4). The pyridinium rings bonded to methyl-ene groups from porphyrin are located in two different arrangements in almost orthogonal positions between the plane formed by the porphyrin and the pyridinium rings. The crystal structure features cation⋯π inter-actions between the CaII atom and the π-system of the phenyl ring of neighboring mol-ecules. Both tri-fluoro-methane-sulfonate anions are found at the periphery of 1, forming hydrogen bonds with water mol-ecules.
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Affiliation(s)
- María K. Salomón-Flores
- Instituto de Química, Universidad Nacional Autónoma de México, Circuito Exterior, Ciudad Universitaria, Mexico, 04510, D.F., Mexico
| | - Josue Valdes-García
- Instituto de Química, Universidad Nacional Autónoma de México, Circuito Exterior, Ciudad Universitaria, Mexico, 04510, D.F., Mexico
| | - Diego Martínez-Otero
- Instituto de Química, Universidad Nacional Autónoma de México, Circuito Exterior, Ciudad Universitaria, Mexico, 04510, D.F., Mexico
- Centro Conjunto de Investigación en Química Sustentable, UAEM-UNAM, Instituto de Química, Universidad Nacional Autónoma de México, Carretera Toluca-Atlacomulco Km 14.5, CP 50200 Toluca, Estado de México, Mexico
| | - Alejandro Dorazco-González
- Instituto de Química, Universidad Nacional Autónoma de México, Circuito Exterior, Ciudad Universitaria, Mexico, 04510, D.F., Mexico
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Chakraborty R, Talbot JJ, Shen H, Yabuuchi Y, Carsch KM, Jiang HZH, Furukawa H, Long JR, Head-Gordon M. Quantum chemical modeling of hydrogen binding in metal-organic frameworks: validation, insight, predictions and challenges. Phys Chem Chem Phys 2024; 26:6490-6511. [PMID: 38324335 DOI: 10.1039/d3cp05540j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2024]
Abstract
A detailed chemical understanding of H2 interactions with binding sites in the nanoporous crystalline structure of metal-organic frameworks (MOFs) can lay a sound basis for the design of new sorbent materials. Computational quantum chemical calculations can aid in this quest. To set the stage, we review general thermodynamic considerations that control the usable storage capacity of a sorbent. We then discuss cluster modeling of H2 ligation at MOF binding sites using state-of-the-art density functional theory (DFT) calculations, and how the binding can be understood using energy decomposition analysis (EDA). Employing these tools, we illustrate the connections between the character of the MOF binding site and the associated adsorption thermodynamics using four experimentally characterized MOFs, highlighting the role of open metal sites (OMSs) in accessing binding strengths relevant to room temperature storage. The sorbents are MOF-5, with no open metal sites, Ni2(m-dobdc), containing Lewis acidic Ni(II) sites, Cu(I)-MFU-4l, containing π basic Cu(I) sites and V2Cl2.8(btdd), also containing π-basic V(II) sites. We next explore the potential for binding multiple H2 molecules at a single metal site, with thermodynamics useful for storage at ambient temperature; a materials design goal which has not yet been experimentally demonstrated. Computations on Ca2+ or Mg2+ bound to catecholate or Ca2+ bound to porphyrin show the potential for binding up to 4 H2; there is precedent for the inclusion of both catecholate and porphyrin motifs in MOFs. Turning to transition metals, we discuss the prediction that two H2 molecules can bind at V(II)-MFU-4l, a material that has been synthesized with solvent coordinated to the V(II) site. Additional calculations demonstrate binding three equivalents of hydrogen per OMS in Sc(I) or Ti(I)-exchanged MFU-4l. Overall, the results suggest promising prospects for experimentally realizing higher capacity hydrogen storage MOFs, if nontrivial synthetic and desolvation challenges can be overcome. Coupled with the unbounded chemical diversity of MOFs, there is ample scope for additional exploration and discovery.
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Affiliation(s)
- Romit Chakraborty
- Materials Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
- Department of Chemistry, University of California, Berkeley, CA 94720, USA.
| | - Justin J Talbot
- Department of Chemistry, University of California, Berkeley, CA 94720, USA.
| | - Hengyuan Shen
- Department of Chemistry, University of California, Berkeley, CA 94720, USA.
| | - Yuto Yabuuchi
- Materials Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
- Department of Chemistry, University of California, Berkeley, CA 94720, USA.
| | - Kurtis M Carsch
- Department of Chemistry, University of California, Berkeley, CA 94720, USA.
| | - Henry Z H Jiang
- Department of Chemistry, University of California, Berkeley, CA 94720, USA.
| | - Hiroyasu Furukawa
- Materials Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
- Department of Chemistry, University of California, Berkeley, CA 94720, USA.
| | - Jeffrey R Long
- Materials Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
- Department of Chemistry, University of California, Berkeley, CA 94720, USA.
- Department of Chemical and Biomedical Engineering, University of California, Berkeley, CA 94720, USA
| | - Martin Head-Gordon
- Department of Chemistry, University of California, Berkeley, CA 94720, USA.
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
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Stanojević A, Milovanović B, Stanković I, Etinski M, Petković M. The significance of the metal cation in guanine-quartet – metalloporphyrin complexes. Phys Chem Chem Phys 2021; 23:574-584. [DOI: 10.1039/d0cp05798c] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Abstract
The distinct positions of the divalent metal ions with respect to the porphyrin ring are responsible for different interaction energies between metalloporphyrins and the guanine quartet.
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Affiliation(s)
- Ana Stanojević
- University of Belgrade – Faculty of Physical Chemistry
- 11 158 Belgrade
- Serbia
| | | | - Ivana Stanković
- Institute of Chemistry
- Technology and Metallurgy
- 11 000 Belgrade
- Serbia
| | - Mihajlo Etinski
- University of Belgrade – Faculty of Physical Chemistry
- 11 158 Belgrade
- Serbia
| | - Milena Petković
- University of Belgrade – Faculty of Physical Chemistry
- 11 158 Belgrade
- Serbia
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Koepf M, Bergkamp JJ, Teillout AL, Llansola-Portoles MJ, Kodis G, Moore AL, Gust D, Moore TA. Design of porphyrin-based ligands for the assembly of [d-block metal : calcium] bimetallic centers. Dalton Trans 2017; 46:4199-4208. [DOI: 10.1039/c6dt04647a] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A secondary binding-site for alkaline-earth cations is introduced on a porphyrin platform to obtain competent bitopicN,O-ligands.
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Affiliation(s)
- Matthieu Koepf
- School of Molecular Sciences
- Arizona State University
- Tempe
- USA
| | | | | | | | - Gerdenis Kodis
- School of Molecular Sciences
- Arizona State University
- Tempe
- USA
| | - Ana L. Moore
- School of Molecular Sciences
- Arizona State University
- Tempe
- USA
| | - Devens Gust
- School of Molecular Sciences
- Arizona State University
- Tempe
- USA
| | - Thomas A. Moore
- School of Molecular Sciences
- Arizona State University
- Tempe
- USA
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5
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The Bond Analysis Techniques (ELF and Maximum Probability Domains) Application to a Family of Models Relevant to Bio-Inorganic Chemistry. STRUCTURE AND BONDING 2013. [DOI: 10.1007/978-3-642-32750-6_4] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
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Alkorta I, Elguero J, Silva AMS, Tomé AC. A theoretical study of the conformation of meso-tetraphenylporphyrin (TPPH2), its anions, cations and metal complexes (Mg2+, Ca2+ and Zn2+). J PORPHYR PHTHALOCYA 2012. [DOI: 10.1142/s1088424610002409] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
A theoretical study has been carried out on TPPH2 (both tautomers), its deprotonated and protonated forms, as well as complexes of TPP containing Mg 2+, Ca 2+ and Zn 2+ ions. Two properties have been analyzed. The first one considers the conformation of the meso-phenyl rings and the deformation of the porphyrin macrocycle, the second one relates to the barriers of rotation of the meso-phenyl rings (atropisomerism). In the case of the Zn complex ( ZnTPP ), the coordination effects with the N3 of 1H-imidazole have been calculated.
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Affiliation(s)
- Ibon Alkorta
- Instituto de Química Médica (CSIC), Juan de la Cierva 3, 28006 Madrid, Spain
| | - José Elguero
- Instituto de Química Médica (CSIC), Juan de la Cierva 3, 28006 Madrid, Spain
| | - Artur M. S. Silva
- Chemistry Department and QOPNA, University of Aveiro, 3810-193 Aveiro, Portugal
| | - Augusto C. Tomé
- Chemistry Department and QOPNA, University of Aveiro, 3810-193 Aveiro, Portugal
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Yang Y. Effects induced by axial ligands binding to tetrapyrrole-based aromatic metallomacrocycles. J Phys Chem A 2011; 115:9043-54. [PMID: 21755961 DOI: 10.1021/jp204531e] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The axial positions of planar metallomacrocycles are unoccupied. The positively charged metal is thus a potential binding site for electron-donating groups. The binding strength is affected by the central metal, the ligand, and the macrocycle. One ligand leads to the out-of-plane displacement of the central metal, whereas two ligands from two sides structurally neutralize each other. The axial ligand donates charge to the central metal and the macrocycle when the lone pair orients along the interaction axis. The frontier orbital levels are elevated because of the charge donated to the macrocycle. Even though the singlet-triplet gap and the absorption maximum do not change significantly upon binding, the redox chemistry is considerably affected by the shifts of orbital levels. The macrocyclic M-N bonds are weakened by the binding, but their natures remain almost unchanged. Calcium phthalocyanine is a special case, as the central calcium is too large to fit the cavity. Accordingly, multiple ligands facilely bind to the calcium from one side. The aluminum phthalocyanine halogen is another special case, as it has a halogen ligand coordinating to the aluminum through a nondative bond. This leads to some effects different from those caused by dative binding. When there is no considerable steric demand, the lone pair points along the interaction axis to facilitate the donation. When in a stacked dimer, the electron-rich group is part of a large molecule, and the orientation of the lone pair is approximately perpendicular to the interaction axis. This induces the charge loss of the central metal. Because metallomacrocycles are widespread in the biological, medical, and material sciences, the results from this study are expected to bring useful insights to these fields.
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Affiliation(s)
- Yang Yang
- Department of Chemistry, Case Western Reserve University, Cleveland, Ohio 44106, USA.
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Lemon CM, Brothers PJ, Boitrel B. Porphyrin complexes of the period 6 main group and late transition metals. Dalton Trans 2011; 40:6591-609. [PMID: 21384031 DOI: 10.1039/c0dt01711f] [Citation(s) in RCA: 55] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Metalloporphyrin complexes of the period six metals gold, mercury, thallium, lead and bismuth are often overlooked in favour of their lighter congeners. These complexes exhibit unusual coordination geometries, prominently featuring the metal centre residing out the porphyrin plane. Not only are these compounds chemically interesting, but several applications for these complexes are beginning to emerge. Gold and bismuth porphyrins have medicinal applications including novel chemotherapeutics and sensitizers for α-radiotherapy, while gold porphyrins have applications in materials chemistry and catalysis. This perspective serves to highlight trends in the synthesis and structure of these heavy metal complexes as well as illustrate the considerations necessary for rationally designing elaborate porphyrin architectures.
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Affiliation(s)
- Christopher M Lemon
- Department of Chemistry, The University of Auckland, Private Bag 92109, Auckland, 1142, New Zealand
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Abstract
We report here the chemical bonding and aromaticity patterns in metalloporphyrins, which were obtained with density functional theory (DFT) calculations at the OPBE/TZP level. This level of theory was previously shown to be very accurate for determining spin-state splittings [J. Chem. Theory Comput. 2008, 4, 2057] of transition-metal complexes. We considered metalloporphyrins along the first-row transition metals (Sc–Zn) extended with alkaline-earth metals (Mg, Ca) and several second-row transition metals (Ru, Pd, Ag, Cd). An energy decomposition analysis was performed to study the metal–ligand interactions, which showed that almost all complexes are significantly stabilized through (covalent) orbital interactions. The only exception is with calcium as the central metal, which interacts with the porphyrin mainly through electrostatic interactions. Furthermore, we studied aromaticity patterns for these complexes by looking at a number of (structural and electronic) aromaticity descriptors, for both the inner-ring and outer-ring of the porphyrin and of the pyrroles. The inner-ring (N16) aromaticity is shown to be unaffected by metal complexation, while the outer-ring (N20) and the pyrrole (N5) aromaticities are found to increase significantly in the metal coordinated porphyrins.
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Affiliation(s)
- Ferran Feixas
- Institut de Química Computacional and Departament de Química, Universitat de Girona, Campus Montilivi, 17071 Girona, Spain
- Institució Catalana de Recerca i Estudis Avançats (ICREA), 08010 Barcelona, Spain
| | - Miquel Solà
- Institut de Química Computacional and Departament de Química, Universitat de Girona, Campus Montilivi, 17071 Girona, Spain
- Institució Catalana de Recerca i Estudis Avançats (ICREA), 08010 Barcelona, Spain
| | - Marcel Swart
- Institut de Química Computacional and Departament de Química, Universitat de Girona, Campus Montilivi, 17071 Girona, Spain
- Institució Catalana de Recerca i Estudis Avançats (ICREA), 08010 Barcelona, Spain
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Brothers PJ. Boron complexes of porphyrins and related polypyrrole ligands: unexpected chemistry for both boron and the porphyrin. Chem Commun (Camb) 2008:2090-102. [DOI: 10.1039/b714894a] [Citation(s) in RCA: 87] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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12
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Ramón DJ, Yus M. In the arena of enantioselective synthesis, titanium complexes wear the laurel wreath. Chem Rev 2007; 106:2126-208. [PMID: 16771446 DOI: 10.1021/cr040698p] [Citation(s) in RCA: 230] [Impact Index Per Article: 13.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Diego J Ramón
- Instituto de Síntesis Organica and Departamento de Química Organica, Universidad de Alicante, Facultad de Ciencias, Apartado 99, E-03080 Alicante, Spain.
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Vargas W, Ruhlandt‐Senge K. Synthesis, Structures and Characterization of the Calcium Pyrrolates [Ca{(2‐(dimethylaminomethyl)pyrrolyl}
2
donor
n
] (donor = THF and pyridine,
n
= 2; DME and TMEDA,
n
= 1) as Potential Precursors for Solid‐State Applications. Eur J Inorg Chem 2003. [DOI: 10.1002/ejic.200300311] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Wilda Vargas
- Syracuse University, Department of Chemistry, 111 College Place, Rm. 1‐014 Center for Science & Technology, Syracuse, NY 13244‐4100, USA Fax: (internat.) +1‐315/443‐4070
| | - Karin Ruhlandt‐Senge
- Syracuse University, Department of Chemistry, 111 College Place, Rm. 1‐014 Center for Science & Technology, Syracuse, NY 13244‐4100, USA Fax: (internat.) +1‐315/443‐4070
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