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Paul R, Dutta D, Mukhopadhyay TK, Müller D, Lala B, Datta A, Schwalbe H, Dash J. A non-B DNA binding peptidomimetic channel alters cellular functions. Nat Commun 2024; 15:5275. [PMID: 38902227 PMCID: PMC11190219 DOI: 10.1038/s41467-024-49534-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2022] [Accepted: 06/07/2024] [Indexed: 06/22/2024] Open
Abstract
DNA binding transcription factors possess the ability to interact with lipid membranes to construct ion-permeable pathways. Herein, we present a thiazole-based DNA binding peptide mimic TBP2, which forms transmembrane ion channels, impacting cellular ion concentration and consequently stabilizing G-quadruplex DNA structures. TBP2 self-assembles into nanostructures, e.g., vesicles and nanofibers and facilitates the transportation of Na+ and K+ across lipid membranes with high conductance (~0.6 nS). Moreover, TBP2 exhibits increased fluorescence when incorporated into the membrane or in cellular nuclei. Monomeric TBP2 can enter the lipid membrane and localize to the nuclei of cancer cells. The coordinated process of time-dependent membrane or nuclear localization of TBP2, combined with elevated intracellular cation levels and direct G-quadruplex (G4) interaction, synergistically promotes formation and stability of G4 structures, triggering cancer cell death. This study introduces a platform to mimic and control intricate biological functions, leading to the discovery of innovative therapeutic approaches.
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Affiliation(s)
- Raj Paul
- School of Chemical Sciences, Indian Association for the Cultivation of Science, Kolkata, 700032, India
| | - Debasish Dutta
- School of Chemical Sciences, Indian Association for the Cultivation of Science, Kolkata, 700032, India
| | - Titas Kumar Mukhopadhyay
- School of Chemical Sciences, Indian Association for the Cultivation of Science, Kolkata, 700032, India
| | - Diana Müller
- Institute of Organic Chemistry and Chemical Biology, Center for Biomolecular Magnetic Resonance (BMRZ), Goethe, University Frankfurt, Max-von-Laue Strasse 7, 60438, Frankfurt am Main, Germany
| | - Binayak Lala
- School of Chemical Sciences, Indian Association for the Cultivation of Science, Kolkata, 700032, India
| | - Ayan Datta
- School of Chemical Sciences, Indian Association for the Cultivation of Science, Kolkata, 700032, India
| | - Harald Schwalbe
- Institute of Organic Chemistry and Chemical Biology, Center for Biomolecular Magnetic Resonance (BMRZ), Goethe, University Frankfurt, Max-von-Laue Strasse 7, 60438, Frankfurt am Main, Germany
| | - Jyotirmayee Dash
- School of Chemical Sciences, Indian Association for the Cultivation of Science, Kolkata, 700032, India.
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2
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Andrei IM, Chen W, Baaden M, Vincent SP, Barboiu M. Proton- versus Cation-Selective Transport of Saccharide Rim-Appended Pillar[5]arene Artificial Water Channels. J Am Chem Soc 2023; 145:21904-21914. [PMID: 37771004 DOI: 10.1021/jacs.3c06335] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/30/2023]
Abstract
Transport of water across cell membranes is a fundamental process for important biological functions. Herein, we focused our research on a new type of symmetrical saccharide rim-functionalized pillar[5]arene (PA-S) artificial water channels with variable pore structures. To point out the versatility of PA-S channels, we systematically varied the nature of anchoring/gate keepers d-mannoside, d-mannuronic acid, or sialic acid H-bonding groups on lateral pillar[5]arene (PA) arms, known as good membrane adhesives, to best describe the influence of the chemical structure on their transport activity. The control of hydrophobic membrane binding-hydrophilic water binding balance is an important feature influencing the channels' structuration and efficiency for a proper insertion into bilayer membranes. The glycosylated PA channels' transport performances were assessed in lipid bilayer membranes, and the channels were able to transport water at high rates (∼106-107 waters/s/channel within 1 order of magnitude as for aquaporins), serving as selective proton railways with total Na+ and K+ rejection. Molecular simulation substantiates the idea that the PAs can generate supramolecular pores, featuring hydrophilic carbohydrate gate-keepers that serve as water-sponge relays at the channel entrance, effectively absorbing and redirecting water within the channel. The present channels may be regarded as a rare biomimetic example of artificial channels presenting proton vs cation transport selectivity performances.
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Affiliation(s)
- Iuliana M Andrei
- Institut Europeen des Membranes (IEM), Adaptive Supramolecular Nanosystems Group (NSA), University of Montpellier, ENSCM-CNRS, UMR 5635, 34095 Montpellier, France
| | - Wenzhang Chen
- Department of Chemistry, Bio-Organic Chemistry Laboratory, University of Namur, Rue de Bruxelles 61, 5000 Namur, Belgium
| | - Marc Baaden
- Université Paris Cité, CNRS, Laboratoire de Biochimie Théorique, 13 rue Pierre et Marie Curie, 75005 Paris, France
| | - Stéphane P Vincent
- Department of Chemistry, Bio-Organic Chemistry Laboratory, University of Namur, Rue de Bruxelles 61, 5000 Namur, Belgium
| | - Mihail Barboiu
- Institut Europeen des Membranes (IEM), Adaptive Supramolecular Nanosystems Group (NSA), University of Montpellier, ENSCM-CNRS, UMR 5635, 34095 Montpellier, France
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3
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Li Y, Fu Y, Hou J. Investigating ion transport through artificial transmembrane channels containing introverted groups. CHINESE J CHEM 2022. [DOI: 10.1002/cjoc.202100836] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Ya‐Wei Li
- Department of Chemistry Fudan University, 220 Handan Road Shanghai 200433 China
| | - Yong‐Hong Fu
- Department of Chemistry Fudan University, 220 Handan Road Shanghai 200433 China
| | - Jun‐Li Hou
- Department of Chemistry Fudan University, 220 Handan Road Shanghai 200433 China
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4
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Zhang C, Tian J, Qi S, Yang B, Dong Z. Highly Efficient Exclusion of Alkali Metal Ions via Electrostatic Repulsion Inside Positively Charged Channels. NANO LETTERS 2020; 20:3627-3632. [PMID: 32323993 DOI: 10.1021/acs.nanolett.0c00567] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Understanding of the structure-function relationships of natural protein channels remains a challenging task because of their unattainable physiological functions in terms of selectivity. To achieve this, a synthetic system of chemically modified channels has been constructed based on helical polymer scaffolds. Here, we report a type of positively charged channels in which multiple quaternary ammonium groups are covalently modified on the lumen surface of helical polymer while the helical conformation is intact. Compared to unmodified channels, the existence of multiple charged groups in the cavity not only makes the lumen size narrower but also essentially changes the channel properties without obstructing channel structure. Our study indicates that positively charged channels preferentially transport anions with size-dependent selectivity, whereas alkali metal ions are almost completely suppressed by electrostatic repulsion. As a consequence, a specific artificial channel with high Cl-/Na+ selectivity ratio of 41:1 is obtained.
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Affiliation(s)
- Chenyang Zhang
- State Key Laboratory of Supramolecular Structure and Materials, College of Chemistry, Jilin University, Qianjin Street 2699, Changchun 130012, China
| | - Jun Tian
- State Key Laboratory of Supramolecular Structure and Materials, College of Chemistry, Jilin University, Qianjin Street 2699, Changchun 130012, China
| | - Shuaiwei Qi
- State Key Laboratory of Supramolecular Structure and Materials, College of Chemistry, Jilin University, Qianjin Street 2699, Changchun 130012, China
| | - Bing Yang
- State Key Laboratory of Supramolecular Structure and Materials, College of Chemistry, Jilin University, Qianjin Street 2699, Changchun 130012, China
| | - Zeyuan Dong
- State Key Laboratory of Supramolecular Structure and Materials, College of Chemistry, Jilin University, Qianjin Street 2699, Changchun 130012, China
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5
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Affiliation(s)
| | - Philip A. Gale
- School of Chemistry, The University of Sydney, Australia
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Li Y, Zheng S, Legrand Y, Gilles A, Van der Lee A, Barboiu M. Structure‐Driven Selection of Adaptive Transmembrane Na
+
Carriers or K
+
Channels. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201802570] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Affiliation(s)
- Yu‐Hao Li
- Lehn Institute of Functional MaterialsSchool of ChemistrySun Yat-sen University Guangzhou 510275 China
| | - Shaoping Zheng
- Lehn Institute of Functional MaterialsSchool of ChemistrySun Yat-sen University Guangzhou 510275 China
| | - Yves‐Marie Legrand
- Institut Europeen des MembranesAdaptive Supramolecular Nanosystems GroupUniversity of Montpellier, ENSCM-CNRS Place E. Bataillon CC047 34095 Montpellier France
| | - Arnaud Gilles
- Institut Europeen des MembranesAdaptive Supramolecular Nanosystems GroupUniversity of Montpellier, ENSCM-CNRS Place E. Bataillon CC047 34095 Montpellier France
| | - Arie Van der Lee
- Institut Europeen des MembranesAdaptive Supramolecular Nanosystems GroupUniversity of Montpellier, ENSCM-CNRS Place E. Bataillon CC047 34095 Montpellier France
| | - Mihail Barboiu
- Lehn Institute of Functional MaterialsSchool of ChemistrySun Yat-sen University Guangzhou 510275 China
- Institut Europeen des MembranesAdaptive Supramolecular Nanosystems GroupUniversity of Montpellier, ENSCM-CNRS Place E. Bataillon CC047 34095 Montpellier France
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7
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Li YH, Zheng S, Legrand YM, Gilles A, Van der Lee A, Barboiu M. Structure-Driven Selection of Adaptive Transmembrane Na + Carriers or K + Channels. Angew Chem Int Ed Engl 2018; 57:10520-10524. [PMID: 29900647 DOI: 10.1002/anie.201802570] [Citation(s) in RCA: 27] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2018] [Revised: 05/07/2018] [Indexed: 01/06/2023]
Abstract
Self-assembled alkyl-ureido-benzo-15-crown-5-ethers are selective ionophores for K+ cations, which are preferred to Na+ cations. The transport mechanism is determined by the optimal coordination rather than classical dimensional compatibility between the crown ether hole and the cation diameter. Herein, we demonstrate that systematic changes of the structure lead to unexpected modifications in the cation-transport activity and suffice to produce adaptive selection. We show that the main contribution to performance arises from optimal constraints on the conformational freedom, which are determined by the binding macrocycles, the nature of the hydrogen-bonding groups, and the hydrophobic tails. Simple changes to the flexible 15-crown-5-ether lead to selective carriers for Na+ . Hydrophobic stabilization of the channels through mutual interactions between lipids and variable hydrophobic tails appears to be an important cause of increased activity. Oppositely, restricted translocation is achieved when constrained hydrogen-bonded macrocyclic relays are less dynamic in a pore superstructure.
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Affiliation(s)
- Yu-Hao Li
- Lehn Institute of Functional Materials, School of Chemistry, Sun Yat-sen University, Guangzhou, 510275, China
| | - Shaoping Zheng
- Lehn Institute of Functional Materials, School of Chemistry, Sun Yat-sen University, Guangzhou, 510275, China
| | - Yves-Marie Legrand
- Institut Europeen des Membranes, Adaptive Supramolecular Nanosystems Group, University of Montpellier, ENSCM-CNRS, Place E. Bataillon CC047, 34095, Montpellier, France
| | - Arnaud Gilles
- Institut Europeen des Membranes, Adaptive Supramolecular Nanosystems Group, University of Montpellier, ENSCM-CNRS, Place E. Bataillon CC047, 34095, Montpellier, France
| | - Arie Van der Lee
- Institut Europeen des Membranes, Adaptive Supramolecular Nanosystems Group, University of Montpellier, ENSCM-CNRS, Place E. Bataillon CC047, 34095, Montpellier, France
| | - Mihail Barboiu
- Lehn Institute of Functional Materials, School of Chemistry, Sun Yat-sen University, Guangzhou, 510275, China.,Institut Europeen des Membranes, Adaptive Supramolecular Nanosystems Group, University of Montpellier, ENSCM-CNRS, Place E. Bataillon CC047, 34095, Montpellier, France
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8
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Shang J, Si W, Zhao W, Che Y, Hou JL, Jiang H. Preorganized Aryltriazole Foldamers as Effective Transmembrane Transporters for Chloride Anion. Org Lett 2014; 16:4008-11. [DOI: 10.1021/ol501772v] [Citation(s) in RCA: 44] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Affiliation(s)
- Jie Shang
- College
of Chemistry, Beijing Normal University, Beijing 100875, China
- CAS
Key Laboratory of Photochemistry, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
| | - Wen Si
- Department
of Chemistry, Fudan University, 220 Handan Road, Shanghai 200433, China
| | - Wei Zhao
- College
of Chemistry, Beijing Normal University, Beijing 100875, China
- CAS
Key Laboratory of Photochemistry, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
| | - Yanke Che
- CAS
Key Laboratory of Photochemistry, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
| | - Jun-Li Hou
- Department
of Chemistry, Fudan University, 220 Handan Road, Shanghai 200433, China
| | - Hua Jiang
- College
of Chemistry, Beijing Normal University, Beijing 100875, China
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