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Achievements and Expectations in the Field of Computational Heterogeneous Catalysis in an Innovation Context. Top Catal 2021. [DOI: 10.1007/s11244-021-01489-y] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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Pablo‐García S, García‐Muelas R, Sabadell‐Rendón A, López N. Dimensionality reduction of complex reaction networks in heterogeneous catalysis: From l
inear‐scaling
relationships to statistical learning techniques. WIRES COMPUTATIONAL MOLECULAR SCIENCE 2021. [DOI: 10.1002/wcms.1540] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Affiliation(s)
- Sergio Pablo‐García
- Institute of Chemical Research of Catalonia The Barcelona Institute of Science and Technology Tarragona Spain
| | - Rodrigo García‐Muelas
- Institute of Chemical Research of Catalonia The Barcelona Institute of Science and Technology Tarragona Spain
| | - Albert Sabadell‐Rendón
- Institute of Chemical Research of Catalonia The Barcelona Institute of Science and Technology Tarragona Spain
| | - Núria López
- Institute of Chemical Research of Catalonia The Barcelona Institute of Science and Technology Tarragona Spain
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3
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Son SH, Choi HK, Kwon JSI. Multiscale modeling and control of pulp digester under fiber-to-fiber heterogeneity. Comput Chem Eng 2020. [DOI: 10.1016/j.compchemeng.2020.107117] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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4
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5
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Abstract
This review covers the scope of multiscale computational fluid dynamics (CFD), laying the framework for studying hydrodynamics with and without chemical reactions in single and multiple phases regarded as continuum fluids. The molecular, coarse-grained particle, and meso-scale dynamics at the individual scale are excluded in this review. Scoping single-scale Eulerian CFD approaches, the necessity of multiscale CFD is highlighted. First, the Eulerian CFD theory, including the governing and turbulence equations, is described for single and multiple phases. The Reynolds-averaged Navier–Stokes (RANS)-based turbulence model such as the standard k-ε equation is briefly presented, which is commonly used for industrial flow conditions. Following the general CFD theories based on the first-principle laws, a multiscale CFD strategy interacting between micro- and macroscale domains is introduced. Next, the applications of single-scale CFD are presented for chemical and biological processes such as gas distributors, combustors, gas storage tanks, bioreactors, fuel cells, random- and structured-packing columns, gas-liquid bubble columns, and gas-solid and gas-liquid-solid fluidized beds. Several multiscale simulations coupled with Eulerian CFD are reported, focusing on the coupling strategy between two scales. Finally, challenges to multiscale CFD simulations are discussed. The need for experimental validation of CFD results is also presented to lay the groundwork for digital twins supported by CFD. This review culminates in conclusions and perspectives of multiscale CFD.
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Belviso F, Claerbout VEP, Comas-Vives A, Dalal NS, Fan FR, Filippetti A, Fiorentini V, Foppa L, Franchini C, Geisler B, Ghiringhelli LM, Groß A, Hu S, Íñiguez J, Kauwe SK, Musfeldt JL, Nicolini P, Pentcheva R, Polcar T, Ren W, Ricci F, Ricci F, Sen HS, Skelton JM, Sparks TD, Stroppa A, Urru A, Vandichel M, Vavassori P, Wu H, Yang K, Zhao HJ, Puggioni D, Cortese R, Cammarata A. Viewpoint: Atomic-Scale Design Protocols toward Energy, Electronic, Catalysis, and Sensing Applications. Inorg Chem 2019; 58:14939-14980. [DOI: 10.1021/acs.inorgchem.9b01785] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Affiliation(s)
- Florian Belviso
- Department of Control Engineering, Czech Technical University in Prague, Technicka 2, 16627 Prague 6, Czech Republic
| | - Victor E. P. Claerbout
- Department of Control Engineering, Czech Technical University in Prague, Technicka 2, 16627 Prague 6, Czech Republic
| | - Aleix Comas-Vives
- Department of Chemistry, Universitat Autònoma de Barcelona, 08193 Cerdanyola del Vallès, Catalonia, Spain
| | - Naresh S. Dalal
- National High Magnet Field Lab, Tallahassee, Florida 32310, United States
- Department of Chemistry & Biochemistry, Florida State University, Tallahassee, Florida 32306, United States
| | - Feng-Ren Fan
- Laboratory for Computational Physical Sciences (MOE), State Key Laboratory of Surface Physics, and Department of Physics, Fudan University, Shanghai 200433, China
| | - Alessio Filippetti
- Department of Physics at University of Cagliari, and CNR-IOM, UOS Cagliari, Cittadella Universitaria, I-09042 Monserrato (CA), Italy
| | - Vincenzo Fiorentini
- Department of Physics at University of Cagliari, and CNR-IOM, UOS Cagliari, Cittadella Universitaria, I-09042 Monserrato (CA), Italy
| | - Lucas Foppa
- Department of Chemistry and Applied Biosciences, ETH Zürich, Vladimir-Prelog-Weg 1-5, CH-8093 Zürich, Switzerland
| | - Cesare Franchini
- Faculty of Physics and Center for Computational Materials Science, University of Vienna, Sensengasse 8, A-1090 Vienna, Austria
- Dipartimento di Fisica e Astronomia, Università di Bologna, Bologna 40127, Italy
| | - Benjamin Geisler
- Department of Physics and Center for Nanointegration (CENIDE), Universität Duisburg-Essen, Lotharstr. 1, Duisburg 47057, Germany
| | | | - Axel Groß
- Electrochemical Energy Storage, Helmholtz Institut Ulm, Ulm 89069, Germany
- Institute of Theoretical Chemistry, Ulm University, Ulm 89069, Germany
| | - Shunbo Hu
- Department of Physics, Materials Genome Institute, and International Center of Quantum and Molecular Structures, Shanghai University, 99 Shangda Road, Shanghai 200444, China
| | - Jorge Íñiguez
- Materials Research and Technology Department, Luxembourg Institute of Science and Technology, Avenue des Hauts-Fourneaux 5, L-4362 Esch/Alzette, Luxembourg
- Physics and Materials Research Unit, University of Luxembourg, Rue du Brill 41, Belvaux L-4422, Luxembourg
| | - Steven Kaai Kauwe
- Materials Science & Engineering Department, University of Utah, 122 Central Campus Drive, Salt Lake City, Utah 84112, United States
| | - Janice L. Musfeldt
- Department of Chemistry, University of Tennessee, Knoxville, Tennessee 37996, United States
| | - Paolo Nicolini
- Department of Control Engineering, Czech Technical University in Prague, Technicka 2, 16627 Prague 6, Czech Republic
| | - Rossitza Pentcheva
- Department of Physics and Center for Nanointegration (CENIDE), Universität Duisburg-Essen, Lotharstr. 1, Duisburg 47057, Germany
| | - Tomas Polcar
- Department of Control Engineering, Czech Technical University in Prague, Technicka 2, 16627 Prague 6, Czech Republic
| | - Wei Ren
- Department of Physics, Materials Genome Institute, and International Center of Quantum and Molecular Structures, Shanghai University, 99 Shangda Road, Shanghai 200444, China
| | - Fabio Ricci
- Physique Theorique des Materiaux, Universite de Liege, Sart-Tilman B-4000, Belgium
| | - Francesco Ricci
- Institute of Condensed Matter and Nanosciences, Universite Catholique de Louvain, Chemin des Etoiles 8, Louvain-la-Neuve B-1348, Belgium
| | - Huseyin Sener Sen
- Department of Control Engineering, Czech Technical University in Prague, Technicka 2, 16627 Prague 6, Czech Republic
| | - Jonathan Michael Skelton
- Department of Chemistry, University of Manchester, Oxford Road, Manchester M13 9PL, United Kingdom
| | - Taylor D. Sparks
- Materials Science & Engineering Department, University of Utah, 122 Central Campus Drive, Salt Lake City, Utah 84112, United States
| | - Alessandro Stroppa
- CNR-SPIN, Department of Physical Sciences and Chemistry, Universita degli Studi dell’Aquila, Via Vetoio, Coppito (AQ) 67010, Italy
| | - Andrea Urru
- Department of Physics at University of Cagliari, and CNR-IOM, UOS Cagliari, Cittadella Universitaria, I-09042 Monserrato (CA), Italy
| | - Matthias Vandichel
- Department of Chemical Sciences and Bernal Institute, Limerick University, Limerick, Ireland
- Department of Chemistry and Material Science and Department of Applied Physics, Aalto University, Espoo 02150, Finland
| | - Paolo Vavassori
- CIC nanoGUNE, San Sebastian E-20018, Spain
- IKERBASQUE, Basque Foundation for Science, Bilbao 48013, Spain
| | - Hua Wu
- Laboratory for Computational Physical Sciences (MOE), State Key Laboratory of Surface Physics, and Department of Physics, Fudan University, Shanghai 200433, China
- Collaborative Innovation Center of Advanced Microstructures, Nanjing 210093, China
| | - Ke Yang
- Laboratory for Computational Physical Sciences (MOE), State Key Laboratory of Surface Physics, and Department of Physics, Fudan University, Shanghai 200433, China
| | - Hong Jian Zhao
- Materials Research and Technology Department, Luxembourg Institute of Science and Technology, Avenue des Hauts-Fourneaux 5, L-4362 Esch/Alzette, Luxembourg
- Physics Department and Institute for Engineering, University of Arkansas, Fayetteville, Arkansas 72701,United States
| | - Danilo Puggioni
- Department of Materials Science and Engineering, Northwestern University, 2220 Campus Drive, Evanston, Illinois 60208, United States
| | - Remedios Cortese
- Department of Physics and Chemistry, Università degli Studi di Palermo, Viale delle Scienze ed. 17, Palermo 90128, Italy
| | - Antonio Cammarata
- Department of Control Engineering, Czech Technical University in Prague, Technicka 2, 16627 Prague 6, Czech Republic
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8
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Marolf DM, Jones MR. Measurement Challenges in Dynamic and Nonequilibrium Nanoscale Systems. Anal Chem 2019; 91:13324-13336. [DOI: 10.1021/acs.analchem.9b02702] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
Affiliation(s)
- David M. Marolf
- Department of Chemistry, Rice University, Houston, Texas 77005, United States
| | - Matthew R. Jones
- Department of Chemistry, Rice University, Houston, Texas 77005, United States
- Department of Materials Science and Nanoengineering, Rice University, Houston, Texas 77005, United States
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9
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10
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Urrea-Quintero JH, Ochoa S, Hernández H. A reduced-order multiscale model of a free-radical semibatch emulsion polymerization process. Comput Chem Eng 2019. [DOI: 10.1016/j.compchemeng.2019.04.029] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
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11
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Matera S, Schneider WF, Heyden A, Savara A. Progress in Accurate Chemical Kinetic Modeling, Simulations, and Parameter Estimation for Heterogeneous Catalysis. ACS Catal 2019. [DOI: 10.1021/acscatal.9b01234] [Citation(s) in RCA: 94] [Impact Index Per Article: 15.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Sebastian Matera
- Fachbereich Mathematik and Informatik, Freie Universität, 14195 Berlin, Germany
| | - William F. Schneider
- Department of Chemical and Biomolecular Engineering, University of Notre Dame, Notre Dame, Indiana 46556, United States
| | - Andreas Heyden
- Department of Chemical Engineering, University of South Carolina, Columbia, South Carolina 29208, United States
| | - Aditya Savara
- Chemical Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37830, United States
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12
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Iyer SS, Hasan MMF. Mapping the Material-Property Space for Feasible Process Operation: Application to Combined Natural-Gas Separation and Storage. Ind Eng Chem Res 2019. [DOI: 10.1021/acs.iecr.9b01469] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Shachit S. Iyer
- Artie McFerrin Department of Chemical Engineering, Texas A&M University, College Station, Texas 77843-3122, United States
| | - M. M. Faruque Hasan
- Artie McFerrin Department of Chemical Engineering, Texas A&M University, College Station, Texas 77843-3122, United States
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13
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Andersen M, Panosetti C, Reuter K. A Practical Guide to Surface Kinetic Monte Carlo Simulations. Front Chem 2019; 7:202. [PMID: 31024891 PMCID: PMC6465329 DOI: 10.3389/fchem.2019.00202] [Citation(s) in RCA: 93] [Impact Index Per Article: 15.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2018] [Accepted: 03/15/2019] [Indexed: 11/26/2022] Open
Abstract
This review article is intended as a practical guide for newcomers to the field of kinetic Monte Carlo (KMC) simulations, and specifically to lattice KMC simulations as prevalently used for surface and interface applications. We will provide worked out examples using the kmos code, where we highlight the central approximations made in implementing a KMC model as well as possible pitfalls. This includes the mapping of the problem onto a lattice and the derivation of rate constant expressions for various elementary processes. Example KMC models will be presented within the application areas surface diffusion, crystal growth and heterogeneous catalysis, covering both transient and steady-state kinetics as well as the preparation of various initial states of the system. We highlight the sensitivity of KMC models to the elementary processes included, as well as to possible errors in the rate constants. For catalysis models in particular, a recurrent challenge is the occurrence of processes at very different timescales, e.g., fast diffusion processes and slow chemical reactions. We demonstrate how to overcome this timescale disparity problem using recently developed acceleration algorithms. Finally, we will discuss how to account for lateral interactions between the species adsorbed to the lattice, which can play an important role in all application areas covered here.
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Affiliation(s)
- Mie Andersen
- Chair for Theoretical Chemistry and Catalysis Research Center, Technische Universität München, Garching, Germany
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Sivaramakrishnan K, Puliyanda A, Tefera DT, Ganesh A, Thirumalaivasan S, Prasad V. A Perspective on the Impact of Process Systems Engineering on Reaction Engineering. Ind Eng Chem Res 2019. [DOI: 10.1021/acs.iecr.9b00280] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
Affiliation(s)
- Kaushik Sivaramakrishnan
- Department of Chemical and Materials Engineering, University of Alberta, Edmonton, AB T6G 2R3, Canada
| | - Anjana Puliyanda
- Department of Chemical and Materials Engineering, University of Alberta, Edmonton, AB T6G 2R3, Canada
| | - Dereje Tamiru Tefera
- Department of Chemical and Materials Engineering, University of Alberta, Edmonton, AB T6G 2R3, Canada
| | - Ajay Ganesh
- Department of Chemical and Materials Engineering, University of Alberta, Edmonton, AB T6G 2R3, Canada
| | - Sushmitha Thirumalaivasan
- Department of Chemical and Materials Engineering, University of Alberta, Edmonton, AB T6G 2R3, Canada
| | - Vinay Prasad
- Department of Chemical and Materials Engineering, University of Alberta, Edmonton, AB T6G 2R3, Canada
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Abstract
Chemical reactor modelling based on insights and data on a molecular level has become reality over the last few years. Multiscale models describing elementary reaction steps and full microkinetic schemes, pore structures, multicomponent adsorption and diffusion inside pores, and entire reactors have been presented. Quantum mechanical (QM) approaches, molecular simulations (Monte Carlo and molecular dynamics), and continuum equations have been employed for this purpose. Some recent developments in these approaches are presented, in particular time-dependent QM methods, calculation of van der Waals forces, new approaches for force field generation, automatic setup of reaction schemes, and pore modelling. Multiscale simulations are discussed. Applications of these approaches to heterogeneous catalysis are demonstrated for examples that have found growing interest over the last few years, such as metal-support interactions, influence of pore geometry on reactions, noncovalent bonding, reaction dynamics, dynamic changes in catalyst nanoparticle structure, electrocatalysis, solvent effects in catalysis, and multiscale modelling.
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Affiliation(s)
- Frerich J. Keil
- Department of Chemical Engineering, Hamburg University of Technology, D-21073 Hamburg, Germany
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16
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Sutton JE, Lorenzi JM, Krogel JT, Xiong Q, Pannala S, Matera S, Savara A. Electrons to Reactors Multiscale Modeling: Catalytic CO Oxidation over RuO2. ACS Catal 2018. [DOI: 10.1021/acscatal.8b00713] [Citation(s) in RCA: 31] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Jonathan E. Sutton
- Chemical Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States
| | - Juan M. Lorenzi
- Theoretical Chemistry and Catalysis Research Center, Technische Universität München, 85748 Garching, Germany
| | - Jaron T. Krogel
- Materials Science and Technology Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States
| | - Qingang Xiong
- Computer Science and Mathematics Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States
| | - Sreekanth Pannala
- Computer Science and Mathematics Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States
| | - Sebastian Matera
- Fachbereich Mathematik & Informatik, Free University, 14195 Berlin, Germany
| | - Aditya Savara
- Chemical Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States
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17
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Foppa L, Margossian T, Kim SM, Müller C, Copéret C, Larmier K, Comas-Vives A. Contrasting the Role of Ni/Al 2O 3 Interfaces in Water-Gas Shift and Dry Reforming of Methane. J Am Chem Soc 2017; 139:17128-17139. [PMID: 29077396 DOI: 10.1021/jacs.7b08984] [Citation(s) in RCA: 134] [Impact Index Per Article: 16.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
Transition metal nanoparticles (NPs) are typically supported on oxides to ensure their stability, which may result in modification of the original NP catalyst reactivity. In a number of cases, this is related to the formation of NP/support interface sites that play a role in catalysis. The metal/support interface effect verified experimentally is commonly ascribed to stronger reactants adsorption or their facile activation on such sites compared to bare NPs, as indicated by DFT-derived potential energy surfaces (PESs). However, the relevance of specific reaction elementary steps to the overall reaction rate depends on the preferred reaction pathways at reaction conditions, which usually cannot be inferred based solely on PES. Hereby, we use a multiscale (DFT/microkinetic) modeling approach and experiments to investigate the reactivity of the Ni/Al2O3 interface toward water-gas shift (WGS) and dry reforming of methane (DRM), two key industrial reactions with common elementary steps and intermediates, but held at significantly different temperatures: 300 vs 650 °C, respectively. Our model shows that despite the more energetically favorable reaction pathways provided by the Ni/Al2O3 interface, such sites may or may not impact the overall reaction rate depending on reaction conditions: the metal/support interface provides the active site for WGS reaction, acting as a reservoir for oxygenated species, while all Ni surface atoms are active for DRM. This is in contrast to what PESs alone indicate. The different active site requirement for WGS and DRM is confirmed by the experimental evaluation of the activity of a series of Al2O3-supported Ni NP catalysts with different NP sizes (2-16 nm) toward both reactions.
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Affiliation(s)
- Lucas Foppa
- Department of Chemistry and Applied Biosciences, ETH Zurich , Vladimir Prelog Weg 1-5, CH-8093 Zurich, Switzerland
| | - Tigran Margossian
- Department of Chemistry and Applied Biosciences, ETH Zurich , Vladimir Prelog Weg 1-5, CH-8093 Zurich, Switzerland
| | - Sung Min Kim
- Laboratory of Energy Science and Engineering, Department of Mechanical and Process Engineering, ETH Zurich , Leonhardstrasse 21, CH-8092 Zurich, Switzerland
| | - Christoph Müller
- Laboratory of Energy Science and Engineering, Department of Mechanical and Process Engineering, ETH Zurich , Leonhardstrasse 21, CH-8092 Zurich, Switzerland
| | - Christophe Copéret
- Department of Chemistry and Applied Biosciences, ETH Zurich , Vladimir Prelog Weg 1-5, CH-8093 Zurich, Switzerland
| | - Kim Larmier
- Department of Chemistry and Applied Biosciences, ETH Zurich , Vladimir Prelog Weg 1-5, CH-8093 Zurich, Switzerland
| | - Aleix Comas-Vives
- Department of Chemistry and Applied Biosciences, ETH Zurich , Vladimir Prelog Weg 1-5, CH-8093 Zurich, Switzerland
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Chaffart D, Ricardez-Sandoval LA. Robust optimization of a multiscale heterogeneous catalytic reactor system with spatially-varying uncertainty descriptions using polynomial chaos expansions. CAN J CHEM ENG 2017. [DOI: 10.1002/cjce.22912] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
Affiliation(s)
- Donovan Chaffart
- Department of Chemical Engineering; University of Waterloo; Waterloo ON N2L 3G1 Canada
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20
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Mironenko AV, Vlachos DG. Conjugation-Driven "Reverse Mars-van Krevelen"-Type Radical Mechanism for Low-Temperature C-O Bond Activation. J Am Chem Soc 2016; 138:8104-13. [PMID: 27281043 DOI: 10.1021/jacs.6b02871] [Citation(s) in RCA: 69] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
C-O bond activation on monofunctional catalysts (metals, carbides, and oxides) is challenging due to activity constraints imposed by energy scaling relationships. Yet, contrary to predictions, recently discovered multifunctional metal/metal oxide catalysts (e.g., Rh/ReOx, Rh/MoOx, Ir/VOx) demonstrate unusually high C-O scission activity at moderate temperatures. Herein, we use extensive density functional theory calculations, first-principles microkinetic modeling, and electronic structure analysis to elucidate the metal/metal oxide synergy in the Ru/RuO2 catalyst, which enables up to 76% yield of the C-O scission product (2-methyl furan) in catalytic transfer hydrogenolysis of furfural at low temperatures. Our key mechanistic finding is a facile radical-mediated C-O bond activation on RuO2 oxygen vacancies, which directly leads to a weakly bound final product. This is the first time the radical reduction mechanism is reported in heterogeneous catalysis at temperatures <200 °C. We attribute the unique catalytic properties to the formation of a conjugation-stabilized furfuryl radical upon C-O bond scission, the strong hydroxyl affinity of oxygen vacancies due to the metallic character of RuO2, and the acid-base heterogeneity of the oxide surface. The conjugation-driven radical-assisted C-O bond scission applies to any catalytic surface that preserves the π-electron system of the reactant and leads to C-O selectivity enhancement, with notable examples including Cu, H-covered Pd, self-assembled monolayers on Pd, and oxygen-covered Mo2C. Furthermore, we reveal the cooperativity of active sites in multifunctional catalysts. The mechanism is fully consistent with kinetic studies and isotopic labeling experiments, and the insights gained might prove useful more broadly in overcoming activity constraints induced by energy scaling relationships.
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Affiliation(s)
- Alexander V Mironenko
- Department of Chemical and Biomolecular Engineering, Catalysis Center for Energy Innovation, University of Delaware , Newark, Delaware 19716, United States
| | - Dionisios G Vlachos
- Department of Chemical and Biomolecular Engineering, Catalysis Center for Energy Innovation, University of Delaware , Newark, Delaware 19716, United States
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Srinivasan S, Cluett WR, Mahadevan R. Constructing kinetic models of metabolism at genome-scales: A review. Biotechnol J 2016; 10:1345-59. [PMID: 26332243 DOI: 10.1002/biot.201400522] [Citation(s) in RCA: 64] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2014] [Revised: 04/01/2015] [Accepted: 07/08/2015] [Indexed: 11/08/2022]
Abstract
Constraint-based modeling of biological networks (metabolism, transcription and signal transduction), although used successfully in many applications, suffer from specific limitations such as the lack of representation of metabolite concentrations and enzymatic regulation, which are necessary for a complete physiologically relevant model. Kinetic models conversely overcome these shortcomings and enable dynamic analysis of biological systems for enhanced in silico hypothesis generation. Nonetheless, kinetic models also have limitations for modeling at genome-scales chiefly due to: (i) model non-linearity; (ii) computational tractability; (iii) parameter identifiability; (iv) estimability; and (v) uncertainty. In order to support further development of kinetic models as viable alternatives to constraint-based models, this review presents a brief description of the existing obstacles towards building genome-scale kinetic models. Specific kinetic modeling frameworks capable of overcoming these obstacles are covered in this review. The tractability and physiological feasibility of these models are discussed with the objective of using available in vivo experimental observations to define the model parameter space. Among the different methods discussed, Monte Carlo kinetic models of metabolism stand out as potentially tractable methods to model genome scale networks while also addressing in vivo parameter uncertainty.
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Affiliation(s)
- Shyam Srinivasan
- Department of Chemical Engineering and Applied Chemistry, University of Toronto, Toronto, ON, Canada
| | - William R Cluett
- Department of Chemical Engineering and Applied Chemistry, University of Toronto, Toronto, ON, Canada
| | - Radhakrishnan Mahadevan
- Department of Chemical Engineering and Applied Chemistry, University of Toronto, Toronto, ON, Canada. .,Institute of Biomaterials and Biomedical Engineering, University of Toronto, Toronto, ON, Canada.
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Greeley J. Theoretical Heterogeneous Catalysis: Scaling Relationships and Computational Catalyst Design. Annu Rev Chem Biomol Eng 2016; 7:605-35. [PMID: 27088666 DOI: 10.1146/annurev-chembioeng-080615-034413] [Citation(s) in RCA: 204] [Impact Index Per Article: 22.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
Scaling relationships are theoretical constructs that relate the binding energies of a wide variety of catalytic intermediates across a range of catalyst surfaces. Such relationships are ultimately derived from bond order conservation principles that were first introduced several decades ago. Through the growing power of computational surface science and catalysis, these concepts and their applications have recently begun to have a major impact in studies of catalytic reactivity and heterogeneous catalyst design. In this review, the detailed theory behind scaling relationships is discussed, and the existence of these relationships for catalytic materials ranging from pure metal to oxide surfaces, for numerous classes of molecules, and for a variety of catalytic surface structures is described. The use of the relationships to understand and elucidate reactivity trends across wide classes of catalytic surfaces and, in some cases, to predict optimal catalysts for certain chemical reactions, is explored. Finally, the observation that, in spite of the tremendous power of scaling relationships, their very existence places limits on the maximum rates that may be obtained for the catalyst classes in question is discussed, and promising strategies are explored to overcome these limitations to usher in a new era of theory-driven catalyst design.
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Affiliation(s)
- Jeffrey Greeley
- School of Chemical Engineering, Purdue University, West Lafayette, Indiana 47907;
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23
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Larmier K, Nicolle A, Chizallet C, Cadran N, Maury S, Lamic-Humblot AF, Marceau E, Lauron-Pernot H. Influence of Coadsorbed Water and Alcohol Molecules on Isopropyl Alcohol Dehydration on γ-Alumina: Multiscale Modeling of Experimental Kinetic Profiles. ACS Catal 2016. [DOI: 10.1021/acscatal.6b00080] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Affiliation(s)
- Kim Larmier
- Sorbonne Universités, UPMC Univ Paris 06,
UMR 7197 CNRS, Laboratoire de Réactivité de Surface, F-75005 Paris, France
- CNRS, UMR 7197
CNRS, Laboratoire de Réactivité
de Surface, F-75005 Paris, France
- IFP Energies nouvelles, Catalysis and Separation
Division, Rond-Point de l’échangeur
de Solaize, BP3, 69360 Solaize, France
| | - André Nicolle
- IFP Energies nouvelles, Powertrain and Vehicle
Division, 1-4 avenue de
Bois-Préau, 92852 Rueil-Malmaison Cedex, France
| | - Céline Chizallet
- IFP Energies nouvelles, Catalysis and Separation
Division, Rond-Point de l’échangeur
de Solaize, BP3, 69360 Solaize, France
| | - Nicolas Cadran
- IFP Energies nouvelles, Catalysis and Separation
Division, Rond-Point de l’échangeur
de Solaize, BP3, 69360 Solaize, France
| | - Sylvie Maury
- IFP Energies nouvelles, Catalysis and Separation
Division, Rond-Point de l’échangeur
de Solaize, BP3, 69360 Solaize, France
| | - Anne-Félicie Lamic-Humblot
- Sorbonne Universités, UPMC Univ Paris 06,
UMR 7197 CNRS, Laboratoire de Réactivité de Surface, F-75005 Paris, France
- CNRS, UMR 7197
CNRS, Laboratoire de Réactivité
de Surface, F-75005 Paris, France
| | - Eric Marceau
- Sorbonne Universités, UPMC Univ Paris 06,
UMR 7197 CNRS, Laboratoire de Réactivité de Surface, F-75005 Paris, France
- CNRS, UMR 7197
CNRS, Laboratoire de Réactivité
de Surface, F-75005 Paris, France
| | - Hélène Lauron-Pernot
- Sorbonne Universités, UPMC Univ Paris 06,
UMR 7197 CNRS, Laboratoire de Réactivité de Surface, F-75005 Paris, France
- CNRS, UMR 7197
CNRS, Laboratoire de Réactivité
de Surface, F-75005 Paris, France
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Floudas CA, Niziolek AM, Onel O, Matthews LR. Multi‐scale systems engineering for energy and the environment: Challenges and opportunities. AIChE J 2016. [DOI: 10.1002/aic.15151] [Citation(s) in RCA: 64] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Affiliation(s)
- Christodoulos A. Floudas
- Artie McFerrin Dept. of Chemical EngineeringTexas A&M UniversityCollege Station TX77843 USA
- Texas A&M Energy Institute, 302D Williams Administration Building, 3372 Texas A&M UniversityCollege Station TX77843USA
| | - Alexander M. Niziolek
- Dept. of Chemical and Biological EngineeringPrinceton UniversityPrinceton NJ08544 USA
- Artie McFerrin Dept. of Chemical EngineeringTexas A&M UniversityCollege Station TX77843 USA
- Texas A&M Energy Institute, 302D Williams Administration Building, 3372 Texas A&M UniversityCollege Station TX77843USA
| | - Onur Onel
- Dept. of Chemical and Biological EngineeringPrinceton UniversityPrinceton NJ08544 USA
- Artie McFerrin Dept. of Chemical EngineeringTexas A&M UniversityCollege Station TX77843 USA
- Texas A&M Energy Institute, 302D Williams Administration Building, 3372 Texas A&M UniversityCollege Station TX77843USA
| | - Logan R. Matthews
- Dept. of Chemical and Biological EngineeringPrinceton UniversityPrinceton NJ08544 USA
- Artie McFerrin Dept. of Chemical EngineeringTexas A&M UniversityCollege Station TX77843 USA
- Texas A&M Energy Institute, 302D Williams Administration Building, 3372 Texas A&M UniversityCollege Station TX77843USA
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Rasoulian S, Ricardez-Sandoval LA. A robust nonlinear model predictive controller for a multiscale thin film deposition process. Chem Eng Sci 2015. [DOI: 10.1016/j.ces.2015.02.002] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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Gusmão GS, Christopher P. A general and robust approach for defining and solving microkinetic catalytic systems. AIChE J 2014. [DOI: 10.1002/aic.14627] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Affiliation(s)
- Gabriel S. Gusmão
- Dept. of Chemical and Environmental Engineering; University of California; Riverside, Riverside CA 92521
- School of Chemical Engineering (FEQ); University of Campinas; Campinas (UNICAMP); Campinas SP 13083-852 Brazil
- Renewable Technologies, Braskem S.A.; Campinas SP 13086-530 Brazil
| | - Phillip Christopher
- Dept. of Chemical and Environmental Engineering; University of California; Riverside, Riverside CA 92521
- Program in Materials Science & Engineering; University of California; Riverside, Riverside CA 92521
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28
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Rasoulian S, Ricardez-Sandoval LA. Uncertainty analysis and robust optimization of multiscale process systems with application to epitaxial thin film growth. Chem Eng Sci 2014. [DOI: 10.1016/j.ces.2014.05.027] [Citation(s) in RCA: 53] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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Chizallet C, Raybaud P. Density functional theory simulations of complex catalytic materials in reactive environments: beyond the ideal surface at low coverage. Catal Sci Technol 2014. [DOI: 10.1039/c3cy00965c] [Citation(s) in RCA: 48] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Advanced DFT models of complex catalysts, such as amorphous silica–alumina and supported subnanometric platinum particles, bridge the gap between the ideal surface model and the industrial catalyst.
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Affiliation(s)
- Céline Chizallet
- IFP Energies nouvelles
- Direction Catalyse et Séparation
- Rond-point de l'échangeur de Solaize
- , France
| | - Pascal Raybaud
- IFP Energies nouvelles
- Direction Catalyse et Séparation
- Rond-point de l'échangeur de Solaize
- , France
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Lim YI. State-of-arts in Multiscale Simulation for Process Development. KOREAN CHEMICAL ENGINEERING RESEARCH 2013. [DOI: 10.9713/kcer.2013.51.1.10] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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32
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Design of Ionic Liquids Using Property Clustering and Decomposition Techniques. ACTA ACUST UNITED AC 2013. [DOI: 10.1016/b978-0-444-63234-0.50160-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register]
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33
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López N, Almora-Barrios N, Carchini G, Błoński P, Bellarosa L, García-Muelas R, Novell-Leruth G, García-Mota M. State-of-the-art and challenges in theoretical simulations of heterogeneous catalysis at the microscopic level. Catal Sci Technol 2012. [DOI: 10.1039/c2cy20384g] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
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