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Wang W, Chen C, Vecchioni S, Zhang T, Wu C, Ohayon YP, Sha R, Seeman NC, Wei B. Reconfigurable Two‐Dimensional DNA Lattices: Static and Dynamic Angle Control. Angew Chem Int Ed Engl 2021. [DOI: 10.1002/ange.202112487] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Wen Wang
- School of Life Sciences Tsinghua University-Peking University Center for Life Sciences Center for Synthetic and Systems Biology Tsinghua University Beijing 100084 China
| | - Chunyu Chen
- School of Life Sciences Tsinghua University-Peking University Center for Life Sciences Center for Synthetic and Systems Biology Tsinghua University Beijing 100084 China
| | - Simon Vecchioni
- Department of Chemistry New York University New York New York 10003 USA
| | - Tianqing Zhang
- School of Life Sciences Tsinghua University-Peking University Center for Life Sciences Center for Synthetic and Systems Biology Tsinghua University Beijing 100084 China
| | - Chengxian Wu
- School of Life Sciences Tsinghua University-Peking University Center for Life Sciences Center for Synthetic and Systems Biology Tsinghua University Beijing 100084 China
| | - Yoel P. Ohayon
- Department of Chemistry New York University New York New York 10003 USA
| | - Ruojie Sha
- Department of Chemistry New York University New York New York 10003 USA
| | - Nadrian C. Seeman
- Department of Chemistry New York University New York New York 10003 USA
| | - Bryan Wei
- School of Life Sciences Tsinghua University-Peking University Center for Life Sciences Center for Synthetic and Systems Biology Tsinghua University Beijing 100084 China
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2
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Wang W, Chen C, Vecchioni S, Zhang T, Wu C, Ohayon YP, Sha R, Seeman NC, Wei B. Reconfigurable Two-Dimensional DNA Lattices: Static and Dynamic Angle Control. Angew Chem Int Ed Engl 2021; 60:25781-25786. [PMID: 34596325 DOI: 10.1002/anie.202112487] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2021] [Indexed: 11/11/2022]
Abstract
Branched DNA motifs serve as the basic construction elements for all synthetic DNA nanostructures. However, precise control of branching orientation remains a key challenge to further heighten the overall structural order. In this study, we use two strategies to control the branching orientation. The first one is based on immobile Holliday junctions which employ specific nucleotide sequences at the branch points which dictate their orientation. The second strategy is to use angle-enforcing struts to fix the branching orientation with flexible spacers at the branch points. We have also demonstrated that the branching orientation control can be achieved dynamically, either by canonical Watson-Crick base pairing or non-canonical nucleobase interactions (e.g., i-motif and G-quadruplex). With precise angle control and feedback from the chemical environment, these results will enable novel DNA nanomechanical sensing devices, and precisely-ordered three-dimensional architectures.
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Affiliation(s)
- Wen Wang
- School of Life Sciences, Tsinghua University-Peking University Center for Life Sciences, Center for Synthetic and Systems Biology, Tsinghua University, Beijing, 100084, China
| | - Chunyu Chen
- School of Life Sciences, Tsinghua University-Peking University Center for Life Sciences, Center for Synthetic and Systems Biology, Tsinghua University, Beijing, 100084, China
| | - Simon Vecchioni
- Department of Chemistry, New York University, New York, New York, 10003, USA
| | - Tianqing Zhang
- School of Life Sciences, Tsinghua University-Peking University Center for Life Sciences, Center for Synthetic and Systems Biology, Tsinghua University, Beijing, 100084, China
| | - Chengxian Wu
- School of Life Sciences, Tsinghua University-Peking University Center for Life Sciences, Center for Synthetic and Systems Biology, Tsinghua University, Beijing, 100084, China
| | - Yoel P Ohayon
- Department of Chemistry, New York University, New York, New York, 10003, USA
| | - Ruojie Sha
- Department of Chemistry, New York University, New York, New York, 10003, USA
| | - Nadrian C Seeman
- Department of Chemistry, New York University, New York, New York, 10003, USA
| | - Bryan Wei
- School of Life Sciences, Tsinghua University-Peking University Center for Life Sciences, Center for Synthetic and Systems Biology, Tsinghua University, Beijing, 100084, China
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3
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Carloni LE, Bezzu CG, Bonifazi D. Patterning Porous Networks through Self-Assembly of Programmed Biomacromolecules. Chemistry 2019; 25:16179-16200. [PMID: 31491049 DOI: 10.1002/chem.201902576] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2019] [Revised: 08/11/2019] [Indexed: 11/08/2022]
Abstract
Two-dimensional (2D) porous networks are of great interest for the fabrication of complex organized functional materials for potential applications in nanotechnologies and nanoelectronics. This review aims at providing an overview of bottom-up approaches towards the engineering of 2D porous networks by using biomacromolecules, with a particular focus on nucleic acids and proteins. The first part illustrates how the advancements in DNA nanotechnology allowed for the attainment of complex ordered porous two-dimensional DNA nanostructures, thanks to a biomimetic approach based on DNA molecules self-assembly through specific hydrogen-bond base pairing. The second part focuses the attention on how polypeptides and proteins structural properties could be used to engineer organized networks templating the formation of multifunctional materials. The structural organization of all examples is discussed as revealed by scanning probe microscopy or transmission electron microscopy imaging techniques.
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Affiliation(s)
- Laure-Elie Carloni
- Department of Chemistry and Namur Research College (NARC), University of Namur, Rue de Bruxelles 61, Namur, 5000, Belgium
| | - C Grazia Bezzu
- Cardiff University, School of Chemistry, Park Place, Main Building, CF10 3AT, Cardiff, Wales, UK
| | - Davide Bonifazi
- Cardiff University, School of Chemistry, Park Place, Main Building, CF10 3AT, Cardiff, Wales, UK
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4
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Huang K, Yang D, Tan Z, Chen S, Xiang Y, Mi Y, Mao C, Wei B. Self-Assembly of Wireframe DNA Nanostructures from Junction Motifs. Angew Chem Int Ed Engl 2019; 58:12123-12127. [PMID: 31190457 DOI: 10.1002/anie.201906408] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2019] [Indexed: 01/15/2023]
Abstract
Wireframe frameworks have been investigated for the construction of complex nanostructures from a scaffolded DNA origami approach; however, a similar framework is yet to be fully explored in a scaffold-free "LEGO" approach. Herein, we describe a general design scheme to construct wireframe DNA nanostructures entirely from short synthetic strands. A typical edge of the resulting structures in this study is composed of two parallel duplexes with crossovers on both ends, and three, four, or five edges radiate out from a certain vertex. By using such a self-assembly scheme, we produced planar lattices and polyhedral objects.
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Affiliation(s)
- Kai Huang
- School of Life Sciences, Tsinghua University-Peking University Center for Life Sciences, Center for Synthetic and Systems Biology, Tsinghua University, Beijing, 100084, China
| | - Donglei Yang
- School of Chemical Science and Engineering, Tongji University, Shanghai, 200092, China.,Institute of Molecular Medicine (IMM), Renji Hospital, Shanghai Jiao Tong University, School of Medicine, Shanghai, 200127, China
| | - Zhenyu Tan
- School of Life Sciences, Tsinghua University-Peking University Center for Life Sciences, Center for Synthetic and Systems Biology, Tsinghua University, Beijing, 100084, China.,Present address: Biophysics Program, University of Michigan, Ann Arbor, MI, 48109, USA
| | - Silian Chen
- Center for Infectious Disease Research, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, Beijing Advanced Innvation Center for Structural Biology, Department of Basic Medical Sciences, School of Medicine, Tsinghua University, Beijing, 100084, China.,School of Life Sciences, Peking University, Beijing, 100084, China
| | - Ye Xiang
- Center for Infectious Disease Research, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, Beijing Advanced Innvation Center for Structural Biology, Department of Basic Medical Sciences, School of Medicine, Tsinghua University, Beijing, 100084, China
| | - Yongli Mi
- School of Chemical Science and Engineering, Tongji University, Shanghai, 200092, China.,Department of Chemical and Biological Engineering, Hong Kong University of Science and Technology, Kowloon, Hong Kong SAR, China
| | - Chengde Mao
- Department of Chemistry, Purdue University, West Lafayette, IN, 47907, USA
| | - Bryan Wei
- School of Life Sciences, Tsinghua University-Peking University Center for Life Sciences, Center for Synthetic and Systems Biology, Tsinghua University, Beijing, 100084, China
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5
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Huang K, Yang D, Tan Z, Chen S, Xiang Y, Mi Y, Mao C, Wei B. Self‐Assembly of Wireframe DNA Nanostructures from Junction Motifs. Angew Chem Int Ed Engl 2019. [DOI: 10.1002/ange.201906408] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Kai Huang
- School of Life Sciences Tsinghua University-Peking University Center for Life Sciences, Center for Synthetic and Systems Biology Tsinghua University Beijing 100084 China
| | - Donglei Yang
- School of Chemical Science and Engineering Tongji University Shanghai 200092 China
- Institute of Molecular Medicine (IMM) Renji Hospital Shanghai Jiao Tong University School of Medicine Shanghai 200127 China
| | - Zhenyu Tan
- School of Life Sciences Tsinghua University-Peking University Center for Life Sciences, Center for Synthetic and Systems Biology Tsinghua University Beijing 100084 China
- Present address: Biophysics Program University of Michigan Ann Arbor MI 48109 USA
| | - Silian Chen
- Center for Infectious Disease Research Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases Beijing Advanced Innvation Center for Structural Biology Department of Basic Medical Sciences School of Medicine Tsinghua University Beijing 100084 China
- School of Life Sciences Peking University Beijing 100084 China
| | - Ye Xiang
- Center for Infectious Disease Research Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases Beijing Advanced Innvation Center for Structural Biology Department of Basic Medical Sciences School of Medicine Tsinghua University Beijing 100084 China
| | - Yongli Mi
- School of Chemical Science and Engineering Tongji University Shanghai 200092 China
- Department of Chemical and Biological Engineering Hong Kong University of Science and Technology Kowloon Hong Kong SAR China
| | - Chengde Mao
- Department of Chemistry Purdue University West Lafayette IN 47907 USA
| | - Bryan Wei
- School of Life Sciences Tsinghua University-Peking University Center for Life Sciences, Center for Synthetic and Systems Biology Tsinghua University Beijing 100084 China
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6
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Zhang F, Jiang S, Li W, Hunt A, Liu Y, Yan H. Self‐Assembly of Complex DNA Tessellations by Using Low‐Symmetry Multi‐arm DNA Tiles. Angew Chem Int Ed Engl 2016; 55:8860-3. [DOI: 10.1002/anie.201601944] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2016] [Revised: 04/28/2016] [Indexed: 01/25/2023]
Affiliation(s)
- Fei Zhang
- School of Molecular Sciences and The Biodesign Institute Arizona State University Tempe AZ 85287 USA
| | - Shuoxing Jiang
- School of Molecular Sciences and The Biodesign Institute Arizona State University Tempe AZ 85287 USA
| | - Wei Li
- School of Molecular Sciences and The Biodesign Institute Arizona State University Tempe AZ 85287 USA
| | - Ashley Hunt
- School of Molecular Sciences and The Biodesign Institute Arizona State University Tempe AZ 85287 USA
| | - Yan Liu
- School of Molecular Sciences and The Biodesign Institute Arizona State University Tempe AZ 85287 USA
| | - Hao Yan
- School of Molecular Sciences and The Biodesign Institute Arizona State University Tempe AZ 85287 USA
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7
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Zhang F, Jiang S, Li W, Hunt A, Liu Y, Yan H. Self‐Assembly of Complex DNA Tessellations by Using Low‐Symmetry Multi‐arm DNA Tiles. Angew Chem Int Ed Engl 2016. [DOI: 10.1002/ange.201601944] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Fei Zhang
- School of Molecular Sciences and The Biodesign Institute Arizona State University Tempe AZ 85287 USA
| | - Shuoxing Jiang
- School of Molecular Sciences and The Biodesign Institute Arizona State University Tempe AZ 85287 USA
| | - Wei Li
- School of Molecular Sciences and The Biodesign Institute Arizona State University Tempe AZ 85287 USA
| | - Ashley Hunt
- School of Molecular Sciences and The Biodesign Institute Arizona State University Tempe AZ 85287 USA
| | - Yan Liu
- School of Molecular Sciences and The Biodesign Institute Arizona State University Tempe AZ 85287 USA
| | - Hao Yan
- School of Molecular Sciences and The Biodesign Institute Arizona State University Tempe AZ 85287 USA
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8
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Tintoré M, Eritja R, Fábrega C. DNA Nanoarchitectures: Steps towards Biological Applications. Chembiochem 2014; 15:1374-90. [DOI: 10.1002/cbic.201402014] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2014] [Indexed: 12/26/2022]
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9
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Niemeyer CM. Semisynthetic DNA-protein conjugates for biosensing and nanofabrication. Angew Chem Int Ed Engl 2010; 49:1200-16. [PMID: 20091721 DOI: 10.1002/anie.200904930] [Citation(s) in RCA: 300] [Impact Index Per Article: 21.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Abstract
Conjugation with artificial nucleic acids allows proteins to be modified with a synthetically accessible, robust tag. This attachment is addressable in a highly specific manner by means of molecular recognition events, such as Watson-Crick hybridization. Such DNA-protein conjugates, with their combined properties, have a broad range of applications, such as in high-performance biomedical diagnostic assays, fundamental research on molecular recognition, and the synthesis of DNA nanostructures. This Review surveys current approaches to generate DNA-protein conjugates as well as recent advances in their applications. For example, DNA-protein conjugates have been assembled into model systems for the investigation of catalytic cascade reactions and light-harvesting devices. Such hybrid conjugates are also used for the biofunctionalization of planar surfaces for micro- and nanoarrays, and for decorating inorganic nanoparticles to enable applications in sensing, materials science, and catalysis.
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Affiliation(s)
- Christof M Niemeyer
- Technische Universität Dortmund, Fakultät Chemie, Biologisch-Chemische Mikrostrukturtechnik, Otto-Hahn Strasse 6, 44227 Dortmund, Germany.
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10
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Zhao Z, Yan H, Liu Y. A route to scale up DNA origami using DNA tiles as folding staples. Angew Chem Int Ed Engl 2010; 49:1414-7. [PMID: 20104562 DOI: 10.1002/anie.200906225] [Citation(s) in RCA: 99] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Zhao Zhao
- Department of Chemistry and Biochemistry & The Biodesign Institute, Arizona State University, Tempe, AZ 85287, USA
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11
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Boer D, Kerckhoffs J, Parajo Y, Pascu M, Usón I, Lincoln P, Hannon M, Coll M. Self-Assembly of Functionalizable Two-Component 3D DNA Arrays through the Induced Formation of DNA Three-Way-Junction Branch Points by Supramolecular Cylinders. Angew Chem Int Ed Engl 2010; 49:2336-9. [DOI: 10.1002/anie.200906742] [Citation(s) in RCA: 59] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
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12
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Boer D, Kerckhoffs J, Parajo Y, Pascu M, Usón I, Lincoln P, Hannon M, Coll M. Self-Assembly of Functionalizable Two-Component 3D DNA Arrays through the Induced Formation of DNA Three-Way-Junction Branch Points by Supramolecular Cylinders. Angew Chem Int Ed Engl 2010. [DOI: 10.1002/ange.200906742] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
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13
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Niemeyer C. Halbsynthetische DNA-Protein-Konjugate für Biosensorik und Nanofabrikation. Angew Chem Int Ed Engl 2010. [DOI: 10.1002/ange.200904930] [Citation(s) in RCA: 75] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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14
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Zhao Z, Yan H, Liu Y. A Route to Scale Up DNA Origami Using DNA Tiles as Folding Staples. Angew Chem Int Ed Engl 2010. [DOI: 10.1002/ange.200906225] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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15
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Hamada S, Murata S. Substrate-assisted assembly of interconnected single-duplex DNA nanostructures. Angew Chem Int Ed Engl 2009; 48:6820-3. [PMID: 19688799 DOI: 10.1002/anie.200902662] [Citation(s) in RCA: 136] [Impact Index Per Article: 9.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Shogo Hamada
- Department of Computational Intelligence and Systems Science, Interdisciplinary Graduate School of Science and Engineering, Tokyo Institute of Technology, 4259 Nagatsuda, Midori, Yokohama 226-8502, Japan
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16
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Goodman RP, Erben CM, Malo J, Ho WM, McKee ML, Kapanidis AN, Turberfield AJ. A facile method for reversibly linking a recombinant protein to DNA. Chembiochem 2009; 10:1551-7. [PMID: 19449345 DOI: 10.1002/cbic.200900165] [Citation(s) in RCA: 63] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Abstract
We present a facile method for linking recombinant proteins to DNA. It is based on the nickel-mediated interaction between a hexahistidine tag (His(6)-tag) and DNA functionalized with three nitrilotriacetic acid (NTA) groups. The resulting DNA-protein linkage is site-specific. It can be broken quickly and controllably by the addition of a chelating agent that binds nickel. We have used this new linker to bind proteins to a variety of DNA motifs commonly used in the fabrication of nanostructures by DNA self-assembly.
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Affiliation(s)
- Russell P Goodman
- Department of Physics, Clarendon Laboratory, University of Oxford, Parks Road, Oxford OX13PU, UK
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17
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Hamada S, Murata S. Substrate-Assisted Assembly of Interconnected Single-Duplex DNA Nanostructures. Angew Chem Int Ed Engl 2009. [DOI: 10.1002/ange.200902662] [Citation(s) in RCA: 48] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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18
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Meng M, Ahlborn C, Bauer M, Plietzsch O, Soomro SA, Singh A, Muller T, Wenzel W, Bräse S, Richert C. Two base pair duplexes suffice to build a novel material. Chembiochem 2009; 10:1335-9. [PMID: 19422011 DOI: 10.1002/cbic.200900162] [Citation(s) in RCA: 54] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Abstract
Tetrahedral DNA hybrids with tetrakis(p-hydroxyphenyl)methane cores hybridize in a sequence-specific fashion at much higher temperatures than isolated linear duplexes. Dinucleotide DNA arms suffice to induce the formation of a solid at room temperature; this demonstrates the strength of multivalent binding. The graphic shows a view of a modeled assembly.
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Affiliation(s)
- Martin Meng
- Institut für Organische Chemie and Center for functional Nanostructures, Universität Karlsruhe (TH), 76131 Karlsruhe, Germany
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Kuzuya A, Kimura M, Numajiri K, Koshi N, Ohnishi T, Okada F, Komiyama M. Precisely Programmed and Robust 2D Streptavidin Nanoarrays by Using Periodical Nanometer-Scale Wells Embedded in DNA Origami Assembly. Chembiochem 2009; 10:1811-5. [DOI: 10.1002/cbic.200900229] [Citation(s) in RCA: 113] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
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20
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Münzenberg C, Rossi A, Feldman K, Fiolka R, Stemmer A, Kita-Tokarczyk K, Meier W, Sakamoto J, Lukin O, Schlüter A. Synthesis of Compounds Presenting Three and Four Anthracene Units as Potential Connectors To Mediate Infinite Lateral Growth at the Air/Water Interface. Chemistry 2008; 14:10797-807. [DOI: 10.1002/chem.200800478] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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21
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Kuzuya A, Numajiri K, Komiyama M. Accommodation of a Single Protein Guest in Nanometer-Scale Wells Embedded in a “DNA Nanotape”. Angew Chem Int Ed Engl 2008. [DOI: 10.1002/ange.200800028] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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22
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Kuzuya A, Numajiri K, Komiyama M. Accommodation of a Single Protein Guest in Nanometer-Scale Wells Embedded in a “DNA Nanotape”. Angew Chem Int Ed Engl 2008; 47:3400-2. [DOI: 10.1002/anie.200800028] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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23
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Affiliation(s)
- Eike Friedrichs
- Department für Physik, Ludwig-Maximilians-Universität München, Geschwister-Scholl-Platz 1, 80539 München, Germany
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24
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Lee J, Wernette D, Yigit M, Liu J, Wang Z, Lu Y. Site-Specific Control of Distances between Gold Nanoparticles Using Phosphorothioate Anchors on DNA and a Short Bifunctional Molecular Fastener. Angew Chem Int Ed Engl 2007; 46:9006-10. [DOI: 10.1002/anie.200702569] [Citation(s) in RCA: 92] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
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25
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Lee J, Wernette D, Yigit M, Liu J, Wang Z, Lu Y. Site-Specific Control of Distances between Gold Nanoparticles Using Phosphorothioate Anchors on DNA and a Short Bifunctional Molecular Fastener. Angew Chem Int Ed Engl 2007. [DOI: 10.1002/ange.200702569] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
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26
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Lin C, Ke Y, Liu Y, Mertig M, Gu J, Yan H. Functional DNA Nanotube Arrays: Bottom-Up Meets Top-Down. Angew Chem Int Ed Engl 2007. [DOI: 10.1002/ange.200701767] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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27
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Lin C, Ke Y, Liu Y, Mertig M, Gu J, Yan H. Functional DNA nanotube arrays: bottom-up meets top-down. Angew Chem Int Ed Engl 2007; 46:6089-92. [PMID: 17628475 PMCID: PMC2094123 DOI: 10.1002/anie.200701767] [Citation(s) in RCA: 54] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Chenxiang Lin
- Department of Chemistry and Biodesign Institute, Arizona State University, Tempe, AZ 85287, USA
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Abstract
DNA tile based self-assembly provides an attractive route to create nanoarchitectures of programmable patterns. It also offers excellent scaffolds for directed self-assembly of nanometer-scale materials, ranging from nanoparticles to proteins, with potential applications in constructing nanoelectronic/nanophotonic devices and protein/ligand nanoarrays. This Review first summarizes the currently available DNA tile toolboxes and further emphasizes recent developments toward self-assembling DNA nanostructures with increasing complexity. Exciting progress using DNA tiles for directed self-assembly of other nanometer scale components is also discussed.
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Affiliation(s)
- Chenxiang Lin
- Department of Chemistry and Biochemistry and The Biodesign Institute, Arizona State University, Tempe, AZ 85287, USA
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29
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Abstract
DNA has many physical and chemical properties that make it a powerful material for molecular constructions at the nanometer length scale. In particular, its ability to form duplexes and other secondary structures through predictable nucleotide-sequence-directed hybridization allows for the design of programmable structural motifs which can self-assemble to form large supramolecular arrays, scaffolds, and even mechanical and logical nanodevices. Despite the large variety of structural motifs used as building blocks in the programmed assembly of supramolecular DNA nanoarchitectures, the various modules share underlying principles in terms of the design of their hierarchical configuration and the implemented nucleotide sequences. This Review is intended to provide an overview of this fascinating and rapidly growing field of research from the structural design point of view.
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Affiliation(s)
- Udo Feldkamp
- Fachbereich Chemie, Biologisch-Chemische Mikrostrukturtechnik, Universität Dortmund, Germany.
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31
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He Y, Tian Y, Chen Y, Deng Z, Ribbe AE, Mao C. Sequence Symmetry as a Tool for Designing DNA Nanostructures. Angew Chem Int Ed Engl 2005; 44:6694-6. [PMID: 16187389 DOI: 10.1002/anie.200502193] [Citation(s) in RCA: 120] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Yu He
- Purdue Laboratory for Chemical Nanotechnology, Purdue University, West Lafayette, IN, USA
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32
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He Y, Tian Y, Chen Y, Deng Z, Ribbe AE, Mao C. Sequence Symmetry as a Tool for Designing DNA Nanostructures. Angew Chem Int Ed Engl 2005. [DOI: 10.1002/ange.200502193] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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