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Hanna CC, Kriegesmann J, Dowman LJ, Becker CFW, Payne RJ. Chemische Synthese und Semisynthese von lipidierten Proteinen. ANGEWANDTE CHEMIE (WEINHEIM AN DER BERGSTRASSE, GERMANY) 2022; 134:e202111266. [PMID: 38504765 PMCID: PMC10947004 DOI: 10.1002/ange.202111266] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/20/2021] [Indexed: 11/11/2022]
Abstract
AbstractLipidierung ist eine ubiquitäre Modifikation von Peptiden und Proteinen, die entweder co‐ oder posttranslational auftreten kann. Für die Vielzahl von Lipidklassen wurde gezeigt, dass diese viele entscheidende biologische Aktivitäten, z. B. die Regulierung der Signalweiterleitung, Zell‐Zell‐Adhäsion sowie die Anlagerung von Proteinen an Lipid‐Rafts und Phospholipidmembranen, beeinflussen. Während die Natur Enzyme nutzt, um Lipidmodifikationen in Proteine einzubringen, ist ihre Nutzung für die chemoenzymatische Herstellung von lipidierten Proteinen häufig ineffizient. Eine Alternative ist die Kombination moderner synthetischer und semisynthetischer Techniken, um lipidierte Proteine in reiner und homogen modifizierter Form zu erhalten. Dieser Aufsatz erörtert Fortschritte in der Entwicklung der Lipidierungs‐ und Ligationschemie und deren Anwendung in der Synthese und Semisynthese homogen lipidierter Proteine, die es ermöglichen, den Einfluss dieser Modifikationen auf die Proteinstruktur und ‐funktion zu untersuchen.
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Affiliation(s)
- Cameron C. Hanna
- School of ChemistryThe University of SydneySydneyNSW2006Australien
| | - Julia Kriegesmann
- Institut für Biologische ChemieFakultät für ChemieUniversität WienWienÖsterreich
| | - Luke J. Dowman
- School of ChemistryThe University of SydneySydneyNSW2006Australien
- Australian Research Council Centre of Excellence for Innovations in Peptide and Protein ScienceThe University of SydneySydneyNSW2006Australien
| | | | - Richard J. Payne
- School of ChemistryThe University of SydneySydneyNSW2006Australien
- Australian Research Council Centre of Excellence for Innovations in Peptide and Protein ScienceThe University of SydneySydneyNSW2006Australien
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2
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Hanna C, Kriegesmann J, Dowman L, Becker C, Payne RJ. Chemical Synthesis and Semisynthesis of Lipidated Proteins. Angew Chem Int Ed Engl 2021; 61:e202111266. [PMID: 34611966 PMCID: PMC9303669 DOI: 10.1002/anie.202111266] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2021] [Indexed: 11/24/2022]
Abstract
Lipidation is a ubiquitous modification of peptides and proteins that can occur either co‐ or post‐translationally. An array of different lipid classes can adorn proteins and has been shown to influence a number of crucial biological activities, including the regulation of signaling, cell–cell adhesion events, and the anchoring of proteins to lipid rafts and phospholipid membranes. Whereas nature employs a range of enzymes to install lipid modifications onto proteins, the use of these for the chemoenzymatic generation of lipidated proteins is often inefficient or impractical. An alternative is to harness the power of modern synthetic and semisynthetic technologies to access lipid‐modified proteins in a pure and homogeneously modified form. This Review aims to highlight significant advances in the development of lipidation and ligation chemistry and their implementation in the synthesis and semisynthesis of homogeneous lipidated proteins that have enabled the influence of these modifications on protein structure and function to be uncovered.
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Affiliation(s)
- Cameron Hanna
- The University of Sydney, Chemistry, 2006, Sydney, AUSTRALIA
| | - Julia Kriegesmann
- University of Vienna: Universitat Wien, Institute of Biological Chemistry, Vienna, AUSTRIA
| | - Luke Dowman
- The University of Sydney, School of Chemistry, 2006, Sydney, AUSTRALIA
| | - Christian Becker
- University of Vienna Faculty of Chemistry: Universitat Wien Fakultat fur Chemie, Institute of Biological Chemistry, Vienna, AUSTRIA
| | - Richard James Payne
- The University of Sydney, School of Chemistry, Eastern Avenue, 2006, Sydney, AUSTRALIA
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3
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Takahara M, Kamiya N. Synthetic Strategies for Artificial Lipidation of Functional Proteins. Chemistry 2020; 26:4645-4655. [DOI: 10.1002/chem.201904568] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2019] [Revised: 11/29/2019] [Indexed: 11/08/2022]
Affiliation(s)
- Mari Takahara
- Department of Materials Science & Chemical EngineeringNational Institute of TechnologyKitakyushu College 5-20-1 Shii Kokuraminamiku Kitakyushu 802-0985 Japan
| | - Noriho Kamiya
- Department of Applied ChemistryGraduate School of Engineering 744 Motooka Nishiku Fukuoka 819-0395 Japan
- Division of Biotechnology, Center for Future ChemistryKyushu University 744 Motooka Nishiku Fukuoka 819-0395 Japan
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4
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Schlatzer T, Schröder H, Trobe M, Lembacher‐Fadum C, Stangl S, Schlögl C, Weber H, Breinbauer R. Pd/BIPHEPHOS is an Efficient Catalyst for the Pd-Catalyzed S-Allylation of Thiols with High n-Selectivity. Adv Synth Catal 2020; 362:331-336. [PMID: 32063821 PMCID: PMC7004212 DOI: 10.1002/adsc.201901250] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2019] [Revised: 10/22/2019] [Indexed: 11/06/2022]
Abstract
The Pd-catalyzed S-allylation of thiols with stable allylcarbonate and allylacetate reagents offers several advantages over established reactions for the formation of thioethers. We could demonstrate that Pd/BIPHEPHOS is a catalyst system which allows the transition metal-catalyzed S-allylation of thiols with excellent n-regioselectivity. Mechanistic studies showed that this reaction is reversible under the applied reaction conditions. The excellent functional group tolerance of this transformation was demonstrated with a broad variety of thiol nucleophiles (18 examples) and allyl substrates (9 examples), and could even be applied for the late-stage diversification of cephalosporins, which might find application in the synthesis of new antibiotics.
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Affiliation(s)
- Thomas Schlatzer
- Institute of Organic ChemistryGraz University of TechnologyStremayrgasse 9A-8010GrazAustria
| | - Hilmar Schröder
- Institute of Organic ChemistryGraz University of TechnologyStremayrgasse 9A-8010GrazAustria
| | - Melanie Trobe
- Institute of Organic ChemistryGraz University of TechnologyStremayrgasse 9A-8010GrazAustria
| | | | - Simon Stangl
- Institute of Organic ChemistryGraz University of TechnologyStremayrgasse 9A-8010GrazAustria
| | - Christoph Schlögl
- Institute of Organic ChemistryGraz University of TechnologyStremayrgasse 9A-8010GrazAustria
| | - Hansjörg Weber
- Institute of Organic ChemistryGraz University of TechnologyStremayrgasse 9A-8010GrazAustria
| | - Rolf Breinbauer
- Institute of Organic ChemistryGraz University of TechnologyStremayrgasse 9A-8010GrazAustria
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5
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Kaiser N, Mejuch T, Fedoryshchak R, Janning P, Tate EW, Waldmann H. Photoactivatable Myristic Acid Probes for UNC119-Cargo Interactions. Chembiochem 2018; 20:134-139. [DOI: 10.1002/cbic.201800406] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2018] [Indexed: 01/01/2023]
Affiliation(s)
- Nadine Kaiser
- Department of Chemical Biology; Max-Planck-Institute of, Molecular Physiology; Otto-Hahn-Strasse 11 44227 Dortmund Germany
- Faculty of Chemistry and Chemical Biology; TU Dortmund University; Otto-Hahn-Strasse 6 44227 Dortmund Germany
| | - Tom Mejuch
- Department of Chemical Biology; Max-Planck-Institute of, Molecular Physiology; Otto-Hahn-Strasse 11 44227 Dortmund Germany
- Faculty of Chemistry and Chemical Biology; TU Dortmund University; Otto-Hahn-Strasse 6 44227 Dortmund Germany
| | - Roman Fedoryshchak
- Department of Chemistry; Imperial College London; Exhibition Road London SW7 2AZ UK
| | - Petra Janning
- Department of Chemical Biology; Max-Planck-Institute of, Molecular Physiology; Otto-Hahn-Strasse 11 44227 Dortmund Germany
| | - Edward W. Tate
- Department of Chemistry; Imperial College London; Exhibition Road London SW7 2AZ UK
| | - Herbert Waldmann
- Department of Chemical Biology; Max-Planck-Institute of, Molecular Physiology; Otto-Hahn-Strasse 11 44227 Dortmund Germany
- Faculty of Chemistry and Chemical Biology; TU Dortmund University; Otto-Hahn-Strasse 6 44227 Dortmund Germany
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6
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Murarka S, Martín-Gago P, Schultz-Fademrecht C, Al Saabi A, Baumann M, Fansa EK, Ismail S, Nussbaumer P, Wittinghofer A, Waldmann H. Development of Pyridazinone Chemotypes Targeting the PDEδ Prenyl Binding Site. Chemistry 2017; 23:6083-6093. [PMID: 27809361 DOI: 10.1002/chem.201603222] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2016] [Indexed: 12/18/2022]
Abstract
The K-Ras GTPase is a major target in anticancer drug discovery. However, direct interference with signaling by K-Ras has not led to clinically useful drugs yet. Correct localization and signaling by farnesylated K-Ras is regulated by the prenyl binding protein PDEδ. Interfering with binding of PDEδ to K-Ras by means of small molecules provides a novel opportunity to suppress oncogenic signaling. Here we describe the identification and structure-guided development of novel K-Ras-PDEδ inhibitor chemotypes based on pyrrolopyridazinones and pyrazolopyridazinones that bind to the farnesyl binding pocket of PDEδ with low nanomolar affinity. We delineate the structure-property relationship and in vivo pharmacokinetic (PK) and toxicokinetic (Tox) studies for pyrazolopyridazinone-based K-Ras-PDEδ inhibitors. These findings may inspire novel drug discovery efforts aimed at the development of drugs targeting oncogenic Ras.
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Affiliation(s)
- Sandip Murarka
- Max-Planck-Institut für Molekulare Physiologie, Abteilung Chemische Biologie, Otto-Hahn-Straße 11, 44227, Dortmund, Germany
| | - Pablo Martín-Gago
- Max-Planck-Institut für Molekulare Physiologie, Abteilung Chemische Biologie, Otto-Hahn-Straße 11, 44227, Dortmund, Germany
| | | | - Alaa Al Saabi
- Lead Discovery Center GmbH, 44227, Dortmund, Germany
| | | | - Eyad K Fansa
- Max-Planck-Institut für Molekulare Physiologie, Structural Biology Group, 44227, Dortmund, Germany
| | - Shehab Ismail
- Beatson Institute for Cancer Research, Bearsden, Glasgow, G61 1BD, UK
| | | | - Alfred Wittinghofer
- Max-Planck-Institut für Molekulare Physiologie, Structural Biology Group, 44227, Dortmund, Germany
| | - Herbert Waldmann
- Max-Planck-Institut für Molekulare Physiologie, Abteilung Chemische Biologie, Otto-Hahn-Straße 11, 44227, Dortmund, Germany
- Technische Universität Dortmund, Fakultät Chemie, Chemische Biologie, Otto-Hahn-Straße 6, 44221, Dortmund, Germany
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7
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Calce E, De Luca S. The Cysteine S-Alkylation Reaction as a Synthetic Method to Covalently Modify Peptide Sequences. Chemistry 2016; 23:224-233. [DOI: 10.1002/chem.201602694] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2016] [Revised: 07/13/2016] [Indexed: 11/11/2022]
Affiliation(s)
- Enrica Calce
- Institute of Biostructures and Bioimaging; National Research Council; Via Mezzocannone, 16 80134 Naples Italy
| | - Stefania De Luca
- Institute of Biostructures and Bioimaging; National Research Council; Via Mezzocannone, 16 80134 Naples Italy
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8
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Mejuch T, van Hattum H, Triola G, Jaiswal M, Waldmann H. Specificity of Lipoprotein Chaperones for the Characteristic Lipidated Structural Motifs of their Cognate Lipoproteins. Chembiochem 2015; 16:2460-5. [PMID: 26503308 DOI: 10.1002/cbic.201500355] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2015] [Indexed: 11/08/2022]
Abstract
Lipoprotein-binding chaperones mediate intracellular transport of lipidated proteins and determine their proper localisation and functioning. Understanding of the exact structural parameters that determine recognition and transport by different chaperones is of major interest. We have synthesised several lipid-modified peptides, representative of different lipoprotein classes, and have investigated their binding to the relevant chaperones PDEδ, UNC119a, UNC119b, and galectins-1 and -3. Our results demonstrate that PDEδ recognises S-isoprenylated C-terminal peptidic structures but not N-myristoylated peptides. In contrast, UNC119 proteins bind only mono-N-myristoylated, but do not recognise doubly lipidated and S-isoprenylated peptides at the C terminus. For galectins-1 and -3, neither binding to N-acylated, nor to C-terminally prenylated peptides could be determined. These results shed light on the specificity of the chaperone-mediated cellular lipoprotein transport systems.
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Affiliation(s)
- Tom Mejuch
- Department of Chemical Biology, Max Planck Institute of Molecular Physiology, Otto-Hahn-Strasse 11, 44227, Dortmund, Germany
| | - Hilde van Hattum
- Department of Chemical Biology, Max Planck Institute of Molecular Physiology, Otto-Hahn-Strasse 11, 44227, Dortmund, Germany
| | - Gemma Triola
- Department of Chemical Biology, Max Planck Institute of Molecular Physiology, Otto-Hahn-Strasse 11, 44227, Dortmund, Germany
| | - Mamta Jaiswal
- Department of Structural Biology, Max Planck Institute of Molecular Physiology, Otto-Hahn-Strasse 11, 44227, Dortmund, Germany
| | - Herbert Waldmann
- Department of Chemical Biology, Max Planck Institute of Molecular Physiology, Otto-Hahn-Strasse 11, 44227, Dortmund, Germany. .,Department of Chemistry and Chemical Biology, Technical University of Dortmund, Otto-Hahn-Strasse 6, 44227, Dortmund, Germany.
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9
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Chen YX, Koch S, Uhlenbrock K, Weise K, Das D, Gremer L, Brunsveld L, Wittinghofer A, Winter R, Triola G, Waldmann H. Synthesis of the Rheb and K-Ras4B GTPases. Angew Chem Int Ed Engl 2015; 49:6090-5. [PMID: 20652921 DOI: 10.1002/anie.201001884] [Citation(s) in RCA: 68] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Yong-Xiang Chen
- Abteilung Chemische Biologie, Max-Planck-Institut für molekulare Physiologie, Otto-Hahn-Strasse 11, 44227 Dortmund, Germany
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10
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Herkert L, Green SLJ, Barker G, Johnson DG, Young PC, Macgregor SA, Lee AL. Gold(I)-catalysed direct thioetherifications using allylic alcohols: an experimental and computational study. Chemistry 2014; 20:11540-8. [PMID: 25080400 PMCID: PMC4517163 DOI: 10.1002/chem.201403293] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2014] [Indexed: 01/11/2023]
Abstract
A gold(I)-catalysed direct thioetherification reaction between allylic alcohols and thiols is presented. The reaction is generally highly regioselective (S(N)2'). This dehydrative allylation procedure is very mild and atom economical, producing only water as the by-product and avoiding any unnecessary waste/steps associated with installing a leaving or activating group on the substrate. Computational studies are presented to gain insight into the mechanism of the reaction. Calculations indicate that the regioselectivity is under equilibrium control and is ultimately dictated by the thermodynamic stability of the products.
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Affiliation(s)
- Lorena Herkert
- Institute of Chemical Sciences, Heriot-Watt UniversityEdinburgh, EH14 4AS (UK) E-mail:
| | - Samantha L J Green
- Institute of Chemical Sciences, Heriot-Watt UniversityEdinburgh, EH14 4AS (UK) E-mail:
| | - Graeme Barker
- Institute of Chemical Sciences, Heriot-Watt UniversityEdinburgh, EH14 4AS (UK) E-mail:
| | - David G Johnson
- Institute of Chemical Sciences, Heriot-Watt UniversityEdinburgh, EH14 4AS (UK) E-mail:
| | - Paul C Young
- Institute of Chemical Sciences, Heriot-Watt UniversityEdinburgh, EH14 4AS (UK) E-mail:
| | - Stuart A Macgregor
- Institute of Chemical Sciences, Heriot-Watt UniversityEdinburgh, EH14 4AS (UK) E-mail:
| | - Ai-Lan Lee
- Institute of Chemical Sciences, Heriot-Watt UniversityEdinburgh, EH14 4AS (UK) E-mail:
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11
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Huang YC, Li YM, Chen Y, Pan M, Li YT, Yu L, Guo QX, Liu L. Synthesis of Autophagosomal Marker Protein LC3-II under Detergent-Free Conditions. Angew Chem Int Ed Engl 2013. [DOI: 10.1002/ange.201209523] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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12
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Huang YC, Li YM, Chen Y, Pan M, Li YT, Yu L, Guo QX, Liu L. Synthesis of Autophagosomal Marker Protein LC3-II under Detergent-Free Conditions. Angew Chem Int Ed Engl 2013; 52:4858-62. [DOI: 10.1002/anie.201209523] [Citation(s) in RCA: 80] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2012] [Revised: 02/06/2013] [Indexed: 11/10/2022]
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13
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Zimmermann TJ, Bürger M, Tashiro E, Kondoh Y, Martinez NE, Görmer K, Rosin-Steiner S, Shimizu T, Ozaki S, Mikoshiba K, Watanabe N, Hall D, Vetter IR, Osada H, Hedberg C, Waldmann H. Boron-Based Inhibitors of Acyl Protein Thioesterases 1 and 2. Chembiochem 2012; 14:115-22. [DOI: 10.1002/cbic.201200571] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2012] [Indexed: 11/08/2022]
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14
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Görmer K, Bürger M, Kruijtzer JAW, Vetter I, Vartak N, Brunsveld L, Bastiaens PIH, Liskamp RMJ, Triola G, Waldmann H. Chemical-biological exploration of the limits of the Ras de- and repalmitoylating machinery. Chembiochem 2012; 13:1017-23. [PMID: 22488913 DOI: 10.1002/cbic.201200078] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2012] [Indexed: 11/12/2022]
Abstract
A dynamic de-/repalmitoylation cycle determines localization and activity of H- and N-Ras. This combined cellular de- and repalmitoylation machinery has been shown to be substrate tolerant--it accepts variation of amino acid sequence, structure and configuration. Here, semisynthetic Ras-proteins in which the C-terminal amino acids are replaced by peptoid residues are used to reveal the first limitations of substrate recognition by the de- and repalmitoylating machinery.
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Affiliation(s)
- Kristina Görmer
- Abteilung Chemische Biologie, Max-Planck-Institut für molekulare Physiologie, Otto-Hahn-Strasse 11, 44227 Dortmund, Germany
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15
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Yi L, Abootorabi M, Wu YW. Semisynthesis of Prenylated Rab GTPases by Click Ligation. Chembiochem 2011; 12:2413-7. [DOI: 10.1002/cbic.201100466] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2011] [Indexed: 11/11/2022]
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16
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Hedberg C, Dekker FJ, Rusch M, Renner S, Wetzel S, Vartak N, Gerding-Reimers C, Bon RS, Bastiaens PIH, Waldmann H. Development of Highly Potent Inhibitors of the Ras-Targeting Human Acyl Protein Thioesterases Based on Substrate Similarity Design. Angew Chem Int Ed Engl 2011; 50:9832-7. [DOI: 10.1002/anie.201102965] [Citation(s) in RCA: 63] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2011] [Revised: 08/08/2011] [Indexed: 01/22/2023]
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17
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Hedberg C, Dekker FJ, Rusch M, Renner S, Wetzel S, Vartak N, Gerding-Reimers C, Bon RS, Bastiaens PIH, Waldmann H. Development of Highly Potent Inhibitors of the Ras-Targeting Human Acyl Protein Thioesterases Based on Substrate Similarity Design. Angew Chem Int Ed Engl 2011. [DOI: 10.1002/ange.201102965] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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18
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Chen YX, Koch S, Uhlenbrock K, Weise K, Das D, Gremer L, Brunsveld L, Wittinghofer A, Winter R, Triola G, Waldmann H. Synthesis of the Rheb and K-Ras4B GTPases. Angew Chem Int Ed Engl 2010. [DOI: 10.1002/ange.201001884] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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19
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Triola G, Gerauer M, Görmer K, Brunsveld L, Waldmann H. Solid-Phase Synthesis of Lipidated Ras Peptides Employing the Ellman Sulfonamide Linker. Chemistry 2010; 16:9585-91. [DOI: 10.1002/chem.201001642] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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20
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Weinrich D, Köhn M, Jonkheijm P, Westerlind U, Dehmelt L, Engelkamp H, Christianen PCM, Kuhlmann J, Maan JC, Nüsse D, Schröder H, Wacker R, Voges E, Breinbauer R, Kunz H, Niemeyer CM, Waldmann H. Preparation of biomolecule microstructures and microarrays by thiol-ene photoimmobilization. Chembiochem 2010; 11:235-47. [PMID: 20043307 DOI: 10.1002/cbic.200900559] [Citation(s) in RCA: 46] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
A mild, fast and flexible method for photoimmobilization of biomolecules based on the light-initiated thiol-ene reaction has been developed. After investigation and optimization of various surface materials, surface chemistries and reaction parameters, microstructures and microarrays of biotin, oligonucleotides, peptides, and MUC1 tandem repeat glycopeptides were prepared with this photoimmobilization method. Furthermore, MUC1 tandem repeat glycopeptide microarrays were successfully used to probe antibodies in mouse serum obtained from vaccinated mice. Dimensions of biomolecule microstructures were shown to be freely controllable through photolithographic techniques, and features down to 5 microm in size covering an area of up to 75x25 mm were created. Use of a confocal laser microscope with a UV laser as UV-light source enabled further reduction of biotin feature size opening access to nanostructured biochips.
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Affiliation(s)
- Dirk Weinrich
- Department of Chemical Biology, Max Planck Institute of Molecular Physiology, Otto-Hahn-Strasse 11, 44227 Dortmund, Germany
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Weinrich D, Lin PC, Jonkheijm P, Nguyen U, Schröder H, Niemeyer C, Alexandrov K, Goody R, Waldmann H. Oriented Immobilization of Farnesylated Proteins by the Thiol-Ene Reaction. Angew Chem Int Ed Engl 2010. [DOI: 10.1002/ange.200906190] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
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22
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Vogel A, Reuther G, Weise K, Triola G, Nikolaus J, Tan KT, Nowak C, Herrmann A, Waldmann H, Winter R, Huster D. The lipid modifications of Ras that sense membrane environments and induce local enrichment. Angew Chem Int Ed Engl 2010; 48:8784-7. [PMID: 19830755 DOI: 10.1002/anie.200903396] [Citation(s) in RCA: 60] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Affiliation(s)
- Alexander Vogel
- Institute of Biochemistry/Biotechnology, Martin Luther University Halle-Wittenburg, Kurt-Mothes-Strasse 3, 06120 Halle, Germany
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Weinrich D, Lin PC, Jonkheijm P, Nguyen U, Schröder H, Niemeyer C, Alexandrov K, Goody R, Waldmann H. Oriented Immobilization of Farnesylated Proteins by the Thiol-Ene Reaction. Angew Chem Int Ed Engl 2010; 49:1252-7. [DOI: 10.1002/anie.200906190] [Citation(s) in RCA: 88] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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Die Lipidmodifikationen von Ras passen sich an die Membranumgebung an und beeinflussen die lokale Konzentration. Angew Chem Int Ed Engl 2009. [DOI: 10.1002/ange.200903396] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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Piontek C, Ring P, Harjes O, Heinlein C, Mezzato S, Lombana N, Pöhner C, Püttner M, Varón Silva D, Martin A, Schmid F, Unverzagt C. Semisynthesis of a Homogeneous Glycoprotein Enzyme: Ribonuclease C: Part 1. Angew Chem Int Ed Engl 2009; 48:1936-40. [DOI: 10.1002/anie.200804734] [Citation(s) in RCA: 75] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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Piontek C, Ring P, Harjes O, Heinlein C, Mezzato S, Lombana N, Pöhner C, Püttner M, Varón Silva D, Martin A, Schmid F, Unverzagt C. Semisynthese eines homogenen Glycoprotein-Enzyms: Ribonuclease C (Teil 1). Angew Chem Int Ed Engl 2009. [DOI: 10.1002/ange.200804734] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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Alexander M, Gerauer M, Pechlivanis M, Popkirova B, Dvorsky R, Brunsveld L, Waldmann H, Kuhlmann J. Mapping the isoprenoid binding pocket of PDEdelta by a semisynthetic, photoactivatable N-Ras lipoprotein. Chembiochem 2009; 10:98-108. [PMID: 18846587 DOI: 10.1002/cbic.200800275] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Abstract
Biologically functional Ras isoforms undergo post-translational modifications starting with farnesylation of the most C-terminal cysteine. Combined with further processing steps, this isoprenylation allows for the anchoring of these proteins in endomembranes, where signal transduction events take place. The specific localization is subject to dynamic regulation and assumed to modulate the activity of Ras proteins by governing their spatiotemporal distribution. The delta subunit of phosphodiesterase (PDEdelta) has attracted attention as a solubilization factor of isoprenylated Ras. In this study, we demonstrate that critical residues in the putative isoprenoid pocket of PDEdelta can be mapped by coupling with a semisynthetic N-Ras lipoprotein in which the native farnesyl group of the processed protein was replaced by a photoactivatable geranyl benzophenone moiety. The crosslinked product included parts of beta-sheet 9 of PDEdelta, which contains the highly conserved amino acids V145 and L147. Modeling of the PDEdelta-geranyl benzophenone (GerBP) complex supports the conclusion that the photolabeled sequence is embedded in the putative isoprenoid pocket of PDEdelta.
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Affiliation(s)
- Michael Alexander
- Department of Structural Biology, Max Planck Institute of Molecular Physiology, Otto-Hahn Strasse 11, Dortmund, Germany
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Hackenberger C, Schwarzer D. Chemoselektive Ligations- und Modifikationsstrategien für Peptide und Proteine. Angew Chem Int Ed Engl 2008. [DOI: 10.1002/ange.200801313] [Citation(s) in RCA: 204] [Impact Index Per Article: 12.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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Hackenberger C, Schwarzer D. Chemoselective Ligation and Modification Strategies for Peptides and Proteins. Angew Chem Int Ed Engl 2008; 47:10030-74. [DOI: 10.1002/anie.200801313] [Citation(s) in RCA: 651] [Impact Index Per Article: 40.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
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Becker C, Liu X, Olschewski D, Castelli R, Seidel R, Seeberger P. Semisynthesis of a Glycosylphosphatidylinositol-Anchored Prion Protein. Angew Chem Int Ed Engl 2008; 47:8215-9. [DOI: 10.1002/anie.200802161] [Citation(s) in RCA: 86] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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Becker C, Liu X, Olschewski D, Castelli R, Seidel R, Seeberger P. Semisynthese eines Glycosylphosphatidylinositol-verankerten Prionproteins. Angew Chem Int Ed Engl 2008. [DOI: 10.1002/ange.200802161] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
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Affiliation(s)
- Jennifer Wirtz
- LiMES-Life and Medical Sciences, Program Unit Membrane Biology and Lipid Biochemistry, Universität Bonn, Gerhard-Domagk-Strasse 1, 53121 Bonn, Germany
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Hwang Y, Thompson PR, Wang L, Jiang L, Kelleher NL, Cole PA. A selective chemical probe for coenzyme A-requiring enzymes. Angew Chem Int Ed Engl 2007; 46:7621-4. [PMID: 17768748 DOI: 10.1002/anie.200702485] [Citation(s) in RCA: 43] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Yousang Hwang
- Department of Pharmacology and Molecular Sciences, Johns Hopkins School of Medicine, Baltimore, MD 21205, USA
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Hwang Y, Thompson P, Wang L, Jiang L, Kelleher N, Cole P. A Selective Chemical Probe for Coenzyme A-Requiring Enzymes. Angew Chem Int Ed Engl 2007. [DOI: 10.1002/ange.200702485] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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Rauh D, Waldmann H. Symbiose aus Chemie und Biologie zum Studium von Proteinfunktionen. Angew Chem Int Ed Engl 2007. [DOI: 10.1002/ange.200602979] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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Rauh D, Waldmann H. Linking Chemistry and Biology for the Study of Protein Function. Angew Chem Int Ed Engl 2007; 46:826-9. [PMID: 17195266 DOI: 10.1002/anie.200602979] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
Affiliation(s)
- Daniel Rauh
- Chemical Genomics Centre of the Max-Planck-Society, Otto-Hahn-Strasse 15, 44227 Dortmund, Germany.
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